BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4525
(388 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CJC|A Chain A, Structure Of Adrenodoxin Reductase Of Mitochondrial P450
Systems
pdb|1E1L|A Chain A, Structure Of Adrenodoxin Reductase In Complex With Nadp
Obtained By Cocrystallisation
pdb|1E1K|A Chain A, Adrenodoxin Reductase In Complex With Nadp+ Obtained By A
Soaking Experiment
pdb|1E1M|A Chain A, Adrenodoxin Reductase In Complex With Nadph Obtained By A
Soaking Experiment
pdb|1E1N|A Chain A, Structure Of Adrenodoxin Reductase At 2.4 Angstrom In
Crystal Form A''
pdb|1E6E|A Chain A, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
pdb|1E6E|C Chain C, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
Length = 460
Score = 335 bits (860), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 177/361 (49%), Positives = 232/361 (64%), Gaps = 20/361 (5%)
Query: 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFT 73
P +C+VGSGPAGFY AQ +LK ++ VDIYEK VPFGLVR+GVAPDHPEVKNVINTFT
Sbjct: 7 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFT 66
Query: 74 KTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSF 133
+T + R FYGN+ +G+D+++ +L +AYHAVVL+YGA++ + L+IPGE+ + SAR+F
Sbjct: 67 QTARSDRCAFYGNVEVGRDVTVQELQDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAF 126
Query: 134 VGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLST 193
VGWYNGLPE+ L L C+ A ILGQGNVA+DVARILL+P D L+ TDITE +L L
Sbjct: 127 VGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQ 186
Query: 194 SRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLT 253
SR+K+V +VGRRG LQVAFTIKE REM +LP + + G+ + ARPRKRL
Sbjct: 187 SRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLM 246
Query: 254 ELILKTSNPDESKSNCSKYFRPI------FLRSPTEFKLNDNG-AITGINFA-------- 298
EL+L+T+ ++ F RSP + + +G GI A
Sbjct: 247 ELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIG 306
Query: 299 -NQQALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTVIPKEG----VPVVTWEG 353
+A+ T D E +P G+ SIGY+SR +D +PF+ K V EG VP + G
Sbjct: 307 EATRAVPTGDVEDLPCGLVLSSIGYKSRPIDPSVPFDPKLGVVPNMEGRVVDVPGLYCSG 366
Query: 354 W 354
W
Sbjct: 367 W 367
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 345 GVPVVTWEGWKAIDKEETERGKLKGKPREKIISIEEMISVSGN 387
GV V++ W+ +D EE RG+ GKPREK++ +EM+ + G+
Sbjct: 418 GVWPVSFSDWEKLDAEEVSRGQASGKPREKLLDPQEMLRLLGH 460
>pdb|1LQT|A Chain A, A Covalent Modification Of Nadp+ Revealed By The Atomic
Resolution Structure Of Fpra, A Mycobacterium
Tuberculosis Oxidoreductase
pdb|1LQT|B Chain B, A Covalent Modification Of Nadp+ Revealed By The Atomic
Resolution Structure Of Fpra, A Mycobacterium
Tuberculosis Oxidoreductase
pdb|1LQU|A Chain A, Mycobacterium Tuberculosis Fpra In Complex With Nadph
pdb|1LQU|B Chain B, Mycobacterium Tuberculosis Fpra In Complex With Nadph
Length = 456
Score = 223 bits (568), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 129/340 (37%), Positives = 189/340 (55%), Gaps = 19/340 (5%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQS-----TVDIYEKLPVPFGLVRYGVAPDHPEVKNVIN 70
+ IVGSGP+ F+ A +LK + VD+ E LP P+GLVR GVAPDHP++K++
Sbjct: 6 IAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISK 65
Query: 71 TFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISA 130
F KT ++PR F+GN+ +G+ + G+L+ Y AV+ GA +D+ LNIPGED I+A
Sbjct: 66 QFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGSIAA 125
Query: 131 RSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEK 190
FVGWYN P + L A ++G GNVA+DVARILL+ D L TDI +H+LE
Sbjct: 126 VDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALES 185
Query: 191 LSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGV-HEASATLARPR 249
L I+ V +VGRRG LQ AFT E RE+ L V V +L G+ E +A + +
Sbjct: 186 LRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVC 245
Query: 250 KRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFK---------LNDNGAITGINFANQ 300
K+ +++ ++ + + FR FL SP E K L N ++
Sbjct: 246 KQNIKVLRGYADREPRPGHRRMVFR--FLTSPIEIKGKRKVERIVLGRNELVSD-GSGRV 302
Query: 301 QALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTV 340
A T + E +P+ + RS+GY+ +PF+++S T+
Sbjct: 303 AAKDTGEREELPAQLVVRSVGYRG-VPTPGLPFDDQSGTI 341
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 348 VVTWEGWKAIDKEETERGKLKGKPREKIISIEEMISVS 385
+VT W+ ID E G+ G+PR K+ S+ E++ +
Sbjct: 417 LVTSAHWQVIDAFERAAGEPHGRPRVKLASLAELLRIG 454
>pdb|2C7G|A Chain A, Fpra From Mycobacterium Tuberculosis: His57gln Mutant
Length = 456
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 128/340 (37%), Positives = 188/340 (55%), Gaps = 19/340 (5%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQS-----TVDIYEKLPVPFGLVRYGVAPDHPEVKNVIN 70
+ IVGSGP+ F+ A +LK + VD+ E LP P+GLVR GVAPD P++K++
Sbjct: 6 IAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDQPKIKSISK 65
Query: 71 TFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISA 130
F KT ++PR F+GN+ +G+ + G+L+ Y AV+ GA +D+ LNIPGED I+A
Sbjct: 66 QFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGSIAA 125
Query: 131 RSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEK 190
FVGWYN P + L A ++G GNVA+DVARILL+ D L TDI +H+LE
Sbjct: 126 VDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALES 185
Query: 191 LSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGV-HEASATLARPR 249
L I+ V +VGRRG LQ AFT E RE+ L V V +L G+ E +A + +
Sbjct: 186 LRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVC 245
Query: 250 KRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFK---------LNDNGAITGINFANQ 300
K+ +++ ++ + + FR FL SP E K L N ++
Sbjct: 246 KQNIKVLRGYADREPRPGHRRMVFR--FLTSPIEIKGKRKVERIVLGRNELVSD-GSGRV 302
Query: 301 QALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTV 340
A T + E +P+ + RS+GY+ +PF+++S T+
Sbjct: 303 AAKDTGEREELPAQLVVRSVGYRG-VPTPGLPFDDQSGTI 341
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 348 VVTWEGWKAIDKEETERGKLKGKPREKIISIEEMISVS 385
+VT W+ ID E G+ G+PR K+ S+ E++ +
Sbjct: 417 LVTSAHWQVIDAFERAAGEPHGRPRVKLASLAELLRIG 454
>pdb|2VDC|G Chain G, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|H Chain H, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|I Chain I, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|J Chain J, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|K Chain K, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|L Chain L, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications
Length = 456
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 11/140 (7%)
Query: 41 VDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQDISLGDLTN 100
V +Y++ GL+ YG+ P K+V+ K + V ++ N +G+D SL +L
Sbjct: 148 VHVYDRYDRMGGLLVYGI-PGFKLEKSVVERRVKLLADAGVIYHPNFEVGRDASLPELRR 206
Query: 101 AYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLP--------EDASLDLSLDC 152
+ AV++ G + + PG NI++A ++ N + E+ SL+ +
Sbjct: 207 KHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAA--G 264
Query: 153 EEATILGQGNVAMDVARILL 172
+ +LG G+ AMD R +
Sbjct: 265 KHVVVLGGGDTAMDCVRTAI 284
>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus
Pfu-1140779- 001
Length = 367
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51
V IVG+GP GF A+Q+ + + +D K PVP+
Sbjct: 11 VVIVGNGPGGFELAKQLSQTYEVTVID---KEPVPY 43
>pdb|3C4A|A Chain A, Crystal Structure Of Viod Hydroxylase In Complex With
Fad From Chromobacterium Violaceum. Northeast
Structural Genomics Consortium Target Cvr158
Length = 381
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEK 46
+ ++G+GPAG A Q+ + P +DI EK
Sbjct: 3 ILVIGAGPAGLVFASQLKQARPLWAIDIVEK 33
>pdb|2GQF|A Chain A, Crystal Structure Of Flavoprotein Hi0933 From
Haemophilus Influenzae Rd
Length = 401
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 10 SQLKPNVCIVGSGPAGFYCAQQILKLLPQSTV 41
SQ N+ I+G+G AG +CA Q+ KL TV
Sbjct: 2 SQYSENI-IIGAGAAGLFCAAQLAKLGKSVTV 32
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 32/194 (16%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEK------LPVPFGLVRYGVAPDHPEVKNVI 69
V ++GS G+ +++L L P + + YEK L L G +VK+V
Sbjct: 3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEG------KVKDVN 56
Query: 70 NTFTKTGDNPR---VNFYGNICLG------QDISLGDLTNA------YHAVVLTYGADND 114
+ TG+ VN + N + +++ DL + Y ++++ GA
Sbjct: 57 SVRYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGA-VP 115
Query: 115 KKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSP 174
+L+IPG+D NI R W L + + + ++G G + ++ A
Sbjct: 116 FELDIPGKDLDNIYLMRG-RQWAIKLKQKT---VDPEVNNVVVIGSGYIGIEAAEAFAKA 171
Query: 175 VDQLKSTDITEHSL 188
++ DI + L
Sbjct: 172 GKKVTVIDILDRPL 185
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 32/194 (16%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEK------LPVPFGLVRYGVAPDHPEVKNVI 69
V ++GS G+ +++L L P + + YEK L L G +VK+V
Sbjct: 3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSXGMQLYLEG------KVKDVN 56
Query: 70 NTFTKTGDNPR---VNFYGNICLG------QDISLGDLTNA------YHAVVLTYGADND 114
+ TG+ VN + N + +++ DL + Y ++++ GA
Sbjct: 57 SVRYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGA-VP 115
Query: 115 KKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSP 174
+L+IPG+D NI R W L + + + ++G G + ++ A
Sbjct: 116 FELDIPGKDLDNIYLMRG-RQWAIKLKQKT---VDPEVNNVVVIGSGYIGIEAAEAFAKA 171
Query: 175 VDQLKSTDITEHSL 188
++ DI + L
Sbjct: 172 GKKVTVIDILDRPL 185
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 32/194 (16%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEK------LPVPFGLVRYGVAPDHPEVKNVI 69
V ++GS G+ +++L L P + + YEK L L G +VK+V
Sbjct: 3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSXGMQLYLEG------KVKDVN 56
Query: 70 NTFTKTGDNPR---VNFYGNICLG------QDISLGDLTNA------YHAVVLTYGADND 114
+ TG+ VN + N + +++ DL + Y ++++ GA
Sbjct: 57 SVRYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGA-VP 115
Query: 115 KKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSP 174
+L+IPG+D NI R W L + + + ++G G + ++ A
Sbjct: 116 FELDIPGKDLDNIYLMRG-RQWAIKLKQKT---VDPEVNNVVVIGSGYIGIEAAEAFAKA 171
Query: 175 VDQLKSTDITEHSL 188
++ DI + L
Sbjct: 172 GKKVTVIDILDRPL 185
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 20/188 (10%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKT 75
V ++GS G+ +++L L P + + YEK L +VK+V + T
Sbjct: 3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLCXGMQLYLEGKVKDVNSVRYMT 62
Query: 76 GDNPR---VNFYGNICLG------QDISLGDLTNA------YHAVVLTYGADNDKKLNIP 120
G+ VN + N + +++ DL + Y ++++ GA +L+IP
Sbjct: 63 GEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGA-VPFELDIP 121
Query: 121 GEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKS 180
G+D NI R W L + + + ++G G + ++ A ++
Sbjct: 122 GKDLDNIYLMRG-RQWAIKLKQKT---VDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTV 177
Query: 181 TDITEHSL 188
DI + L
Sbjct: 178 IDILDRPL 185
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 32/194 (16%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEK------LPVPFGLVRYGVAPDHPEVKNVI 69
V ++GS G+ +++L L P + + YEK L L G +VK+V
Sbjct: 3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSSGMQLYLEG------KVKDVN 56
Query: 70 NTFTKTGDNPR---VNFYGNICLG------QDISLGDLTNA------YHAVVLTYGADND 114
+ TG+ VN + N + +++ DL + Y ++++ GA
Sbjct: 57 SVRYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGA-VP 115
Query: 115 KKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSP 174
+L+IPG+D NI R W L + + + ++G G + ++ A
Sbjct: 116 FELDIPGKDLDNIYLMRG-RQWAIKLKQKT---VDPEVNNVVVIGSGYIGIEAAEAFAKA 171
Query: 175 VDQLKSTDITEHSL 188
++ DI + L
Sbjct: 172 GKKVTVIDILDRPL 185
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 80/192 (41%), Gaps = 28/192 (14%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP-VPF---GLVRYGVAPDHPEVKNVINT 71
V ++GS G+ +++L L P + + YEK + F G+ Y +VK+V +
Sbjct: 3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFCSCGMQLYL----EGKVKDVNSV 58
Query: 72 FTKTGDNPR---VNFYGNICLG------QDISLGDLTNA------YHAVVLTYGADNDKK 116
TG+ VN + N + +++ DL + Y ++++ GA +
Sbjct: 59 RYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGA-VPFE 117
Query: 117 LNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVD 176
L+IPG+D NI R W L + + + ++G G + ++ A
Sbjct: 118 LDIPGKDLDNIYLMRG-RQWAIKLKQKT---VDPEVNNVVVIGSGYIGIEAAEAFAKAGK 173
Query: 177 QLKSTDITEHSL 188
++ DI + L
Sbjct: 174 KVTVIDILDRPL 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,544,721
Number of Sequences: 62578
Number of extensions: 494794
Number of successful extensions: 1244
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1221
Number of HSP's gapped (non-prelim): 24
length of query: 388
length of database: 14,973,337
effective HSP length: 101
effective length of query: 287
effective length of database: 8,652,959
effective search space: 2483399233
effective search space used: 2483399233
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)