BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4524
         (929 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
           Angstroms Resolution: Structural Basis For Substrate
           Specificity
 pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
           Angstroms Resolution: Structural Basis For Substrate
           Specificity
 pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
           Angstroms Resolution: Structural Basis For Substrate
           Specificity
 pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
           Angstroms Resolution: Structural Basis For Substrate
           Specificity
          Length = 394

 Score = 31.2 bits (69), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 23/94 (24%)

Query: 602 YWDALSHMIKGALGTGILTMPHAFKDSGYLLGFL-------------GTVAI--GAFTTS 646
           +W  L ++  G LG   +T P  +  SG  LG+L             G V +  GA +  
Sbjct: 51  FWKQLGNL--GVLG---ITAPVQYGGSG--LGYLEHVLVMEEISRASGAVGLSYGAHSNL 103

Query: 647 CIQILVRAQYELCRRKRIPSLTYPEILGA-ALSE 679
           CI  LVR   E  + K +P L   E +GA A+SE
Sbjct: 104 CINQLVRNGNEAQKEKYLPKLISGEYIGALAMSE 137


>pdb|2CTZ|A Chain A, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase
           From Thermus Thermophilus Hb8
 pdb|2CTZ|B Chain B, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase
           From Thermus Thermophilus Hb8
          Length = 421

 Score = 30.8 bits (68), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 359 GSVTLNLPAGDLLAQSVKVM-LALAIFCTFALPQYIVYNIVWNCYLKTH 406
           G+  LN+P  + LAQ+ +   +AL +  TF +  Y++  + W   L TH
Sbjct: 154 GNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTH 202


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.143    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,461,774
Number of Sequences: 62578
Number of extensions: 910703
Number of successful extensions: 2421
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2420
Number of HSP's gapped (non-prelim): 3
length of query: 929
length of database: 14,973,337
effective HSP length: 108
effective length of query: 821
effective length of database: 8,214,913
effective search space: 6744443573
effective search space used: 6744443573
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.2 bits)