Query psy4524
Match_columns 929
No_of_seqs 512 out of 3155
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 19:23:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4524.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4524hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.1 8E-09 2.7E-13 118.8 23.1 243 595-857 5-253 (445)
2 3l1l_A Arginine/agmatine antip 98.7 4.3E-07 1.5E-11 104.3 21.0 63 291-356 190-253 (445)
3 3gia_A Uncharacterized protein 98.7 2.9E-07 9.9E-12 105.7 18.4 238 596-856 4-249 (444)
4 4djk_A Probable glutamate/gamm 98.4 3.3E-05 1.1E-09 90.2 26.6 245 592-857 5-263 (511)
5 3gia_A Uncharacterized protein 98.3 5.1E-06 1.8E-10 95.1 16.6 60 292-354 188-248 (444)
6 4djk_A Probable glutamate/gamm 98.2 0.00038 1.3E-08 81.0 27.5 61 293-356 202-263 (511)
7 2jln_A MHP1; hydantoin, transp 97.4 0.012 4E-07 68.1 23.5 126 197-323 109-239 (501)
8 2jln_A MHP1; hydantoin, transp 97.4 0.008 2.7E-07 69.4 21.7 288 597-902 24-329 (501)
9 3dh4_A Sodium/glucose cotransp 95.3 0.73 2.5E-05 53.3 20.2 154 596-771 18-173 (530)
10 3dh4_A Sodium/glucose cotransp 93.3 1.6 5.6E-05 50.3 17.2 41 228-268 131-171 (530)
11 2xq2_A Sodium/glucose cotransp 93.0 4.9 0.00017 47.0 21.0 149 598-768 49-199 (593)
12 2xq2_A Sodium/glucose cotransp 92.0 23 0.00077 41.3 32.1 49 213-266 150-198 (593)
13 4ain_A Glycine betaine transpo 24.7 1.5E+02 0.0052 33.6 8.0 155 599-759 95-270 (539)
14 2wsw_A BCCT family betaine/car 22.0 7.1E+02 0.024 27.9 12.8 77 687-764 190-270 (509)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.06 E-value=8e-09 Score=118.76 Aligned_cols=243 Identities=8% Similarity=-0.000 Sum_probs=158.4
Q ss_pred ccCCCcchHHHHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q psy4524 595 VSKKPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILG 674 (929)
Q Consensus 595 ~~~~~~s~~~a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 674 (929)
+++++.|.++..+..+++++|+|++.+|....+.|-. +++..++.++........+.|...+. ++.-...+..+
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~-----p~~Gg~y~~~~ 78 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLD-----PSPGGSYAYAR 78 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHC-----CCTTTHHHHHH
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccC-----CCCCCchhhHH
Confidence 3457899999999999999999999999998888864 77788888888888777777776432 23335666666
Q ss_pred HHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchhh
Q psy4524 675 AALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYI 754 (929)
Q Consensus 675 ~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 754 (929)
+.+ ||+..++......+.......++....++.+...++...+.+. .....+..+.+.-....+..|..
T Consensus 79 ~~~----------G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~in~~g~~~~ 147 (445)
T 3l1l_A 79 RCF----------GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWV-LTITCVVVLWIFVLLNIVGPKMI 147 (445)
T ss_dssp HHS----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHH-HHHHHHHHHHHHHHHHHHCHHHH
T ss_pred hHc----------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHH-HHHHHHHHHHHHHHHHHhchHHH
Confidence 655 7888888888888777766677777777766544433211111 11122222222333345677777
Q ss_pred hhHHHHHHHHHHHHHhhhhheeccC-CC-CCCCCC---CccCCCchhHHHHHHHHhhcccccccccccccCCCc-ccccc
Q psy4524 755 VPFSSSATGVMFVSLAITMYYILGD-FP-SFSDRT---PVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPR-QFTAR 828 (929)
Q Consensus 755 ~~~S~~~~~~~~~~~iii~~~~~~~-~~-~~~~~~---~~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~p~-~~~~~ 828 (929)
++++.+.....+..++.+....... .+ +..+.. ...++.++...+....|+|.|........+|+|||+ +.+|
T Consensus 148 ~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~- 226 (445)
T 3l1l_A 148 TRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPI- 226 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccH-
Confidence 7776655554433333222222211 11 111100 011245677788889999999999999999999995 3444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy4524 829 LGVLNVSSAINTTIFAAFGLLAYLKYGDE 857 (929)
Q Consensus 829 ~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~ 857 (929)
.+..+...+.++|....+......+.+
T Consensus 227 --a~~~~~~~~~~~y~~~~~~~~~~~~~~ 253 (445)
T 3l1l_A 227 --ATIGGVLIAAVCYVLSTTAIMGMIPNA 253 (445)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 999999999999999998877776643
No 2
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.72 E-value=4.3e-07 Score=104.25 Aligned_cols=63 Identities=8% Similarity=-0.009 Sum_probs=52.1
Q ss_pred CCcchhhhhHHHhhhccccchhhhhhhccCC-CCCCcccchhhhHHHHHHHHHHHHHhHHHHhcCCC
Q psy4524 291 LKELPLFFGTVMFSMSAIGIIMPLENEMRSP-SKFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPS 356 (929)
Q Consensus 291 ~~~~~~~~~~~~faf~~~~~~~~i~~eMk~p-~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~ 356 (929)
+.++..++....|+|.+........+|+||| |+.+| .+..+..+++++|.+..+......+.+
T Consensus 190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~---a~~~~~~~~~~~y~~~~~~~~~~~~~~ 253 (445)
T 3l1l_A 190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPI---ATIGGVLIAAVCYVLSTTAIMGMIPNA 253 (445)
T ss_dssp ---HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccH---HHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 4567788899999999999999999999999 45677 668899999999999998877777644
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.69 E-value=2.9e-07 Score=105.65 Aligned_cols=238 Identities=11% Similarity=0.042 Sum_probs=148.5
Q ss_pred cCCCcchHHHHHHHHhhhhhhhhchhHH-HHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q psy4524 596 SKKPLVYWDALSHMIKGALGTGILTMPH-AFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILG 674 (929)
Q Consensus 596 ~~~~~s~~~a~~~l~~s~iG~GiLsLP~-af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 674 (929)
++|+.|.++..+..+++++|+|++.+|. +.+.+|- ..++..++.+++...+...+.|... ..++.-...+..+
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~-----~~P~~Gg~y~~~~ 77 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGA-----KIVSNAGPIAFIH 77 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHT-----TCCCTTTHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHh-----hCCCCCcHHHhHH
Confidence 4578999999999999999999998874 4556666 5777788888888888788877763 3333345666777
Q ss_pred HHhccCCcccccccch--hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHH--HHHHHHHHHHhhhcccC
Q psy4524 675 AALSEGPARFRWLAPY--GRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRL--YMLVLFPPLLLISWVPN 750 (929)
Q Consensus 675 ~~f~~~~~~~~~~G~~--~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~--~~~i~~~~~~pl~~~~~ 750 (929)
+.+ |++ +.. +.....+........+....++.+.+.++. ..+... ...+....+.-....+.
T Consensus 78 ~~~----------G~~~~~g~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~in~~g 143 (444)
T 3gia_A 78 KAI----------GDNIITGA-LSILLWMSYVISIALFAKGFAGYFLPLINA---PINTFNIAITEIGIVAFFTALNFFG 143 (444)
T ss_dssp HHH----------CSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHh----------CcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCchHHHHHHHHHHHHHHHHHHHHh
Confidence 666 442 222 234444444555566666777777665543 111111 11222222233344556
Q ss_pred chhhhhHHHHHHHHHHHHHhhhhheecc--CCCCCCCCCCccCCCchhHHHHHHHHhhcccccccccccccCCCcc-ccc
Q psy4524 751 LKYIVPFSSSATGVMFVSLAITMYYILG--DFPSFSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQ-FTA 827 (929)
Q Consensus 751 l~~l~~~S~~~~~~~~~~~iii~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~faf~~h~~i~~i~~~m~~p~~-~~~ 827 (929)
.|...+++.+.....+...+........ +..+..+..+..++.++...+....|+|.|...+....+|+|||+| .+|
T Consensus 144 ~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ 223 (444)
T 3gia_A 144 SKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPR 223 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhH
Confidence 6777766665554433332222211111 1111221111222345566677788999999999999999999974 455
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy4524 828 RLGVLNVSSAINTTIFAAFGLLAYLKYGD 856 (929)
Q Consensus 828 ~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~ 856 (929)
.+..+...+.++|....+......+.
T Consensus 224 ---ai~~~~~~~~~~y~~~~~~~~~~~~~ 249 (444)
T 3gia_A 224 ---AIFISILIVMFVYVGVAISAIGNLPI 249 (444)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHTTSCH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 99999999999999988877666543
No 4
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.43 E-value=3.3e-05 Score=90.16 Aligned_cols=245 Identities=11% Similarity=0.024 Sum_probs=131.2
Q ss_pred cccccCCCcchHHHHHHHHhhhhhhhhchhHHHHhhcChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCCCCCHH
Q psy4524 592 LKAVSKKPLVYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTT-SCIQILVRAQYELCRRKRIPSLTYP 670 (929)
Q Consensus 592 ~~~~~~~~~s~~~a~~~l~~s~iG~GiLsLP~af~~~G~~~gii~l~~~~~~s~-~t~~lL~~~~~~~~~~~~~~~~sy~ 670 (929)
++++.+|+.+.++.++..+++++| +.++|. ....|.. +++..++.+.+.. .+...+.|.... +..+ .-...
T Consensus 5 ~~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~---~~~P-~GG~y 76 (511)
T 4djk_A 5 VQTGKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATV---DGWE-EGGVF 76 (511)
T ss_dssp -------CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTT---SCC----CHH
T ss_pred ccCccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHccc---ccCC-CCChh
Confidence 344556789999999999999986 567775 4666653 3333333333322 245555555520 0223 34555
Q ss_pred HHHHHHhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--hhhcC-CCchHHHHHHHHHHHHhhhc
Q psy4524 671 EILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVC--VRFWG-VTDLRLYMLVLFPPLLLISW 747 (929)
Q Consensus 671 ~l~~~~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~--~~~~~-~~~~~~~~~i~~~~~~pl~~ 747 (929)
...++.+ |++..++......+.......++....++.+...+ +...+ .+.. ..+.+..+.+.-...
T Consensus 77 ~~~~~~~----------g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~in 145 (511)
T 4djk_A 77 AWVSNTL----------GPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITK-TIAALIILWALALTQ 145 (511)
T ss_dssp HHHHHHH----------CHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSHH-HHHHHHHHHHHHHHH
T ss_pred hhHHhhc----------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCcHHH-HHHHHHHHHHHHHHH
Confidence 6666655 77777888777777766666666666666664432 22111 1111 222222222222333
Q ss_pred ccCchhhhhHHHHHHHH-H---HHHHhhhhh-eeccCCCC---CCCCCCccCC--CchhHHHHHHHHhhccccccccccc
Q psy4524 748 VPNLKYIVPFSSSATGV-M---FVSLAITMY-YILGDFPS---FSDRTPVGHL--SDLPLFVGVTLFSLSSIGVTMPLEN 817 (929)
Q Consensus 748 ~~~l~~l~~~S~~~~~~-~---~~~~iii~~-~~~~~~~~---~~~~~~~~~~--~~~~~~~g~~~faf~~h~~i~~i~~ 817 (929)
.+..|...++..+.... . +..+++... ....+.+. .+......++ .+....+...+|+|.|........+
T Consensus 146 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~ 225 (511)
T 4djk_A 146 FGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVN 225 (511)
T ss_dssp HTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGS
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44555555555543322 1 111111111 11111110 1111111111 2334556778999999999999999
Q ss_pred ccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy4524 818 EMQHPRQFTARLGVLNVSSAINTTIFAAFGLLAYLKYGDE 857 (929)
Q Consensus 818 ~m~~p~~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~ 857 (929)
|+|||+| ..++++..+..++.++|....+......+++
T Consensus 226 E~k~P~k--~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 226 EMSNPGR--DYPLAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp SSSCCTT--THHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred hccCccc--chhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 9999974 3344999999999999999988877766654
No 5
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.35 E-value=5.1e-06 Score=95.15 Aligned_cols=60 Identities=12% Similarity=0.284 Sum_probs=50.0
Q ss_pred CcchhhhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhHHHHhcC
Q psy4524 292 KELPLFFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFFGYLKYG 354 (929)
Q Consensus 292 ~~~~~~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG 354 (929)
.++..++....|+|.|........+|+|||+ +.+| .+..+..+++++|.+..+......+
T Consensus 188 ~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~---ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 188 SGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPR---AIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp HHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhH---HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3466677888999999999999999999995 4777 6688999999999998877665554
No 6
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.17 E-value=0.00038 Score=81.00 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=51.2
Q ss_pred cchhhhhHHHhhhccccchhhhhhhccCCC-CCCcccchhhhHHHHHHHHHHHHHhHHHHhcCCC
Q psy4524 293 ELPLFFGTVMFSMSAIGIIMPLENEMRSPS-KFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPS 356 (929)
Q Consensus 293 ~~~~~~~~~~faf~~~~~~~~i~~eMk~p~-~~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~ 356 (929)
+...++...+|+|.|........+|+|||+ +.+| .+..++.+++++|++..+......+++
T Consensus 202 ~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~---ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 202 GTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPL---AMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp TTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHH---HHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHhccCcccchhH---HHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 345667889999999999999999999995 4677 678899999999999988877776654
No 7
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=97.44 E-value=0.012 Score=68.06 Aligned_cols=126 Identities=8% Similarity=0.025 Sum_probs=59.8
Q ss_pred HHHHHhhhhHHHHHHHHHhhHHHHHHhhcCCCChhHHHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHHHHhheeEEEe
Q psy4524 197 FLVVCELGASCIYVIFVAGNLKAVADQYYGDHDIRFYMLLIFFPILLLCWIRNLKLLAPFSTLATAITIASFGITLYYVF 276 (929)
Q Consensus 197 ~i~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pL~~~r~l~~L~~~S~~~~~~i~~~v~~vi~~~~ 276 (929)
...+.++|-...-....++.++.+++...+..+..+..++..++.++..+ .-++.++++..+....++..++.+.+...
T Consensus 109 l~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~~-~G~~~i~~~~~~~~p~~~i~~i~~~~~~l 187 (501)
T 2jln_A 109 LKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTF-YGITFIRWMNVFASPVLLAMGVYMVYLML 187 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566665555666777777765433222223334445555555553 34666666666555444333333222221
Q ss_pred eccCC----CCCCCCCCCCCcchhhhhH-HHhhhccccchhhhhhhccCCCC
Q psy4524 277 TDVPS----ISERNPGGNLKELPLFFGT-VMFSMSAIGIIMPLENEMRSPSK 323 (929)
Q Consensus 277 ~~~~~----~~~~~~~~~~~~~~~~~~~-~~faf~~~~~~~~i~~eMk~p~~ 323 (929)
.+... ...........++..++.. +.+.-....+.+...+.+|+|++
T Consensus 188 ~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~ 239 (501)
T 2jln_A 188 DGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPN 239 (501)
T ss_dssp HHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTT
T ss_pred HhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCcc
Confidence 11110 0011111112233333332 22222334678888899998876
No 8
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=97.42 E-value=0.008 Score=69.42 Aligned_cols=288 Identities=8% Similarity=-0.013 Sum_probs=150.1
Q ss_pred CCCcchHHHHHHHHhhhhhhhhchhHHHHhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q psy4524 597 KKPLVYWDALSHMIKGALGTGILTMPHAFKD-SGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGA 675 (929)
Q Consensus 597 ~~~~s~~~a~~~l~~s~iG~GiLsLP~af~~-~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~ 675 (929)
+|+.++++-...-+...++.+...+...+.. .++.-+++.+++..++...-+.+......+.+ .+|.++.|.
T Consensus 24 ~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~G-------l~~~v~~R~ 96 (501)
T 2jln_A 24 ERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWG-------INFTVAARM 96 (501)
T ss_dssp GCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHC-------CCHHHHTTT
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcC-------CChhhhhHh
Confidence 3456777776666666666666666554443 33444555555555554444444444443322 368888887
Q ss_pred HhccCCcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchhhh
Q psy4524 676 ALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYIV 755 (929)
Q Consensus 676 ~f~~~~~~~~~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 755 (929)
.| |+++..+..+...+.++|-...-....++.+..+++...+..+.....+++.++.++.. ....+.+.
T Consensus 97 ~F----------G~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~-~~G~~~i~ 165 (501)
T 2jln_A 97 PF----------GIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTT-FYGITFIR 165 (501)
T ss_dssp TS----------CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-TTHHHHHH
T ss_pred hc----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH-HhCHHHHH
Confidence 66 89999999999999999998888888999998887654321123344445555555555 34566776
Q ss_pred hHHHHHHHHHHHHHhhhhheeccCCC----CCCCCCCccCCCchhHHHHH-HHHhhcccccccccccccCCCcc------
Q psy4524 756 PFSSSATGVMFVSLAITMYYILGDFP----SFSDRTPVGHLSDLPLFVGV-TLFSLSSIGVTMPLENEMQHPRQ------ 824 (929)
Q Consensus 756 ~~S~~~~~~~~~~~iii~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~-~~faf~~h~~i~~i~~~m~~p~~------ 824 (929)
++..++...+++..+...+....+.. +..+.+.......+...+.. ..+.-....+.+...+.+|+|++
T Consensus 166 ~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~ 245 (501)
T 2jln_A 166 WMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASREGQ 245 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCccccccch
Confidence 66666655554444333322221110 00011111112233333333 22222344667788888888775
Q ss_pred ---cccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc-cCCCChHHHHHH-HHHHHHHHHHhcc-chhHHHHH
Q psy4524 825 ---FTARLGVLNVSSAINTTIFAAFGLLAYLKYGDEVQGSITLN-LPQEDTLAVSVK-LLLSVSILFTFAL-PHFIVYDI 898 (929)
Q Consensus 825 ---~~~~~~v~~~s~~~~~~~Y~~~g~~gY~~fG~~~~~~il~n-~~~~~~~~~i~~-~~~~i~l~~syPL-~~~p~~~~ 898 (929)
.+|.......+..+...+...+|+..-...++.....++.. ++....+..++- +...++.+.+--. ++++....
T Consensus 246 ~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~ 325 (501)
T 2jln_A 246 TKADARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYT 325 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 11211122233334444444555443322222111122222 221112133444 4455555444443 67777777
Q ss_pred HHhh
Q psy4524 899 VWNR 902 (929)
Q Consensus 899 i~~~ 902 (929)
+.+.
T Consensus 326 l~~~ 329 (501)
T 2jln_A 326 LCST 329 (501)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7776
No 9
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=95.28 E-value=0.73 Score=53.31 Aligned_cols=154 Identities=13% Similarity=0.025 Sum_probs=83.8
Q ss_pred cCCCcchHHHHHHHHhhhhhhh-hchhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q psy4524 596 SKKPLVYWDALSHMIKGALGTG-ILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILG 674 (929)
Q Consensus 596 ~~~~~s~~~a~~~l~~s~iG~G-iLsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~ 674 (929)
..|+.+++...+.+..+.+++. .+++|-...+.|+........ .++........+..-.+ +.+..|..|.-+
T Consensus 18 aGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~-~~~~~~i~~~~~~p~~~------~~~~~T~~e~l~ 90 (530)
T 3dh4_A 18 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFI------EKGIYTIPEFVE 90 (530)
T ss_dssp CCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHH-HHHHHHHHHHHTHHHHH------HTTCCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHHHH------HcCCccHHHHHH
Confidence 3578889988888888877665 559998888888753221111 11111111222222221 234569999887
Q ss_pred HHhccCCcccccccchhHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchh
Q psy4524 675 AALSEGPARFRWLAPYGRGLSFTAMIVD-EIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKY 753 (929)
Q Consensus 675 ~~f~~~~~~~~~~G~~~~~~v~i~~~i~-~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 753 (929)
+- ||+..+.+..+...+. .+..+.+-+...+..++.++ .++...-+++..++.........++.
T Consensus 91 ~R----------fg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~-----Gi~~~~~i~i~~~i~~~Yt~~GGl~a 155 (530)
T 3dh4_A 91 KR----------FNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETIL-----GIPLMYSILGLALFALVYSIYGGLSA 155 (530)
T ss_dssp HH----------TCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHHHHHHHTTC------
T ss_pred HH----------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHHHHhcchHH
Confidence 53 4777777766654432 22222222223344444433 25566666677777788899999999
Q ss_pred hhhHHHHHHHHHHHHHhh
Q psy4524 754 IVPFSSSATGVMFVSLAI 771 (929)
Q Consensus 754 l~~~S~~~~~~~~~~~ii 771 (929)
..|...+=...++...++
T Consensus 156 V~~TD~iQ~~im~~g~~~ 173 (530)
T 3dh4_A 156 VVWTDVIQVFFLVLGGFM 173 (530)
T ss_dssp CCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 998887666665544333
No 10
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=93.26 E-value=1.6 Score=50.32 Aligned_cols=41 Identities=7% Similarity=-0.002 Sum_probs=19.9
Q ss_pred CChhHHHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHHHH
Q psy4524 228 HDIRFYMLLIFFPILLLCWIRNLKLLAPFSTLATAITIASF 268 (929)
Q Consensus 228 ~~~~~~~~i~~~~~~pL~~~r~l~~L~~~S~~~~~~i~~~v 268 (929)
.+...-+++..+++...+..--++...|...+=.+.++...
T Consensus 131 i~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~~im~~g~ 171 (530)
T 3dh4_A 131 IPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLVLGG 171 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTC------CCSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 34444445555555667777777887777766555544433
No 11
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=92.98 E-value=4.9 Score=47.03 Aligned_cols=149 Identities=13% Similarity=0.029 Sum_probs=79.8
Q ss_pred CCcchHHHHHHHHhhhhhhhh-chhHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q psy4524 598 KPLVYWDALSHMIKGALGTGI-LTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAA 676 (929)
Q Consensus 598 ~~~s~~~a~~~l~~s~iG~Gi-LsLP~af~~~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~ 676 (929)
|+.+++...+.+..+.+++.. ++.|-...+.|+........ .++........+..-.+ +.+..|..|.-++
T Consensus 49 R~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~------r~~~~T~~e~l~~- 120 (593)
T 2xq2_A 49 KSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFI------EKGIYTIPEFVEK- 120 (593)
T ss_dssp --CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHH------HTTCCSHHHHHHH-
T ss_pred CCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHH------hCCCCCcHHHHHH-
Confidence 566788888888777666554 59998888888753221111 11111111122222221 2345688898764
Q ss_pred hccCCcccccccchhHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhhhcccCchhhh
Q psy4524 677 LSEGPARFRWLAPYGRGLSFTAMIV-DEIGALCVYLLFIASNLSQVCVRFWGVTDLRLYMLVLFPPLLLISWVPNLKYIV 755 (929)
Q Consensus 677 f~~~~~~~~~~G~~~~~~v~i~~~i-~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 755 (929)
+||+..+.+..+...+ +.+.....-+...+..++.+++ ++....+++..++.........++...
T Consensus 121 ---------Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G-----i~~~~~i~i~~~i~~~Yt~~GGl~av~ 186 (593)
T 2xq2_A 121 ---------RFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG-----IPLMYSILGLALFALVYSIYGGLSAVV 186 (593)
T ss_dssp ---------HTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHTTC---CC
T ss_pred ---------HccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----ccHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 3477777766654433 2222223333334555555542 455555566666777888888898888
Q ss_pred hHHHHHHHHHHHH
Q psy4524 756 PFSSSATGVMFVS 768 (929)
Q Consensus 756 ~~S~~~~~~~~~~ 768 (929)
+.-.+=.+.++..
T Consensus 187 ~TD~iQ~iiml~~ 199 (593)
T 2xq2_A 187 WTDVIQVFFLVLG 199 (593)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8776655554433
No 12
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=91.97 E-value=23 Score=41.32 Aligned_cols=49 Identities=8% Similarity=0.033 Sum_probs=24.2
Q ss_pred HHhhHHHHHHhhcCCCChhHHHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHH
Q psy4524 213 VAGNLKAVADQYYGDHDIRFYMLLIFFPILLLCWIRNLKLLAPFSTLATAITIA 266 (929)
Q Consensus 213 ~~~~l~~l~~~~~~~~~~~~~~~i~~~~~~pL~~~r~l~~L~~~S~~~~~~i~~ 266 (929)
.+..++.+++ .+...-+++..+++...+..--++...|.-.+=.+.++.
T Consensus 150 ~~~~l~~~~G-----i~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~iiml~ 198 (593)
T 2xq2_A 150 GGLALETILG-----IPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLVL 198 (593)
T ss_dssp HHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHTTC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-----ccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4455555552 334333444555555566666777777766555544433
No 13
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=24.73 E-value=1.5e+02 Score=33.57 Aligned_cols=155 Identities=10% Similarity=0.003 Sum_probs=71.7
Q ss_pred CcchHHHHHHHHhhhhhhhhch----hHHHHhh--------cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy4524 599 PLVYWDALSHMIKGALGTGILT----MPHAFKD--------SGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPS 666 (929)
Q Consensus 599 ~~s~~~a~~~l~~s~iG~GiLs----LP~af~~--------~G~~~gii~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~ 666 (929)
.-|.++=...+.++-+|+|++- =|..-.+ .-.-.+.....+-..+.-|+.+.++-..-.+-..++...
T Consensus 95 efS~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~~WAiYav~glalaY~~yrk~~p 174 (539)
T 4ain_A 95 EFRTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYSTFRVGRK 174 (539)
T ss_dssp SSCHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHCCCCCTCCC
T ss_pred CCcchHHHHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3445555677888889998873 2222111 112234555555566666666666554432221222222
Q ss_pred CCHHHHHHHHhccCCcccc-cccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcC-C-Cc--hHHHHHHHHHH
Q psy4524 667 LTYPEILGAALSEGPARFR-WLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWG-V-TD--LRLYMLVLFPP 741 (929)
Q Consensus 667 ~sy~~l~~~~f~~~~~~~~-~~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~-~-~~--~~~~~~i~~~~ 741 (929)
.+.++..+-.+| +| ..|+.|+ ++|+..++...+...+-+=+....+..-+++..+ + .+ .+..+++....
T Consensus 175 l~iss~l~PllG-----~r~~~G~~G~-~IDilav~atv~GvatSLGlg~~Qi~~Gl~~lfGi~~~~~~~qi~ii~vit~ 248 (539)
T 4ain_A 175 QLLSSAFVPLIG-----EKGAEGWLGK-LIDILAIIATVFGTACSLGLGALQIGAGLSAANIIEDPSDWTIVGIVSVLTL 248 (539)
T ss_dssp SCTTGGGHHHHH-----HHHTTSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCSTTTTTHHHHHHHH
T ss_pred CcHHHHhHhhcC-----CCccCCcchh-hhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Confidence 344444443332 23 4577765 5566655554444444444444444444444433 2 11 22222222222
Q ss_pred HHhh----hcccCchhhhhHHH
Q psy4524 742 LLLI----SWVPNLKYIVPFSS 759 (929)
Q Consensus 742 ~~pl----~~~~~l~~l~~~S~ 759 (929)
+.-. ..-|.+|.|+.+++
T Consensus 249 i~~~Sa~sGl~kGIk~LS~~N~ 270 (539)
T 4ain_A 249 AFIFSAISGVGKGIQYLSNANM 270 (539)
T ss_dssp HHHHHHHC---CCHHHHGGGHC
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 2333 33466666666664
No 14
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=21.99 E-value=7.1e+02 Score=27.89 Aligned_cols=77 Identities=13% Similarity=0.029 Sum_probs=33.7
Q ss_pred ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcC-CCch--HHHHHHHHHHHHhhhcccCc-hhhhhHHHHHH
Q psy4524 687 LAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWG-VTDL--RLYMLVLFPPLLLISWVPNL-KYIVPFSSSAT 762 (929)
Q Consensus 687 ~G~~~~~~v~i~~~i~~~g~~~~y~i~~~~~l~~l~~~~~~-~~~~--~~~~~i~~~~~~pl~~~~~l-~~l~~~S~~~~ 762 (929)
.|+.|+.+=.+.++.+.+|.+.+ +=+....+..-+++..+ +.+. +..+++....+.-.+-...+ |-++++|.+..
T Consensus 190 ~G~~G~~IDilav~at~~G~ats-LGlg~~qi~~Gl~~lfGi~~~~~~qi~ii~vit~~~~~Sa~sGl~kGIk~LS~~N~ 268 (509)
T 2wsw_A 190 NGLFGTVVDNFYLVALILAMGTS-LGLATPLVTECIQYLFGIPHTLQLDAIIISCWILLNAICVAFGLQKGVKIASDVRT 268 (509)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCchhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 47777654444445555555544 33333333333333333 2222 22222223333445555555 44555555444
Q ss_pred HH
Q psy4524 763 GV 764 (929)
Q Consensus 763 ~~ 764 (929)
..
T Consensus 269 ~l 270 (509)
T 2wsw_A 269 YL 270 (509)
T ss_dssp HH
T ss_pred HH
Confidence 33
Done!