Query psy4524
Match_columns 929
No_of_seqs 512 out of 3155
Neff 8.6
Searched_HMMs 13730
Date Fri Aug 16 19:23:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4524.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4524hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2izva1 a.271.1.1 (A:386-429) 11.4 32 0.0023 23.0 0.7 7 4-10 4-10 (44)
2 d1ekza_ d.50.1.1 (A:) Staufen, 10.9 34 0.0025 25.6 0.8 17 4-21 13-29 (76)
3 d1kwia_ d.17.1.3 (A:) Cathelic 7.4 44 0.0032 26.3 0.1 16 16-31 2-17 (98)
4 d2c9wa1 a.271.1.1 (A:149-198) 6.9 62 0.0045 22.1 0.7 8 3-10 14-21 (50)
5 d1pb6a1 a.4.1.9 (A:14-85) Hypo 6.3 1.3E+02 0.0094 21.6 2.4 31 3-33 12-49 (72)
6 d2np5a1 a.4.1.9 (A:9-77) Trans 6.0 88 0.0064 22.3 1.2 33 2-34 8-47 (69)
7 d2g7sa1 a.4.1.9 (A:3-76) Putat 5.8 92 0.0067 22.6 1.2 32 3-34 12-50 (74)
8 d2fx0a1 a.4.1.9 (A:4-76) Hemol 5.6 1.2E+02 0.0089 21.9 1.8 32 3-34 12-50 (73)
9 d2a65a1 f.54.1.1 (A:5-513) Na( 5.5 1.2E+03 0.086 22.9 25.0 32 598-629 3-35 (509)
10 d1di2a_ d.50.1.1 (A:) Double-s 5.0 79 0.0058 22.9 0.3 18 4-21 6-23 (69)
No 1
>d2izva1 a.271.1.1 (A:386-429) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.39 E-value=32 Score=22.95 Aligned_cols=7 Identities=29% Similarity=0.757 Sum_probs=4.6
Q ss_pred hhHHhhh
Q psy4524 4 QYELCRR 10 (929)
Q Consensus 4 ~~~~~~~ 10 (929)
-|||||+
T Consensus 4 LQhLCR~ 10 (44)
T d2izva1 4 LQHICRT 10 (44)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3677775
No 2
>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=10.95 E-value=34 Score=25.62 Aligned_cols=17 Identities=12% Similarity=0.323 Sum_probs=10.6
Q ss_pred hhHHhhhcCCCCCChhhH
Q psy4524 4 QYELCRRRKIPSLTYPQI 21 (929)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (929)
-||+|++|++| ++|..+
T Consensus 13 L~E~~q~~~~~-~~y~~~ 29 (76)
T d1ekza_ 13 VHEIGIKRNMT-VHFKVL 29 (76)
T ss_dssp HHHHHHHTTCC-CEEEES
T ss_pred HHHHHHhCCCC-CeEEEE
Confidence 36677777776 666543
No 3
>d1kwia_ d.17.1.3 (A:) Cathelicidin motif of protegrin-3 {Pig (Sus scrofa) [TaxId: 9823]}
Probab=7.42 E-value=44 Score=26.29 Aligned_cols=16 Identities=13% Similarity=0.108 Sum_probs=9.0
Q ss_pred CChhhHHHHHHHhhcc
Q psy4524 16 LTYPQIAEVFDHYYGD 31 (929)
Q Consensus 16 ~~~~~~~~~~~~~~~~ 31 (929)
|||+|.++.|.+.|-.
T Consensus 2 lsy~eav~~Al~~~N~ 17 (98)
T d1kwia_ 2 LSYREAVLRAVDRLNE 17 (98)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHc
Confidence 5566666666555544
No 4
>d2c9wa1 a.271.1.1 (A:149-198) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.91 E-value=62 Score=22.14 Aligned_cols=8 Identities=38% Similarity=0.675 Sum_probs=5.3
Q ss_pred hhhHHhhh
Q psy4524 3 AQYELCRR 10 (929)
Q Consensus 3 ~~~~~~~~ 10 (929)
.-|||||.
T Consensus 14 SLQHLCR~ 21 (50)
T d2c9wa1 14 SLQHLCRL 21 (50)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 34778874
No 5
>d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=6.32 E-value=1.3e+02 Score=21.62 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=25.9
Q ss_pred hhhHHhhhcCCCCCChhhHHHHH-------HHhhccCc
Q psy4524 3 AQYELCRRRKIPSLTYPQIAEVF-------DHYYGDHD 33 (929)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 33 (929)
+-.++.++++..-+|.+++++-+ -+||+|-|
T Consensus 12 aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~y~~F~~K~ 49 (72)
T d1pb6a1 12 AALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKE 49 (72)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHSSSHH
T ss_pred HHHHHHHHhCccccCHHHHHHHhCCChHHHHHHCcCHH
Confidence 34578899999999999999987 78888844
No 6
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=6.03 E-value=88 Score=22.31 Aligned_cols=33 Identities=12% Similarity=0.279 Sum_probs=27.7
Q ss_pred hhhhHHhhhcCCCCCChhhHHHHH-------HHhhccCcc
Q psy4524 2 RAQYELCRRRKIPSLTYPQIAEVF-------DHYYGDHDV 34 (929)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 34 (929)
+|-.++..+++.--+|.+++++-+ -+||+|.|.
T Consensus 8 ~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~iy~~F~sK~~ 47 (69)
T d2np5a1 8 AALFDVAAESGLEGASVREVAKRAGVSIGAVQHHFSTKDE 47 (69)
T ss_dssp HHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhCccccCHHHHHHHhCCCHHHHHHHCcCHHH
Confidence 355678899999999999999988 788998664
No 7
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=5.79 E-value=92 Score=22.62 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=26.6
Q ss_pred hhhHHhhhcCCCCCChhhHHHHH-------HHhhccCcc
Q psy4524 3 AQYELCRRRKIPSLTYPQIAEVF-------DHYYGDHDV 34 (929)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 34 (929)
|-.++..+++...+|.+++++-+ -+||+|-|.
T Consensus 12 aa~~l~~~~G~~~~s~~~Ia~~agvs~~~iY~~F~sK~~ 50 (74)
T d2g7sa1 12 CARTLIIRGGYNSFSYADISQVVGIRNASIHHHFPSKSD 50 (74)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHhCccccCHHHHHHHHCcCcchHHHHCcCHHH
Confidence 44577889999999999999988 788888553
No 8
>d2fx0a1 a.4.1.9 (A:4-76) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]}
Probab=5.60 E-value=1.2e+02 Score=21.94 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=26.8
Q ss_pred hhhHHhhhcCCCCCChhhHHHHH-------HHhhccCcc
Q psy4524 3 AQYELCRRRKIPSLTYPQIAEVF-------DHYYGDHDV 34 (929)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 34 (929)
|-.++..+++...+|.+++++-+ -+||+|.|.
T Consensus 12 aa~~l~~~~G~~~~si~~Ia~~agvs~~~~Y~~F~~K~~ 50 (73)
T d2fx0a1 12 AAKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFNGKEN 50 (73)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHHTSHHH
T ss_pred HHHHHHHHhCcccCcHHHHHHHHCcChhHHHHHCcCHHH
Confidence 44678889999999999999988 788998654
No 9
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=5.53 E-value=1.2e+03 Score=22.93 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=24.9
Q ss_pred CCcchHHHHHHHHhhhhhhhhc-hhHHHHhhcC
Q psy4524 598 KPLVYWDALSHMIKGALGTGIL-TMPHAFKDSG 629 (929)
Q Consensus 598 ~~~s~~~a~~~l~~s~iG~GiL-sLP~af~~~G 629 (929)
+=.|..+-++..+...+|.|-+ =.||-..+-|
T Consensus 3 ~W~s~~~fila~~g~avGlGNiWrFPyl~~~nG 35 (509)
T d2a65a1 3 HWATRLGLILAMAGNAVGLGNFLRFPVQAAENG 35 (509)
T ss_dssp CCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTT
T ss_pred CCCChHHHHHHHHHHHhcccHHHhhhHHHHhcC
Confidence 3457788889999999999866 6998876554
No 10
>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]}
Probab=5.04 E-value=79 Score=22.85 Aligned_cols=18 Identities=17% Similarity=0.082 Sum_probs=11.8
Q ss_pred hhHHhhhcCCCCCChhhH
Q psy4524 4 QYELCRRRKIPSLTYPQI 21 (929)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (929)
-||+|.+++.|.-.|..+
T Consensus 6 LqE~~q~~~~~~P~Y~~~ 23 (69)
T d1di2a_ 6 LQELAVQKGWRLPEYTVA 23 (69)
T ss_dssp HHHHHHHHTCCCCEEEEE
T ss_pred HHHHHHHcCCCCCeEEEE
Confidence 467777777776666543
Done!