RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4524
(929 letters)
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein.
This transmembrane region is found in many amino acid
transporters including UNC-47 and MTR. UNC-47 encodes a
vesicular amino butyric acid (GABA) transporter, (VGAT).
UNC-47 is predicted to have 10 transmembrane domains.
MTR is a N system amino acid transporter system protein
involved in methyltryptophan resistance. Other members
of this family include proline transporters and amino
acid permeases.
Length = 406
Score = 146 bits (370), Expect = 8e-38
Identities = 73/280 (26%), Positives = 131/280 (46%), Gaps = 10/280 (3%)
Query: 191 IIVSFGFLVVCELGASCIYVIFVAGNLKAVADQYYGDHDIR--FYMLLIFFPILLLCWIR 248
+++ F LV G Y+IF NL A+ D ++ I +++++ + L +I
Sbjct: 86 LLILFAILVNL-FGVCISYLIFAGDNLPAIFDSFFDTCHISLVYFIIIFGLIFIPLSFIP 144
Query: 249 NLKLLAPFSTLAT----AITIASFGITLYYVFTDVP-SISERNPGGNLKELPLFFGTVMF 303
NL L+ S +A I I + V T L L L G ++F
Sbjct: 145 NLSALSILSLVAAVSSLYIVILVLSVAELGVLTAQGVGSLGAKTNIKLARLFLAIGIIVF 204
Query: 304 SMSAIGIIMPLENEMRSPSKFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPSTSGSVTL 363
+ +++P++N M+SPSKF + VL A++ + ++Y G GYL +G + G++ L
Sbjct: 205 AFEGHAVLLPIQNTMKSPSKFKAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILL 264
Query: 364 NLPAGDLLAQSVKVMLALAIFCTFALPQYIVYNIVWNCYLKTHM--EKNSLATMWIYVLK 421
NLP D L ++L L + ++ L + + IV N + + N + + V++
Sbjct: 265 NLPKSDWLIDIANLLLVLHLLLSYPLQAFPIRQIVENLLFRKGASGKHNPKSKLLRVVIR 324
Query: 422 TTICIITFAFAIMIPNLELFISLIGSLCLPFMAIGLPALL 461
+ + +IT+ AI +P L F+SL+G+ + LP L
Sbjct: 325 SGLVVITYLIAISVPFLGDFLSLVGATSGAPLTFILPPLF 364
Score = 145 bits (369), Expect = 1e-37
Identities = 86/337 (25%), Positives = 156/337 (46%), Gaps = 21/337 (6%)
Query: 603 WDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRK 662
W A+ ++IK +G G+L++P+AFK G++ G + V +G + + +LV+ + + K
Sbjct: 6 WQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKYVDKVK 65
Query: 663 RIPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVC 722
+Y ++ +R P G+ L A++V+ G YL+F NL +
Sbjct: 66 GKRRKSYGDLG----------YRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIF 115
Query: 723 VRFWGVTDLRL--YMLVLFPPLLLISWVPNLKYIVPFSSSATGVMFVSLAITMY---YIL 777
F+ + L ++++ + +S++PNL + S A + + + +
Sbjct: 116 DSFFDTCHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLSVAELGV 175
Query: 778 GDFPSFSDRTPVG--HLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQFTARLGVLNVS 835
L+ L L +G+ +F+ V +P++N M+ P +F A VL +
Sbjct: 176 LTAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFKAMTKVLLTA 235
Query: 836 SAINTTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTLAVSVKLLLSVSILFTFALPHFIV 895
I T ++ GL+ YL +G+ V+G+I LNLP+ D L LLL + +L ++ L F +
Sbjct: 236 IIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAFPI 295
Query: 896 YDIVWN---RYLKLRMNKSPSHTALEYGFRTLIVVIT 929
IV N R + P L R+ +VVIT
Sbjct: 296 RQIVENLLFRKGASGKHN-PKSKLLRVVIRSGLVVIT 331
Score = 67.3 bits (165), Expect = 1e-11
Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 16/180 (8%)
Query: 479 TLFHMLKASLGTGILAIPHAFKNSGYLVGIIGTIVIGLFSCYCIHMMVVAQYVLCKKKKI 538
+F+++KA +G G+L++P+AFK G++ G+I +++GL S Y +H++V + K K
Sbjct: 8 AVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKYVDKVKGK 67
Query: 539 PSLTYPEIAETALSEGPPSVRWLAPYGR-IVSFGFLVVCELGASCIYVIFVAGNLKAVSK 597
+Y ++ P G+ ++ F LV G Y+IF NL A+
Sbjct: 68 RRKSYGDLGYRLFG----------PKGKLLILFAILVNL-FGVCISYLIFAGDNLPAIFD 116
Query: 598 KPLVYWD-ALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQY 656
+L + I + G++ +P +F + L L VA + I +L A+
Sbjct: 117 SFFDTCHISLVYFI---IIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLSVAEL 173
Score = 37.3 bits (87), Expect = 0.038
Identities = 19/102 (18%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 24 VFDHYYGDHDVR--YYVLIIFLPLLLLCWVRNLKFLAPFSAFASGVTIVSFGITLYYVFT 81
+FD ++ + Y+++I L + L ++ NL L+ S A+ ++ + + L
Sbjct: 114 IFDSFFDTCHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSL--YIVILVLSVA 171
Query: 82 DIPSLKDRTVVAE-------LKELPLFFGTVMFSMSAIGIVI 116
++ L + V + L L L G ++F+ +++
Sbjct: 172 ELGVLTAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLL 213
Score = 35.7 bits (83), Expect = 0.12
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 114 IVILCAVMVPNLELFISFNGALCLPFMSIGFPAIVDLLTFWDHHQGAGKVFF-VLKNILV 172
I L A+ VP L F+S GA ++ P + L + K++ + +++
Sbjct: 330 ITYLIAISVPFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVIC 389
Query: 173 ILIGLVGFVTGLNASVS 189
I+IGL+ G+ +
Sbjct: 390 IVIGLLLMAYGVAGLII 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and
metabolism].
Length = 415
Score = 67.7 bits (166), Expect = 1e-11
Identities = 52/287 (18%), Positives = 98/287 (34%), Gaps = 22/287 (7%)
Query: 609 MIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLT 668
+ A+G G+L +P AF G+ G L + T + +L+ A +
Sbjct: 18 LAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEA----LLSSPNGKAS 73
Query: 669 YPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLSQVCVRFWGV 728
++ L G L + G L Y++ I + L+ +G+
Sbjct: 74 ITSLVEDYLG----------KKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGL 123
Query: 729 TDL--RLYMLVLFPPLLLISWVPNLKYIVPFSSSATGVMFVSLAITMYY----ILGDFPS 782
L +L L+ L +SW+ ++ +S + L + + Y
Sbjct: 124 NPLPRKLGSLIFALVLAFLSWL-GTLAVLKITSLLVFGKVIYLVLLVVYLIPHWNPANLF 182
Query: 783 FSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQHPRQFTARLGVLNVSSAINTTI 842
L L + V +FS G L N M+ + R + + S I +
Sbjct: 183 ALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRK-AILIGSLIALVL 241
Query: 843 FAAFGLLAYLKYGDEVQGSITLNLPQEDTLAVSVKLLLSVSILFTFA 889
+ G + +G V G+I Q +L ++ +++ IL
Sbjct: 242 YILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIAL 288
Score = 53.4 bits (129), Expect = 3e-07
Identities = 56/286 (19%), Positives = 101/286 (35%), Gaps = 17/286 (5%)
Query: 190 AIIVSFGFLVVCELGASCIYVIFVAGNLKAVADQYYGDHDI--RFYMLLIFFPILLLCWI 247
I++ + G Y++ + L + +G + + + L+ + L W+
Sbjct: 87 GILIGLSYFFAL-YGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWL 145
Query: 248 RNLKLLAPFSTLATAITIASFGITLYYVFTDVPSISERNP---GGNLKELPLFFGTVMFS 304
L +L S L I + +Y + P+ P K L L +FS
Sbjct: 146 GTLAVLKITSLLVFGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFS 205
Query: 305 MSAIGIIMPLENEMRSPSKFTSKLGVLNVAMLSIALIYTGFGFFGYLKYGPSTSGSVTLN 364
G I L N MR SK + + + L ++Y GFF + +G G++
Sbjct: 206 FGFHGNIPSLVNYMRKNSKKAVRK-AILIGSLIALVLYILVGFFVFGCFGSLVFGNILAA 264
Query: 365 LPAGD-------LLAQSVKVMLALAIFCTFAL-PQYIVYNIVWNCYLKTHMEKNSLATMW 416
+ S + +AL IF FA+ ++ + L +K++
Sbjct: 265 KEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGR 324
Query: 417 IYVLKTTICIITFAFAIMIPN-LELFISLIGSLCLPFMAIGLPALL 461
T + FA++ P + + G L A +PALL
Sbjct: 325 KKTGLLTF-LPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALL 369
Score = 37.6 bits (88), Expect = 0.026
Identities = 17/132 (12%), Positives = 39/132 (29%), Gaps = 14/132 (10%)
Query: 483 MLKASLGTGILAIPHAFKNSGYLVGIIGTIVIGLFSCYCIHMMVVAQYVLCKKKKIPSLT 542
+ ++G G+L +P AF G+ G++ I+ + + +++ A +
Sbjct: 18 LAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEA----LLSSPNGKAS 73
Query: 543 YPEIAETALSEGPPSVRWLAPYGRIVSFGFLVVCELGASCIYVIFVAGNLKAVSKKPLVY 602
+ E L G I+ G Y++ + L +
Sbjct: 74 ITSLVEDYLG----------KKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGL 123
Query: 603 WDALSHMIKGAL 614
+
Sbjct: 124 NPLPRKLGSLIF 135
>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional.
Length = 467
Score = 41.8 bits (98), Expect = 0.002
Identities = 51/195 (26%), Positives = 79/195 (40%), Gaps = 28/195 (14%)
Query: 278 DVPSISERNPGGNLKE-LPLFFGTVMFSMSAIGIIMPLENEMRSPSKFTSKLGVLNVAML 336
D I N G E L +F +F ++A + M + N RS KF +AM
Sbjct: 245 DNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTN--RSVGKFVL---ASTIAMG 299
Query: 337 SIALIYTGFGFFGYLKYGPSTSGSVTL-----NLPAGDLLAQSVKVMLA-----LAIFCT 386
+Y FFGY+ +G + +GSV L N PA + V V L L + C
Sbjct: 300 MCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACR 359
Query: 387 FALPQYIVYNIVWNCYLKTHMEKNSLATMWIYVLKTTICIITFAFAIMIPNLELFISLIG 446
AL Y+++ K K+ +A + T+ ++ + IP + + G
Sbjct: 360 NAL-----YDVIGWDARKVAFWKHCIAVV-------TLSVVMLLCGLFIPKINTVLGFAG 407
Query: 447 SLCLPFMAIGLPALL 461
S+ + LPALL
Sbjct: 408 SISGGLLGFILPALL 422
Score = 34.5 bits (79), Expect = 0.28
Identities = 16/56 (28%), Positives = 34/56 (60%)
Query: 473 PLGYSETLFHMLKASLGTGILAIPHAFKNSGYLVGIIGTIVIGLFSCYCIHMMVVA 528
P G + + F++ +++G GI+ +P A +SG ++ +I I+I + + I+ + VA
Sbjct: 59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVA 114
Score = 30.6 bits (69), Expect = 4.3
Identities = 16/80 (20%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 114 IVILCAVMVPNLELFISFNGALCLPFMSIGFPAIVDLLTFWDHHQGAGKVFFVLKNILVI 173
+++LC + +P + + F G++ + PA++ + + Q G F+ + +V+
Sbjct: 388 VMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGP-FYYISTYVVL 446
Query: 174 LIGLVGFVTGLNASVSAIIV 193
+ G++ V G A++ + V
Sbjct: 447 ITGVIAIVFGTGATIWGVTV 466
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.144 0.444
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 48,962,960
Number of extensions: 5112397
Number of successful extensions: 7410
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7320
Number of HSP's successfully gapped: 268
Length of query: 929
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 823
Effective length of database: 6,236,078
Effective search space: 5132292194
Effective search space used: 5132292194
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 64 (28.4 bits)