RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4524
(929 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 2e-05
Identities = 102/601 (16%), Positives = 165/601 (27%), Gaps = 240/601 (39%)
Query: 125 LELFISFNGALCLPFMSIGFPAIVDLLTFWDHHQGAGKVFFVLKNILV-----ILIG--- 176
EL F +G+ + L+ G+ VL L L G
Sbjct: 58 AELVGKF----------LGY--VSSLV----EPSKVGQFDQVLNLCLTEFENCYLEGNDI 101
Query: 177 ------LVGFVTGLNASVSAIIVSF-----------------GFLVVCELGASCIYVIFV 213
L+ +I ++ G + + IF
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF- 160
Query: 214 AGNLKAVADQYYGDHDIRFYMLLIFF---PILLLCWIRNL-KLLAPFS-TLATAITIASF 268
G Q G+ D F L + +L+ I+ + L+ T A + +
Sbjct: 161 GG-------Q--GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 269 GITLYYVFTDVPSISERNPGGNLKELPLFFGTVMFSMSAIGI------IMPLENEMRSPS 322
G+ + + P + + ++ S IG+ ++ + +P
Sbjct: 212 GLNILEWLEN----PSNTPDKD------YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG 261
Query: 323 KFTSKL-GVLN-----VAMLSIALIYTGFGFFG----YLKY----G-------PSTSGSV 361
+ S L G V ++IA + FF + G P+TS
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS--- 318
Query: 362 TLNLPAGDLLAQSVKV-------MLALAIFCTFALPQYIVYNIV--WNCYLKTHMEKNSL 412
LP +L S++ ML+++ L Q V + V N +L
Sbjct: 319 ---LPP-SILEDSLENNEGVPSPMLSIS-----NLTQEQVQDYVNKTNSHLP-------- 361
Query: 413 ATMWIYVLKTTICIITFAFAIMIPNLELFISLI---------G---SLCLPFMAIGLPAL 460
++ ISL+ G SL GL
Sbjct: 362 -----------------------AGKQVEISLVNGAKNLVVSGPPQSLY------GLNLT 392
Query: 461 LRSTAVQPCLD---IPLGYSETLFHMLKASLGTGILAI--P-HAFKNSGYLVGIIGTIVI 514
LR LD IP +SE K L + P H S LV I
Sbjct: 393 LRKAKAPSGLDQSRIP--FSER-----KLKFSNRFLPVASPFH----SHLLVPASDLINK 441
Query: 515 GLFSCYCIHMMVVAQYVLCKKK--KIP---------------SLTYPEIAETALSEGPPS 557
L V V K +IP S++ I + + P
Sbjct: 442 DL----------VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS-ERIVDCIIRL-P-- 487
Query: 558 VRWLAPYGRIVSFGFLVVCELGASCIYVIFVAGNLKAVSKKPLVYWDALSHMIKGALGTG 617
V+W + A+ I + F G + L+H K GTG
Sbjct: 488 VKWET------------TTQFKATHI-LDFGPGGASGLGV--------LTHRNKD--GTG 524
Query: 618 I 618
+
Sbjct: 525 V 525
Score = 46.6 bits (110), Expect = 4e-05
Identities = 93/605 (15%), Positives = 165/605 (27%), Gaps = 238/605 (39%)
Query: 438 LEL---FISLIGSLCLPFMAIGLPALLRSTAVQPCLDIPLGYSETLFHMLKASLGTGILA 494
EL F+ + SL P + L++ L E + L+ G I
Sbjct: 58 AELVGKFLGYVSSLVEP---------SKVGQFDQVLNLCLTEFENCY--LE---GNDI-- 101
Query: 495 IPHAFKNSGYLVGIIGTIVI---GLFSCYCIHMMVVAQYVLCKKKKIPSLTYPEIAETAL 551
HA L+ T ++ L Y K P + + + +AL
Sbjct: 102 --HALAAK--LLQENDTTLVKTKELIKNY---------ITARIMAKRP---FDKKSNSAL 145
Query: 552 SEGPPSVRWLAPYGRIVSFGFLVVCELGASCIYVIFVA-GNLKAVSKKPLVYWDALSHM- 609
G + + IF GN Y++ L +
Sbjct: 146 FRAVGE---------------------GNAQLVAIFGGQGN-------TDDYFEELRDLY 177
Query: 610 ----------IKGA-----------------LGTGI-----LTMPHAFKDSGYLLGFLGT 637
IK + G+ L P D YLL +
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL----S 233
Query: 638 VAIGAFTTSC--IQILVRAQYE-LCRRKRIPSLTYPEILGAALSEGPARFRWLAPYGRGL 694
+ I SC I ++ A Y + +LG E + + + +GL
Sbjct: 234 IPI-----SCPLIGVIQLAHYVVTAK-----------LLGFTPGELRSYLKGATGHSQGL 277
Query: 695 SFTAMIV---------DEIGALCVYLLF-IASNLSQVCVRFWGVTDLRLYMLVLF----- 739
TA+ + + +LF I C + T L +L
Sbjct: 278 -VTAVAIAETDSWESFFVSVRKAITVLFFIGVR----CYEAYPNTSLPPSILEDSLENNE 332
Query: 740 --P-PLLLISWVPN---LKYIVPFSSS--ATGVMFVSLAIT-MYYILGDFPS-------- 782
P P+L IS + Y+ +S A + +SL ++ P
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 783 ----------------FSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMP-----LENEMQH 821
FS+R LP V P L
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRFLP--------------VASPFHSHLLVPASDL 438
Query: 822 PRQFTARLGVLNVSSAINTTIFAAFGLLAYLKYGDEVQ---GSITLNLPQEDTLAVSVKL 878
+ + V + I ++ F G +++ GSI+ + V
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFD-------GSDLRVLSGSISERI---------VDC 482
Query: 879 LLSVSILFT----FALPHFIVYD--------IVWNRYLK---LR------MNKSPSHTAL 917
++ + + + F H + + ++ +R +R ++ +P
Sbjct: 483 IIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINP---DD 539
Query: 918 EYGFR 922
+YGF+
Sbjct: 540 DYGFK 544
Score = 43.9 bits (103), Expect = 3e-04
Identities = 77/426 (18%), Positives = 129/426 (30%), Gaps = 138/426 (32%)
Query: 592 LKAVSKKPLVYWDALSHMIKGALGTGILTMPHA-----------FKDS------GY---- 630
+ A S +PL LSH G+L +L P A F G+
Sbjct: 1 MDAYSTRPLT----LSH---GSLEHVLLV-PTASFFIASQLQEQFNKILPEPTEGFAADD 52
Query: 631 -------LLG-FLGTVA-------IGAFTTSCIQILVRA---QYELCRRKRIPSLTYPEI 672
L+G FLG V+ +G F + + + Y L I +L ++
Sbjct: 53 EPTTPAELVGKFLGYVSSLVEPSKVGQFD-QVLNLCLTEFENCY-L-EGNDIHALAA-KL 108
Query: 673 LGAALSEGPARFRWLAPYGRGLSFTAMIV--DEIGALCVYLLF--IASNLSQVCVRFWG- 727
L + + Y TA I+ LF + +Q+ F G
Sbjct: 109 LQENDTTLVKTKELIKNY-----ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Query: 728 ------VTDLR-LYMLVLFPPLL--LISWVPNLKYIVPFSSSATGVMFVSLAITMYYILG 778
+LR LY + L+ LI + + + +L + G
Sbjct: 164 GNTDDYFEELRDLY--QTYHVLVGDLIKFSAET--LSELIRT-------TLDAEKVFTQG 212
Query: 779 -DFPSF---SDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLENEMQ-------------H 821
+ + TP D L SI ++ PL +Q
Sbjct: 213 LNILEWLENPSNTP-----DKDY--------LLSIPISCPLIGVIQLAHYVVTAKLLGFT 259
Query: 822 PRQFTARL-GVLNVSSAINT-TIFAA------FGLLA--YLKY----GDEVQGSI-TLNL 866
P + + L G S + T A F + + G + +L
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL 319
Query: 867 PQ---EDTLAVSVKL---LLSVSILFTFALPHFIVYDIVWNRYLKLRMNKSPSHTALEYG 920
P ED+L + + +LS+S L + ++ N +L +L G
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT---NSHLP---AGKQVEISLVNG 373
Query: 921 FRTLIV 926
+ L+V
Sbjct: 374 AKNLVV 379
Score = 37.0 bits (85), Expect = 0.040
Identities = 33/184 (17%), Positives = 59/184 (32%), Gaps = 70/184 (38%)
Query: 460 LLRSTAV-QPCLDIPLGYSETLFHMLKA-------------SLG--------TGILAIPH 497
LL +T QP L + F LK+ SLG +++I
Sbjct: 1725 LLSATQFTQPAL---TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIES 1781
Query: 498 AFKNSGYLV---GIIGTIVI----GLFSCYCIHMMVVAQYVLCKKKKIPSLTYPEIAETA 550
+ +V G+ + + S Y M+ + P ++ A
Sbjct: 1782 LVE----VVFYRGMTMQVAVPRDELGRSNY--GMIAIN----------PGRVAASFSQEA 1825
Query: 551 LSEGPPSVRWLAPYGRIVSFGFLVV---CELGASCIYVIFVAGNLKAVSKKPLVYWDALS 607
L V G +V +V E + YV AG+L+A+ D ++
Sbjct: 1826 LQYVVERV--GKRTGWLVE----IVNYNVE---NQQYVA--AGDLRAL--------DTVT 1866
Query: 608 HMIK 611
+++
Sbjct: 1867 NVLN 1870
Score = 32.3 bits (73), Expect = 1.1
Identities = 57/368 (15%), Positives = 100/368 (27%), Gaps = 150/368 (40%)
Query: 15 SLTY-PQIAEVFDHYYGDHDVRYYV--LIIFLPLLLLCWVRNLKFLAPFSAFASGVTIVS 71
+ Y ++ +++ Y V LI F L +R F G+ I+
Sbjct: 166 TDDYFEELRDLYQTY------HVLVGDLIKFSAETLSELIRTTLDAEKV--FTQGLNILE 217
Query: 72 FGITLYYVFTDIPSLKDRTVVAELKELPLFFGTVMFSMSAIGIVILCAVMV--------P 123
+ L++ + + + ++ S IG++ L +V P
Sbjct: 218 W-------------LENPSNTPD----KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260
Query: 124 NLELFISFNGALCLPFMSIG-----FPAIVDLLTFWDHHQGAGKVFFVL-KNILVIL--I 175
EL GA S G A D + W+ FFV + + +L I
Sbjct: 261 G-ELRSYLKGATG---HSQGLVTAVAIAETD--S-WES-------FFVSVRKAITVLFFI 306
Query: 176 GLVG---F-VTGLNASVSAIIVSFGF------LVVCEL-----------------GASCI 208
G+ + T L S+ + L + L +
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 209 YV-------IFV-AG-------------NLKAVA--DQY---YGDHDIRFYMLLIFFPIL 242
+ V +G KA + DQ + + ++F F P+
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR--FLPV- 423
Query: 243 LLCWIRNLKLLAPF--STLATA--------------ITIASFGITLYYVFTDVPSISERN 286
+PF L A I +Y F
Sbjct: 424 ----------ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD--------- 464
Query: 287 PGGNLKEL 294
G +L+ L
Sbjct: 465 -GSDLRVL 471
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 3e-04
Identities = 81/502 (16%), Positives = 140/502 (27%), Gaps = 186/502 (37%)
Query: 526 VVAQYVLCKKKKIPSLTYPEIAETALSEGPPSVRWLAPYGRIVSFGFLVVCELGASCIYV 585
V A+Y + + + L AL E P+ + + G G G + +
Sbjct: 125 VFAKYNVSRLQPYLKLR------QALLELRPA-KNVLIDGV---LGS------GKTWV-A 167
Query: 586 IFVAGNLKAVSKKPL-VYW----------------DALSHMIKGALGTGILTMPHA---- 624
+ V + K K ++W L + I + +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 625 ----------FKDSGY---LLGFLGTV----AIGAFTTSCIQILV--R------------ 653
K Y LL L V A AF SC +IL+ R
Sbjct: 228 HSIQAELRRLLKSKPYENCLL-VLLNVQNAKAWNAFNLSC-KILLTTRFKQVTDFLSAAT 285
Query: 654 ----------------------AQYELCRRKRIPS---LTYP---EILGAALSEGPARF- 684
+Y CR + +P T P I+ ++ +G A +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 685 RWLAPYGRGLSFTAMIVDEIGAL-------CVYLLFI---ASNL-SQVCVRFWG---VTD 730
W + T +I + L L + ++++ + + W +D
Sbjct: 346 NWK--HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 731 LRLYMLVLFPPLLLISWVPNLKYIVP---FSSSATGVMFVSL---AITMYYILGDFPSFS 784
+ + + L L+ +P +L + Y I F S
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS-D 462
Query: 785 DRTP----------VG-HLS------DLPLFVGVTL---FSLSSIGVTMPLENEMQHP-R 823
D P +G HL + LF V L F LE +++H
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF----------LEQKIRHDST 512
Query: 824 QFTARLGVLNVSSAINTTIFAAFGLLAYLKYGDEVQGSITLNLPQEDTLAVSVKLLLSVS 883
+ A +LN + Y Y I N P+ + L V+
Sbjct: 513 AWNASGSILNTLQQLKF----------YKPY-------ICDNDPKYERL---------VN 546
Query: 884 ILFTFAL---PHFIVY---DIV 899
+ F + I D++
Sbjct: 547 AILDFLPKIEENLICSKYTDLL 568
Score = 33.3 bits (75), Expect = 0.45
Identities = 29/176 (16%), Positives = 53/176 (30%), Gaps = 43/176 (24%)
Query: 773 MYYI-LGDFPSFSDRTPVGHLSDLPLFVGVTLFSLSSIGVTMPLE--------NEMQHPR 823
++++ L + S T + L L + S S + L + +
Sbjct: 184 IFWLNLKN--CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 824 QFTARLGVL-NVSSAINTTIFAAFG-----LL--AYLKYGDEVQGSITLNLPQED----- 870
+ L VL NV N + AF LL + + D + + T ++ +
Sbjct: 242 PYENCLLVLLNVQ---NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 871 TLAVSVKLLLSVSILFTFALPH-------FIVYDIV---------WNRYLKLRMNK 910
T LLL LP + I W+ + + +K
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Score = 32.5 bits (73), Expect = 0.78
Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 20/137 (14%)
Query: 4 QYELCRRRKIPSLTYPQIAEVFDHYYGDH--DVRYYVLIIFLPLLLLCWVRNLKFL---- 57
Y + + L P + + F + G H ++ + + ++ L + +FL
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL----DFRFLEQKI 507
Query: 58 ----APFSAFASGVTIVSFGITLY--YVFTDIPSLKDRTVVAELKELPLFFGTVMFSMSA 111
++A S + + + Y Y+ + P +R V A L LP +
Sbjct: 508 RHDSTAWNASGSILNTLQ-QLKFYKPYICDNDPKY-ERLVNAILDFLPK-IEENLICSKY 564
Query: 112 IGIVILCAVMVPNLELF 128
++ + A+M + +F
Sbjct: 565 TDLLRI-ALMAEDEAIF 580
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.18
Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Query: 249 NLKLLAPFSTLATAI--TI 265
+LKL A S A AI T+
Sbjct: 28 SLKLYADDSAPALAIKATM 46
Score = 29.1 bits (64), Expect = 3.8
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 818 EMQHPRQFTARLGVLNVSSA----INTTI 842
E Q ++ A L + SA I T+
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_E
Length = 488
Score = 32.4 bits (73), Expect = 0.67
Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 13/95 (13%)
Query: 36 YYVLIIFLPLLLLCWVRNLKFLAPFSAFASGVT-----IVSFGITLYYVFTDIPSLKDRT 90
+Y++ I P +L+ + L + P A T +++ I L+ + +P
Sbjct: 220 FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 279
Query: 91 VVAELKELPLFFGTVMFSMSAIGIVILCAVMVPNL 125
PL ++F M +++ V+V N+
Sbjct: 280 --------PLIGKYLIFVMFVSLVIVTNCVIVLNV 306
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 31.2 bits (70), Expect = 1.3
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 118 CAVMVPNLELFISFNGALCLPFMSIGFPAIVDLLTFWDHHQGAGKVFFV 166
A+ +P E I F+ + + G + TFWD K+++V
Sbjct: 174 IAIELPPNE--ILFSENNDMDNNNDGVDELNKKCTFWDAIS---KLYYV 217
>4aq5_C Acetylcholine receptor delta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_C
Length = 522
Score = 30.9 bits (69), Expect = 2.2
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 12/94 (12%)
Query: 36 YYVLIIFLPLLLLCWVRNLKFLAPFSA----FASGVTIVSFGITLYYVFTDIPSLKDRTV 91
+YV+ P +L+ ++ L F P + + +++ + L +P
Sbjct: 248 FYVINFITPCVLISFLAALAFYLPAESGEKMSTAICVLLAQAVFLLLTSQRLPETALAV- 306
Query: 92 VAELKELPLFFGTVMFSMSAIGIVILCAVMVPNL 125
PL +MF MS + V++ +V N
Sbjct: 307 -------PLIGKYLMFIMSLVTGVVVNCGIVLNF 333
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1
Length = 260
Score = 30.3 bits (67), Expect = 2.9
Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 36 YYVLIIFLPLLLLCWVRNLKFLAPFSAFASGVTIVSFGITLYYVFTDIPSLKDRTVVAEL 95
+Y++ I P +L+ + L + P +G + I++ T L + V
Sbjct: 3 FYIINIIAPCVLISSLVVLVYFLPAQ---AGGQKCTLSISVLLAQTIFLFLIAQKVPETS 59
Query: 96 KELPLFFGTVMFSMSAIGIVILCAVMVPNL 125
+PL ++F M ++++ V+V N+
Sbjct: 60 LNVPLIGKYLIFVMFVSMLIVMNCVIVLNV 89
>4aq5_B Acetylcholine receptor beta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_B
Length = 493
Score = 30.1 bits (67), Expect = 3.9
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 36 YYVLIIFLPLLLLCWVRNLKFLAPFSAFASGVTIVSFGITLYYVFTDIPSLKDRTVVAEL 95
+Y++ +P +L+ + L F P A +S I+ T L V
Sbjct: 243 FYIVYTIVPCILISILAILVFYLPPDAGEK----MSLSISALLALTVFLLLLADKVPETS 298
Query: 96 KELPLFFGTVMFSMSAIGIVILCAVMVPNL 125
+P+ +MF M + ++ +V+V NL
Sbjct: 299 LSVPIIISYLMFIMILVAFSVILSVVVLNL 328
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 29.9 bits (68), Expect = 4.1
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 555 PPSVRWLAPYGRIVSFGFL 573
L P G ++ G L
Sbjct: 227 NELAFSLRPNGHFLTIGLL 245
>2bpa_1 Protein (subunit of bacteriophage PHIX174); protein-DNA complex,
single strand, icosahedral virus, virus/DNA complex;
HET: DNA; 3.00A {Enterobacteria phage PHIX174} SCOP:
b.121.5.1 PDB: 1al0_F* 1cd3_F 1m06_F* 1m0f_F 1rb8_F*
Length = 426
Score = 29.8 bits (66), Expect = 4.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 885 LFTFALPHFIVYDIVWNRYLKLRMNKSPSHTA 916
+FTF +PH VY W +++K +N +P T
Sbjct: 66 IFTFYVPHRHVYGEQWIKFMKDGVNATPLPTV 97
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton
pumping; HET: DMU; 2.35A {Vigna radiata}
Length = 766
Score = 29.8 bits (67), Expect = 4.8
Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 14/122 (11%)
Query: 412 LATM---WIYVLKTTICIITFAFAIMIPNLELFISLIGSLCLPFMAIG------LPALLR 462
A + I + + +++ ++ + + L+ +L PAL +
Sbjct: 304 CAALVVASISSFGLNHELTAMLYPLIVSSVGILVCLLTTLFATDFFEIKAVKEIEPALKK 363
Query: 463 STAVQPCLDIPLGYSETLFHMLKASLGTGILAIPHAFKNSGY----LVGIIGTIVIGLFS 518
+ L + F L S + K+ VG+ ++IG +
Sbjct: 364 QLVISTVLMTIGVAVVS-FVALPTSFTIFNFGVQKDVKSWQLFLCVAVGLWAGLIIGFVT 422
Query: 519 CY 520
Y
Sbjct: 423 EY 424
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 29.5 bits (66), Expect = 5.5
Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 12/94 (12%)
Query: 36 YYVLIIFLPLLLLCWVRNLKFLAPFSA----FASGVTIVSFGITLYYVFTDIPSLKDRTV 91
+Y++ +P +L+ + L F P A S +++ + L + +P
Sbjct: 210 FYIVYTIVPCILISILAILVFYLPPDAGEKMSLSISALLALTVFLLLLADKVPETSLSV- 268
Query: 92 VAELKELPLFFGTVMFSMSAIGIVILCAVMVPNL 125
P+ +MF M + ++ +V+V NL
Sbjct: 269 -------PIIISYLMFIMILVAFSVILSVVVLNL 295
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 369
Score = 29.1 bits (65), Expect = 8.2
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 12/94 (12%)
Query: 36 YYVLIIFLPLLLLCWVRNLKFLAPFSA----FASGVTIVSFGITLYYVFTDIPSLKDRTV 91
+YV+ P +L+ ++ L F P + + +++ + L +P
Sbjct: 212 FYVINFITPCVLISFLAALAFYLPAESGEKMSTAICVLLAQAVFLLLTSQRLPETALAV- 270
Query: 92 VAELKELPLFFGTVMFSMSAIGIVILCAVMVPNL 125
PL +MF MS + V++ +V N
Sbjct: 271 -------PLIGKYLMFIMSLVTGVVVNCGIVLNF 297
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 28.8 bits (65), Expect = 8.7
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 556 PSVRWLAPYGRIVSFGFL 573
+R LA G +V++G +
Sbjct: 255 ELLRQLARGGTMVTYGGM 272
>3b5q_A Putative sulfatase YIDJ; NP_810509.1, structural genomics, joint
center for structural genomics, JCSG; HET: EPE; 2.40A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 482
Score = 28.8 bits (65), Expect = 9.1
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 603 WDALSHMIKGALGTGILTMPHAFKDSGYLLGFLG 636
S + L + T+ F +SGY G
Sbjct: 84 RSNSSEPVNTRLPENVPTLGSLFSESGYEAVHFG 117
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.144 0.444
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,440,734
Number of extensions: 899269
Number of successful extensions: 1792
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1786
Number of HSP's successfully gapped: 53
Length of query: 929
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 827
Effective length of database: 3,853,851
Effective search space: 3187134777
Effective search space used: 3187134777
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 62 (28.1 bits)