Query psy4525
Match_columns 388
No_of_seqs 282 out of 2615
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 19:24:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4525.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4525hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1800|consensus 100.0 1.9E-56 4.2E-61 404.2 24.9 375 11-386 18-467 (468)
2 PTZ00188 adrenodoxin reductase 100.0 5E-54 1.1E-58 412.7 34.0 370 11-387 37-500 (506)
3 PLN02852 ferredoxin-NADP+ redu 100.0 1.2E-53 2.6E-58 417.3 33.3 376 11-387 24-490 (491)
4 PRK12779 putative bifunctional 100.0 3.6E-32 7.9E-37 285.8 23.8 261 11-343 304-585 (944)
5 PRK12831 putative oxidoreducta 100.0 1E-31 2.2E-36 265.1 23.0 262 11-344 138-420 (464)
6 TIGR01316 gltA glutamate synth 100.0 2.3E-31 5.1E-36 262.0 23.1 276 11-359 131-424 (449)
7 PRK12778 putative bifunctional 100.0 6.4E-31 1.4E-35 274.2 24.1 277 11-359 429-724 (752)
8 PRK12775 putative trifunctiona 100.0 9.7E-31 2.1E-35 277.3 23.2 261 12-343 429-709 (1006)
9 COG0493 GltD NADPH-dependent g 100.0 6.2E-31 1.3E-35 255.1 13.8 309 11-385 121-455 (457)
10 PRK12769 putative oxidoreducta 100.0 2.2E-29 4.7E-34 258.9 26.0 261 11-342 325-606 (654)
11 PRK11749 dihydropyrimidine deh 100.0 1.6E-29 3.5E-34 250.1 23.4 258 11-343 138-410 (457)
12 TIGR01318 gltD_gamma_fam gluta 100.0 6.8E-29 1.5E-33 245.4 25.3 261 11-342 139-420 (467)
13 PRK12814 putative NADPH-depend 100.0 6.2E-29 1.3E-33 254.7 23.1 256 11-343 191-459 (652)
14 PRK12809 putative oxidoreducta 100.0 1.2E-28 2.6E-33 252.4 24.6 260 12-342 309-589 (639)
15 PRK09853 putative selenate red 100.0 8.1E-29 1.7E-33 257.0 22.9 253 11-343 537-801 (1019)
16 PRK12810 gltD glutamate syntha 100.0 2.4E-28 5.1E-33 242.3 21.8 286 11-359 141-439 (471)
17 PRK12770 putative glutamate sy 100.0 5.1E-27 1.1E-31 224.8 23.9 278 8-359 13-324 (352)
18 TIGR03315 Se_ygfK putative sel 100.0 8.2E-27 1.8E-31 243.3 23.3 251 12-343 536-798 (1012)
19 PRK06370 mercuric reductase; V 100.0 1.7E-26 3.8E-31 229.0 24.2 246 12-345 4-297 (463)
20 COG1249 Lpd Pyruvate/2-oxoglut 100.0 1.4E-26 3E-31 224.7 22.4 249 11-350 2-295 (454)
21 TIGR01317 GOGAT_sm_gam glutama 100.0 1.6E-26 3.5E-31 229.5 23.4 275 12-342 142-436 (485)
22 TIGR01421 gluta_reduc_1 glutat 99.9 4.4E-26 9.6E-31 224.8 23.4 242 13-345 2-291 (450)
23 PRK06567 putative bifunctional 99.9 2.7E-26 5.9E-31 235.3 22.0 265 11-328 381-732 (1028)
24 PRK07251 pyridine nucleotide-d 99.9 9.7E-26 2.1E-30 222.2 22.5 242 13-345 3-279 (438)
25 PRK13984 putative oxidoreducta 99.9 5.3E-26 1.1E-30 232.4 20.9 266 11-345 281-564 (604)
26 PRK06467 dihydrolipoamide dehy 99.9 2E-25 4.3E-30 221.4 24.0 260 12-359 3-313 (471)
27 TIGR01424 gluta_reduc_2 glutat 99.9 1E-25 2.2E-30 222.3 21.8 241 13-346 2-290 (446)
28 TIGR02053 MerA mercuric reduct 99.9 1.3E-25 2.9E-30 222.8 22.5 243 14-344 1-291 (463)
29 PRK06116 glutathione reductase 99.9 1.2E-25 2.7E-30 222.2 21.5 242 12-345 3-291 (450)
30 PRK12771 putative glutamate sy 99.9 3.1E-25 6.8E-30 224.7 23.1 254 11-343 135-402 (564)
31 PRK05249 soluble pyridine nucl 99.9 2.4E-25 5.2E-30 220.9 21.7 244 12-345 4-298 (461)
32 COG0492 TrxB Thioredoxin reduc 99.9 1E-24 2.2E-29 202.1 23.1 242 12-344 2-260 (305)
33 TIGR01292 TRX_reduct thioredox 99.9 1.5E-24 3.3E-29 203.0 24.6 254 14-360 1-275 (300)
34 PRK08010 pyridine nucleotide-d 99.9 4.4E-25 9.5E-30 217.8 21.6 255 13-359 3-293 (441)
35 PLN02507 glutathione reductase 99.9 5.7E-25 1.2E-29 219.1 22.6 243 12-346 24-327 (499)
36 PLN02546 glutathione reductase 99.9 4.5E-25 9.7E-30 221.1 21.8 255 13-359 79-389 (558)
37 PTZ00058 glutathione reductase 99.9 9.2E-25 2E-29 218.8 23.2 257 12-361 47-376 (561)
38 PRK10262 thioredoxin reductase 99.9 2.8E-24 6E-29 203.4 24.2 262 11-360 4-289 (321)
39 PRK14989 nitrite reductase sub 99.9 4.3E-25 9.3E-30 230.5 20.3 267 13-360 3-283 (847)
40 PRK06416 dihydrolipoamide dehy 99.9 1.8E-24 3.8E-29 214.8 23.3 243 12-345 3-297 (462)
41 PLN02172 flavin-containing mon 99.9 9.7E-25 2.1E-29 214.5 21.2 163 11-207 8-238 (461)
42 PRK06115 dihydrolipoamide dehy 99.9 3.7E-24 8E-29 212.2 25.0 245 13-345 3-301 (466)
43 TIGR01423 trypano_reduc trypan 99.9 1.7E-24 3.7E-29 214.5 21.6 259 12-359 2-327 (486)
44 PF00743 FMO-like: Flavin-bind 99.9 8.3E-25 1.8E-29 217.7 18.1 164 14-211 2-221 (531)
45 PRK07845 flavoprotein disulfid 99.9 5.8E-24 1.3E-28 210.8 24.0 241 14-345 2-300 (466)
46 COG1252 Ndh NADH dehydrogenase 99.9 8.7E-25 1.9E-29 207.1 15.9 264 12-343 2-284 (405)
47 PRK05976 dihydrolipoamide dehy 99.9 1E-23 2.2E-28 209.7 24.1 230 11-327 2-284 (472)
48 PRK04965 NADH:flavorubredoxin 99.9 4E-24 8.7E-29 206.7 20.4 246 14-345 3-261 (377)
49 TIGR03140 AhpF alkyl hydropero 99.9 1.6E-23 3.6E-28 209.9 25.3 259 11-361 210-488 (515)
50 PRK15317 alkyl hydroperoxide r 99.9 2.5E-23 5.3E-28 208.8 25.8 258 11-360 209-486 (517)
51 PRK07846 mycothione reductase; 99.9 7.1E-24 1.5E-28 209.1 21.6 250 14-358 2-300 (451)
52 TIGR02374 nitri_red_nirB nitri 99.9 3.1E-24 6.6E-29 224.2 19.0 246 16-345 1-260 (785)
53 PRK13748 putative mercuric red 99.9 8.9E-24 1.9E-28 214.7 21.9 254 12-359 97-404 (561)
54 PRK09564 coenzyme A disulfide 99.9 6E-24 1.3E-28 210.0 18.5 264 14-360 1-284 (444)
55 TIGR03143 AhpF_homolog putativ 99.9 4.9E-23 1.1E-27 207.9 25.1 243 12-345 3-269 (555)
56 PRK09754 phenylpropionate diox 99.9 7.4E-24 1.6E-28 206.1 17.9 250 13-345 3-263 (396)
57 PRK06912 acoL dihydrolipoamide 99.9 3.2E-23 6.9E-28 205.3 22.4 240 15-345 2-293 (458)
58 PRK06292 dihydrolipoamide dehy 99.9 4.9E-23 1.1E-27 204.4 23.7 243 12-345 2-294 (460)
59 PRK14727 putative mercuric red 99.9 2.6E-23 5.7E-28 206.8 21.7 243 11-345 14-309 (479)
60 PRK06327 dihydrolipoamide dehy 99.9 3.8E-23 8.2E-28 205.6 22.6 247 13-345 4-310 (475)
61 TIGR01350 lipoamide_DH dihydro 99.9 3.8E-23 8.2E-28 205.3 22.4 242 14-344 2-294 (461)
62 PRK07818 dihydrolipoamide dehy 99.9 5.2E-23 1.1E-27 204.3 23.0 244 13-345 4-299 (466)
63 TIGR01438 TGR thioredoxin and 99.9 1.1E-22 2.3E-27 202.1 23.6 244 13-345 2-306 (484)
64 KOG0404|consensus 99.9 7.4E-23 1.6E-27 173.8 18.3 241 14-341 9-273 (322)
65 KOG0399|consensus 99.9 1.3E-23 2.9E-28 210.9 15.8 156 11-169 1783-1941(2142)
66 PTZ00318 NADH dehydrogenase-li 99.9 1.6E-23 3.5E-28 205.3 15.8 265 11-344 8-302 (424)
67 PRK14694 putative mercuric red 99.9 1.7E-22 3.6E-27 200.7 22.7 240 12-345 5-298 (468)
68 PRK13512 coenzyme A disulfide 99.9 2.1E-23 4.5E-28 205.4 15.9 243 14-345 2-265 (438)
69 PTZ00052 thioredoxin reductase 99.9 2.1E-22 4.7E-27 200.8 23.0 239 13-342 5-301 (499)
70 TIGR03169 Nterm_to_SelD pyridi 99.9 6.7E-23 1.5E-27 197.4 16.8 251 15-344 1-265 (364)
71 PTZ00153 lipoamide dehydrogena 99.9 7.5E-22 1.6E-26 200.4 24.6 253 13-345 116-452 (659)
72 TIGR03452 mycothione_red mycot 99.9 5E-22 1.1E-26 196.1 21.0 239 13-345 2-291 (452)
73 KOG1336|consensus 99.9 9E-22 1.9E-26 185.4 20.1 250 12-344 73-335 (478)
74 KOG1335|consensus 99.9 2.4E-21 5.1E-26 176.7 21.5 250 12-350 38-337 (506)
75 TIGR01372 soxA sarcosine oxida 99.9 4.8E-21 1E-25 204.7 24.4 227 13-327 163-414 (985)
76 COG3634 AhpF Alkyl hydroperoxi 99.9 1.1E-21 2.3E-26 176.8 14.9 259 11-359 209-488 (520)
77 KOG0405|consensus 99.9 3.5E-21 7.5E-26 173.6 17.8 244 12-349 19-309 (478)
78 COG1251 NirB NAD(P)H-nitrite r 99.8 1E-20 2.2E-25 186.1 14.5 267 13-363 3-282 (793)
79 PF13738 Pyr_redox_3: Pyridine 99.8 1.6E-20 3.4E-25 165.8 13.8 157 17-208 1-202 (203)
80 KOG1399|consensus 99.8 4.1E-20 8.8E-25 178.9 17.7 148 12-172 5-206 (448)
81 COG2072 TrkA Predicted flavopr 99.8 3E-19 6.5E-24 175.0 21.4 167 11-211 6-213 (443)
82 PF13434 K_oxygenase: L-lysine 99.8 6.1E-20 1.3E-24 173.8 11.5 262 14-323 3-340 (341)
83 COG3486 IucD Lysine/ornithine 99.8 3E-18 6.6E-23 158.6 19.8 326 11-384 3-427 (436)
84 KOG4716|consensus 99.8 2.7E-18 5.9E-23 154.4 16.3 232 11-328 17-304 (503)
85 TIGR03385 CoA_CoA_reduc CoA-di 99.8 7.1E-18 1.5E-22 165.9 15.8 235 27-344 1-256 (427)
86 KOG2495|consensus 99.7 5E-17 1.1E-21 151.0 15.0 268 11-343 53-352 (491)
87 COG0446 HcaD Uncharacterized N 99.6 1.5E-14 3.3E-19 141.2 15.0 267 16-364 1-281 (415)
88 KOG1346|consensus 99.4 3.4E-13 7.5E-18 124.8 8.0 287 13-378 178-504 (659)
89 PRK09897 hypothetical protein; 99.2 5.2E-10 1.1E-14 111.7 17.8 39 14-52 2-40 (534)
90 COG1148 HdrA Heterodisulfide r 99.1 7.3E-09 1.6E-13 98.4 20.0 40 13-54 124-163 (622)
91 COG4529 Uncharacterized protei 99.1 7.8E-09 1.7E-13 99.1 20.4 45 13-57 1-46 (474)
92 KOG2755|consensus 99.1 1.2E-10 2.6E-15 102.1 7.1 162 15-221 1-180 (334)
93 PF07992 Pyr_redox_2: Pyridine 99.1 2.1E-11 4.5E-16 107.2 0.3 128 15-159 1-159 (201)
94 COG2081 Predicted flavoprotein 99.0 2.7E-09 5.8E-14 99.9 12.1 100 12-113 2-167 (408)
95 PF03486 HI0933_like: HI0933-l 98.9 2.6E-09 5.6E-14 103.5 8.6 98 14-113 1-166 (409)
96 PF00070 Pyr_redox: Pyridine n 98.9 1.3E-08 2.8E-13 75.6 8.9 79 154-299 1-79 (80)
97 PRK04176 ribulose-1,5-biphosph 98.7 9.3E-08 2E-12 87.3 10.8 99 12-113 24-173 (257)
98 PRK05329 anaerobic glycerol-3- 98.6 3.4E-07 7.4E-12 89.2 12.2 34 13-48 2-35 (422)
99 COG0644 FixC Dehydrogenases (f 98.6 1.7E-07 3.7E-12 91.3 9.6 100 12-113 2-152 (396)
100 TIGR00292 thiazole biosynthesi 98.6 4.2E-07 9.2E-12 82.7 10.7 75 12-89 20-123 (254)
101 TIGR02032 GG-red-SF geranylger 98.5 5E-07 1.1E-11 84.0 9.2 98 14-113 1-148 (295)
102 PF13450 NAD_binding_8: NAD(P) 98.5 1.8E-07 3.9E-12 66.9 4.6 36 18-55 1-36 (68)
103 PRK10157 putative oxidoreducta 98.5 9.4E-07 2E-11 87.0 11.3 37 13-51 5-41 (428)
104 PF00070 Pyr_redox: Pyridine n 98.5 1.2E-06 2.6E-11 64.9 9.0 65 15-91 1-65 (80)
105 PRK06847 hypothetical protein; 98.5 1.2E-06 2.6E-11 84.7 11.4 36 12-49 3-38 (375)
106 PF01946 Thi4: Thi4 family; PD 98.4 1E-06 2.2E-11 76.3 9.0 41 12-54 16-56 (230)
107 COG1249 Lpd Pyruvate/2-oxoglut 98.4 1.7E-06 3.7E-11 84.8 11.4 91 11-113 171-272 (454)
108 TIGR01790 carotene-cycl lycope 98.4 1.5E-06 3.2E-11 84.5 10.9 97 15-113 1-141 (388)
109 PRK10015 oxidoreductase; Provi 98.4 1.5E-06 3.2E-11 85.6 10.7 37 13-51 5-41 (429)
110 COG1635 THI4 Ribulose 1,5-bisp 98.4 1.3E-06 2.9E-11 75.4 8.8 40 13-54 30-70 (262)
111 PRK12842 putative succinate de 98.4 7.6E-07 1.6E-11 90.9 8.3 40 13-54 9-48 (574)
112 PLN02463 lycopene beta cyclase 98.4 3E-06 6.4E-11 83.5 11.6 100 12-113 27-169 (447)
113 TIGR00275 flavoprotein, HI0933 98.4 2.5E-06 5.5E-11 83.2 10.7 35 17-53 1-35 (400)
114 PLN02661 Putative thiazole syn 98.3 3.6E-06 7.8E-11 79.2 10.4 39 13-52 92-130 (357)
115 TIGR02028 ChlP geranylgeranyl 98.3 4.8E-06 1E-10 81.2 10.8 34 14-49 1-34 (398)
116 PRK07251 pyridine nucleotide-d 98.3 5.8E-06 1.3E-10 81.8 11.1 91 12-114 156-254 (438)
117 PRK06834 hypothetical protein; 98.2 1.2E-05 2.7E-10 80.4 12.5 36 12-49 2-37 (488)
118 PRK07843 3-ketosteroid-delta-1 98.2 4.4E-06 9.5E-11 85.0 9.1 40 13-54 7-46 (557)
119 PF12831 FAD_oxidored: FAD dep 98.2 1.5E-06 3.3E-11 85.5 5.3 40 15-56 1-40 (428)
120 PRK08773 2-octaprenyl-3-methyl 98.2 9.3E-06 2E-10 79.1 10.7 37 11-49 4-40 (392)
121 PLN00093 geranylgeranyl diphos 98.2 1.3E-05 2.9E-10 79.2 11.6 36 11-48 37-72 (450)
122 TIGR02023 BchP-ChlP geranylger 98.2 1.4E-05 2.9E-10 77.8 11.5 32 14-47 1-32 (388)
123 TIGR03378 glycerol3P_GlpB glyc 98.2 0.00011 2.3E-09 71.3 16.8 33 14-48 1-33 (419)
124 KOG0029|consensus 98.2 3.2E-06 6.9E-11 84.0 6.5 44 11-56 13-56 (501)
125 PRK06184 hypothetical protein; 98.2 1.3E-05 2.8E-10 80.8 10.8 36 13-50 3-38 (502)
126 PF01266 DAO: FAD dependent ox 98.1 1.3E-05 2.8E-10 76.4 9.9 32 15-48 1-32 (358)
127 PRK06912 acoL dihydrolipoamide 98.1 1.8E-05 3.9E-10 78.7 11.0 91 12-114 169-269 (458)
128 PRK07333 2-octaprenyl-6-methox 98.1 1.2E-05 2.6E-10 78.5 9.5 35 13-49 1-37 (403)
129 PRK05976 dihydrolipoamide dehy 98.1 1.9E-05 4E-10 78.9 11.0 90 13-114 180-282 (472)
130 PRK05714 2-octaprenyl-3-methyl 98.1 1.8E-05 3.8E-10 77.5 10.7 34 13-48 2-35 (405)
131 PRK05192 tRNA uridine 5-carbox 98.1 2.3E-05 5E-10 79.1 11.5 35 12-48 3-37 (618)
132 COG0579 Predicted dehydrogenas 98.1 3.3E-05 7.1E-10 74.8 12.1 40 12-51 2-41 (429)
133 PRK04965 NADH:flavorubredoxin 98.1 2E-05 4.4E-10 76.3 10.6 92 12-114 140-240 (377)
134 PRK06416 dihydrolipoamide dehy 98.1 2.3E-05 4.9E-10 78.1 11.2 91 12-114 171-273 (462)
135 TIGR01350 lipoamide_DH dihydro 98.1 1.9E-05 4.2E-10 78.6 10.7 91 12-114 169-270 (461)
136 PLN02697 lycopene epsilon cycl 98.1 2.9E-05 6.3E-10 77.9 11.9 100 12-113 107-248 (529)
137 PRK09754 phenylpropionate diox 98.1 1.9E-05 4.1E-10 77.1 10.1 92 12-114 143-242 (396)
138 PRK11445 putative oxidoreducta 98.1 1.6E-05 3.6E-10 76.2 9.5 33 14-49 2-34 (351)
139 PRK13512 coenzyme A disulfide 98.1 2.1E-05 4.6E-10 77.7 10.4 90 13-114 148-242 (438)
140 PRK07236 hypothetical protein; 98.1 4E-05 8.7E-10 74.5 11.8 37 11-49 4-40 (386)
141 PRK07494 2-octaprenyl-6-methox 98.1 2.7E-05 5.9E-10 75.6 10.6 36 12-49 6-41 (388)
142 PRK09564 coenzyme A disulfide 98.1 2.8E-05 6.1E-10 77.0 10.8 91 13-114 149-247 (444)
143 PF01134 GIDA: Glucose inhibit 98.0 1.6E-05 3.4E-10 76.1 8.3 28 15-44 1-28 (392)
144 TIGR03385 CoA_CoA_reduc CoA-di 98.0 3.1E-05 6.6E-10 76.4 10.6 92 12-114 136-234 (427)
145 PRK07208 hypothetical protein; 98.0 7.9E-06 1.7E-10 81.8 6.1 43 11-55 2-44 (479)
146 TIGR01421 gluta_reduc_1 glutat 98.0 4.3E-05 9.4E-10 75.8 11.2 90 13-114 166-266 (450)
147 PRK08010 pyridine nucleotide-d 98.0 4.5E-05 9.7E-10 75.5 11.3 91 12-114 157-255 (441)
148 COG1233 Phytoene dehydrogenase 98.0 7E-06 1.5E-10 82.1 5.6 42 12-55 2-43 (487)
149 PRK07190 hypothetical protein; 98.0 3.4E-05 7.3E-10 77.2 10.4 37 12-50 4-40 (487)
150 TIGR01424 gluta_reduc_2 glutat 98.0 4.3E-05 9.3E-10 75.8 11.1 91 12-114 165-264 (446)
151 COG3380 Predicted NAD/FAD-depe 98.0 1.3E-05 2.8E-10 71.5 6.3 39 14-54 2-40 (331)
152 PRK05249 soluble pyridine nucl 98.0 4.4E-05 9.6E-10 76.0 11.1 91 12-114 174-273 (461)
153 TIGR02053 MerA mercuric reduct 98.0 4.3E-05 9.3E-10 76.1 10.9 90 13-114 166-267 (463)
154 PRK06370 mercuric reductase; V 98.0 4.3E-05 9.2E-10 76.2 10.6 91 12-114 170-272 (463)
155 PRK11728 hydroxyglutarate oxid 98.0 4.7E-05 1E-09 74.2 10.6 37 14-50 3-39 (393)
156 PF13454 NAD_binding_9: FAD-NA 98.0 4.2E-05 9.2E-10 64.3 8.9 33 17-49 1-36 (156)
157 PRK11883 protoporphyrinogen ox 98.0 8.9E-06 1.9E-10 80.6 5.5 40 14-55 1-42 (451)
158 PRK08401 L-aspartate oxidase; 98.0 6.6E-05 1.4E-09 74.8 11.5 34 14-49 2-35 (466)
159 PRK06617 2-octaprenyl-6-methox 98.0 5.1E-05 1.1E-09 73.5 10.4 32 14-47 2-33 (374)
160 PLN02507 glutathione reductase 98.0 5.7E-05 1.2E-09 75.9 11.0 90 13-114 203-301 (499)
161 PRK06116 glutathione reductase 98.0 5.9E-05 1.3E-09 74.9 11.1 91 12-114 166-266 (450)
162 PRK06327 dihydrolipoamide dehy 98.0 5.3E-05 1.2E-09 75.7 10.8 91 12-114 182-285 (475)
163 PRK07818 dihydrolipoamide dehy 98.0 5.3E-05 1.1E-09 75.6 10.6 91 12-114 171-274 (466)
164 PRK08255 salicylyl-CoA 5-hydro 97.9 1.9E-05 4.1E-10 83.4 7.7 36 14-49 1-36 (765)
165 PRK14694 putative mercuric red 97.9 6.7E-05 1.5E-09 74.8 11.2 89 13-114 178-274 (468)
166 COG1232 HemY Protoporphyrinoge 97.9 1.3E-05 2.9E-10 78.0 5.9 42 14-55 1-42 (444)
167 COG1252 Ndh NADH dehydrogenase 97.9 3.8E-05 8.3E-10 73.8 8.7 91 14-114 156-263 (405)
168 PRK06183 mhpA 3-(3-hydroxyphen 97.9 7E-05 1.5E-09 76.1 11.0 38 11-50 8-45 (538)
169 PRK07845 flavoprotein disulfid 97.9 7.8E-05 1.7E-09 74.3 11.1 90 13-114 177-275 (466)
170 KOG2415|consensus 97.9 2.1E-05 4.5E-10 74.1 6.1 43 12-54 75-121 (621)
171 PRK07846 mycothione reductase; 97.9 0.0001 2.2E-09 73.2 11.5 90 12-114 165-263 (451)
172 TIGR00562 proto_IX_ox protopor 97.9 1.5E-05 3.3E-10 79.3 5.6 43 13-55 2-46 (462)
173 PLN02576 protoporphyrinogen ox 97.9 1.7E-05 3.7E-10 79.7 6.0 43 11-55 10-53 (496)
174 PRK06115 dihydrolipoamide dehy 97.9 8.5E-05 1.9E-09 74.0 10.7 91 12-114 173-277 (466)
175 PF05834 Lycopene_cycl: Lycope 97.9 9E-05 1.9E-09 71.7 10.4 36 15-50 1-36 (374)
176 PRK13748 putative mercuric red 97.9 8.2E-05 1.8E-09 76.0 10.7 89 13-114 270-366 (561)
177 KOG1335|consensus 97.9 5.6E-05 1.2E-09 70.6 8.3 99 12-126 210-323 (506)
178 PLN02268 probable polyamine ox 97.9 1.7E-05 3.8E-10 78.3 5.4 40 14-55 1-40 (435)
179 COG3349 Uncharacterized conser 97.9 1.7E-05 3.6E-10 77.3 5.1 41 14-56 1-41 (485)
180 PRK14727 putative mercuric red 97.9 0.00011 2.3E-09 73.6 11.1 89 13-114 188-284 (479)
181 PRK07233 hypothetical protein; 97.9 1.7E-05 3.8E-10 78.0 5.3 38 15-54 1-38 (434)
182 KOG3851|consensus 97.9 0.00015 3.2E-09 66.2 10.5 39 11-49 37-75 (446)
183 PTZ00318 NADH dehydrogenase-li 97.8 9.9E-05 2.1E-09 72.7 10.2 91 14-114 174-281 (424)
184 TIGR01423 trypano_reduc trypan 97.8 0.00012 2.6E-09 73.2 10.9 93 12-114 186-289 (486)
185 COG0446 HcaD Uncharacterized N 97.8 9.4E-05 2E-09 72.1 9.7 91 13-114 136-238 (415)
186 PRK14989 nitrite reductase sub 97.8 9.6E-05 2.1E-09 78.5 10.1 92 12-114 144-246 (847)
187 TIGR03452 mycothione_red mycot 97.8 0.00017 3.8E-09 71.5 11.3 89 13-114 169-266 (452)
188 TIGR01292 TRX_reduct thioredox 97.8 7.3E-05 1.6E-09 69.7 8.1 47 270-327 69-115 (300)
189 TIGR02374 nitri_red_nirB nitri 97.8 0.0001 2.3E-09 78.0 9.9 92 12-114 139-239 (785)
190 PF01494 FAD_binding_3: FAD bi 97.8 2.2E-05 4.7E-10 74.8 4.5 35 14-50 2-36 (356)
191 TIGR01438 TGR thioredoxin and 97.8 0.00016 3.5E-09 72.3 10.7 90 12-114 179-280 (484)
192 PRK07364 2-octaprenyl-6-methox 97.8 3.2E-05 6.8E-10 75.9 5.5 38 11-50 16-53 (415)
193 TIGR02733 desat_CrtD C-3',4' d 97.8 3E-05 6.4E-10 77.9 5.4 39 14-54 2-40 (492)
194 PRK06467 dihydrolipoamide dehy 97.8 0.00018 3.9E-09 71.8 11.0 90 12-114 173-275 (471)
195 PTZ00058 glutathione reductase 97.8 0.00015 3.3E-09 73.5 10.5 89 13-113 237-336 (561)
196 TIGR00136 gidA glucose-inhibit 97.8 0.00021 4.5E-09 72.2 11.2 33 14-48 1-33 (617)
197 TIGR00031 UDP-GALP_mutase UDP- 97.8 3.5E-05 7.6E-10 74.0 5.5 40 14-55 2-41 (377)
198 PRK12416 protoporphyrinogen ox 97.8 3.3E-05 7.1E-10 77.0 5.4 42 14-55 2-47 (463)
199 PRK05945 sdhA succinate dehydr 97.8 0.0002 4.3E-09 73.3 11.1 39 13-51 3-41 (575)
200 PRK08163 salicylate hydroxylas 97.7 3.6E-05 7.8E-10 75.0 5.4 37 12-50 3-39 (396)
201 PTZ00052 thioredoxin reductase 97.7 0.00022 4.8E-09 71.7 11.0 90 12-114 181-279 (499)
202 PRK06292 dihydrolipoamide dehy 97.7 0.00022 4.7E-09 71.1 10.7 90 12-114 168-269 (460)
203 TIGR02734 crtI_fam phytoene de 97.7 3.4E-05 7.5E-10 77.7 5.0 38 16-55 1-38 (502)
204 TIGR01789 lycopene_cycl lycope 97.7 0.00025 5.4E-09 68.5 10.6 38 15-52 1-38 (370)
205 PRK07045 putative monooxygenas 97.7 3.8E-05 8.2E-10 74.7 5.0 37 12-50 4-40 (388)
206 PLN02568 polyamine oxidase 97.7 5.2E-05 1.1E-09 76.6 6.1 41 13-55 5-50 (539)
207 PTZ00153 lipoamide dehydrogena 97.7 0.00025 5.3E-09 73.2 11.0 90 13-114 312-428 (659)
208 PLN02546 glutathione reductase 97.7 0.00023 5E-09 72.2 10.7 91 12-114 251-351 (558)
209 TIGR00551 nadB L-aspartate oxi 97.7 0.00028 6E-09 70.8 10.9 35 14-51 3-37 (488)
210 TIGR02731 phytoene_desat phyto 97.7 5E-05 1.1E-09 75.4 5.3 38 15-54 1-38 (453)
211 PRK09126 hypothetical protein; 97.7 5.2E-05 1.1E-09 73.7 5.3 35 13-49 3-37 (392)
212 PRK08013 oxidoreductase; Provi 97.7 5.4E-05 1.2E-09 73.9 5.2 35 13-49 3-37 (400)
213 PRK08849 2-octaprenyl-3-methyl 97.7 5.9E-05 1.3E-09 73.3 5.3 34 13-48 3-36 (384)
214 KOG1276|consensus 97.6 7.1E-05 1.5E-09 70.9 5.4 46 11-56 9-54 (491)
215 PRK07608 ubiquinone biosynthes 97.6 6.4E-05 1.4E-09 73.0 5.3 36 13-50 5-40 (388)
216 PRK06753 hypothetical protein; 97.6 5.9E-05 1.3E-09 72.8 5.0 35 14-50 1-35 (373)
217 TIGR02730 carot_isom carotene 97.6 7.3E-05 1.6E-09 75.1 5.8 40 14-55 1-40 (493)
218 PRK13977 myosin-cross-reactive 97.6 9.1E-05 2E-09 74.1 6.2 43 12-54 21-65 (576)
219 PRK06263 sdhA succinate dehydr 97.6 0.00039 8.5E-09 70.7 11.0 34 13-49 7-40 (543)
220 TIGR01988 Ubi-OHases Ubiquinon 97.6 5.8E-05 1.2E-09 73.1 4.8 34 15-50 1-34 (385)
221 PRK10262 thioredoxin reductase 97.6 0.00048 1E-08 65.2 10.7 89 12-114 145-249 (321)
222 KOG1336|consensus 97.6 0.00034 7.4E-09 67.4 9.4 92 12-114 212-314 (478)
223 COG2081 Predicted flavoprotein 97.6 0.00086 1.9E-08 63.5 11.8 79 268-357 121-205 (408)
224 PRK05732 2-octaprenyl-6-methox 97.6 7.1E-05 1.5E-09 72.9 4.7 34 12-47 2-38 (395)
225 PLN02529 lysine-specific histo 97.6 0.00011 2.3E-09 76.4 6.0 42 11-54 158-199 (738)
226 TIGR02360 pbenz_hydroxyl 4-hyd 97.6 8.6E-05 1.9E-09 72.3 5.2 35 13-49 2-36 (390)
227 COG0654 UbiH 2-polyprenyl-6-me 97.6 8.2E-05 1.8E-09 72.3 5.0 33 13-47 2-34 (387)
228 PRK05868 hypothetical protein; 97.6 9.7E-05 2.1E-09 71.4 5.4 35 14-50 2-36 (372)
229 PLN02676 polyamine oxidase 97.6 0.00012 2.5E-09 73.4 6.0 44 11-56 24-68 (487)
230 KOG0685|consensus 97.6 0.00012 2.6E-09 70.4 5.6 42 12-54 20-61 (498)
231 TIGR01984 UbiH 2-polyprenyl-6- 97.6 8.1E-05 1.8E-09 72.1 4.6 33 15-49 1-34 (382)
232 PF13738 Pyr_redox_3: Pyridine 97.5 0.00024 5.2E-09 62.2 7.2 132 156-326 1-142 (203)
233 PRK08850 2-octaprenyl-6-methox 97.5 0.0001 2.2E-09 72.2 5.0 33 13-47 4-36 (405)
234 PRK07538 hypothetical protein; 97.5 0.0001 2.3E-09 72.2 5.1 34 14-49 1-34 (413)
235 PRK06847 hypothetical protein; 97.5 0.0012 2.5E-08 63.9 12.3 47 270-326 119-165 (375)
236 PRK06475 salicylate hydroxylas 97.5 0.00012 2.5E-09 71.6 5.3 34 14-49 3-36 (400)
237 PRK08244 hypothetical protein; 97.5 0.00012 2.5E-09 73.7 5.4 35 13-49 2-36 (493)
238 PRK08020 ubiF 2-octaprenyl-3-m 97.5 9.7E-05 2.1E-09 71.8 4.7 35 12-48 4-38 (391)
239 PRK07588 hypothetical protein; 97.5 0.00012 2.6E-09 71.3 5.1 35 14-50 1-35 (391)
240 TIGR03169 Nterm_to_SelD pyridi 97.5 0.0005 1.1E-08 66.2 9.3 91 13-114 145-244 (364)
241 PRK06185 hypothetical protein; 97.5 0.00013 2.8E-09 71.4 5.3 36 12-49 5-40 (407)
242 TIGR02732 zeta_caro_desat caro 97.5 0.00013 2.9E-09 72.7 5.3 39 15-55 1-39 (474)
243 PRK08243 4-hydroxybenzoate 3-m 97.5 0.00013 2.8E-09 71.1 5.1 35 13-49 2-36 (392)
244 COG0445 GidA Flavin-dependent 97.5 0.00044 9.5E-09 67.7 8.5 34 12-47 3-36 (621)
245 COG1231 Monoamine oxidase [Ami 97.5 0.00017 3.8E-09 69.2 5.4 42 11-54 5-46 (450)
246 PLN02487 zeta-carotene desatur 97.5 0.00016 3.5E-09 73.2 5.5 40 13-54 75-114 (569)
247 PLN02328 lysine-specific histo 97.5 0.00017 3.7E-09 75.3 5.8 41 12-54 237-277 (808)
248 COG2907 Predicted NAD/FAD-bind 97.4 0.00014 2.9E-09 67.2 4.3 41 11-54 6-46 (447)
249 TIGR00292 thiazole biosynthesi 97.4 0.0021 4.6E-08 58.5 12.1 56 270-325 112-171 (254)
250 PF07992 Pyr_redox_2: Pyridine 97.4 0.00026 5.5E-09 61.9 5.9 52 270-327 70-125 (201)
251 PLN02172 flavin-containing mon 97.4 0.00099 2.1E-08 66.2 10.6 64 250-327 111-178 (461)
252 PF03486 HI0933_like: HI0933-l 97.4 0.00058 1.3E-08 66.5 8.8 49 269-326 120-168 (409)
253 PRK06126 hypothetical protein; 97.4 0.00019 4.2E-09 73.0 5.6 36 12-49 6-41 (545)
254 PRK08132 FAD-dependent oxidore 97.4 0.00025 5.5E-09 72.2 6.2 37 12-50 22-58 (547)
255 PF00890 FAD_binding_2: FAD bi 97.4 0.00016 3.5E-09 70.9 4.5 38 15-54 1-38 (417)
256 PLN02612 phytoene desaturase 97.4 0.00023 5E-09 72.6 5.7 42 11-54 91-132 (567)
257 PRK06481 fumarate reductase fl 97.4 0.00023 5E-09 71.7 5.7 38 13-52 61-98 (506)
258 TIGR03219 salicylate_mono sali 97.4 0.00021 4.5E-09 70.2 5.2 35 14-50 1-36 (414)
259 PRK04176 ribulose-1,5-biphosph 97.4 0.0029 6.2E-08 57.8 12.2 56 270-325 116-174 (257)
260 PRK01438 murD UDP-N-acetylmura 97.4 0.00049 1.1E-08 68.9 7.9 77 12-114 15-91 (480)
261 PLN02927 antheraxanthin epoxid 97.4 0.00021 4.5E-09 73.3 5.1 36 11-48 79-114 (668)
262 PRK08274 tricarballylate dehyd 97.4 0.00026 5.6E-09 70.6 5.6 36 12-49 3-38 (466)
263 COG0562 Glf UDP-galactopyranos 97.4 0.00045 9.8E-09 63.3 6.5 39 14-54 2-40 (374)
264 PRK05335 tRNA (uracil-5-)-meth 97.4 0.00025 5.5E-09 68.6 5.3 34 14-49 3-36 (436)
265 PRK12409 D-amino acid dehydrog 97.4 0.00026 5.7E-09 69.3 5.4 35 14-50 2-36 (410)
266 KOG2404|consensus 97.3 0.00085 1.8E-08 61.5 7.9 39 14-54 10-48 (477)
267 PLN02985 squalene monooxygenas 97.3 0.00028 6.1E-09 71.0 5.4 36 11-48 41-76 (514)
268 PF13454 NAD_binding_9: FAD-NA 97.3 0.0012 2.6E-08 55.5 8.3 139 156-322 1-155 (156)
269 TIGR01813 flavo_cyto_c flavocy 97.3 0.00028 6.1E-09 69.8 5.2 37 15-53 1-38 (439)
270 PRK11259 solA N-methyltryptoph 97.3 0.00032 6.9E-09 67.8 5.3 36 13-50 3-38 (376)
271 PTZ00367 squalene epoxidase; P 97.3 0.00032 6.9E-09 71.3 5.3 36 11-48 31-66 (567)
272 PTZ00363 rab-GDP dissociation 97.3 0.00031 6.8E-09 69.1 5.1 43 11-55 2-44 (443)
273 PF01134 GIDA: Glucose inhibit 97.3 0.0011 2.3E-08 63.7 8.6 43 270-322 108-150 (392)
274 PF04820 Trp_halogenase: Trypt 97.3 0.00093 2E-08 66.3 8.3 34 15-48 1-35 (454)
275 PRK07121 hypothetical protein; 97.3 0.00035 7.6E-09 70.2 5.4 40 13-54 20-59 (492)
276 PRK12266 glpD glycerol-3-phosp 97.3 0.00043 9.4E-09 69.7 5.8 40 11-52 4-43 (508)
277 PRK08294 phenol 2-monooxygenas 97.3 0.00037 7.9E-09 72.0 5.4 36 12-49 31-67 (634)
278 TIGR01377 soxA_mon sarcosine o 97.2 0.00038 8.2E-09 67.4 5.2 34 14-49 1-34 (380)
279 TIGR02032 GG-red-SF geranylger 97.2 0.0032 6.9E-08 58.3 11.1 47 270-325 103-149 (295)
280 PRK09078 sdhA succinate dehydr 97.2 0.00046 1E-08 70.9 5.8 37 12-50 11-47 (598)
281 PRK07236 hypothetical protein; 97.2 0.0065 1.4E-07 59.0 13.4 134 152-326 6-156 (386)
282 PLN03000 amine oxidase 97.2 0.00048 1E-08 72.2 5.6 41 12-54 183-223 (881)
283 PRK13369 glycerol-3-phosphate 97.2 0.00054 1.2E-08 69.0 5.9 40 11-52 4-43 (502)
284 TIGR01989 COQ6 Ubiquinone bios 97.2 0.0004 8.6E-09 68.7 4.8 34 14-47 1-36 (437)
285 TIGR03364 HpnW_proposed FAD de 97.2 0.00051 1.1E-08 66.1 5.4 34 14-49 1-34 (365)
286 PRK08641 sdhA succinate dehydr 97.2 0.00049 1.1E-08 70.6 5.5 37 13-51 3-39 (589)
287 COG0665 DadA Glycine/D-amino a 97.2 0.00052 1.1E-08 66.5 5.5 39 11-51 2-40 (387)
288 KOG2820|consensus 97.2 0.0024 5.1E-08 59.0 9.1 38 11-50 5-42 (399)
289 TIGR03140 AhpF alkyl hydropero 97.2 0.0027 5.9E-08 64.1 10.6 48 270-327 279-326 (515)
290 KOG2495|consensus 97.2 0.00053 1.2E-08 65.1 5.0 90 14-113 219-329 (491)
291 PRK15317 alkyl hydroperoxide r 97.2 0.0023 4.9E-08 64.8 9.9 48 270-327 278-325 (517)
292 PRK05257 malate:quinone oxidor 97.2 0.0005 1.1E-08 68.8 5.1 40 11-50 3-42 (494)
293 PF01494 FAD_binding_3: FAD bi 97.2 0.003 6.4E-08 60.0 10.3 65 249-326 110-174 (356)
294 PRK12837 3-ketosteroid-delta-1 97.2 0.00052 1.1E-08 69.3 5.2 39 13-54 7-45 (513)
295 PLN02976 amine oxidase 97.1 0.00063 1.4E-08 74.2 6.0 43 11-55 691-733 (1713)
296 COG0644 FixC Dehydrogenases (f 97.1 0.0039 8.4E-08 60.8 11.1 136 153-326 4-154 (396)
297 TIGR01320 mal_quin_oxido malat 97.1 0.00051 1.1E-08 68.6 5.0 36 14-49 1-36 (483)
298 PRK07045 putative monooxygenas 97.1 0.008 1.7E-07 58.4 13.3 48 270-325 119-166 (388)
299 PRK12834 putative FAD-binding 97.1 0.00068 1.5E-08 69.0 5.9 39 13-53 4-44 (549)
300 TIGR00137 gid_trmFO tRNA:m(5)U 97.1 0.0006 1.3E-08 66.4 5.0 34 14-49 1-34 (433)
301 KOG0405|consensus 97.1 0.0013 2.8E-08 61.0 6.8 91 11-113 187-287 (478)
302 PRK06996 hypothetical protein; 97.1 0.00071 1.5E-08 66.1 5.1 36 11-48 9-48 (398)
303 PRK07804 L-aspartate oxidase; 97.1 0.00073 1.6E-08 68.6 5.2 38 13-52 16-53 (541)
304 COG0029 NadB Aspartate oxidase 97.0 0.0015 3.3E-08 63.4 6.9 33 15-50 9-41 (518)
305 PRK12835 3-ketosteroid-delta-1 97.0 0.0008 1.7E-08 68.9 5.4 40 12-53 10-49 (584)
306 COG0493 GltD NADPH-dependent g 97.0 0.0023 5E-08 63.1 8.2 140 13-207 5-157 (457)
307 COG2072 TrkA Predicted flavopr 97.0 0.0093 2E-07 59.0 12.5 125 152-323 8-143 (443)
308 PRK12839 hypothetical protein; 97.0 0.0011 2.4E-08 67.6 6.1 41 12-54 7-47 (572)
309 PRK12844 3-ketosteroid-delta-1 97.0 0.00096 2.1E-08 68.0 5.5 40 13-54 6-45 (557)
310 TIGR01812 sdhA_frdA_Gneg succi 97.0 0.00085 1.8E-08 68.6 5.2 35 15-51 1-35 (566)
311 PRK05868 hypothetical protein; 97.0 0.012 2.7E-07 56.8 13.0 47 270-326 116-162 (372)
312 TIGR02462 pyranose_ox pyranose 97.0 0.00089 1.9E-08 67.4 5.1 39 14-54 1-39 (544)
313 PLN02463 lycopene beta cyclase 97.0 0.0072 1.5E-07 59.8 11.3 132 153-326 29-171 (447)
314 PRK00711 D-amino acid dehydrog 97.0 0.00086 1.9E-08 65.8 4.8 34 15-50 2-35 (416)
315 PRK06175 L-aspartate oxidase; 97.0 0.001 2.2E-08 65.7 5.3 37 13-52 4-40 (433)
316 PRK07057 sdhA succinate dehydr 97.0 0.0012 2.6E-08 67.8 6.0 35 13-49 12-46 (591)
317 PRK01747 mnmC bifunctional tRN 97.0 0.00093 2E-08 69.7 5.2 35 14-50 261-295 (662)
318 PRK07803 sdhA succinate dehydr 97.0 0.00098 2.1E-08 68.8 5.2 37 13-51 8-44 (626)
319 PRK06452 sdhA succinate dehydr 97.0 0.001 2.2E-08 67.9 5.3 37 13-51 5-41 (566)
320 PTZ00139 Succinate dehydrogena 97.0 0.001 2.2E-08 68.6 5.2 38 13-52 29-66 (617)
321 TIGR01373 soxB sarcosine oxida 97.0 0.0013 2.8E-08 64.3 5.8 38 11-49 28-66 (407)
322 TIGR03329 Phn_aa_oxid putative 96.9 0.001 2.2E-08 66.3 5.0 37 13-49 24-60 (460)
323 PRK12845 3-ketosteroid-delta-1 96.9 0.001 2.2E-08 67.8 5.1 40 12-54 15-54 (564)
324 KOG2614|consensus 96.9 0.0012 2.5E-08 62.8 5.0 36 13-50 2-37 (420)
325 PRK08958 sdhA succinate dehydr 96.9 0.0013 2.7E-08 67.5 5.7 38 12-51 6-43 (588)
326 PRK11101 glpA sn-glycerol-3-ph 96.9 0.0013 2.8E-08 67.0 5.6 35 13-49 6-40 (546)
327 TIGR01316 gltA glutamate synth 96.9 0.0044 9.5E-08 61.5 9.3 36 12-49 271-306 (449)
328 PRK13339 malate:quinone oxidor 96.9 0.0012 2.7E-08 65.8 5.3 39 12-50 5-43 (497)
329 PLN00128 Succinate dehydrogena 96.9 0.0012 2.6E-08 68.2 5.3 37 13-51 50-86 (635)
330 PRK07364 2-octaprenyl-6-methox 96.9 0.018 3.8E-07 56.5 13.3 49 271-326 135-183 (415)
331 COG3573 Predicted oxidoreducta 96.9 0.01 2.2E-07 54.8 10.5 35 12-48 4-38 (552)
332 PRK10157 putative oxidoreducta 96.9 0.0081 1.8E-07 59.2 10.8 45 270-324 120-164 (428)
333 PTZ00383 malate:quinone oxidor 96.9 0.0015 3.3E-08 65.3 5.6 38 12-49 44-81 (497)
334 PRK07573 sdhA succinate dehydr 96.9 0.0013 2.9E-08 68.0 5.3 36 13-50 35-70 (640)
335 PRK06069 sdhA succinate dehydr 96.9 0.0012 2.7E-08 67.5 5.0 38 13-52 5-45 (577)
336 PRK09853 putative selenate red 96.9 0.0051 1.1E-07 65.9 9.6 37 150-207 537-573 (1019)
337 PRK08773 2-octaprenyl-3-methyl 96.8 0.0077 1.7E-07 58.6 10.2 47 270-326 125-171 (392)
338 PF00732 GMC_oxred_N: GMC oxid 96.8 0.0011 2.4E-08 61.8 4.1 54 270-325 205-259 (296)
339 COG1148 HdrA Heterodisulfide r 96.8 0.0069 1.5E-07 58.6 9.3 37 152-209 124-160 (622)
340 PLN02815 L-aspartate oxidase 96.8 0.0017 3.8E-08 66.4 5.7 38 12-52 28-65 (594)
341 PLN02464 glycerol-3-phosphate 96.8 0.0016 3.5E-08 67.2 5.5 39 12-52 70-108 (627)
342 PRK06834 hypothetical protein; 96.8 0.012 2.6E-07 59.1 11.5 135 153-326 4-158 (488)
343 PRK06854 adenylylsulfate reduc 96.8 0.0015 3.2E-08 67.3 5.0 35 13-49 11-47 (608)
344 PRK06184 hypothetical protein; 96.8 0.0078 1.7E-07 60.7 10.0 50 270-326 121-170 (502)
345 PF06100 Strep_67kDa_ant: Stre 96.8 0.013 2.8E-07 57.4 10.9 41 14-54 3-45 (500)
346 PRK07588 hypothetical protein; 96.8 0.022 4.7E-07 55.4 12.8 46 271-326 115-160 (391)
347 PRK12770 putative glutamate sy 96.8 0.0051 1.1E-07 59.0 8.2 34 13-48 172-206 (352)
348 PRK12831 putative oxidoreducta 96.8 0.0098 2.1E-07 59.3 10.3 36 11-48 279-314 (464)
349 PRK06134 putative FAD-binding 96.7 0.0019 4.2E-08 66.1 5.4 41 12-54 11-51 (581)
350 TIGR01176 fum_red_Fp fumarate 96.7 0.0019 4.1E-08 66.1 5.2 40 13-52 3-42 (580)
351 PTZ00306 NADH-dependent fumara 96.7 0.0018 4E-08 71.5 5.4 39 13-53 409-447 (1167)
352 PRK12779 putative bifunctional 96.7 0.0044 9.6E-08 66.7 8.1 36 151-207 305-340 (944)
353 PRK09231 fumarate reductase fl 96.7 0.002 4.2E-08 66.1 5.2 40 13-52 4-43 (582)
354 PRK06753 hypothetical protein; 96.7 0.029 6.3E-07 54.1 13.0 131 154-326 2-154 (373)
355 COG4529 Uncharacterized protei 96.7 0.0066 1.4E-07 59.0 8.2 61 153-231 2-64 (474)
356 PRK08071 L-aspartate oxidase; 96.7 0.0022 4.8E-08 64.7 5.2 37 13-52 3-39 (510)
357 PRK08626 fumarate reductase fl 96.7 0.0022 4.8E-08 66.5 5.2 36 13-50 5-40 (657)
358 PRK08275 putative oxidoreducta 96.7 0.0021 4.4E-08 65.6 5.0 37 13-49 9-45 (554)
359 PRK06475 salicylate hydroxylas 96.7 0.027 5.8E-07 55.0 12.6 64 249-326 106-169 (400)
360 PRK07395 L-aspartate oxidase; 96.7 0.0022 4.8E-08 65.2 5.1 38 12-52 8-45 (553)
361 PLN02697 lycopene epsilon cycl 96.7 0.0077 1.7E-07 60.7 8.8 131 153-325 109-249 (529)
362 COG0654 UbiH 2-polyprenyl-6-me 96.7 0.025 5.5E-07 55.0 12.2 61 249-325 103-163 (387)
363 KOG2960|consensus 96.7 0.00048 1E-08 59.3 0.1 43 13-55 76-119 (328)
364 PRK08163 salicylate hydroxylas 96.6 0.028 6E-07 54.7 12.5 45 272-326 124-168 (396)
365 PRK11445 putative oxidoreducta 96.6 0.04 8.8E-07 52.8 13.3 49 270-325 110-158 (351)
366 PRK09897 hypothetical protein; 96.6 0.011 2.3E-07 59.7 9.6 43 273-324 124-166 (534)
367 PRK07608 ubiquinone biosynthes 96.6 0.025 5.5E-07 54.8 12.1 42 273-325 127-168 (388)
368 PRK12843 putative FAD-binding 96.6 0.0028 6E-08 65.0 5.5 41 13-55 16-56 (578)
369 PRK01438 murD UDP-N-acetylmura 96.6 0.0043 9.4E-08 62.1 6.7 35 151-206 15-49 (480)
370 PRK09077 L-aspartate oxidase; 96.6 0.0031 6.7E-08 64.0 5.7 38 12-52 7-44 (536)
371 PRK10015 oxidoreductase; Provi 96.6 0.0097 2.1E-07 58.7 8.9 46 270-325 120-165 (429)
372 PRK07333 2-octaprenyl-6-methox 96.6 0.025 5.4E-07 55.1 11.7 47 270-326 123-169 (403)
373 TIGR01811 sdhA_Bsu succinate d 96.6 0.0023 5.1E-08 65.8 4.5 33 16-50 1-33 (603)
374 COG1635 THI4 Ribulose 1,5-bisp 96.6 0.039 8.4E-07 48.3 11.1 137 152-326 30-180 (262)
375 TIGR01813 flavo_cyto_c flavocy 96.6 0.013 2.9E-07 57.9 9.6 48 270-321 142-189 (439)
376 TIGR02061 aprA adenosine phosp 96.5 0.0029 6.2E-08 65.0 5.0 33 15-49 1-37 (614)
377 TIGR01790 carotene-cycl lycope 96.5 0.018 3.8E-07 56.0 10.2 33 154-207 1-33 (388)
378 KOG2311|consensus 96.5 0.01 2.2E-07 57.3 8.1 35 11-47 26-60 (679)
379 PRK08205 sdhA succinate dehydr 96.5 0.0034 7.4E-08 64.4 5.3 36 13-51 5-40 (583)
380 KOG3923|consensus 96.5 0.011 2.3E-07 53.9 7.7 37 12-48 2-43 (342)
381 PRK11749 dihydropyrimidine deh 96.5 0.011 2.5E-07 58.7 8.9 35 12-48 272-307 (457)
382 PRK06185 hypothetical protein; 96.5 0.037 8.1E-07 54.0 12.4 48 271-325 122-170 (407)
383 PRK05192 tRNA uridine 5-carbox 96.5 0.026 5.7E-07 57.4 11.3 43 271-323 114-156 (618)
384 PRK09126 hypothetical protein; 96.5 0.025 5.4E-07 55.0 10.8 47 270-326 123-169 (392)
385 TIGR01988 Ubi-OHases Ubiquinon 96.4 0.022 4.7E-07 55.1 10.1 43 273-325 122-164 (385)
386 PRK08020 ubiF 2-octaprenyl-3-m 96.4 0.045 9.8E-07 53.1 12.3 46 271-326 126-171 (391)
387 COG3075 GlpB Anaerobic glycero 96.4 0.0046 1E-07 57.0 4.7 34 13-48 2-35 (421)
388 TIGR01984 UbiH 2-polyprenyl-6- 96.4 0.047 1E-06 52.8 12.2 45 271-325 119-163 (382)
389 PRK08132 FAD-dependent oxidore 96.4 0.071 1.5E-06 54.4 14.0 49 271-326 139-187 (547)
390 PRK08244 hypothetical protein; 96.4 0.023 4.9E-07 57.2 10.2 50 270-326 112-161 (493)
391 PRK14106 murD UDP-N-acetylmura 96.4 0.012 2.6E-07 58.5 8.1 77 12-113 4-80 (450)
392 PRK08849 2-octaprenyl-3-methyl 96.4 0.033 7.2E-07 54.0 11.0 46 271-326 124-169 (384)
393 KOG1399|consensus 96.4 0.025 5.4E-07 55.7 10.0 127 152-323 6-152 (448)
394 COG1053 SdhA Succinate dehydro 96.4 0.0051 1.1E-07 62.3 5.4 38 12-51 5-42 (562)
395 PLN02852 ferredoxin-NADP+ redu 96.4 0.012 2.5E-07 58.8 7.8 38 151-207 25-62 (491)
396 TIGR03143 AhpF_homolog putativ 96.4 0.026 5.6E-07 57.6 10.5 86 12-114 142-247 (555)
397 TIGR01318 gltD_gamma_fam gluta 96.3 0.0095 2.1E-07 59.4 7.1 36 151-207 140-175 (467)
398 PRK06183 mhpA 3-(3-hydroxyphen 96.3 0.043 9.2E-07 55.9 11.9 50 271-326 127-176 (538)
399 PRK12778 putative bifunctional 96.3 0.016 3.5E-07 61.4 8.9 35 12-48 569-604 (752)
400 PRK07538 hypothetical protein; 96.3 0.051 1.1E-06 53.3 11.9 48 273-325 119-166 (413)
401 PTZ00188 adrenodoxin reductase 96.3 0.015 3.2E-07 57.6 7.8 38 151-208 38-75 (506)
402 TIGR00136 gidA glucose-inhibit 96.2 0.036 7.7E-07 56.4 10.6 46 271-325 110-155 (617)
403 TIGR01317 GOGAT_sm_gam glutama 96.2 0.014 2.9E-07 58.6 7.7 36 151-207 142-177 (485)
404 PRK05714 2-octaprenyl-3-methyl 96.2 0.072 1.6E-06 52.0 12.6 47 270-326 124-170 (405)
405 PRK02106 choline dehydrogenase 96.2 0.0061 1.3E-07 62.3 5.2 36 13-49 5-40 (560)
406 PRK06126 hypothetical protein; 96.2 0.073 1.6E-06 54.3 12.9 51 271-326 140-190 (545)
407 PF01266 DAO: FAD dependent ox 96.2 0.023 4.9E-07 54.0 8.8 47 270-326 159-205 (358)
408 KOG1298|consensus 96.2 0.006 1.3E-07 57.4 4.5 35 12-48 44-78 (509)
409 PRK08013 oxidoreductase; Provi 96.2 0.073 1.6E-06 52.0 12.4 46 271-326 125-170 (400)
410 COG0578 GlpA Glycerol-3-phosph 96.1 0.0088 1.9E-07 59.6 5.5 41 11-53 10-50 (532)
411 PRK02705 murD UDP-N-acetylmura 96.1 0.013 2.7E-07 58.4 6.7 79 15-113 2-80 (459)
412 PRK07190 hypothetical protein; 96.1 0.068 1.5E-06 53.6 11.8 47 270-326 121-167 (487)
413 PF12831 FAD_oxidored: FAD dep 96.1 0.004 8.7E-08 61.4 2.9 49 268-322 100-148 (428)
414 PRK00711 D-amino acid dehydrog 96.1 0.042 9E-07 53.8 10.0 46 270-325 213-258 (416)
415 PRK13800 putative oxidoreducta 96.1 0.0067 1.5E-07 65.4 4.7 36 12-49 12-47 (897)
416 KOG1346|consensus 96.1 0.019 4.2E-07 54.6 7.1 94 11-114 345-450 (659)
417 TIGR03219 salicylate_mono sali 96.0 0.056 1.2E-06 53.0 10.8 43 273-325 118-160 (414)
418 COG2509 Uncharacterized FAD-de 96.0 0.049 1.1E-06 52.6 9.7 37 11-47 16-55 (486)
419 PRK08243 4-hydroxybenzoate 3-m 96.0 0.039 8.5E-07 53.7 9.5 51 270-326 115-165 (392)
420 PRK12809 putative oxidoreducta 96.0 0.021 4.5E-07 59.3 8.0 36 151-207 309-344 (639)
421 TIGR03315 Se_ygfK putative sel 96.0 0.022 4.8E-07 61.3 8.2 36 151-207 536-571 (1012)
422 PLN02985 squalene monooxygenas 96.0 0.072 1.6E-06 53.8 11.5 65 249-326 146-210 (514)
423 PLN02661 Putative thiazole syn 96.0 0.074 1.6E-06 50.5 10.8 54 270-324 185-244 (357)
424 PRK12810 gltD glutamate syntha 95.9 0.032 7E-07 55.7 8.7 37 12-50 280-317 (471)
425 PRK06481 fumarate reductase fl 95.9 0.048 1E-06 55.0 9.8 51 270-325 202-253 (506)
426 PRK06567 putative bifunctional 95.9 0.03 6.5E-07 59.7 8.5 36 150-206 381-416 (1028)
427 PRK08850 2-octaprenyl-6-methox 95.9 0.11 2.3E-06 50.8 11.9 46 271-326 125-170 (405)
428 PRK07121 hypothetical protein; 95.8 0.049 1.1E-06 54.7 9.6 48 270-322 189-237 (492)
429 PRK07512 L-aspartate oxidase; 95.8 0.012 2.6E-07 59.4 5.2 34 12-49 8-41 (513)
430 PRK07494 2-octaprenyl-6-methox 95.8 0.13 2.7E-06 50.0 12.0 44 272-326 126-169 (388)
431 COG0569 TrkA K+ transport syst 95.8 0.02 4.4E-07 51.1 5.9 32 14-47 1-32 (225)
432 KOG4254|consensus 95.8 0.0099 2.1E-07 57.1 3.9 51 11-63 12-63 (561)
433 PRK06617 2-octaprenyl-6-methox 95.8 0.17 3.6E-06 49.0 12.7 60 249-326 103-162 (374)
434 PF05834 Lycopene_cycl: Lycope 95.8 0.08 1.7E-06 51.2 10.4 42 274-325 102-143 (374)
435 COG2303 BetA Choline dehydroge 95.7 0.011 2.4E-07 60.0 4.5 37 11-49 5-41 (542)
436 PRK06996 hypothetical protein; 95.7 0.089 1.9E-06 51.3 10.6 46 270-322 127-172 (398)
437 TIGR02023 BchP-ChlP geranylger 95.7 0.11 2.5E-06 50.4 11.3 53 270-325 104-156 (388)
438 TIGR01789 lycopene_cycl lycope 95.7 0.086 1.9E-06 50.9 10.2 34 154-206 1-34 (370)
439 PRK12775 putative trifunctiona 95.7 0.028 6E-07 61.2 7.4 36 151-207 429-464 (1006)
440 PF00743 FMO-like: Flavin-bind 95.6 0.024 5.2E-07 57.3 6.4 35 153-208 2-36 (531)
441 KOG2665|consensus 95.5 0.011 2.4E-07 54.2 3.2 41 11-51 46-86 (453)
442 TIGR02028 ChlP geranylgeranyl 95.5 0.15 3.2E-06 49.8 11.3 33 154-207 2-34 (398)
443 PF13434 K_oxygenase: L-lysine 95.5 0.046 1E-06 52.1 7.6 39 11-49 188-226 (341)
444 PRK05732 2-octaprenyl-6-methox 95.5 0.2 4.4E-06 48.6 12.2 46 271-326 126-171 (395)
445 TIGR01810 betA choline dehydro 95.5 0.013 2.9E-07 59.4 4.0 49 270-323 206-254 (532)
446 PF00890 FAD_binding_2: FAD bi 95.5 0.087 1.9E-06 51.7 9.6 52 270-325 153-204 (417)
447 PRK12814 putative NADPH-depend 95.5 0.082 1.8E-06 55.1 9.7 36 11-48 321-357 (652)
448 PRK06719 precorrin-2 dehydroge 95.4 0.026 5.7E-07 47.4 5.0 34 11-46 11-44 (157)
449 COG1004 Ugd Predicted UDP-gluc 95.4 0.028 6.1E-07 53.4 5.4 47 14-62 1-47 (414)
450 PRK12835 3-ketosteroid-delta-1 95.4 0.096 2.1E-06 53.8 9.9 49 270-323 225-275 (584)
451 TIGR01372 soxA sarcosine oxida 95.3 0.095 2.1E-06 57.2 9.9 83 12-114 316-412 (985)
452 PRK08274 tricarballylate dehyd 95.3 0.28 6E-06 49.0 12.6 47 270-321 143-189 (466)
453 PLN02785 Protein HOTHEAD 95.3 0.03 6.4E-07 57.4 5.6 35 12-49 54-88 (587)
454 PRK12769 putative oxidoreducta 95.2 0.097 2.1E-06 54.6 9.4 36 12-49 467-503 (654)
455 COG1086 Predicted nucleoside-d 95.2 0.087 1.9E-06 52.4 8.3 48 11-58 114-161 (588)
456 COG0492 TrxB Thioredoxin reduc 95.2 0.13 2.9E-06 48.1 9.2 86 12-114 142-239 (305)
457 PRK11101 glpA sn-glycerol-3-ph 95.2 0.074 1.6E-06 54.2 8.2 53 269-325 160-212 (546)
458 KOG1238|consensus 95.1 0.027 5.8E-07 56.8 4.7 39 11-50 55-93 (623)
459 KOG2853|consensus 95.1 0.043 9.3E-07 51.0 5.5 37 13-49 86-124 (509)
460 TIGR02485 CobZ_N-term precorri 95.0 0.021 4.6E-07 56.3 3.7 30 18-49 1-30 (432)
461 TIGR01989 COQ6 Ubiquinone bios 95.0 0.38 8.2E-06 47.6 12.4 47 272-326 134-185 (437)
462 PF13241 NAD_binding_7: Putati 94.9 0.028 6.1E-07 43.5 3.4 34 12-47 6-39 (103)
463 PRK01747 mnmC bifunctional tRN 94.9 0.39 8.4E-06 50.2 12.7 59 272-340 421-481 (662)
464 PF01946 Thi4: Thi4 family; PD 94.8 0.057 1.2E-06 47.3 5.3 56 270-326 108-167 (230)
465 TIGR01811 sdhA_Bsu succinate d 94.8 0.42 9E-06 49.4 12.5 49 271-322 146-194 (603)
466 COG1251 NirB NAD(P)H-nitrite r 94.8 0.071 1.5E-06 54.5 6.6 93 11-114 143-244 (793)
467 PRK06175 L-aspartate oxidase; 94.8 0.45 9.7E-06 47.0 12.3 47 270-322 141-187 (433)
468 TIGR00551 nadB L-aspartate oxi 94.7 0.44 9.6E-06 47.8 12.4 49 271-325 142-190 (488)
469 TIGR00275 flavoprotein, HI0933 94.7 0.2 4.2E-06 49.0 9.5 43 270-323 117-159 (400)
470 PF06039 Mqo: Malate:quinone o 94.7 0.047 1E-06 53.2 4.9 40 12-51 2-41 (488)
471 PRK12771 putative glutamate sy 94.7 0.08 1.7E-06 54.2 7.0 37 150-207 135-171 (564)
472 TIGR02360 pbenz_hydroxyl 4-hyd 94.7 0.49 1.1E-05 46.0 12.1 51 270-326 115-165 (390)
473 PRK08205 sdhA succinate dehydr 94.6 0.18 3.9E-06 51.9 9.4 52 270-324 152-206 (583)
474 KOG4716|consensus 94.6 0.04 8.6E-07 51.2 4.0 90 11-113 196-300 (503)
475 PF01210 NAD_Gly3P_dh_N: NAD-d 94.5 0.052 1.1E-06 45.6 4.3 31 15-47 1-31 (157)
476 TIGR01470 cysG_Nterm siroheme 94.5 0.069 1.5E-06 47.0 5.2 34 12-47 8-41 (205)
477 PLN00093 geranylgeranyl diphos 94.5 0.42 9.1E-06 47.5 11.2 34 153-207 40-73 (450)
478 TIGR01812 sdhA_frdA_Gneg succi 94.4 0.54 1.2E-05 48.2 12.3 50 270-323 141-190 (566)
479 PRK06854 adenylylsulfate reduc 94.4 0.24 5.2E-06 51.2 9.8 46 272-321 147-192 (608)
480 PRK08255 salicylyl-CoA 5-hydro 94.4 0.15 3.3E-06 54.1 8.5 34 154-207 2-36 (765)
481 PRK08275 putative oxidoreducta 94.4 0.7 1.5E-05 47.2 13.0 51 270-323 149-199 (554)
482 PRK07804 L-aspartate oxidase; 94.3 0.38 8.2E-06 49.0 10.9 54 270-323 156-209 (541)
483 KOG2852|consensus 94.3 0.022 4.7E-07 51.7 1.6 41 11-51 8-52 (380)
484 COG0445 GidA Flavin-dependent 94.2 0.11 2.3E-06 51.6 6.2 45 270-323 113-157 (621)
485 PRK08641 sdhA succinate dehydr 94.2 0.28 6E-06 50.5 9.7 50 272-324 151-200 (589)
486 PRK08294 phenol 2-monooxygenas 94.2 0.41 9E-06 49.7 10.9 72 249-326 140-212 (634)
487 PRK15116 sulfur acceptor prote 94.1 0.18 3.9E-06 46.1 7.3 36 12-49 29-65 (268)
488 PRK13984 putative oxidoreducta 94.1 0.16 3.5E-06 52.4 7.9 37 150-207 281-317 (604)
489 PRK08958 sdhA succinate dehydr 94.0 0.33 7.1E-06 50.0 9.6 51 270-323 155-205 (588)
490 PF03721 UDPG_MGDP_dh_N: UDP-g 93.8 0.051 1.1E-06 47.0 2.9 87 14-112 1-87 (185)
491 PF01488 Shikimate_DH: Shikima 93.7 0.14 3E-06 41.8 5.3 34 12-47 11-45 (135)
492 KOG3851|consensus 93.7 0.032 6.9E-07 51.4 1.4 35 153-206 40-74 (446)
493 PRK06718 precorrin-2 dehydroge 93.6 0.12 2.7E-06 45.3 5.1 34 12-47 9-42 (202)
494 KOG2404|consensus 93.6 0.27 6E-06 45.5 7.2 48 270-322 157-204 (477)
495 PRK06452 sdhA succinate dehydr 93.5 0.34 7.4E-06 49.6 8.8 48 270-321 148-195 (566)
496 PF02737 3HCDH_N: 3-hydroxyacy 93.5 0.12 2.5E-06 44.5 4.6 32 15-48 1-32 (180)
497 PTZ00367 squalene epoxidase; P 93.5 1.1 2.4E-05 45.8 12.3 34 152-206 33-66 (567)
498 PLN02927 antheraxanthin epoxid 93.4 1.5 3.2E-05 45.6 13.2 35 151-206 80-114 (668)
499 PRK07573 sdhA succinate dehydr 93.4 0.53 1.1E-05 48.9 10.1 49 270-322 182-230 (640)
500 KOG3855|consensus 93.3 0.098 2.1E-06 50.0 4.1 35 13-47 36-72 (481)
No 1
>KOG1800|consensus
Probab=100.00 E-value=1.9e-56 Score=404.21 Aligned_cols=375 Identities=53% Similarity=0.890 Sum_probs=332.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
..+++|+|||+||||+++|..|.++.+++.|+|+|+.+.++|+.+||++|++++.+.+...+.+.+++..+.|..|..++
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~vG 97 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVG 97 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecceec
Confidence 44569999999999999999999977889999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHH
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARI 170 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~ 170 (388)
.++++.+.+..||+||||+|+...|.++|||.++.+|++++.|.+||+++|...++..+..+.+|+|||.|++++|+|+.
T Consensus 98 ~dvsl~eL~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARi 177 (468)
T KOG1800|consen 98 RDVSLKELTDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARI 177 (468)
T ss_pred ccccHHHHhhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhh
Confidence 99999999999999999999998899999999999999999999999999999888778889999999999999999999
Q ss_pred hccCCcccc-cccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccc--cc
Q psy4525 171 LLSPVDQLK-STDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATL--AR 247 (388)
Q Consensus 171 L~~~~~~~~-~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~ 247 (388)
|......+. .|||+..++..++...++.|+++.|+++.+..||.+||||+..+|+.+..+++.++...-...... .|
T Consensus 178 Lls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~~~~~~~R 257 (468)
T KOG1800|consen 178 LLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDESETPQHR 257 (468)
T ss_pred hhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCCCcccccCchhccceeCCcccccccC
Confidence 998888775 999999999999999999999999999999999999999999999999998887776333222333 48
Q ss_pred hhhHHHHHHHhhCCCCCC----CCCCceeEEEEecCcceeeeeCCCCceeEEEEccC-----ccccCCceeEEecceEEE
Q psy4525 248 PRKRLTELILKTSNPDES----KSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQ-----QALVTEDTELIPSGIAFR 318 (388)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~----~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~-----~~~~~~~~~~l~~D~Vi~ 318 (388)
+++|+.+.+.+.+.++.. .....+-..++|...+.+|.++..+ +..+.+... ..+.+++.+.++|++++.
T Consensus 258 pRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~-v~~~~~~~t~l~~~~~~~tg~~e~~p~~l~i~ 336 (468)
T KOG1800|consen 258 PRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADG-VSGVRFQVTILEGTQAVPTGAFETLPCGLLIR 336 (468)
T ss_pred chhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCccc-ccceEEEeeeehhhcccccCceEeeccceeEe
Confidence 899999999888765321 2334456788899999999876433 666655522 145678889999999999
Q ss_pred ccccCCccCCCCCcccCCCccc----------------------------------------------------------
Q psy4525 319 SIGYQSRCVDSDIPFNEKSCTV---------------------------------------------------------- 340 (388)
Q Consensus 319 a~G~~p~~~~~~l~~~~~~gi~---------------------------------------------------------- 340 (388)
++||+..+.+.++|||.+.|++
T Consensus 337 sIGYks~pv~~gipFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~GP~GvIattm~dAf~v~d~I~qD~~~~~~~ss~~ 416 (468)
T KOG1800|consen 337 SIGYKSVPVDSGIPFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKHGPTGVIATTMQDAFEVADTIVQDLKIQFLDSSSA 416 (468)
T ss_pred eeeecccccCCCCCcccccCcccCCCceEEeeccCCceEEEeeeccCCcceeeehhhhHHHHHHHHHHHHHHhhccchHH
Confidence 9999998888899999887765
Q ss_pred -----cCCCCCCeecchhhHHhHHHHHHccccCCCCccccCCHHHHHhhhc
Q psy4525 341 -----IPKEGVPVVTWEGWKAIDKEETERGKLKGKPREKIISIEEMISVSG 386 (388)
Q Consensus 341 -----l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 386 (388)
++.++...+.|++|++||+.|+++|+..|+.|+||++++||++.+.
T Consensus 417 ~l~~~l~~~~v~~v~w~dWe~I~~~E~~~Gk~~~k~reKf~t~Eeml~~~~ 467 (468)
T KOG1800|consen 417 GLEALLESRGVRVVSWSDWEKIDAKEVARGKGTGKPREKFVTFEEMLRLLG 467 (468)
T ss_pred HHHHhhhccCCceecchhHHHhhHHHHhhccccCCchHhcCCHHHHHHHhc
Confidence 5678889999999999999999999999999999999999998764
No 2
>PTZ00188 adrenodoxin reductase; Provisional
Probab=100.00 E-value=5e-54 Score=412.72 Aligned_cols=370 Identities=28% Similarity=0.528 Sum_probs=305.6
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
..+++|+||||||||++||.+|.+. .+++|+|||+.+.+||+++||++|+++..+.+...+...+...+++|..+..++
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~-~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG 115 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKH-ERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVG 115 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHh-cCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEec
Confidence 4568999999999999999987642 699999999999999999999999998888999998888877899999999999
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCC------------CCC----CCCeeecccccccccCCCCcc---ccC-c--
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIP------------GED----GKNIISARSFVGWYNGLPEDA---SLD-L-- 148 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~------------g~~----~~~v~~~~~~~~~~~~~~~~~---~~~-~-- 148 (388)
.+++.++....||+||+|||+.+. .+| |.+ .+|+|++.+|..|||+++++. ... .
T Consensus 116 ~Dvt~eeL~~~YDAVIlAtGA~~l---~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ayL~ 192 (506)
T PTZ00188 116 VDLKMEELRNHYNCVIFCCGASEV---SIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNYLN 192 (506)
T ss_pred CccCHHHHHhcCCEEEEEcCCCCC---CCCcccccceeeeccccccccccCcEEehheEEEeecCCCCcccccccccccc
Confidence 888888887899999999998863 344 554 679999999999999998643 111 0
Q ss_pred -CCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCce
Q psy4525 149 -SLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQ 227 (388)
Q Consensus 149 -~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~ 227 (388)
....++++|||+|++|+|+|+.|++.+++|.+|||+.++++.|++..+++|+++.|+++.+.+||++|++||.++++++
T Consensus 193 p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~kElrEL~~l~~~~ 272 (506)
T PTZ00188 193 SFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELRELISLENTK 272 (506)
T ss_pred ccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHhCCCHHHHHHHhcCCCCe
Confidence 1145789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccc---chhhhccccchhhH----HHHHHHhhCC--CCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEc
Q psy4525 228 TVFRNEQLCG---VHEASATLARPRKR----LTELILKTSN--PDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFA 298 (388)
Q Consensus 228 ~~~~~~~~~~---~~~~~~~l~~~~~~----~~~~~~~~~~--~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~ 298 (388)
..+++.+++. ... ...+.+..+| +.+++.++.. .........+.+.++|..+|++|.++ +++|.++++.
T Consensus 273 v~v~~~d~~~~~~~~~-~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~ei~~~-~~~v~~v~~~ 350 (506)
T PTZ00188 273 VILSKKNYDLCCHLKS-DEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQIRPI-DGAMKNVELE 350 (506)
T ss_pred EEEChhhhcccccccc-hhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEccCCceEEECC-CCcEeEEEEE
Confidence 9999888752 222 3345666665 6667776653 11110124589999999999999963 3789999988
Q ss_pred cCcc-----ccCCceeEEecceEEEccccCCccCCCCCcccCCC----c---------------------cc--------
Q psy4525 299 NQQA-----LVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKS----C---------------------TV-------- 340 (388)
Q Consensus 299 ~~~~-----~~~~~~~~l~~D~Vi~a~G~~p~~~~~~l~~~~~~----g---------------------i~-------- 340 (388)
.+.. +.+++.+.++||+|+.|+||+..+++ ++||+... | ++
T Consensus 351 ~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~~-g~pFd~~~~n~~grv~~~~~g~Y~~GWiKrGP~GvIgtn~~da~ 429 (506)
T PTZ00188 351 LNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNFA-ENLYNQSVQMFKEDIGQHKFAIFKAGWFDKGPKGNIASQILNSK 429 (506)
T ss_pred EeecccCccCCCCeeEEEEcCEEEEcccccCCCCC-CCCccccCCCCCCcccCCCCCcEEeeecCcCCCceeccCcccHH
Confidence 4332 35677789999999999999998877 78887210 1 00
Q ss_pred ------------------------cCCCCCCeecchhhHHhHHHHHHccccCCCCccccCCHHHHHhhhcc
Q psy4525 341 ------------------------IPKEGVPVVTWEGWKAIDKEETERGKLKGKPREKIISIEEMISVSGN 387 (388)
Q Consensus 341 ------------------------l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 387 (388)
|..++..+++|++|++||++|+++|+..||+|.||++++||+++++.
T Consensus 430 ~t~~~v~~d~~~~~~~~~~~~~~ll~~r~~~~v~~~~W~~Id~~E~~~G~~~gr~R~K~~~~~eml~~~~~ 500 (506)
T PTZ00188 430 NSTHLVLNFLQKVDIFFDNDISSLLKEKQIPYVSFDDWTYLHQLEKQMGAQQNKIAQKFSQTGEVLRILKD 500 (506)
T ss_pred HHHHHHHHHHhhcCcccchhHHHHHHhcCCCeecHHHHHHHHHHHHHhccccCCCccccCCHHHHHHHHhh
Confidence 12346678999999999999999999999999999999999998763
No 3
>PLN02852 ferredoxin-NADP+ reductase
Probab=100.00 E-value=1.2e-53 Score=417.31 Aligned_cols=376 Identities=47% Similarity=0.799 Sum_probs=310.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
..+++|+||||||||++||..|++...|++|+|||+.+.+||+++||+.|.++..+.+...+.+.+...+++|+.+..++
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg 103 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLG 103 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEEC
Confidence 45689999999999999999998644699999999999999999999989998888888888888888899999999999
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccC-cCCCCCeEEEEcCChHHHHHHH
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLD-LSLDCEEATILGQGNVAMDVAR 169 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~vvVIGgG~sg~e~a~ 169 (388)
.+++.++....||+||+|||+.+.+.+++||.+.++|+++.+|+.++++++++.... ....+++|+|||+|++|+|+|.
T Consensus 104 ~dvtl~~L~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar 183 (491)
T PLN02852 104 RDVSLSELRDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCAR 183 (491)
T ss_pred ccccHHHHhhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHH
Confidence 888888877789999999999876788999999999999999999999887654332 2235799999999999999999
Q ss_pred HhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEeccccccc--chhhhccccc
Q psy4525 170 ILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCG--VHEASATLAR 247 (388)
Q Consensus 170 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 247 (388)
.|.+..++|..|||+.+.++.++..++++|++++|+++.+++|+++|+++|.+++++...+++.++.. .......+++
T Consensus 184 ~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r 263 (491)
T PLN02852 184 ILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASR 263 (491)
T ss_pred HHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchhhhhccch
Confidence 99999999999999999999999999999999999999999999999999999999999888877642 2222234678
Q ss_pred hhhHHHHHHHhhCCCCCC-CCCCceeEEEEecCcceeeeeC--CCCceeEEEEcc---------Cc--cccCCceeEEec
Q psy4525 248 PRKRLTELILKTSNPDES-KSNCSKYFRPIFLRSPTEFKLN--DNGAITGINFAN---------QQ--ALVTEDTELIPS 313 (388)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~-~~~~~~gv~~~~~~~~~~i~~~--~~~~v~~v~~~~---------~~--~~~~~~~~~l~~ 313 (388)
.++|..+.+.++...... .....++|.|+|..+|++|.++ ++++|.++++.. ++ .+.+++.+.++|
T Consensus 264 ~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~ 343 (491)
T PLN02852 264 PKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPC 343 (491)
T ss_pred hhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEEC
Confidence 888888888876432110 0013489999999999999853 236899998872 21 234667788999
Q ss_pred ceEEEccccCCccCCCCCcccCCCccc-----------------------------------------------------
Q psy4525 314 GIAFRSIGYQSRCVDSDIPFNEKSCTV----------------------------------------------------- 340 (388)
Q Consensus 314 D~Vi~a~G~~p~~~~~~l~~~~~~gi~----------------------------------------------------- 340 (388)
|.||.|+||++.+.. +++|+...|++
T Consensus 344 D~Vi~aIG~~~~p~~-~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~d~~ 422 (491)
T PLN02852 344 GLVLKSIGYKSLPVD-GLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAEDLE 422 (491)
T ss_pred CEEEEeecCCCCCCC-CCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHHHHH
Confidence 999999999853322 33332211110
Q ss_pred ---------------------cCCCCCCeecchhhHHhHHHHHHccccCCCCccccCCHHHHHhhhcc
Q psy4525 341 ---------------------IPKEGVPVVTWEGWKAIDKEETERGKLKGKPREKIISIEEMISVSGN 387 (388)
Q Consensus 341 ---------------------l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 387 (388)
|+.++..+|+|++|++||++|+++|+..||+|.||++++|||++++.
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~~v~~~~W~~id~~E~~~g~~~g~~r~K~~~~~~ml~~~~~ 490 (491)
T PLN02852 423 QGRLRGVASPPKPGRDGLLELLESRGVRVVPFSGWEKIDSAEKEAGRARGKPREKITSIEEMLKAANE 490 (491)
T ss_pred cCcccCcccCCCCcHHHHHHHHHHcCCCeeCHHHHHHHHHHHHHhccccCCCccccCCHHHHHHHhcc
Confidence 12345578999999999999999999999999999999999998864
No 4
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=100.00 E-value=3.6e-32 Score=285.79 Aligned_cols=261 Identities=23% Similarity=0.330 Sum_probs=201.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
...++|+|||||||||+||..|++ .|++|+|||+.+.+||+++||+ |.+..++++.++..+.++..|++|+.++.++
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar--~G~~VtVfE~~~~~GG~l~yGI-P~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG 380 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAV--EGFPVTVFEAFHDLGGVLRYGI-PEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG 380 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEeeCCCCCceEEccC-CCCcChHHHHHHHHHHHHhhcCeEEEeEEec
Confidence 457999999999999999999999 8999999999999999999999 8898999999999899999999999999999
Q ss_pred EEeeeccccc-ccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccc----cCcCCCCCeEEEEcCChHHH
Q psy4525 91 QDISLGDLTN-AYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDAS----LDLSLDCEEATILGQGNVAM 165 (388)
Q Consensus 91 ~~~~~~~~~~-~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~vvVIGgG~sg~ 165 (388)
.++++++... .||+|+||||+..++.+++||.+.++|+++.+|+...+....... ......+++|+|||||++|+
T Consensus 381 ~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~ 460 (944)
T PRK12779 381 KTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAM 460 (944)
T ss_pred cEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHH
Confidence 9998887765 799999999997667899999999999999999865432111000 01123589999999999999
Q ss_pred HHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccc
Q psy4525 166 DVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATL 245 (388)
Q Consensus 166 e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l 245 (388)
|+|..+. +.++ +|++++|++....+....++.+
T Consensus 461 D~A~ta~--------------------R~Ga-~Vtlv~rr~~~~mpa~~~e~~~-------------------------- 493 (944)
T PRK12779 461 DAARTAK--------------------RLGG-NVTIVYRRTKSEMPARVEELHH-------------------------- 493 (944)
T ss_pred HHHHHHH--------------------HcCC-EEEEEEecCcccccccHHHHHH--------------------------
Confidence 9999664 3455 6999999864333322222111
Q ss_pred cchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCC-CCceeEEEEc---------cCc--cccCCceeEEec
Q psy4525 246 ARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLND-NGAITGINFA---------NQQ--ALVTEDTELIPS 313 (388)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~-~~~v~~v~~~---------~~~--~~~~~~~~~l~~ 313 (388)
. .++|++++++..++++..++ ++++.++++. +++ .+.+++..+++|
T Consensus 494 ---------a-------------~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~a 551 (944)
T PRK12779 494 ---------A-------------LEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPV 551 (944)
T ss_pred ---------H-------------HHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEEC
Confidence 0 14799999999999998753 3467776542 122 123456678999
Q ss_pred ceEEEccccCCccCC----CCCcccCCCccccCC
Q psy4525 314 GIAFRSIGYQSRCVD----SDIPFNEKSCTVIPK 343 (388)
Q Consensus 314 D~Vi~a~G~~p~~~~----~~l~~~~~~gi~l~~ 343 (388)
|.||+|+|+.|+... .++.+++++.+++|+
T Consensus 552 D~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~ 585 (944)
T PRK12779 552 DLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEK 585 (944)
T ss_pred CEEEEcCCcCCChhhhhcccCceECCCCCEEECC
Confidence 999999999998742 245566555566664
No 5
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=1e-31 Score=265.15 Aligned_cols=262 Identities=25% Similarity=0.389 Sum_probs=193.6
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhH-HHHHHHHhhcCCCcEEEceEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKN-VINTFTKTGDNPRVNFYGNICL 89 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~-~~~~~~~~~~~~~i~~~~~~~v 89 (388)
.+.++|+||||||||+++|..|++ .|++|+|||+.+.+||++.|++ |.+....+ +.....+++++.|++++.++.+
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~--~G~~V~v~e~~~~~GG~l~~gi-p~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v 214 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAK--MGYDVTIFEALHEPGGVLVYGI-PEFRLPKETVVKKEIENIKKLGVKIETNVVV 214 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCCCCeeeecC-CCccCCccHHHHHHHHHHHHcCCEEEcCCEE
Confidence 567899999999999999999999 8999999999999999999998 66544443 7777777888899999999988
Q ss_pred EEEeeeccccc--ccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCcc-cc-CcCCCCCeEEEEcCChHHH
Q psy4525 90 GQDISLGDLTN--AYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDA-SL-DLSLDCEEATILGQGNVAM 165 (388)
Q Consensus 90 ~~~~~~~~~~~--~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~-~~-~~~~~~~~vvVIGgG~sg~ 165 (388)
+.+++.++... .||+||||||+..++.+++||.+.++|+++.+|+...+....+. .. .....+++|+|||+|++|+
T Consensus 215 ~~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~ 294 (464)
T PRK12831 215 GKTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAM 294 (464)
T ss_pred CCcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHH
Confidence 76666554422 59999999999544788999999999999999886543221111 00 1234579999999999999
Q ss_pred HHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccc
Q psy4525 166 DVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATL 245 (388)
Q Consensus 166 e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l 245 (388)
|+|..+. +.++ +|++++|++...++....++.
T Consensus 295 d~A~~l~--------------------r~Ga-~Vtlv~r~~~~~m~a~~~e~~--------------------------- 326 (464)
T PRK12831 295 DAARTAL--------------------RLGA-EVHIVYRRSEEELPARVEEVH--------------------------- 326 (464)
T ss_pred HHHHHHH--------------------HcCC-EEEEEeecCcccCCCCHHHHH---------------------------
Confidence 9999775 3454 499999986433221111111
Q ss_pred cchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEc---------cCcc--c-cCCceeEEec
Q psy4525 246 ARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFA---------NQQA--L-VTEDTELIPS 313 (388)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~---------~~~~--~-~~~~~~~l~~ 313 (388)
. ..++||+++++..++++..+++|++.++++. +++. + ..++..+++|
T Consensus 327 ---------~------------a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~ 385 (464)
T PRK12831 327 ---------H------------AKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEV 385 (464)
T ss_pred ---------H------------HHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEEC
Confidence 0 1157999999999999987666788887764 1211 1 1344568999
Q ss_pred ceEEEccccCCccCC----CCCcccCCCccccCCC
Q psy4525 314 GIAFRSIGYQSRCVD----SDIPFNEKSCTVIPKE 344 (388)
Q Consensus 314 D~Vi~a~G~~p~~~~----~~l~~~~~~gi~l~~~ 344 (388)
|.||+|+|+.|+... .++.++.++.+.+|+.
T Consensus 386 D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~ 420 (464)
T PRK12831 386 DTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEE 420 (464)
T ss_pred CEEEECCCCCCChhhhcccCCceECCCCcEEECCC
Confidence 999999999998742 3556665555667655
No 6
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=2.3e-31 Score=262.04 Aligned_cols=276 Identities=24% Similarity=0.347 Sum_probs=200.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
...++|+|||+||||+++|..|++ .|++|+|||+.+.+||.+.|++ |.+...+++.....+.+.+.+++++.++.++
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~--~G~~V~vie~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~ 207 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAK--AGHSVTVFEALHKPGGVVTYGI-PEFRLPKEIVVTEIKTLKKLGVTFRMNFLVG 207 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCcEeeecC-CCccCCHHHHHHHHHHHHhCCcEEEeCCccC
Confidence 456899999999999999999999 8999999999999999999998 6666667777777777888899999988776
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCcc--cc-CcCCCCCeEEEEcCChHHHHH
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDA--SL-DLSLDCEEATILGQGNVAMDV 167 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~--~~-~~~~~~~~vvVIGgG~sg~e~ 167 (388)
.++++++....||+||||||+..++.+++||.+.++|+++.+|+...+.+.... .. .....+++|+|||+|++|+|+
T Consensus 208 ~~v~~~~~~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~ 287 (449)
T TIGR01316 208 KTATLEELFSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDS 287 (449)
T ss_pred CcCCHHHHHhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHH
Confidence 666665544579999999998544688999999999999998875433221110 00 122357999999999999999
Q ss_pred HHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccc
Q psy4525 168 ARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLAR 247 (388)
Q Consensus 168 a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 247 (388)
|..+. +.+. +||+++|+.....+....++
T Consensus 288 A~~l~--------------------~~G~-~Vtlv~~~~~~~~~~~~~~~------------------------------ 316 (449)
T TIGR01316 288 ARTAL--------------------RLGA-EVHCLYRRTREDMTARVEEI------------------------------ 316 (449)
T ss_pred HHHHH--------------------HcCC-EEEEEeecCcccCCCCHHHH------------------------------
Confidence 99775 3454 59999998653322221111
Q ss_pred hhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEc---------cCc--c-ccCCceeEEecce
Q psy4525 248 PRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFA---------NQQ--A-LVTEDTELIPSGI 315 (388)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~---------~~~--~-~~~~~~~~l~~D~ 315 (388)
+. +.++||+++++..++++..++++++.++++. +++ . ..+++.++++||.
T Consensus 317 ------~~------------l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~ 378 (449)
T TIGR01316 317 ------AH------------AEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADA 378 (449)
T ss_pred ------HH------------HHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCE
Confidence 11 1267999999999999987656788777764 111 0 1134456899999
Q ss_pred EEEccccCCccCC---CCCcccCCCccccCCCCCCeecchhhHHhHH
Q psy4525 316 AFRSIGYQSRCVD---SDIPFNEKSCTVIPKEGVPVVTWEGWKAIDK 359 (388)
Q Consensus 316 Vi~a~G~~p~~~~---~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~ 359 (388)
||+|+|+.|+... .++.+++++++++|+..... ..+.|...|+
T Consensus 379 Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts-~~~VfA~GD~ 424 (449)
T TIGR01316 379 VIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRTS-IPGVFAGGDI 424 (449)
T ss_pred EEECCCCCCCchhhhccCcccCCCCeEEeCCCCccC-CCCEEEecCC
Confidence 9999999999742 35666665667776543221 2245555443
No 7
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.98 E-value=6.4e-31 Score=274.22 Aligned_cols=277 Identities=20% Similarity=0.329 Sum_probs=204.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
...++|+||||||||++||..|++ .|++|+|||+.+.+||+++||+ |.+...+++.+...+.+.+.|++|+.++.++
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~--~G~~V~v~e~~~~~GG~l~~gi-p~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~ 505 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAK--RGYDVTVFEALHEIGGVLKYGI-PEFRLPKKIVDVEIENLKKLGVKFETDVIVG 505 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCCeeeecC-CCCCCCHHHHHHHHHHHHHCCCEEECCCEEC
Confidence 457899999999999999999999 8999999999989999999999 7777777777777778888999999999887
Q ss_pred EEeeecccc-cccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccc-c-CcCCCCCeEEEEcCChHHHHH
Q psy4525 91 QDISLGDLT-NAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDAS-L-DLSLDCEEATILGQGNVAMDV 167 (388)
Q Consensus 91 ~~~~~~~~~-~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~-~-~~~~~~~~vvVIGgG~sg~e~ 167 (388)
.++++++.. ..||+||||||+..++.+++||.+.++|+++.+|+...+....... . .....+++|+|||||++|+|+
T Consensus 506 ~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~ 585 (752)
T PRK12778 506 KTITIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDS 585 (752)
T ss_pred CcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHH
Confidence 777776654 3699999999996447889999999999999998865442211110 0 122457999999999999999
Q ss_pred HHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccc
Q psy4525 168 ARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLAR 247 (388)
Q Consensus 168 a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 247 (388)
|..+. +.++++||+++|++....+....++.
T Consensus 586 A~~~~--------------------r~Ga~~Vtlv~r~~~~~~~~~~~e~~----------------------------- 616 (752)
T PRK12778 586 ARTAK--------------------RLGAERVTIVYRRSEEEMPARLEEVK----------------------------- 616 (752)
T ss_pred HHHHH--------------------HcCCCeEEEeeecCcccCCCCHHHHH-----------------------------
Confidence 99765 35666799999986532222111111
Q ss_pred hhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEc---------cCcc---ccCCceeEEecce
Q psy4525 248 PRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFA---------NQQA---LVTEDTELIPSGI 315 (388)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~---------~~~~---~~~~~~~~l~~D~ 315 (388)
. ..++||+++++..++++..++++++.++++. +++. ..+++..+++||.
T Consensus 617 -------~------------~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~ 677 (752)
T PRK12778 617 -------H------------AKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDL 677 (752)
T ss_pred -------H------------HHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCE
Confidence 1 1157999999999999987666788888764 1211 1235556899999
Q ss_pred EEEccccCCccCC----CCCcccCCCccccCCCCCCeecchhhHHhHH
Q psy4525 316 AFRSIGYQSRCVD----SDIPFNEKSCTVIPKEGVPVVTWEGWKAIDK 359 (388)
Q Consensus 316 Vi~a~G~~p~~~~----~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~ 359 (388)
||+|+|+.|+... .++.+++++.+.+|+.... -..+.|...|+
T Consensus 678 Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~gVfA~GD~ 724 (752)
T PRK12778 678 VIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQS-SIPGIYAGGDI 724 (752)
T ss_pred EEECcCCCCCccccccccCceECCCCCEEeCCCCCC-CCCCEEEeCCc
Confidence 9999999999742 2456665556667654421 12244444443
No 8
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.97 E-value=9.7e-31 Score=277.32 Aligned_cols=261 Identities=24% Similarity=0.344 Sum_probs=200.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
+.++|+|||||||||+||..|++ .|++|+|||+.+.+||.++||+ |.+...+++.....+.+.+.|++++.++.++.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~--~G~~VtV~E~~~~~GG~l~~gi-p~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~ 505 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVK--YGVDVTVYEALHVVGGVLQYGI-PSFRLPRDIIDREVQRLVDIGVKIETNKVIGK 505 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCcceeeccC-CccCCCHHHHHHHHHHHHHCCCEEEeCCccCC
Confidence 46899999999999999999999 8999999999999999999999 77777888888888889999999999988877
Q ss_pred Eeeecccc--cccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCC--cccc-CcCCCCCeEEEEcCChHHHH
Q psy4525 92 DISLGDLT--NAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPE--DASL-DLSLDCEEATILGQGNVAMD 166 (388)
Q Consensus 92 ~~~~~~~~--~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~--~~~~-~~~~~~~~vvVIGgG~sg~e 166 (388)
+++.++.. ..||+||||||+..++.+++||.+.++|+++.+|+...+.... +... .....+++|+|||||++|+|
T Consensus 506 ~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D 585 (1006)
T PRK12775 506 TFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMD 585 (1006)
T ss_pred ccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHH
Confidence 76665543 4799999999997557899999999999999999866542111 1000 12345899999999999999
Q ss_pred HHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhcccc
Q psy4525 167 VARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLA 246 (388)
Q Consensus 167 ~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 246 (388)
+|..+. +.|+++|++++|+....++....++.+
T Consensus 586 ~A~~a~--------------------rlGa~~Vtiv~rr~~~em~a~~~e~~~--------------------------- 618 (1006)
T PRK12775 586 CLRVAK--------------------RLGAPTVRCVYRRSEAEAPARIEEIRH--------------------------- 618 (1006)
T ss_pred HHHHHH--------------------HcCCCEEEEEeecCcccCCCCHHHHHH---------------------------
Confidence 988554 457778999998866544433322211
Q ss_pred chhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEcc---------Cc--cccCCceeEEecce
Q psy4525 247 RPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFAN---------QQ--ALVTEDTELIPSGI 315 (388)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~---------~~--~~~~~~~~~l~~D~ 315 (388)
..+.||+++++..++++..+++|++.++++.. ++ .+.+++..+++||.
T Consensus 619 ---------------------a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~ 677 (1006)
T PRK12775 619 ---------------------AKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDT 677 (1006)
T ss_pred ---------------------HHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCE
Confidence 12579999999999999876678888887641 21 12234556899999
Q ss_pred EEEccccCCccCC----CCCcccCCCccccCC
Q psy4525 316 AFRSIGYQSRCVD----SDIPFNEKSCTVIPK 343 (388)
Q Consensus 316 Vi~a~G~~p~~~~----~~l~~~~~~gi~l~~ 343 (388)
||+|+|+.|+... .++.++..+.+.+|+
T Consensus 678 Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~ 709 (1006)
T PRK12775 678 VIYALGTKANPIITQSTPGLALNKWGNIAADD 709 (1006)
T ss_pred EEECCCcCCChhhhhccCCcccCCCCcEEeCC
Confidence 9999999999742 245666544455554
No 9
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.97 E-value=6.2e-31 Score=255.10 Aligned_cols=309 Identities=24% Similarity=0.372 Sum_probs=240.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
...++|+|||+||||+++|..|.+ .|+.||+||+.+.+||.+.||+ |.+...+++.+...+.+++.|++|+.++.++
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~--~G~~Vtv~e~~~~~GGll~yGI-P~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG 197 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSR--AGHDVTVFERVALDGGLLLYGI-PDFKLPKDILDRRLELLERSGVEFKLNVRVG 197 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHh--CCCeEEEeCCcCCCceeEEecC-chhhccchHHHHHHHHHHHcCeEEEEcceEC
Confidence 456899999999999999999999 9999999999999999999999 9999999999999999999999999999999
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCC--CCcc-ccCcCCCCCeEEEEcCChHHHHH
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGL--PEDA-SLDLSLDCEEATILGQGNVAMDV 167 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~--~~~~-~~~~~~~~~~vvVIGgG~sg~e~ 167 (388)
.+++.++....||++++|||+..++.+++||.++++|+.+.+|+...+.. .... .......+++|+|||+|++++|+
T Consensus 198 ~~it~~~L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~ 277 (457)
T COG0493 198 RDITLEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDC 277 (457)
T ss_pred CcCCHHHHHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHH
Confidence 99999888888999999999988889999999999999999998665421 1111 01222345999999999999999
Q ss_pred HHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccc
Q psy4525 168 ARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLAR 247 (388)
Q Consensus 168 a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 247 (388)
+.... ..|+++|+.++|...- . ++. ++
T Consensus 278 ~~t~~--------------------r~Ga~~v~~~~~~~~~--~-------~~~------------------------~~ 304 (457)
T COG0493 278 AGTAL--------------------RLGAKSVTCFYREDRD--D-------ETN------------------------EW 304 (457)
T ss_pred HHHHh--------------------hcCCeEEEEecccccc--c-------cCC------------------------cc
Confidence 97332 4788899998744321 0 000 00
Q ss_pred hhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccC------------c-cccCCceeEEecc
Q psy4525 248 PRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQ------------Q-ALVTEDTELIPSG 314 (388)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~------------~-~~~~~~~~~l~~D 314 (388)
+.......+ +....+|+.+.+...+.++.++++|+|.++++... . .-..++...+++|
T Consensus 305 ~~~~~~~~~---------~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD 375 (457)
T COG0493 305 PTWAAQLEV---------RSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAAD 375 (457)
T ss_pred cccchhhhh---------hhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHH
Confidence 000000000 11336789999999999999988899998866521 0 1124677889999
Q ss_pred eEEEccccCCccCC-----CCCcccCCCccccCCC----CCCeecchhhHHhH-HHHHHccccCCCCccccCCHHHHHhh
Q psy4525 315 IAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKE----GVPVVTWEGWKAID-KEETERGKLKGKPREKIISIEEMISV 384 (388)
Q Consensus 315 ~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~----~~~~~~~~~w~~~~-~~~~~~~~~~~~~~~k~~~~~~~~~~ 384 (388)
+|+.|+|+.++... .++..+..+.+.+++. ++.. .|.+|..++ +++...|...||.+.|.++.++|.+.
T Consensus 376 ~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~-vfa~gD~~~g~~~vv~ai~eGr~aak~i~~~~l~~~ 454 (457)
T COG0493 376 TVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPG-VFAGGDAVRGAALVVWAIAEGREAAKAIDKELLLGK 454 (457)
T ss_pred HHHHHhccCCCcccccccccccccCCCCceecccccccccCCC-eeeCceeccchhhhhhHHhhchHHHHhhhHHHHhhc
Confidence 99999999987543 1345555555555544 3334 899999999 99999999999999999999999875
Q ss_pred h
Q psy4525 385 S 385 (388)
Q Consensus 385 ~ 385 (388)
.
T Consensus 455 ~ 455 (457)
T COG0493 455 A 455 (457)
T ss_pred c
Confidence 4
No 10
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.97 E-value=2.2e-29 Score=258.94 Aligned_cols=261 Identities=23% Similarity=0.362 Sum_probs=194.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
.+.++|+|||+|||||++|..|++ .|++|+|||+.+.+||+++|++ |.+...+++.....+.+++.|++++.++.++
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~--~G~~V~V~E~~~~~GG~l~~gi-p~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~ 401 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLAR--NGVAVTVYDRHPEIGGLLTFGI-PAFKLDKSLLARRREIFSAMGIEFELNCEVG 401 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCceeeecC-CCccCCHHHHHHHHHHHHHCCeEEECCCEeC
Confidence 356899999999999999999999 8999999999999999999998 7777777888777788888999999999887
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeeccccccccc----CCCCcccc-CcCCCCCeEEEEcCChHHH
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYN----GLPEDASL-DLSLDCEEATILGQGNVAM 165 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~----~~~~~~~~-~~~~~~~~vvVIGgG~sg~ 165 (388)
.+++..+....||+|++|||+..++.+++||.+.++|+++.+|+.... ........ .....+++|+|||+|++|+
T Consensus 402 ~~i~~~~~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~ 481 (654)
T PRK12769 402 KDISLESLLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAM 481 (654)
T ss_pred CcCCHHHHHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHH
Confidence 666655544589999999999876678999999999998877652111 11100000 1124579999999999999
Q ss_pred HHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccc
Q psy4525 166 DVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATL 245 (388)
Q Consensus 166 e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l 245 (388)
|+|..+. +.++++|++++|++....+..+.++.+
T Consensus 482 d~A~~a~--------------------r~ga~~Vt~i~~~~~~~~~~~~~e~~~-------------------------- 515 (654)
T PRK12769 482 DCVRTAL--------------------RHGASNVTCAYRRDEANMPGSKKEVKN-------------------------- 515 (654)
T ss_pred HHHHHHH--------------------HcCCCeEEEeEecCCCCCCCCHHHHHH--------------------------
Confidence 9998554 367778999999876544433333211
Q ss_pred cchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEcc---------Ccc---ccCCceeEEec
Q psy4525 246 ARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFAN---------QQA---LVTEDTELIPS 313 (388)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~---------~~~---~~~~~~~~l~~ 313 (388)
+.+.||+++++..++++..++++++.++++.. |+. ...++..++++
T Consensus 516 ----------------------~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~ 573 (654)
T PRK12769 516 ----------------------AREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPA 573 (654)
T ss_pred ----------------------HHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEEC
Confidence 12579999999999999865567888877631 211 12355568999
Q ss_pred ceEEEccccCCccC--C--CCCcccCCCccccC
Q psy4525 314 GIAFRSIGYQSRCV--D--SDIPFNEKSCTVIP 342 (388)
Q Consensus 314 D~Vi~a~G~~p~~~--~--~~l~~~~~~gi~l~ 342 (388)
|.||+|+|+.|+.. . .++.++.++.+.+|
T Consensus 574 D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd 606 (654)
T PRK12769 574 DAVIMAFGFNPHGMPWLESHGVTVDKWGRIIAD 606 (654)
T ss_pred CEEEECccCCCCccccccccCCcCCCCCCEEeC
Confidence 99999999999852 1 34555544445554
No 11
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.97 E-value=1.6e-29 Score=250.09 Aligned_cols=258 Identities=25% Similarity=0.375 Sum_probs=192.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
..+++|+||||||||+++|..|++ .|++|+|||+.+.+||++.+++ |.+....++..+..+++.+.+++++.++.++
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~--~g~~V~lie~~~~~gG~l~~gi-p~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~ 214 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLAR--KGYDVTIFEARDKAGGLLRYGI-PEFRLPKDIVDREVERLLKLGVEIRTNTEVG 214 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCCCCcEeeccC-CCccCCHHHHHHHHHHHHHcCCEEEeCCEEC
Confidence 456899999999999999999999 8999999999999999999988 7666667788888888888899999988876
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHH
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARI 170 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~ 170 (388)
.+++.++....||+||+|||+..++.+++||.+.++++++.+++......... .....+++|+|||+|++|+|+|..
T Consensus 215 ~~v~~~~~~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~---~~~~~g~~VvViGgG~~g~e~A~~ 291 (457)
T PRK11749 215 RDITLDELRAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVAD---YDLPVGKRVVVIGGGNTAMDAART 291 (457)
T ss_pred CccCHHHHHhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhcccc---ccCCCCCeEEEECCCHHHHHHHHH
Confidence 55555444457999999999975567889998888999888877543321100 112257999999999999999997
Q ss_pred hccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhh
Q psy4525 171 LLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRK 250 (388)
Q Consensus 171 L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 250 (388)
|. +.+.++|++++|++....+....++.
T Consensus 292 l~--------------------~~G~~~Vtlv~~~~~~~~~~~~~~~~-------------------------------- 319 (457)
T PRK11749 292 AK--------------------RLGAESVTIVYRRGREEMPASEEEVE-------------------------------- 319 (457)
T ss_pred HH--------------------HcCCCeEEEeeecCcccCCCCHHHHH--------------------------------
Confidence 75 35666899999986543332222211
Q ss_pred HHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEcc---------Cc--cccCCceeEEecceEEEc
Q psy4525 251 RLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFAN---------QQ--ALVTEDTELIPSGIAFRS 319 (388)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~---------~~--~~~~~~~~~l~~D~Vi~a 319 (388)
. +.+.||+++++..++++..++ +.+.++++.. ++ ....+++++++||.||+|
T Consensus 320 ----~------------~~~~GV~i~~~~~v~~i~~~~-~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a 382 (457)
T PRK11749 320 ----H------------AKEEGVEFEWLAAPVEILGDE-GRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKA 382 (457)
T ss_pred ----H------------HHHCCCEEEecCCcEEEEecC-CceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEEC
Confidence 1 125799999999999998643 3445555431 11 011356678999999999
Q ss_pred cccCCccCC----CCCcccCCCccccCC
Q psy4525 320 IGYQSRCVD----SDIPFNEKSCTVIPK 343 (388)
Q Consensus 320 ~G~~p~~~~----~~l~~~~~~gi~l~~ 343 (388)
+|++|+... .++.+++.+++.+|+
T Consensus 383 ~G~~p~~~l~~~~~gl~~~~~g~i~vd~ 410 (457)
T PRK11749 383 IGQTPNPLILSTTPGLELNRWGTIIADD 410 (457)
T ss_pred ccCCCCchhhccccCccCCCCCCEEeCC
Confidence 999999532 346677666777776
No 12
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.97 E-value=6.8e-29 Score=245.45 Aligned_cols=261 Identities=24% Similarity=0.408 Sum_probs=193.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
.+.++|+|||+||+|+++|..|++ .|++|++||+.+.+||+++||+ |.+...+++.....+++.+.|++++.++.++
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~--~G~~V~i~e~~~~~gG~l~~gi-p~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~ 215 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILAR--AGVQVVVFDRHPEIGGLLTFGI-PSFKLDKAVLSRRREIFTAMGIEFHLNCEVG 215 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCCceeeecC-ccccCCHHHHHHHHHHHHHCCCEEECCCEeC
Confidence 356899999999999999999999 8999999999999999999998 7777777788878888888999999998886
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeeccccccc----ccCCCCccccC-cCCCCCeEEEEcCChHHH
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGW----YNGLPEDASLD-LSLDCEEATILGQGNVAM 165 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~----~~~~~~~~~~~-~~~~~~~vvVIGgG~sg~ 165 (388)
.+++.++....||+||+|||+.+.+.+++||.+.++|+++.+|+.. +.+........ ....+++++|||+|++|+
T Consensus 216 ~~~~~~~~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~ 295 (467)
T TIGR01318 216 RDISLDDLLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAM 295 (467)
T ss_pred CccCHHHHHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHH
Confidence 6555544445799999999998866789999999999988776532 11111100001 123579999999999999
Q ss_pred HHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccc
Q psy4525 166 DVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATL 245 (388)
Q Consensus 166 e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l 245 (388)
|+|..+. ..++++||+++|++....+....++.+
T Consensus 296 d~A~~a~--------------------~~Ga~~Vtvv~r~~~~~~~~~~~e~~~-------------------------- 329 (467)
T TIGR01318 296 DCVRTAI--------------------RLGAASVTCAYRRDEANMPGSRREVAN-------------------------- 329 (467)
T ss_pred HHHHHHH--------------------HcCCCeEEEEEecCcccCCCCHHHHHH--------------------------
Confidence 9998654 356678999999876544333222211
Q ss_pred cchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEcc---------Ccc---ccCCceeEEec
Q psy4525 246 ARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFAN---------QQA---LVTEDTELIPS 313 (388)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~---------~~~---~~~~~~~~l~~ 313 (388)
..++||++++++.++++..++++++.++++.. ++. ...++.++++|
T Consensus 330 ----------------------~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~ 387 (467)
T TIGR01318 330 ----------------------AREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPA 387 (467)
T ss_pred ----------------------HHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEEC
Confidence 11579999999999999865567787776531 110 12355678999
Q ss_pred ceEEEccccCCccCC----CCCcccCCCccccC
Q psy4525 314 GIAFRSIGYQSRCVD----SDIPFNEKSCTVIP 342 (388)
Q Consensus 314 D~Vi~a~G~~p~~~~----~~l~~~~~~gi~l~ 342 (388)
|.||+|+|++|+... .++.++..+.+.+|
T Consensus 388 D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd 420 (467)
T TIGR01318 388 DVVIMAFGFQPHAMPWLAGHGITLDSWGRIITG 420 (467)
T ss_pred CEEEECCcCCCCccccccccCccCCCCCCEEeC
Confidence 999999999998521 34555544455565
No 13
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.97 E-value=6.2e-29 Score=254.65 Aligned_cols=256 Identities=24% Similarity=0.342 Sum_probs=189.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
...++|+|||+||||+++|..|++ .|++|++||+.+.+||.+++++ |.+...+++.++..+.+.+.|++++.++.++
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~--~G~~Vtv~e~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~ 267 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLR--KGHDVTIFDANEQAGGMMRYGI-PRFRLPESVIDADIAPLRAMGAEFRFNTVFG 267 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCceeeecC-CCCCCCHHHHHHHHHHHHHcCCEEEeCCccc
Confidence 356899999999999999999999 8999999999999999999998 7777777777777788888899999888776
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHH
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARI 170 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~ 170 (388)
.+++.++....||+||+|||+.+.+.+++||.+.++++++.+++...... .....+++|+|||+|++|+|+|..
T Consensus 268 ~dv~~~~~~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~------~~~~~gk~VvVIGgG~~a~e~A~~ 341 (652)
T PRK12814 268 RDITLEELQKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALG------TALHPGKKVVVIGGGNTAIDAART 341 (652)
T ss_pred CccCHHHHHhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcC------CcccCCCeEEEECCCHHHHHHHHH
Confidence 66555544456999999999987567899999889999887776432211 123458999999999999999997
Q ss_pred hccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhh
Q psy4525 171 LLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRK 250 (388)
Q Consensus 171 L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 250 (388)
+. +.++++|++++|+....++....++.+
T Consensus 342 l~--------------------~~Ga~~Vtlv~r~~~~~mpa~~~ei~~------------------------------- 370 (652)
T PRK12814 342 AL--------------------RLGAESVTILYRRTREEMPANRAEIEE------------------------------- 370 (652)
T ss_pred HH--------------------HcCCCeEEEeeecCcccCCCCHHHHHH-------------------------------
Confidence 65 356678999999875433333222211
Q ss_pred HHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCC-ceeEEEEcc------Cc--cc-cCCceeEEecceEEEcc
Q psy4525 251 RLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNG-AITGINFAN------QQ--AL-VTEDTELIPSGIAFRSI 320 (388)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~-~v~~v~~~~------~~--~~-~~~~~~~l~~D~Vi~a~ 320 (388)
. .++||+++++..++++..++++ .+..+++.. ++ .+ ..++..++++|.||+|+
T Consensus 371 ----a-------------~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~Ai 433 (652)
T PRK12814 371 ----A-------------LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAI 433 (652)
T ss_pred ----H-------------HHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECC
Confidence 1 1468999999999999864322 123333321 11 11 13445689999999999
Q ss_pred ccCCccCC---CCCcccCCCccccCC
Q psy4525 321 GYQSRCVD---SDIPFNEKSCTVIPK 343 (388)
Q Consensus 321 G~~p~~~~---~~l~~~~~~gi~l~~ 343 (388)
|+.|+... .++.++..+.+.+|+
T Consensus 434 G~~p~~~ll~~~gl~~~~~G~I~vd~ 459 (652)
T PRK12814 434 GQQVDPPIAEAAGIGTSRNGTVKVDP 459 (652)
T ss_pred CCcCCcccccccCccccCCCcEeeCC
Confidence 99999742 356666555566664
No 14
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.97 E-value=1.2e-28 Score=252.40 Aligned_cols=260 Identities=23% Similarity=0.388 Sum_probs=194.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++|+|||+||||+++|..|++ .|++|++||+.+.+||+++||+ |.+...+++.....+.+...|++++.++.++.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~--~G~~Vtv~e~~~~~GG~l~~gi-p~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~ 385 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR--AGVQVDVFDRHPEIGGMLTFGI-PPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR 385 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--cCCcEEEEeCCCCCCCeeeccC-CcccCCHHHHHHHHHHHHHCCeEEEcCCccCC
Confidence 47899999999999999999999 8999999999999999999999 66667777777777888889999999998876
Q ss_pred EeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeeccccccccc----CCCCcccc-CcCCCCCeEEEEcCChHHHH
Q psy4525 92 DISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYN----GLPEDASL-DLSLDCEEATILGQGNVAMD 166 (388)
Q Consensus 92 ~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~----~~~~~~~~-~~~~~~~~vvVIGgG~sg~e 166 (388)
+++..+....||+|++|||+..++.+++||.+.++++++.+|+.... ........ .....+++|+|||+|++|+|
T Consensus 386 ~~~~~~l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d 465 (639)
T PRK12809 386 DITFSDLTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMD 465 (639)
T ss_pred cCCHHHHHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHH
Confidence 66665555689999999999876778999999999998877763211 11110000 11235799999999999999
Q ss_pred HHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhcccc
Q psy4525 167 VARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLA 246 (388)
Q Consensus 167 ~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 246 (388)
+|..+. +.++++||+++|++...++....++.+
T Consensus 466 ~a~~~~--------------------~~Ga~~Vt~v~rr~~~~~~~~~~e~~~--------------------------- 498 (639)
T PRK12809 466 CLRTSI--------------------RLNAASVTCAYRRDEVSMPGSRKEVVN--------------------------- 498 (639)
T ss_pred HHHHHH--------------------HcCCCeEEEeeecCcccCCCCHHHHHH---------------------------
Confidence 998543 367778999999875544433332211
Q ss_pred chhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEc---------cCcc---ccCCceeEEecc
Q psy4525 247 RPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFA---------NQQA---LVTEDTELIPSG 314 (388)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~---------~~~~---~~~~~~~~l~~D 314 (388)
..++||+++++..++++..+++++|.++++. +++. ...++..+++||
T Consensus 499 ---------------------a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD 557 (639)
T PRK12809 499 ---------------------AREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPAD 557 (639)
T ss_pred ---------------------HHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECC
Confidence 1157999999999999987666788877552 1210 124566789999
Q ss_pred eEEEccccCCccCC----CCCcccCCCccccC
Q psy4525 315 IAFRSIGYQSRCVD----SDIPFNEKSCTVIP 342 (388)
Q Consensus 315 ~Vi~a~G~~p~~~~----~~l~~~~~~gi~l~ 342 (388)
.||+|+|+.|+... .++.+++++.+.+|
T Consensus 558 ~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd 589 (639)
T PRK12809 558 VLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTG 589 (639)
T ss_pred EEEECcCCCCCccccccccCcccCCCCCEEeC
Confidence 99999999997521 23445543334444
No 15
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.96 E-value=8.1e-29 Score=257.03 Aligned_cols=253 Identities=24% Similarity=0.339 Sum_probs=185.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
.+.++|+||||||||++||..|++ .|++|+|||+.+.+||.+++++ |.+....++.....+++.+.|++++.++.+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar--~G~~VtV~Ek~~~~GG~lr~~I-P~~Rlp~evL~~die~l~~~GVe~~~gt~V- 612 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLAR--AGHPVTVFEREENAGGVVKNII-PQFRIPAELIQHDIEFVKAHGVKFEFGCSP- 612 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHH--cCCeEEEEecccccCcceeeec-ccccccHHHHHHHHHHHHHcCCEEEeCcee-
Confidence 457899999999999999999999 8999999999999999999987 888777777777777888889999998876
Q ss_pred EEeeeccccc-ccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHH
Q psy4525 91 QDISLGDLTN-AYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVAR 169 (388)
Q Consensus 91 ~~~~~~~~~~-~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~ 169 (388)
+++.++... .||+||||||+.+++.++++|.+ ++++++.+++..++... .....+++|+|||||++|+|+|.
T Consensus 613 -di~le~L~~~gYDaVILATGA~~~~~l~IpG~~-~gV~saldfL~~~k~~~-----~~~~~GKrVVVIGGGnVAmD~Ar 685 (1019)
T PRK09853 613 -DLTVEQLKNEGYDYVVVAIGADKNGGLKLEGGN-QNVIKALPFLEEYKNKG-----TALKLGKHVVVVGGGNTAMDAAR 685 (1019)
T ss_pred -EEEhhhheeccCCEEEECcCCCCCCCCCCCCcc-CCceehHHHHHHHhhhc-----ccccCCCEEEEECCChHHHHHHH
Confidence 344444433 59999999999876677888865 67888888775542111 12234899999999999999998
Q ss_pred HhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchh
Q psy4525 170 ILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPR 249 (388)
Q Consensus 170 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 249 (388)
.+. +..++++|++++|+.....+....++.+
T Consensus 686 ~a~-------------------RlgGakeVTLVyRr~~~~MPA~~eEle~------------------------------ 716 (1019)
T PRK09853 686 AAL-------------------RVPGVEKVTVVYRRTKQEMPAWREEYEE------------------------------ 716 (1019)
T ss_pred HHH-------------------hcCCCceEEEEEccCcccccccHHHHHH------------------------------
Confidence 654 1134568999999865333322222211
Q ss_pred hHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEc------cCc--cccCCceeEEecceEEEccc
Q psy4525 250 KRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFA------NQQ--ALVTEDTELIPSGIAFRSIG 321 (388)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~------~~~--~~~~~~~~~l~~D~Vi~a~G 321 (388)
.+ ++||+++++..+.++.. ++++...... +++ .+.++++.+++||.||+|+|
T Consensus 717 -----Al-------------eeGVe~~~~~~p~~I~~--dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG 776 (1019)
T PRK09853 717 -----AL-------------EDGVEFKELLNPESFDA--DGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIG 776 (1019)
T ss_pred -----HH-------------HcCCEEEeCCceEEEEc--CCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCC
Confidence 11 46899999999999964 3444322111 121 23456778999999999999
Q ss_pred cCCccCC---CCCcccCCCccccCC
Q psy4525 322 YQSRCVD---SDIPFNEKSCTVIPK 343 (388)
Q Consensus 322 ~~p~~~~---~~l~~~~~~gi~l~~ 343 (388)
.+|+... .+++++..+.+.+++
T Consensus 777 ~~Pntelle~~GL~ld~~G~I~VDe 801 (1019)
T PRK09853 777 EQVDTELLKANGIPLDKKGWPVVDA 801 (1019)
T ss_pred CcCChhHHHhcCccccCCCCEEeCC
Confidence 9998742 456666555566553
No 16
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.96 E-value=2.4e-28 Score=242.31 Aligned_cols=286 Identities=23% Similarity=0.314 Sum_probs=191.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
...++|+|||+||||+++|..|++ .|++|++||+.+.+||.+++++ |.+....++.....+++.+.|++++.++.+.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~--~G~~V~vie~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 217 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLAR--AGHKVTVFERADRIGGLLRYGI-PDFKLEKEVIDRRIELMEAEGIEFRTNVEVG 217 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHh--CCCcEEEEecCCCCCceeeecC-CcccCCHHHHHHHHHHHHhCCcEEEeCCEEC
Confidence 346899999999999999999999 8999999999999999999998 7666667777777778888999999998876
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCC--CCccccCcCCCCCeEEEEcCChHHHHHH
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGL--PEDASLDLSLDCEEATILGQGNVAMDVA 168 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~vvVIGgG~sg~e~a 168 (388)
.+++.......||+||+|||+..++.+++||.+.++|+++.+|+...... ...........+++|+|||+|++|+|+|
T Consensus 218 ~~~~~~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A 297 (471)
T PRK12810 218 KDITAEELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCV 297 (471)
T ss_pred CcCCHHHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHH
Confidence 55444444458999999999986568899999999999887776432110 0000001234589999999999999999
Q ss_pred HHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccch
Q psy4525 169 RILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARP 248 (388)
Q Consensus 169 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 248 (388)
..+. ..++++|+++.+....... . .... ..+..
T Consensus 298 ~~~~--------------------~~ga~~Vt~~~~~~~~~~~---~--------------~~~~----------~~~~~ 330 (471)
T PRK12810 298 GTAI--------------------RQGAKSVTQRDIMPMPPSR---R--------------NKNN----------PWPYW 330 (471)
T ss_pred HHHH--------------------HcCCCeEEEccccCCCccc---c--------------cccc----------CCccc
Confidence 8654 3566778855433211000 0 0000 00000
Q ss_pred -hhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEcc-----Ccc-ccCCceeEEecceEEEccc
Q psy4525 249 -RKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFAN-----QQA-LVTEDTELIPSGIAFRSIG 321 (388)
Q Consensus 249 -~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~-----~~~-~~~~~~~~l~~D~Vi~a~G 321 (388)
.......+ .+.||+++++..++++..+ ++++.++++.. ++. ...++.++++||.||+|+|
T Consensus 331 ~~~~~~~~~------------~~~GV~i~~~~~~~~i~~~-~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G 397 (471)
T PRK12810 331 PMKLEVSNA------------HEEGVEREFNVQTKEFEGE-NGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMG 397 (471)
T ss_pred chHHHHHHH------------HHcCCeEEeccCceEEEcc-CCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcC
Confidence 00001111 2579999999999999753 57888776542 110 1234557899999999999
Q ss_pred cCCcc--CC--CCCcccCCCccccCCCCCCeecchhhHHhHH
Q psy4525 322 YQSRC--VD--SDIPFNEKSCTVIPKEGVPVVTWEGWKAIDK 359 (388)
Q Consensus 322 ~~p~~--~~--~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~ 359 (388)
++|+. +. .++.++.++.+.+|+.....-..+.|...|+
T Consensus 398 ~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~ 439 (471)
T PRK12810 398 FTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDM 439 (471)
T ss_pred cCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEcccc
Confidence 99984 22 3455555455556522222112345555554
No 17
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.96 E-value=5.1e-27 Score=224.75 Aligned_cols=278 Identities=22% Similarity=0.251 Sum_probs=182.3
Q ss_pred ccCCCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceE
Q psy4525 8 TISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNI 87 (388)
Q Consensus 8 ~~~~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~ 87 (388)
+.+..+++|+|||+|++|+++|..|++ .|.+|++||+.+.+||.+.++..+.....+.+.... +.+.+.+++++.++
T Consensus 13 ~~~~~~~~VvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~-~~l~~~~i~~~~~~ 89 (352)
T PRK12770 13 KPPPTGKKVAIIGAGPAGLAAAGYLAC--LGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGV-KELEEAGVVFHTRT 89 (352)
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHH-HHHHhCCeEEecCc
Confidence 344567899999999999999999999 899999999999999988776533222223333333 34445589988887
Q ss_pred EEEEE---------------eeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCc-ccc--CcC
Q psy4525 88 CLGQD---------------ISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPED-ASL--DLS 149 (388)
Q Consensus 88 ~v~~~---------------~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~-~~~--~~~ 149 (388)
.+... +..++....||+||||||+..++.+++||.+.++++++.++...+...... ... ...
T Consensus 90 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (352)
T PRK12770 90 KVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPP 169 (352)
T ss_pred EEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHHHHHhhhccccccccccccc
Confidence 66321 011111237999999999954467889998888898876655332211110 000 112
Q ss_pred CCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEE
Q psy4525 150 LDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTV 229 (388)
Q Consensus 150 ~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~ 229 (388)
..+++++|||+|++|+|+|..|. ..+.++|+++.|++.+..+...
T Consensus 170 ~~g~~vvViG~G~~g~e~A~~l~--------------------~~g~~~Vtvi~~~~~~~~~~~~--------------- 214 (352)
T PRK12770 170 VEGKKVVVVGAGLTAVDAALEAV--------------------LLGAEKVYLAYRRTINEAPAGK--------------- 214 (352)
T ss_pred cCCCEEEEECCCHHHHHHHHHHH--------------------HcCCCeEEEEeecchhhCCCCH---------------
Confidence 34789999999999999999775 2455569999987543221111
Q ss_pred ecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCcc-------
Q psy4525 230 FRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQA------- 302 (388)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~------- 302 (388)
+....+ ..+||+++++..++++.. ++++..+++.+...
T Consensus 215 ---------------------~~~~~l------------~~~gi~i~~~~~v~~i~~--~~~~~~v~~~~~~~~~~~~~~ 259 (352)
T PRK12770 215 ---------------------YEIERL------------IARGVEFLELVTPVRIIG--EGRVEGVELAKMRLGEPDESG 259 (352)
T ss_pred ---------------------HHHHHH------------HHcCCEEeeccCceeeec--CCcEeEEEEEEEEecCcCccc
Confidence 111112 257999999999999974 34566666542210
Q ss_pred -----ccCCceeEEecceEEEccccCCccCC----CCCcccCCCccccCCCCCCeecchhhHHhHH
Q psy4525 303 -----LVTEDTELIPSGIAFRSIGYQSRCVD----SDIPFNEKSCTVIPKEGVPVVTWEGWKAIDK 359 (388)
Q Consensus 303 -----~~~~~~~~l~~D~Vi~a~G~~p~~~~----~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~ 359 (388)
..++++++++||.||+|+|++|++.. .++.++..+.+.+|+.... -..+.|...|+
T Consensus 260 ~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~~~t-~~~~vyaiGD~ 324 (352)
T PRK12770 260 RPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEKHMT-SREGVFAAGDV 324 (352)
T ss_pred CcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCCCccc-CCCCEEEEccc
Confidence 12456678999999999999998742 3455555555666665432 12355555554
No 18
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.95 E-value=8.2e-27 Score=243.30 Aligned_cols=251 Identities=23% Similarity=0.339 Sum_probs=178.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++|+||||||||++||..|++ .|++|+|||+.+.+||.+++++ |.+....+...+..+++.+.|++++.++..
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr--~G~~VTV~Ek~~~lGG~l~~~I-P~~rlp~e~l~~~ie~l~~~GVe~~~g~~~-- 610 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR--AGHPVTVFEKKEKPGGVVKNII-PEFRISAESIQKDIELVKFHGVEFKYGCSP-- 610 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--CCCeEEEEecccccCceeeecc-cccCCCHHHHHHHHHHHHhcCcEEEEeccc--
Confidence 46899999999999999999999 8999999999999999999887 777666777777777777889999887432
Q ss_pred Eeeecccc-cccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHH
Q psy4525 92 DISLGDLT-NAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARI 170 (388)
Q Consensus 92 ~~~~~~~~-~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~ 170 (388)
++++.+.. ..||+||||||+.++++++++|.. ++++.+.+++..+.... .....+++|+|||||++|+|+|..
T Consensus 611 d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~-~~v~~avefL~~~~~~~-----~~~~~GK~VVVIGGGnvAmD~Ar~ 684 (1012)
T TIGR03315 611 DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGG-ERVLKSLEFLRAFKEGP-----TINPLGKHVVVVGGGNTAMDAARA 684 (1012)
T ss_pred ceEhhhhhcccccEEEECCCCCCCCCCCcCCCC-cceeeHHHHHHHhhccc-----cccccCCeEEEECCCHHHHHHHHH
Confidence 23333333 369999999999876677888854 57777777775433211 112348999999999999999986
Q ss_pred hccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhh
Q psy4525 171 LLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRK 250 (388)
Q Consensus 171 L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 250 (388)
+. +..++++|++++|+.....+....++.+
T Consensus 685 a~-------------------Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~~------------------------------- 714 (1012)
T TIGR03315 685 AL-------------------RVPGVEKVTVVYRRTKRYMPASREELEE------------------------------- 714 (1012)
T ss_pred HH-------------------HhCCCceEEEEEccCccccccCHHHHHH-------------------------------
Confidence 54 1136678999999864333322222211
Q ss_pred HHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEc------cCc--cccCCceeEEecceEEEcccc
Q psy4525 251 RLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFA------NQQ--ALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~------~~~--~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
.+ +.||+++++..+.++. ++.+...... +++ .+.+++..+++||.||+|+|+
T Consensus 715 ----al-------------eeGVe~~~~~~p~~I~---~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~ 774 (1012)
T TIGR03315 715 ----AL-------------EDGVDFKELLSPESFE---DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGE 774 (1012)
T ss_pred ----HH-------------HcCCEEEeCCceEEEE---CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCC
Confidence 11 4689999999998887 2333322111 121 123466678999999999999
Q ss_pred CCccCC---CCCcccCCCccccCC
Q psy4525 323 QSRCVD---SDIPFNEKSCTVIPK 343 (388)
Q Consensus 323 ~p~~~~---~~l~~~~~~gi~l~~ 343 (388)
+|+... .+++++..+.+.+|.
T Consensus 775 ~Pnt~lle~~GL~ld~~G~I~VD~ 798 (1012)
T TIGR03315 775 QVDTDLLQKNGIPLDEYGWPVVNQ 798 (1012)
T ss_pred cCChHHHHhcCcccCCCCCEEeCC
Confidence 998732 456666555566664
No 19
>PRK06370 mercuric reductase; Validated
Probab=99.95 E-value=1.7e-26 Score=229.03 Aligned_cols=246 Identities=14% Similarity=0.183 Sum_probs=166.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCc---------------------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHP--------------------------- 63 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~--------------------------- 63 (388)
..+||+|||+||||++||..+++ .|.+|+|||+. .+||.| +.||.|.+.
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~--~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 80 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAG--LGMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSV 80 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--CCCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCcc
Confidence 45899999999999999999999 89999999987 566665 667765421
Q ss_pred chhHHH-----------HHHHHhhcCC-CcEEEceEEEE---EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCee
Q psy4525 64 EVKNVI-----------NTFTKTGDNP-RVNFYGNICLG---QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNII 128 (388)
Q Consensus 64 ~~~~~~-----------~~~~~~~~~~-~i~~~~~~~v~---~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~ 128 (388)
....+. ..+..++++. +++++.++.+. ..+++++....||+||||||+.+ +.|++||.+..+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v~~~~~~~d~lViATGs~p-~~p~i~G~~~~~~~ 159 (463)
T PRK06370 81 DFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRVGGETLRAKRIFINTGARA-AIPPIPGLDEVGYL 159 (463)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEECcEEEEeCEEEEcCCCCC-CCCCCCCCCcCceE
Confidence 111111 2334455666 89988776542 12344333458999999999988 58889998766676
Q ss_pred ecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcc
Q psy4525 129 SARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGAL 208 (388)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~ 208 (388)
+..++.. ....+++|+|||+|++|+|+|..|. +.+ .+|+++.|.+.+
T Consensus 160 ~~~~~~~------------~~~~~~~vvVIGgG~~g~E~A~~l~--------------------~~G-~~Vtli~~~~~~ 206 (463)
T PRK06370 160 TNETIFS------------LDELPEHLVIIGGGYIGLEFAQMFR--------------------RFG-SEVTVIERGPRL 206 (463)
T ss_pred cchHhhC------------ccccCCEEEEECCCHHHHHHHHHHH--------------------HcC-CeEEEEEcCCCC
Confidence 6655431 1123689999999999999999776 233 579999998765
Q ss_pred cccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCC
Q psy4525 209 QVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLND 288 (388)
Q Consensus 209 ~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~ 288 (388)
...+. +++. +.+.+.+ .+.||++++++.+.++..++
T Consensus 207 l~~~~-~~~~-------------------------------~~l~~~l------------~~~GV~i~~~~~V~~i~~~~ 242 (463)
T PRK06370 207 LPRED-EDVA-------------------------------AAVREIL------------EREGIDVRLNAECIRVERDG 242 (463)
T ss_pred CcccC-HHHH-------------------------------HHHHHHH------------HhCCCEEEeCCEEEEEEEcC
Confidence 43321 1111 1122222 26799999999999998643
Q ss_pred CCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 289 NGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 289 ~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
++. .+.+. ..+++.++++|.||+|+|++||+.. .++.+++++.+.+|++.
T Consensus 243 ~~~--~v~~~-----~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l 297 (463)
T PRK06370 243 DGI--AVGLD-----CNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQL 297 (463)
T ss_pred CEE--EEEEE-----eCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCC
Confidence 232 22221 1234567999999999999999751 23455555557777643
No 20
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.95 E-value=1.4e-26 Score=224.65 Aligned_cols=249 Identities=16% Similarity=0.213 Sum_probs=169.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcc-------------------------
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPE------------------------- 64 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~------------------------- 64 (388)
...+|++|||+||||..+|..+++ .|.++.++|+...+||.| ++||.|.+..
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~--~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~ 79 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQ--LGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPK 79 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHh--CCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCC
Confidence 346899999999999999999999 898899999998889888 8899876421
Q ss_pred --hhHHHH-----------HHHHhhcCCCcEEEceEE-EE--EEeeecc---cccccCEEEEeeCCCCCCCCCCCCCCCC
Q psy4525 65 --VKNVIN-----------TFTKTGDNPRVNFYGNIC-LG--QDISLGD---LTNAYHAVVLTYGADNDKKLNIPGEDGK 125 (388)
Q Consensus 65 --~~~~~~-----------~~~~~~~~~~i~~~~~~~-v~--~~~~~~~---~~~~yd~lvlAtG~~~~~~~~i~g~~~~ 125 (388)
.+++.. .....++..+++++.+.. +. ..+.+.. ....++++|||||++| +.|++++.+..
T Consensus 80 id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p-~~~~~~~~~~~ 158 (454)
T COG1249 80 IDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRP-RIPPGPGIDGA 158 (454)
T ss_pred cCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCC-cCCCCCCCCCC
Confidence 111111 122344556777765443 21 2344433 2347999999999999 58888887766
Q ss_pred CeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeec
Q psy4525 126 NIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRR 205 (388)
Q Consensus 126 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~ 205 (388)
.+++..+.+.. ..-+++++|||||.+|+|+|..++ +.| .+||++.|.
T Consensus 159 ~~~~s~~~l~~------------~~lP~~lvIiGgG~IGlE~a~~~~--------------------~LG-~~VTiie~~ 205 (454)
T COG1249 159 RILDSSDALFL------------LELPKSLVIVGGGYIGLEFASVFA--------------------ALG-SKVTVVERG 205 (454)
T ss_pred eEEechhhccc------------ccCCCEEEEECCCHHHHHHHHHHH--------------------HcC-CcEEEEecC
Confidence 67766664421 123799999999999999999776 234 479999999
Q ss_pred CcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeee
Q psy4525 206 GALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFK 285 (388)
Q Consensus 206 ~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~ 285 (388)
+.+...+. +++++ .+...|. +.|+.+++++.++++.
T Consensus 206 ~~iLp~~D-~ei~~-------------------------------~~~~~l~------------~~gv~i~~~~~v~~~~ 241 (454)
T COG1249 206 DRILPGED-PEISK-------------------------------ELTKQLE------------KGGVKILLNTKVTAVE 241 (454)
T ss_pred CCCCCcCC-HHHHH-------------------------------HHHHHHH------------hCCeEEEccceEEEEE
Confidence 98755433 22221 1222222 5789999999999998
Q ss_pred eCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCCCCCcccCCCccccCCCCCCeec
Q psy4525 286 LNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTVIPKEGVPVVT 350 (388)
Q Consensus 286 ~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~~~l~~~~~~gi~l~~~~~~~~~ 350 (388)
..+++ ..+.+++ +++.++++|.|++|+|.+||+.. |.++ +-|+.++++|...+|
T Consensus 242 ~~~~~--v~v~~~~------g~~~~~~ad~vLvAiGR~Pn~~~--LgLe-~~Gv~~~~rg~I~VD 295 (454)
T COG1249 242 KKDDG--VLVTLED------GEGGTIEADAVLVAIGRKPNTDG--LGLE-NAGVELDDRGFIKVD 295 (454)
T ss_pred ecCCe--EEEEEec------CCCCEEEeeEEEEccCCccCCCC--CChh-hcCceECCCCCEEeC
Confidence 65433 4444432 22227999999999999999952 3332 234444444444444
No 21
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.95 E-value=1.6e-26 Score=229.45 Aligned_cols=275 Identities=21% Similarity=0.268 Sum_probs=183.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++|+|||+||||+++|..|++ .|++|+|||+.+.+||+++|++ |.+....++.....+++++.|++++.++.++.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~--~g~~V~v~e~~~~~gG~l~~gi-p~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~ 218 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR--AGHTVTVFEREDRCGGLLMYGI-PNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV 218 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCCCceeeccC-CCccCCHHHHHHHHHHHHhCCCEEECCCEeCC
Confidence 45899999999999999999999 8999999999999999999998 76666666777777788889999999988765
Q ss_pred EeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCC---Ccccc-CcCCCCCeEEEEcCChHHHHH
Q psy4525 92 DISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLP---EDASL-DLSLDCEEATILGQGNVAMDV 167 (388)
Q Consensus 92 ~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~---~~~~~-~~~~~~~~vvVIGgG~sg~e~ 167 (388)
+++.+.....||+||+|||+..++.+++||.+.++|+++.+|+....... ..... .....+++|+|||+|++|+|+
T Consensus 219 ~~~~~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~ 298 (485)
T TIGR01317 219 DISADELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADC 298 (485)
T ss_pred ccCHHHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHH
Confidence 54443334579999999999855788999999999998877764322110 00000 112457999999999999999
Q ss_pred HHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccc
Q psy4525 168 ARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLAR 247 (388)
Q Consensus 168 a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 247 (388)
|..+. +.++++|+++++.+.........+ .+|.. ++
T Consensus 299 a~~a~--------------------~~ga~~V~vv~~~~~~~~~~~~~~-----~~~~~-------------------~~ 334 (485)
T TIGR01317 299 VGTSL--------------------RHGAASVHQFEIMPKPPEARAKDN-----PWPEW-------------------PR 334 (485)
T ss_pred HHHHH--------------------HcCCCEEEEEEecCCChhhccccc-----CCCcc-------------------ch
Confidence 87543 356678999987754321100000 00000 00
Q ss_pred hhhHHHHHHHhhCCCCCCCCCCceeEE-EEecCcceeeeeCCCCceeEEEEc--------cCc---cccCCceeEEecce
Q psy4525 248 PRKRLTELILKTSNPDESKSNCSKYFR-PIFLRSPTEFKLNDNGAITGINFA--------NQQ---ALVTEDTELIPSGI 315 (388)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~gv~-~~~~~~~~~i~~~~~~~v~~v~~~--------~~~---~~~~~~~~~l~~D~ 315 (388)
. .++...+... ....|+. ++++..+.++.+++++++.++++. +++ ....++.++++||.
T Consensus 335 ~-~e~~~a~~e~--------~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~ 405 (485)
T TIGR01317 335 V-YRVDYAHEEA--------AAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADL 405 (485)
T ss_pred h-hhhHHHHHhh--------hhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCE
Confidence 0 0000001100 1124554 467888999987555788877642 222 12245567899999
Q ss_pred EEEccccC-CccCC---CCCcccCCCccccC
Q psy4525 316 AFRSIGYQ-SRCVD---SDIPFNEKSCTVIP 342 (388)
Q Consensus 316 Vi~a~G~~-p~~~~---~~l~~~~~~gi~l~ 342 (388)
||+|+|+. |+... .++.++.++.+.++
T Consensus 406 Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~ 436 (485)
T TIGR01317 406 VLLAMGFVGPEQILLDDFGVKKTRRGNISAG 436 (485)
T ss_pred EEEccCcCCCccccccccCcccCCCCCEEec
Confidence 99999996 76531 34555544334343
No 22
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.95 E-value=4.4e-26 Score=224.80 Aligned_cols=242 Identities=17% Similarity=0.201 Sum_probs=162.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCc---------------------------c
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHP---------------------------E 64 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~---------------------------~ 64 (388)
.+||+||||||||++||..+++ .|.+|+|||+. .+||.| ++||.|... .
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~--~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAE--HGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFN 78 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccC
Confidence 4899999999999999999999 89999999996 688876 668877531 0
Q ss_pred hh-----------HHHHHHHHhhcCCCcEEEceEEEEE---EeeecccccccCEEEEeeCCCCCCCC-CCCCCCCCCeee
Q psy4525 65 VK-----------NVINTFTKTGDNPRVNFYGNICLGQ---DISLGDLTNAYHAVVLTYGADNDKKL-NIPGEDGKNIIS 129 (388)
Q Consensus 65 ~~-----------~~~~~~~~~~~~~~i~~~~~~~v~~---~~~~~~~~~~yd~lvlAtG~~~~~~~-~i~g~~~~~v~~ 129 (388)
.. .+.+.+...+++.+++++.++.... .+.++.....||+||||||+.+ +.| ++||.+. .++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~~~~~~d~vIiAtGs~p-~~p~~i~g~~~--~~~ 155 (450)
T TIGR01421 79 WPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEVNGRDYTAPHILIATGGKP-SFPENIPGAEL--GTD 155 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCCCC-CCCCCCCCCce--eEc
Confidence 11 1122244456667899887765321 2333333458999999999998 456 7887641 222
Q ss_pred cccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccc
Q psy4525 130 ARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQ 209 (388)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~ 209 (388)
..++.. ....+++++|||||++|+|+|..|+ ..+ .+||++.|.+.+.
T Consensus 156 ~~~~~~------------~~~~~~~vvIIGgG~iG~E~A~~l~--------------------~~g-~~Vtli~~~~~il 202 (450)
T TIGR01421 156 SDGFFA------------LEELPKRVVIVGAGYIAVELAGVLH--------------------GLG-SETHLVIRHERVL 202 (450)
T ss_pred HHHhhC------------ccccCCeEEEECCCHHHHHHHHHHH--------------------HcC-CcEEEEecCCCCC
Confidence 223221 1113689999999999999999876 223 5799999987765
Q ss_pred ccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCC
Q psy4525 210 VAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDN 289 (388)
Q Consensus 210 ~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~ 289 (388)
..+. ++++ +.+.+.+. ..||++++++.++++..+.+
T Consensus 203 ~~~d-~~~~-------------------------------~~~~~~l~------------~~gI~i~~~~~v~~i~~~~~ 238 (450)
T TIGR01421 203 RSFD-SMIS-------------------------------ETITEEYE------------KEGINVHKLSKPVKVEKTVE 238 (450)
T ss_pred cccC-HHHH-------------------------------HHHHHHHH------------HcCCEEEcCCEEEEEEEeCC
Confidence 3332 2222 12222222 67999999999999986433
Q ss_pred CceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 290 GAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 290 ~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
+. ..+.+. +..+.++||.||+|+|++||+.. .++.+++++.+.+|+..
T Consensus 239 ~~-~~v~~~-------~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~ 291 (450)
T TIGR01421 239 GK-LVIHFE-------DGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQ 291 (450)
T ss_pred ce-EEEEEC-------CCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCC
Confidence 32 233331 11257999999999999999842 34566665557776543
No 23
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.95 E-value=2.7e-26 Score=235.28 Aligned_cols=265 Identities=17% Similarity=0.171 Sum_probs=180.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC----------------------------CCCCceeeCCCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP----------------------------VPFGLVRYGVAPDH 62 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~----------------------------~~gg~~~~g~~p~~ 62 (388)
.++++|+|||+||||++||.+|++ .|++|++||+.+ .+||+..||+ | +
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~--~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGI-p-~ 456 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLR--SGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGI-T-V 456 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHh--CCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCc-c-c
Confidence 467899999999999999999999 899999999752 2788999999 5 4
Q ss_pred cchhHHHHHHHHhhcC-CCcEEEceEEEEEEeeecccc-cccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCC
Q psy4525 63 PEVKNVINTFTKTGDN-PRVNFYGNICLGQDISLGDLT-NAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGL 140 (388)
Q Consensus 63 ~~~~~~~~~~~~~~~~-~~i~~~~~~~v~~~~~~~~~~-~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~ 140 (388)
...++..+.....+.. .++.++.++.++.+++.++.. ..||+|+||||+..++.+++||.+.++|+++.+|+...+..
T Consensus 457 R~~k~~l~~i~~il~~g~~v~~~~gv~lG~dit~edl~~~gyDAV~IATGA~kpr~L~IPGeda~GV~sA~DfL~~l~~~ 536 (1028)
T PRK06567 457 RWDKNNLDILRLILERNNNFKYYDGVALDFNITKEQAFDLGFDHIAFCIGAGQPKVLDIENFEAKGVKTASDFLMTLQSG 536 (1028)
T ss_pred cchHHHHHHHHHHHhcCCceEEECCeEECccCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCccCCCeEEHHHHHHHHhhc
Confidence 4455555554444443 367888899998888887754 57999999999964478999999999999999988654321
Q ss_pred CCcc--ccCcCCCCCeEEEEcCChHHHHHHHHhccC-Cccc-------c-------cccCchh---------------HH
Q psy4525 141 PEDA--SLDLSLDCEEATILGQGNVAMDVARILLSP-VDQL-------K-------STDITEH---------------SL 188 (388)
Q Consensus 141 ~~~~--~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~-~~~~-------~-------~~~~~~~---------------~~ 188 (388)
.... .......+++|+|||||++|+|+|.....+ ...+ . ..++... ..
T Consensus 537 ~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g~~~~~~~v 616 (1028)
T PRK06567 537 GAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFKEAKNNEEL 616 (1028)
T ss_pred ccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhcchhccchh
Confidence 1110 001112368999999999999999843320 0000 0 0000000 00
Q ss_pred HhhhcCCCcEEEEEeecCcccccCC---HHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCC
Q psy4525 189 EKLSTSRIKSVNLVGRRGALQVAFT---IKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDES 265 (388)
Q Consensus 189 ~~~~~~~~~~V~~i~r~~~~~~~~~---~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 265 (388)
..+.+.... |++++|+..-.+|-+ ..|+. .
T Consensus 617 ~~l~~~~G~-VtIvYRr~~~empA~~~~~eEv~-----------------------------------~----------- 649 (1028)
T PRK06567 617 RKVFNKLGG-ATVYYRGRLQDSPAYKLNHEELI-----------------------------------Y----------- 649 (1028)
T ss_pred hhhhccCCc-eEEEecCChhhCCCCCCCHHHHH-----------------------------------H-----------
Confidence 001111222 889999876554432 11211 1
Q ss_pred CCCCceeEEEEecCcceeeeeCCCCceeEEEEccCc---------ccc-------------CCceeEEecceEEEccccC
Q psy4525 266 KSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQ---------ALV-------------TEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 266 ~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~---------~~~-------------~~~~~~l~~D~Vi~a~G~~ 323 (388)
..++||.|+++..|.++..++.|++.++++..-. ... .+...+++||.||+|+|..
T Consensus 650 --A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~ 727 (1028)
T PRK06567 650 --ALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIE 727 (1028)
T ss_pred --HHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccC
Confidence 1268999999999999988767899988876211 000 1144789999999999999
Q ss_pred CccCC
Q psy4525 324 SRCVD 328 (388)
Q Consensus 324 p~~~~ 328 (388)
||+..
T Consensus 728 ~~~~~ 732 (1028)
T PRK06567 728 NNTQF 732 (1028)
T ss_pred Ccccc
Confidence 98753
No 24
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.94 E-value=9.7e-26 Score=222.23 Aligned_cols=242 Identities=16% Similarity=0.192 Sum_probs=164.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC-CCCce-eeCCCCCCcc---------hhHHH-----------H
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV-PFGLV-RYGVAPDHPE---------VKNVI-----------N 70 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~-~gg~~-~~g~~p~~~~---------~~~~~-----------~ 70 (388)
.+||+||||||||++||..+++ .|.+|+|||+.+. +||.+ +.||.|.+.. ..++. .
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~--~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLAS--AGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRG 80 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHh--CCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999 8999999999864 68876 6787776641 12221 1
Q ss_pred HHHHhhcCCCcEEEceEEEE---EEeeec--c--cccccCEEEEeeCCCCCCCCCCCCC-CCCCeeecccccccccCCCC
Q psy4525 71 TFTKTGDNPRVNFYGNICLG---QDISLG--D--LTNAYHAVVLTYGADNDKKLNIPGE-DGKNIISARSFVGWYNGLPE 142 (388)
Q Consensus 71 ~~~~~~~~~~i~~~~~~~v~---~~~~~~--~--~~~~yd~lvlAtG~~~~~~~~i~g~-~~~~v~~~~~~~~~~~~~~~ 142 (388)
...+.+.+.+++++.+.... ..+.+. + ....||+||||||+.+ +.|++||. +.++++++.++...
T Consensus 81 ~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~-~~p~i~G~~~~~~v~~~~~~~~~------ 153 (438)
T PRK07251 81 KNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVS-NVLPIPGLADSKHVYDSTGIQSL------ 153 (438)
T ss_pred HHHHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCC-CCCCCCCcCCCCcEEchHHHhcc------
Confidence 22345566788888665321 122222 1 1248999999999998 57889986 35567766655421
Q ss_pred ccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhc
Q psy4525 143 DASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTK 222 (388)
Q Consensus 143 ~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~ 222 (388)
...+++|+|||+|.+|+|+|..|+ +.+ .+|+++.|.+.+...+ +++++
T Consensus 154 ------~~~~~~vvIIGgG~~g~e~A~~l~--------------------~~g-~~Vtli~~~~~~l~~~-~~~~~---- 201 (438)
T PRK07251 154 ------ETLPERLGIIGGGNIGLEFAGLYN--------------------KLG-SKVTVLDAASTILPRE-EPSVA---- 201 (438)
T ss_pred ------hhcCCeEEEECCCHHHHHHHHHHH--------------------HcC-CeEEEEecCCccCCCC-CHHHH----
Confidence 123689999999999999999775 233 5799999987654332 12221
Q ss_pred CCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCcc
Q psy4525 223 LPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQA 302 (388)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~ 302 (388)
+.+.+.+ .+.||++++++.++++..++ +.+ .+
T Consensus 202 ---------------------------~~~~~~l------------~~~GI~i~~~~~V~~i~~~~-~~v-~v------- 233 (438)
T PRK07251 202 ---------------------------ALAKQYM------------EEDGITFLLNAHTTEVKNDG-DQV-LV------- 233 (438)
T ss_pred ---------------------------HHHHHHH------------HHcCCEEEcCCEEEEEEecC-CEE-EE-------
Confidence 1111222 25799999999999997532 222 11
Q ss_pred ccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 303 LVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 303 ~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
..+++++++|.||+|+|++|+... .++.++.++.+.+|+..
T Consensus 234 --~~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~ 279 (438)
T PRK07251 234 --VTEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYC 279 (438)
T ss_pred --EECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCc
Confidence 123457999999999999999742 23445555557777643
No 25
>PRK13984 putative oxidoreductase; Provisional
Probab=99.94 E-value=5.3e-26 Score=232.44 Aligned_cols=266 Identities=23% Similarity=0.310 Sum_probs=185.6
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
.+.++|+|||+||||+++|..|++ .|++|++||+.+.+||.+++++ |.+...+++.....+.+++.|++++.++.++
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~--~G~~v~vie~~~~~gG~~~~~i-~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 357 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLAT--MGYEVTVYESLSKPGGVMRYGI-PSYRLPDEALDKDIAFIEALGVKIHLNTRVG 357 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCceEeecC-CcccCCHHHHHHHHHHHHHCCcEEECCCEeC
Confidence 457899999999999999999999 8999999999999999999998 7666667777776777888999999998886
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHH
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARI 170 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~ 170 (388)
.+++.+.....||+||+|||+..++.+++||.+.++++++.+++...+...... ......+++|+|||||++|+|+|..
T Consensus 358 ~~~~~~~~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~~-~~~~~~~k~VvVIGGG~~g~e~A~~ 436 (604)
T PRK13984 358 KDIPLEELREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRGE-GPKPKIPRSLVVIGGGNVAMDIARS 436 (604)
T ss_pred CcCCHHHHHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhccC-CCcCCCCCcEEEECCchHHHHHHHH
Confidence 655544444589999999999876788999998899998888775433211000 0111236899999999999999997
Q ss_pred hccCCcccccccCchhHHHhhhcCCCcEEEEEeec-CcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchh
Q psy4525 171 LLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRR-GALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPR 249 (388)
Q Consensus 171 L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~-~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 249 (388)
|++ ++. ...+..+|+++... .....+....+
T Consensus 437 l~r--------------~~~-~~~g~~~V~v~~~~r~~~~~~~~~~e--------------------------------- 468 (604)
T PRK13984 437 MAR--------------LQK-MEYGEVNVKVTSLERTFEEMPADMEE--------------------------------- 468 (604)
T ss_pred HHh--------------ccc-cccCceEEEEeccccCcccCCCCHHH---------------------------------
Confidence 751 000 01233568886432 11111111111
Q ss_pred hHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEcc--------Ccc---ccCCceeEEecceEEE
Q psy4525 250 KRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFAN--------QQA---LVTEDTELIPSGIAFR 318 (388)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~--------~~~---~~~~~~~~l~~D~Vi~ 318 (388)
+... .+.||+++++..++++.. +++++.++++.. ++. ..+++.+++++|.||+
T Consensus 469 --~~~~-------------~~~GV~i~~~~~~~~i~~-~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~ 532 (604)
T PRK13984 469 --IEEG-------------LEEGVVIYPGWGPMEVVI-ENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVE 532 (604)
T ss_pred --HHHH-------------HHcCCEEEeCCCCEEEEc-cCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEE
Confidence 1111 147999999999999875 357888776642 110 1234567899999999
Q ss_pred ccccCCccCC------CCCcccCCCccccCCCC
Q psy4525 319 SIGYQSRCVD------SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 319 a~G~~p~~~~------~~l~~~~~~gi~l~~~~ 345 (388)
|+|++||+.. .++.+ .++++.+|+..
T Consensus 533 aiG~~p~~~~l~~~~~~~l~~-~~G~i~vd~~~ 564 (604)
T PRK13984 533 AIGQAPDYSYLPEELKSKLEF-VRGRILTNEYG 564 (604)
T ss_pred eeCCCCChhhhhhhhccCccc-cCCeEEeCCCC
Confidence 9999998632 12333 23446666543
No 26
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.94 E-value=2e-25 Score=221.44 Aligned_cols=260 Identities=14% Similarity=0.168 Sum_probs=168.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcc--------------------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPE-------------------------- 64 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~-------------------------- 64 (388)
..+||+||||||||+++|..+++ .|.+|+|+|+.+.+||.| ++||.|....
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 80 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAAD--LGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKID 80 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcC
Confidence 45899999999999999999999 899999999987889876 6787776321
Q ss_pred hhHHHHH-----------HHHhhcCCCcEEEceEEEEE---E--eeeccc---ccccCEEEEeeCCCCCCCCCCCCCCCC
Q psy4525 65 VKNVINT-----------FTKTGDNPRVNFYGNICLGQ---D--ISLGDL---TNAYHAVVLTYGADNDKKLNIPGEDGK 125 (388)
Q Consensus 65 ~~~~~~~-----------~~~~~~~~~i~~~~~~~v~~---~--~~~~~~---~~~yd~lvlAtG~~~~~~~~i~g~~~~ 125 (388)
...+.++ +...+++.+++++.+...-. . ++..+. ...||+||||||+.+..+|.+++ +.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~-~~~ 159 (471)
T PRK06467 81 IDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPH-DDP 159 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCC-CCC
Confidence 1111111 22345667898887654311 1 222222 34899999999998842444554 334
Q ss_pred CeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeec
Q psy4525 126 NIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRR 205 (388)
Q Consensus 126 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~ 205 (388)
++++..+... ....+++++|||+|++|+|+|..|. ..+ .+||++.+.
T Consensus 160 ~v~~~~~~~~------------~~~~~~~vvIiGgG~iG~E~A~~l~--------------------~~G-~~Vtlv~~~ 206 (471)
T PRK06467 160 RIWDSTDALE------------LKEVPKRLLVMGGGIIGLEMGTVYH--------------------RLG-SEVDVVEMF 206 (471)
T ss_pred cEEChHHhhc------------cccCCCeEEEECCCHHHHHHHHHHH--------------------HcC-CCEEEEecC
Confidence 5655544331 1123589999999999999999775 233 579999998
Q ss_pred CcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeee
Q psy4525 206 GALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFK 285 (388)
Q Consensus 206 ~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~ 285 (388)
+.+...+. ++++ +.+.+.+ .++ +.++++..++++.
T Consensus 207 ~~il~~~d-~~~~-------------------------------~~~~~~l------------~~~-v~i~~~~~v~~i~ 241 (471)
T PRK06467 207 DQVIPAAD-KDIV-------------------------------KVFTKRI------------KKQ-FNIMLETKVTAVE 241 (471)
T ss_pred CCCCCcCC-HHHH-------------------------------HHHHHHH------------hhc-eEEEcCCEEEEEE
Confidence 77644322 2221 1111222 145 8999999999987
Q ss_pred eCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCCCCeecchhhHHhHH
Q psy4525 286 LNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEGVPVVTWEGWKAIDK 359 (388)
Q Consensus 286 ~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~ 359 (388)
.++ +. ..+.+.++ .++.+++++|.||+|+|++||+.. .++.+++++.+.+|++... -..+.|...|+
T Consensus 242 ~~~-~~-~~v~~~~~----~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t-~~p~VyAiGDv 313 (471)
T PRK06467 242 AKE-DG-IYVTMEGK----KAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRT-NVPHIFAIGDI 313 (471)
T ss_pred EcC-CE-EEEEEEeC----CCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCccc-CCCCEEEehhh
Confidence 543 22 23433221 123467999999999999999842 3466666666777765432 22355555554
No 27
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.94 E-value=1e-25 Score=222.28 Aligned_cols=241 Identities=17% Similarity=0.223 Sum_probs=162.3
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcc---------------------------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPE--------------------------- 64 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~--------------------------- 64 (388)
.+||+||||||||++||..+++ .|.+|+|+|+. .+||.| +.||.|....
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAAN--HGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDW 78 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHh--CCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCH
Confidence 4799999999999999999999 89999999985 789887 5688776410
Q ss_pred ----------hhHHHHHHHHhhcCCCcEEEceEEEEE---Eeee--cccccccCEEEEeeCCCCCCCCCCCCCCCCCeee
Q psy4525 65 ----------VKNVINTFTKTGDNPRVNFYGNICLGQ---DISL--GDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIIS 129 (388)
Q Consensus 65 ----------~~~~~~~~~~~~~~~~i~~~~~~~v~~---~~~~--~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~ 129 (388)
...+...+...+++.+++++.+..... .+.+ +.....||+||||||+.+ +.|++||.+. .++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p-~~p~i~G~~~--~~~ 155 (446)
T TIGR01424 79 KKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRP-QKPNLPGHEL--GIT 155 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcC-CCCCCCCccc--eec
Confidence 012333455566778898887654221 1222 222348999999999998 5778888642 222
Q ss_pred cccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccc
Q psy4525 130 ARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQ 209 (388)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~ 209 (388)
..+.. .....+++++|||+|.+|+|+|..|. ..+ .+|+++.+.+.+.
T Consensus 156 ~~~~~------------~l~~~~~~vvVIGgG~~g~E~A~~l~--------------------~~G-~~Vtli~~~~~~l 202 (446)
T TIGR01424 156 SNEAF------------HLPTLPKSILILGGGYIAVEFAGIWR--------------------GLG-VQVTLIYRGELIL 202 (446)
T ss_pred hHHhh------------cccccCCeEEEECCcHHHHHHHHHHH--------------------HcC-CeEEEEEeCCCCC
Confidence 22221 11123689999999999999999775 223 5799999987653
Q ss_pred ccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCC
Q psy4525 210 VAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDN 289 (388)
Q Consensus 210 ~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~ 289 (388)
..+. ++++ +.+.+.+. +.||+++++..++++..+++
T Consensus 203 ~~~d-~~~~-------------------------------~~l~~~l~------------~~gV~i~~~~~v~~i~~~~~ 238 (446)
T TIGR01424 203 RGFD-DDMR-------------------------------ALLARNME------------GRGIRIHPQTSLTSITKTDD 238 (446)
T ss_pred cccC-HHHH-------------------------------HHHHHHHH------------HCCCEEEeCCEEEEEEEcCC
Confidence 3222 1111 11222222 57999999999999975433
Q ss_pred CceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCCC
Q psy4525 290 GAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEGV 346 (388)
Q Consensus 290 ~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~~ 346 (388)
+ ..+.+ .+++++++|.||+|+|++||+.. .++.+++++.+.+|+...
T Consensus 239 ~--~~v~~--------~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~ 290 (446)
T TIGR01424 239 G--LKVTL--------SHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSR 290 (446)
T ss_pred e--EEEEE--------cCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCc
Confidence 3 22322 24457999999999999999742 345566555577776653
No 28
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.94 E-value=1.3e-25 Score=222.80 Aligned_cols=243 Identities=14% Similarity=0.196 Sum_probs=163.8
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcc-------------------------h--
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPE-------------------------V-- 65 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~-------------------------~-- 65 (388)
+||+||||||||++||..+++ .|.+|+|||+.+ +||.| ++||.|.+.. .
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~--~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 77 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAE--LGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGE 77 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHH
Confidence 589999999999999999999 899999999975 77776 6787774210 0
Q ss_pred -----hHHHHH-----HHHhhcCCCcEEEceEEEEE---Eeeeccc--ccccCEEEEeeCCCCCCCCCCCCCCCCCeeec
Q psy4525 66 -----KNVINT-----FTKTGDNPRVNFYGNICLGQ---DISLGDL--TNAYHAVVLTYGADNDKKLNIPGEDGKNIISA 130 (388)
Q Consensus 66 -----~~~~~~-----~~~~~~~~~i~~~~~~~v~~---~~~~~~~--~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~ 130 (388)
+++... +...+++.+++++.+..... .+.+.+. ...||+||||||+.+ +.|++||.+..++++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p-~~p~i~G~~~~~~~~~ 156 (463)
T TIGR02053 78 LLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARP-AIPPIPGLKEAGYLTS 156 (463)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCC-CCCCCCCcccCceECc
Confidence 112111 23456677898887655321 2444332 247999999999988 5788999776566655
Q ss_pred ccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccc
Q psy4525 131 RSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQV 210 (388)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~ 210 (388)
.++.. ....+++++|||+|.+|+|+|..|. +.+ .+|+++.|.+.+..
T Consensus 157 ~~~~~------------~~~~~~~vvIIGgG~~g~E~A~~l~--------------------~~g-~~Vtli~~~~~~l~ 203 (463)
T TIGR02053 157 EEALA------------LDRIPESLAVIGGGAIGVELAQAFA--------------------RLG-SEVTILQRSDRLLP 203 (463)
T ss_pred hhhhC------------cccCCCeEEEECCCHHHHHHHHHHH--------------------HcC-CcEEEEEcCCcCCC
Confidence 44431 1123589999999999999999876 233 57999999876543
Q ss_pred cCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCC
Q psy4525 211 AFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNG 290 (388)
Q Consensus 211 ~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~ 290 (388)
.+. +++. ..+.+.+ ...||++++++.++++..+++
T Consensus 204 ~~d-~~~~-------------------------------~~l~~~l------------~~~gV~i~~~~~V~~i~~~~~- 238 (463)
T TIGR02053 204 REE-PEIS-------------------------------AAVEEAL------------AEEGIEVVTSAQVKAVSVRGG- 238 (463)
T ss_pred ccC-HHHH-------------------------------HHHHHHH------------HHcCCEEEcCcEEEEEEEcCC-
Confidence 321 2221 1111222 257999999999999986432
Q ss_pred ceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCC
Q psy4525 291 AITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKE 344 (388)
Q Consensus 291 ~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~ 344 (388)
...+.+.. .++++++++|.||+|+|++||... .++.+++++.+.+|+.
T Consensus 239 -~~~v~~~~-----~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~ 291 (463)
T TIGR02053 239 -GKIITVEK-----PGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDET 291 (463)
T ss_pred -EEEEEEEe-----CCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCC
Confidence 22333321 234468999999999999999852 2344555555777754
No 29
>PRK06116 glutathione reductase; Validated
Probab=99.94 E-value=1.2e-25 Score=222.20 Aligned_cols=242 Identities=18% Similarity=0.252 Sum_probs=162.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcc--------------------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPE-------------------------- 64 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~-------------------------- 64 (388)
..+||+||||||||++||..+++ .|.+|+|||+. .+||.| +.||.|....
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~--~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 79 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAM--YGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKF 79 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--CCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCc
Confidence 35899999999999999999999 89999999986 788876 6677665310
Q ss_pred -hh-----------HHHHHHHHhhcCCCcEEEceEEEEE---EeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeee
Q psy4525 65 -VK-----------NVINTFTKTGDNPRVNFYGNICLGQ---DISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIIS 129 (388)
Q Consensus 65 -~~-----------~~~~~~~~~~~~~~i~~~~~~~v~~---~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~ 129 (388)
.. .+...+.+.+.+.+++++.++.... .++++.....||+||+|||+.+ +.|++||.+ .+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~~g~~~~~d~lViATGs~p-~~p~i~g~~--~~~~ 156 (450)
T PRK06116 80 DWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEVNGERYTADHILIATGGRP-SIPDIPGAE--YGIT 156 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCCCC-CCCCCCCcc--eeEc
Confidence 01 1112233345567898887754321 2444333358999999999988 577888754 2443
Q ss_pred cccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccc
Q psy4525 130 ARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQ 209 (388)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~ 209 (388)
..++.. ....+++++|||+|.+|+|+|..|. +.+ .+|+++.|.+.+.
T Consensus 157 ~~~~~~------------~~~~~~~vvViGgG~~g~E~A~~l~--------------------~~g-~~Vtlv~~~~~~l 203 (450)
T PRK06116 157 SDGFFA------------LEELPKRVAVVGAGYIAVEFAGVLN--------------------GLG-SETHLFVRGDAPL 203 (450)
T ss_pred hhHhhC------------ccccCCeEEEECCCHHHHHHHHHHH--------------------HcC-CeEEEEecCCCCc
Confidence 333321 1123689999999999999999775 233 5799999987643
Q ss_pred ccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCC
Q psy4525 210 VAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDN 289 (388)
Q Consensus 210 ~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~ 289 (388)
..+. +++. +.+.+.+. +.||++++++.++++..+++
T Consensus 204 ~~~~-~~~~-------------------------------~~l~~~L~------------~~GV~i~~~~~V~~i~~~~~ 239 (450)
T PRK06116 204 RGFD-PDIR-------------------------------ETLVEEME------------KKGIRLHTNAVPKAVEKNAD 239 (450)
T ss_pred cccC-HHHH-------------------------------HHHHHHHH------------HCCcEEECCCEEEEEEEcCC
Confidence 3222 1211 12222222 67999999999999986543
Q ss_pred CceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 290 GAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 290 ~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
+.+ .+.+ .++++++||.||+|+|++||... .++.+++++.+.+|+..
T Consensus 240 g~~-~v~~--------~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~ 291 (450)
T PRK06116 240 GSL-TLTL--------EDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQ 291 (450)
T ss_pred ceE-EEEE--------cCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCC
Confidence 422 2332 23457999999999999999852 34556655447776543
No 30
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.94 E-value=3.1e-25 Score=224.74 Aligned_cols=254 Identities=24% Similarity=0.375 Sum_probs=183.9
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
...++|+|||+||+||++|..|++ .|++|++||+.+.+||++++++ |.+...+++.....+.+.+.|++++.++.++
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~--~G~~V~v~e~~~~~GG~l~~gi-p~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~ 211 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRR--MGHAVTIFEAGPKLGGMMRYGI-PAYRLPREVLDAEIQRILDLGVEVRLGVRVG 211 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCCeeeecC-CCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence 457899999999999999999999 8999999999999999999998 7777777777776777778899998887764
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHH
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARI 170 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~ 170 (388)
.++........||+||+|||+...+.+.++|.+..+++...++....... .....+++|+|||+|++|+|.+..
T Consensus 212 ~~~~~~~~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~------~~~~~gk~v~ViGgg~~a~d~a~~ 285 (564)
T PRK12771 212 EDITLEQLEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEG------EPPFLGKRVVVIGGGNTAMDAART 285 (564)
T ss_pred CcCCHHHHHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhcc------CCcCCCCCEEEECChHHHHHHHHH
Confidence 44433333347999999999987567789998888888877776432211 122347899999999999999985
Q ss_pred hccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhh
Q psy4525 171 LLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRK 250 (388)
Q Consensus 171 L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 250 (388)
+. +.++++|++++|.+....+....++.+
T Consensus 286 a~--------------------~lga~~v~ii~r~~~~~~~~~~~~~~~------------------------------- 314 (564)
T PRK12771 286 AR--------------------RLGAEEVTIVYRRTREDMPAHDEEIEE------------------------------- 314 (564)
T ss_pred HH--------------------HcCCCEEEEEEecCcccCCCCHHHHHH-------------------------------
Confidence 54 345578999999865433322222211
Q ss_pred HHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEc---------cCcccc-CCceeEEecceEEEcc
Q psy4525 251 RLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFA---------NQQALV-TEDTELIPSGIAFRSI 320 (388)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~---------~~~~~~-~~~~~~l~~D~Vi~a~ 320 (388)
..+.||+++++..+.++..++++.+ ++++. +++... .++..++++|.||+|+
T Consensus 315 -----------------a~~~GVki~~~~~~~~i~~~~~~~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~ 376 (564)
T PRK12771 315 -----------------ALREGVEINWLRTPVEIEGDENGAT-GLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAI 376 (564)
T ss_pred -----------------HHHcCCEEEecCCcEEEEcCCCCEE-EEEEEEEEecccCCCCCeeecCCceEEEECCEEEECc
Confidence 1157899999999999986544443 54331 121111 4556789999999999
Q ss_pred ccCCccCC----CCCcccCCCccccCC
Q psy4525 321 GYQSRCVD----SDIPFNEKSCTVIPK 343 (388)
Q Consensus 321 G~~p~~~~----~~l~~~~~~gi~l~~ 343 (388)
|+.|+... .++. +.++.+.+|.
T Consensus 377 G~~p~~~~~~~~~gl~-~~~G~i~vd~ 402 (564)
T PRK12771 377 GQDIDSAGLESVPGVE-VGRGVVQVDP 402 (564)
T ss_pred CCCCchhhhhhccCcc-cCCCCEEeCC
Confidence 99998531 2343 3444455654
No 31
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.94 E-value=2.4e-25 Score=220.94 Aligned_cols=244 Identities=15% Similarity=0.136 Sum_probs=165.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcc--------------------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPE-------------------------- 64 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~-------------------------- 64 (388)
..+||+||||||||+++|..|.+ .|.+|++||+.+.+||.| ++|+.|....
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~--~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAK--LGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRIT 81 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--CCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccC
Confidence 35899999999999999999999 899999999988899987 5577664311
Q ss_pred hhHH-----------HHHHHHhhcCCCcEEEceEEEEE-----Eeeeccc---ccccCEEEEeeCCCCCCCCCCCCCCCC
Q psy4525 65 VKNV-----------INTFTKTGDNPRVNFYGNICLGQ-----DISLGDL---TNAYHAVVLTYGADNDKKLNIPGEDGK 125 (388)
Q Consensus 65 ~~~~-----------~~~~~~~~~~~~i~~~~~~~v~~-----~~~~~~~---~~~yd~lvlAtG~~~~~~~~i~g~~~~ 125 (388)
..++ .+.+.+++.+.+++++.+..... .+...+. ...||+||||||+.+ +.|++++.+.+
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p-~~p~~~~~~~~ 160 (461)
T PRK05249 82 FADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRP-YRPPDVDFDHP 160 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCC-CCCCCCCCCCC
Confidence 1111 11233455667888887654211 1222222 348999999999988 46666666666
Q ss_pred CeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeec
Q psy4525 126 NIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRR 205 (388)
Q Consensus 126 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~ 205 (388)
+++++.++... ...+++++|||+|++|+|+|..|+ +. ..+|+++.|+
T Consensus 161 ~v~~~~~~~~~------------~~~~~~v~IiGgG~~g~E~A~~l~--------------------~~-g~~Vtli~~~ 207 (461)
T PRK05249 161 RIYDSDSILSL------------DHLPRSLIIYGAGVIGCEYASIFA--------------------AL-GVKVTLINTR 207 (461)
T ss_pred eEEcHHHhhch------------hhcCCeEEEECCCHHHHHHHHHHH--------------------Hc-CCeEEEEecC
Confidence 77766655421 123689999999999999999876 23 3579999998
Q ss_pred CcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeee
Q psy4525 206 GALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFK 285 (388)
Q Consensus 206 ~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~ 285 (388)
+.+...+. +++. ..+.+.+. +.|+++++++.++++.
T Consensus 208 ~~~l~~~d-~~~~-------------------------------~~l~~~l~------------~~gI~v~~~~~v~~i~ 243 (461)
T PRK05249 208 DRLLSFLD-DEIS-------------------------------DALSYHLR------------DSGVTIRHNEEVEKVE 243 (461)
T ss_pred CCcCCcCC-HHHH-------------------------------HHHHHHHH------------HcCCEEEECCEEEEEE
Confidence 76543222 2221 12222222 5799999999999997
Q ss_pred eCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 286 LNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 286 ~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
.++ +.+ .+++ .++++++||.||+|+|++||+.. .++.+++.+.+.+|+..
T Consensus 244 ~~~-~~~-~v~~--------~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~ 298 (461)
T PRK05249 244 GGD-DGV-IVHL--------KSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENY 298 (461)
T ss_pred EeC-CeE-EEEE--------CCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCc
Confidence 643 222 2322 23457999999999999999742 34556655557776543
No 32
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1e-24 Score=202.07 Aligned_cols=242 Identities=21% Similarity=0.272 Sum_probs=167.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee-----CCCCCC---cchhHHHHHHHHhhcCCCcEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY-----GVAPDH---PEVKNVINTFTKTGDNPRVNF 83 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~-----g~~p~~---~~~~~~~~~~~~~~~~~~i~~ 83 (388)
..+||+|||||||||+||.++.+ .+.++++++....+||.+.. +. |.+ ....++.+.+.+++..+++++
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r--~~l~~~li~~~~~~gg~~~~~~~veny-pg~~~~~~g~~L~~~~~~~a~~~~~~~ 78 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAAR--AGLKVVLILEGGEPGGQLTKTTDVENY-PGFPGGILGPELMEQMKEQAEKFGVEI 78 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHH--cCCCcEEEEecCCcCCccccceeecCC-CCCccCCchHHHHHHHHHHHhhcCeEE
Confidence 35799999999999999999999 89884444444466766521 11 333 357788999999999999887
Q ss_pred EceEEEEE-------EeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEE
Q psy4525 84 YGNICLGQ-------DISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEAT 156 (388)
Q Consensus 84 ~~~~~v~~-------~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vv 156 (388)
........ .+++++.....++||||||+.+ +.+.+||.. +|.+ .+.++|..+...+++++|+
T Consensus 79 ~~~~v~~v~~~~~~F~v~t~~~~~~ak~vIiAtG~~~-~~~~~~~e~--------e~~g--~gv~yc~~cdg~~~~k~v~ 147 (305)
T COG0492 79 VEDEVEKVELEGGPFKVKTDKGTYEAKAVIIATGAGA-RKLGVPGEE--------EFEG--KGVSYCATCDGFFKGKDVV 147 (305)
T ss_pred EEEEEEEEeecCceEEEEECCCeEEEeEEEECcCCcc-cCCCCCcch--------hhcC--CceEEeeecCccccCCeEE
Confidence 76333221 1333444456789999999988 688888654 2332 1233444333367789999
Q ss_pred EEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccc
Q psy4525 157 ILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLC 236 (388)
Q Consensus 157 VIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~ 236 (388)
|||||++|+|.|..|+ .-+++||+++|++.+... +.
T Consensus 148 ViGgG~sAve~Al~L~---------------------~~a~~Vtlv~r~~~~ra~---~~-------------------- 183 (305)
T COG0492 148 VIGGGDSAVEEALYLS---------------------KIAKKVTLVHRRDEFRAE---EI-------------------- 183 (305)
T ss_pred EEcCCHHHHHHHHHHH---------------------HhcCeEEEEecCcccCcC---HH--------------------
Confidence 9999999999999997 455789999999875431 11
Q ss_pred cchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceE
Q psy4525 237 GVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIA 316 (388)
Q Consensus 237 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~V 316 (388)
+.+.+. ...++.+++++.++++.++ + +.++++.+.+ +..+++++|.|
T Consensus 184 ---------------~~~~l~-----------~~~~i~~~~~~~i~ei~G~--~-v~~v~l~~~~----~~~~~~~~~gv 230 (305)
T COG0492 184 ---------------LVERLK-----------KNVKIEVLTNTVVKEILGD--D-VEGVVLKNVK----GEEKELPVDGV 230 (305)
T ss_pred ---------------HHHHHH-----------hcCCeEEEeCCceeEEecC--c-cceEEEEecC----CceEEEEeceE
Confidence 111111 1238999999999999964 3 7888886542 56679999999
Q ss_pred EEccccCCccCC-CCC-cccCCCccccCCC
Q psy4525 317 FRSIGYQSRCVD-SDI-PFNEKSCTVIPKE 344 (388)
Q Consensus 317 i~a~G~~p~~~~-~~l-~~~~~~gi~l~~~ 344 (388)
++++|..|++.. .++ .+++.+.+++++.
T Consensus 231 f~~iG~~p~~~~~~~~~~~~~~g~I~v~~~ 260 (305)
T COG0492 231 FIAIGHLPNTELLKGLGVLDENGYIVVDEE 260 (305)
T ss_pred EEecCCCCchHHHhhccccCCCCcEEcCCC
Confidence 999999999732 111 1344555555554
No 33
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.94 E-value=1.5e-24 Score=202.95 Aligned_cols=254 Identities=21% Similarity=0.259 Sum_probs=168.0
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeC----CCCCC---cchhHHHHHHHHhhcCCCcEEEce
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYG----VAPDH---PEVKNVINTFTKTGDNPRVNFYGN 86 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g----~~p~~---~~~~~~~~~~~~~~~~~~i~~~~~ 86 (388)
++|+||||||||+++|..|++ .|.+|+|||+.+ +||.+... ..|.+ ....++..++.+++++++++++..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~ 77 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAAR--ANLKTLIIEGME-PGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYE 77 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHH--CCCCEEEEeccC-CCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEE
Confidence 589999999999999999999 899999999886 66665321 01333 234678888888888889998874
Q ss_pred EEEEEE-------eeeccc-ccccCEEEEeeCCCCCCCCCCCCCCC---CCeeecccccccccCCCCccccCcCCCCCeE
Q psy4525 87 ICLGQD-------ISLGDL-TNAYHAVVLTYGADNDKKLNIPGEDG---KNIISARSFVGWYNGLPEDASLDLSLDCEEA 155 (388)
Q Consensus 87 ~~v~~~-------~~~~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v 155 (388)
..+..+ +...+. ...||+||+|||+.+ +.+++||.+. .+++.... +. .....+++|
T Consensus 78 ~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~-~~~~i~g~~~~~~~~~~~~~~----------~~--~~~~~~~~v 144 (300)
T TIGR01292 78 EVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASA-RKLGIPGEDEFLGRGVSYCAT----------CD--GPFFKNKEV 144 (300)
T ss_pred EEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCc-ccCCCCChhhcCCccEEEeee----------cC--hhhcCCCEE
Confidence 333221 222222 347999999999987 4778887541 12221111 00 122357899
Q ss_pred EEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEeccccc
Q psy4525 156 TILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQL 235 (388)
Q Consensus 156 vVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~ 235 (388)
+|||+|++|+|+|..|+ ...++|+++.|++.+...
T Consensus 145 ~ViG~G~~~~e~a~~l~---------------------~~~~~V~~v~~~~~~~~~------------------------ 179 (300)
T TIGR01292 145 AVVGGGDSAIEEALYLT---------------------RIAKKVTLVHRRDKFRAE------------------------ 179 (300)
T ss_pred EEECCChHHHHHHHHHH---------------------hhcCEEEEEEeCcccCcC------------------------
Confidence 99999999999999876 224689999998643210
Q ss_pred ccchhhhccccchhhHHHHHHHhhCCCCCCCCCCce-eEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecc
Q psy4525 236 CGVHEASATLARPRKRLTELILKTSNPDESKSNCSK-YFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSG 314 (388)
Q Consensus 236 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D 314 (388)
+.+.+.+. +. ||++++++.++++..+ +.+..+++.+. .+++++++++|
T Consensus 180 --------------~~~~~~l~------------~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~---~~g~~~~i~~D 228 (300)
T TIGR01292 180 --------------KILLDRLR------------KNPNIEFLWNSTVKEIVGD--NKVEGVKIKNT---VTGEEEELKVD 228 (300)
T ss_pred --------------HHHHHHHH------------hCCCeEEEeccEEEEEEcc--CcEEEEEEEec---CCCceEEEEcc
Confidence 11111221 34 9999999999999853 35656655321 13566789999
Q ss_pred eEEEccccCCccCC--CCCcccCCCccccCCCCCCeecchhhHHhHHH
Q psy4525 315 IAFRSIGYQSRCVD--SDIPFNEKSCTVIPKEGVPVVTWEGWKAIDKE 360 (388)
Q Consensus 315 ~Vi~a~G~~p~~~~--~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~~ 360 (388)
.||+|+|++|+... ..+.+++++.+.+|+... .-..+.|...|+.
T Consensus 229 ~vi~a~G~~~~~~~l~~~~~~~~~g~i~v~~~~~-t~~~~vya~GD~~ 275 (300)
T TIGR01292 229 GVFIAIGHEPNTELLKGLLELDEGGYIVTDEGMR-TSVPGVFAAGDVR 275 (300)
T ss_pred EEEEeeCCCCChHHHHHhheecCCCcEEECCCCc-cCCCCEEEeeccc
Confidence 99999999998731 114455555666766532 2233555555544
No 34
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.94 E-value=4.4e-25 Score=217.76 Aligned_cols=255 Identities=16% Similarity=0.183 Sum_probs=167.3
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC-CCCce-eeCCCCCCcchh----------------HHHHHH--
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV-PFGLV-RYGVAPDHPEVK----------------NVINTF-- 72 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~-~gg~~-~~g~~p~~~~~~----------------~~~~~~-- 72 (388)
.+||+||||||||++||..|++ .|.+|+|||+.+. +||.| +.||.|...... .+...+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~--~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAK--AGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRN 80 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHH--CCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999 8999999999764 78887 567777643111 111111
Q ss_pred ---HHhhcCCCcEEEceEEEEE-----Eeeeccc--ccccCEEEEeeCCCCCCCCCCCCCC-CCCeeecccccccccCCC
Q psy4525 73 ---TKTGDNPRVNFYGNICLGQ-----DISLGDL--TNAYHAVVLTYGADNDKKLNIPGED-GKNIISARSFVGWYNGLP 141 (388)
Q Consensus 73 ---~~~~~~~~i~~~~~~~v~~-----~~~~~~~--~~~yd~lvlAtG~~~~~~~~i~g~~-~~~v~~~~~~~~~~~~~~ 141 (388)
.+..+..+++++.+..... .+...+. ...||+||+|||+.+ +.|++||.+ .++++++.++..
T Consensus 81 ~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p-~~p~i~G~~~~~~v~~~~~~~~------ 153 (441)
T PRK08010 81 KNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQT-VVPPIPGITTTPGVYDSTGLLN------ 153 (441)
T ss_pred hHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcC-CCCCCCCccCCCCEEChhHhhc------
Confidence 1222334888876643211 1222232 348999999999998 578899964 466776554431
Q ss_pred CccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHh
Q psy4525 142 EDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMT 221 (388)
Q Consensus 142 ~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~ 221 (388)
....+++++|||+|.+|+|+|..|. ....+|+++.|.+.+...+ ++++.
T Consensus 154 ------~~~~~~~v~ViGgG~~g~E~A~~l~---------------------~~g~~Vtli~~~~~~l~~~-~~~~~--- 202 (441)
T PRK08010 154 ------LKELPGHLGILGGGYIGVEFASMFA---------------------NFGSKVTILEAASLFLPRE-DRDIA--- 202 (441)
T ss_pred ------ccccCCeEEEECCCHHHHHHHHHHH---------------------HCCCeEEEEecCCCCCCCc-CHHHH---
Confidence 1123679999999999999999876 2235799999987654322 12221
Q ss_pred cCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCc
Q psy4525 222 KLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQ 301 (388)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~ 301 (388)
..+.+.+ .+.||++++++.++++..++ +.+ .+.
T Consensus 203 ----------------------------~~l~~~l------------~~~gV~v~~~~~v~~i~~~~-~~v-~v~----- 235 (441)
T PRK08010 203 ----------------------------DNIATIL------------RDQGVDIILNAHVERISHHE-NQV-QVH----- 235 (441)
T ss_pred ----------------------------HHHHHHH------------HhCCCEEEeCCEEEEEEEcC-CEE-EEE-----
Confidence 1122222 26799999999999998643 322 222
Q ss_pred cccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCCCCeecchhhHHhHH
Q psy4525 302 ALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEGVPVVTWEGWKAIDK 359 (388)
Q Consensus 302 ~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~ 359 (388)
++++ ++++|.|++|+|++||+.. .++.+++++++.+|++.... ..+.|...|+
T Consensus 236 ---~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts-~~~IyA~GD~ 293 (441)
T PRK08010 236 ---SEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTT-ADNIWAMGDV 293 (441)
T ss_pred ---EcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccC-CCCEEEeeec
Confidence 1222 5899999999999999842 34666665667787654321 2244444443
No 35
>PLN02507 glutathione reductase
Probab=99.94 E-value=5.7e-25 Score=219.11 Aligned_cols=243 Identities=17% Similarity=0.213 Sum_probs=160.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcC---------CCCCCCce-eeCCCCCCcc-----------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEK---------LPVPFGLV-RYGVAPDHPE----------------- 64 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~---------~~~~gg~~-~~g~~p~~~~----------------- 64 (388)
..+||+||||||+|+++|..+.+ .|.+|+|||+ ...+||.| +.||.|....
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~--~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G 101 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSAN--FGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYG 101 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcC
Confidence 35899999999999999999999 8999999996 35689987 6688764321
Q ss_pred ----------hhHHH-----------HHHHHhhcCCCcEEEceEEEE-----EEeeecccc---cccCEEEEeeCCCCCC
Q psy4525 65 ----------VKNVI-----------NTFTKTGDNPRVNFYGNICLG-----QDISLGDLT---NAYHAVVLTYGADNDK 115 (388)
Q Consensus 65 ----------~~~~~-----------~~~~~~~~~~~i~~~~~~~v~-----~~~~~~~~~---~~yd~lvlAtG~~~~~ 115 (388)
..++. ..+...+...+++++.+.... ..++..+.+ ..||+||||||+.+ +
T Consensus 102 ~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p-~ 180 (499)
T PLN02507 102 WEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRA-Q 180 (499)
T ss_pred cccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCC-C
Confidence 01111 112234455788887664321 123333332 37899999999988 4
Q ss_pred CCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCC
Q psy4525 116 KLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSR 195 (388)
Q Consensus 116 ~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
.|++||.+. .++..+.. .....+++++|||+|.+|+|+|..|. ..
T Consensus 181 ~p~ipG~~~--~~~~~~~~------------~l~~~~k~vvVIGgG~ig~E~A~~l~---------------------~~ 225 (499)
T PLN02507 181 RPNIPGKEL--AITSDEAL------------SLEELPKRAVVLGGGYIAVEFASIWR---------------------GM 225 (499)
T ss_pred CCCCCCccc--eechHHhh------------hhhhcCCeEEEECCcHHHHHHHHHHH---------------------Hc
Confidence 778888542 22222221 11123689999999999999999775 22
Q ss_pred CcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEE
Q psy4525 196 IKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRP 275 (388)
Q Consensus 196 ~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 275 (388)
..+|+++.|.+.+...+. ++++ +.+.+.+. +.||++
T Consensus 226 G~~Vtli~~~~~~l~~~d-~~~~-------------------------------~~l~~~l~------------~~GI~i 261 (499)
T PLN02507 226 GATVDLFFRKELPLRGFD-DEMR-------------------------------AVVARNLE------------GRGINL 261 (499)
T ss_pred CCeEEEEEecCCcCcccC-HHHH-------------------------------HHHHHHHH------------hCCCEE
Confidence 357999999876433222 2221 12222222 579999
Q ss_pred EecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCCC
Q psy4525 276 IFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEGV 346 (388)
Q Consensus 276 ~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~~ 346 (388)
++++.++++..++ +.+ .+. +++++++++|.|++|+|++||+.. .++.+++++.+.+|++..
T Consensus 262 ~~~~~V~~i~~~~-~~~-~v~--------~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~ 327 (499)
T PLN02507 262 HPRTNLTQLTKTE-GGI-KVI--------TDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSR 327 (499)
T ss_pred EeCCEEEEEEEeC-CeE-EEE--------ECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCc
Confidence 9999999997543 222 232 234567999999999999999852 345566655688876653
No 36
>PLN02546 glutathione reductase
Probab=99.93 E-value=4.5e-25 Score=221.12 Aligned_cols=255 Identities=15% Similarity=0.187 Sum_probs=168.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcC---------CCCCCCce-eeCCCCCCcc------------------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEK---------LPVPFGLV-RYGVAPDHPE------------------ 64 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~---------~~~~gg~~-~~g~~p~~~~------------------ 64 (388)
.+||+|||+||+|+.||..+++ .|.+|+|+|+ ...+||.| ++||.|.+..
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~--~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~ 156 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASN--FGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGW 156 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCc
Confidence 4899999999999999999999 8999999996 23578877 7788764310
Q ss_pred --------------------hhHHHHHHHHhhcCCCcEEEceEEEEE---EeeecccccccCEEEEeeCCCCCCCCCCCC
Q psy4525 65 --------------------VKNVINTFTKTGDNPRVNFYGNICLGQ---DISLGDLTNAYHAVVLTYGADNDKKLNIPG 121 (388)
Q Consensus 65 --------------------~~~~~~~~~~~~~~~~i~~~~~~~v~~---~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g 121 (388)
..++..++.+.+++.+++++.+..... .+.++.....||+||||||+.+ ..|++||
T Consensus 157 ~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v~G~~~~~D~LVIATGs~p-~~P~IpG 235 (558)
T PLN02546 157 KYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDVDGKLYTARNILIAVGGRP-FIPDIPG 235 (558)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEECCEEEECCEEEEeCCCCC-CCCCCCC
Confidence 112233445566778899886643221 2333333458999999999998 4778888
Q ss_pred CCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEE
Q psy4525 122 EDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNL 201 (388)
Q Consensus 122 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 201 (388)
.+ .++++.++. .....+++|+|||+|++|+|+|..|+ ....+|++
T Consensus 236 ~~--~v~~~~~~l------------~~~~~~k~V~VIGgG~iGvE~A~~L~---------------------~~g~~Vtl 280 (558)
T PLN02546 236 IE--HAIDSDAAL------------DLPSKPEKIAIVGGGYIALEFAGIFN---------------------GLKSDVHV 280 (558)
T ss_pred hh--hccCHHHHH------------hccccCCeEEEECCCHHHHHHHHHHH---------------------hcCCeEEE
Confidence 54 344333322 11124689999999999999999876 22358999
Q ss_pred EeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcc
Q psy4525 202 VGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSP 281 (388)
Q Consensus 202 i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~ 281 (388)
+.|.+.+...+. ++++ +.+.+.+. +.||+++++..+
T Consensus 281 v~~~~~il~~~d-~~~~-------------------------------~~l~~~L~------------~~GV~i~~~~~v 316 (558)
T PLN02546 281 FIRQKKVLRGFD-EEVR-------------------------------DFVAEQMS------------LRGIEFHTEESP 316 (558)
T ss_pred EEeccccccccC-HHHH-------------------------------HHHHHHHH------------HCCcEEEeCCEE
Confidence 998876543221 2221 12222222 679999999999
Q ss_pred eeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCCCCeecchhhHH
Q psy4525 282 TEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEGVPVVTWEGWKA 356 (388)
Q Consensus 282 ~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~~~~~~~~~w~~ 356 (388)
.++..+.++.+ .++ +++++...+|.||+|+|++||+.. .++.++.++++.+|+..... ..+.|..
T Consensus 317 ~~i~~~~~g~v-~v~--------~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts-~p~IYAa 386 (558)
T PLN02546 317 QAIIKSADGSL-SLK--------TNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTS-VPSIWAV 386 (558)
T ss_pred EEEEEcCCCEE-EEE--------ECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeC-CCCEEEe
Confidence 99975433433 232 233445569999999999999842 35566655568887654321 2244444
Q ss_pred hHH
Q psy4525 357 IDK 359 (388)
Q Consensus 357 ~~~ 359 (388)
.|+
T Consensus 387 GDv 389 (558)
T PLN02546 387 GDV 389 (558)
T ss_pred ecc
Confidence 443
No 37
>PTZ00058 glutathione reductase; Provisional
Probab=99.93 E-value=9.2e-25 Score=218.76 Aligned_cols=257 Identities=13% Similarity=0.171 Sum_probs=171.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcc-------------------------h
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPE-------------------------V 65 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~-------------------------~ 65 (388)
..+||+||||||||++||..+++ .|.+|+|||++ .+||.| ++||.|.... .
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~--~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~ 123 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAAR--NKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNL 123 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHH--cCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCH
Confidence 46899999999999999999999 89999999987 688877 7788775420 0
Q ss_pred hH-----------HHHHHHHhhcCCCcEEEceEEE-EE--Eee--------------------e--------ccc-cccc
Q psy4525 66 KN-----------VINTFTKTGDNPRVNFYGNICL-GQ--DIS--------------------L--------GDL-TNAY 102 (388)
Q Consensus 66 ~~-----------~~~~~~~~~~~~~i~~~~~~~v-~~--~~~--------------------~--------~~~-~~~y 102 (388)
.. +.+.+.+.+++.|++++.+... .. .+. + ++. ...|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~a 203 (561)
T PTZ00058 124 PLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEG 203 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEEC
Confidence 01 1122334456678888766531 11 111 1 122 3489
Q ss_pred CEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCccccccc
Q psy4525 103 HAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTD 182 (388)
Q Consensus 103 d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~ 182 (388)
|+||||||+.| +.|++||.+ .+++..++.. . ..+++|+|||+|.+|+|+|..|.
T Consensus 204 d~lVIATGS~P-~~P~IpG~~--~v~ts~~~~~------------l-~~pk~VvIIGgG~iGlE~A~~l~---------- 257 (561)
T PTZ00058 204 KNILIAVGNKP-IFPDVKGKE--FTISSDDFFK------------I-KEAKRIGIAGSGYIAVELINVVN---------- 257 (561)
T ss_pred CEEEEecCCCC-CCCCCCCce--eEEEHHHHhh------------c-cCCCEEEEECCcHHHHHHHHHHH----------
Confidence 99999999988 578888864 3554444331 1 12689999999999999999776
Q ss_pred CchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCC
Q psy4525 183 ITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNP 262 (388)
Q Consensus 183 ~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 262 (388)
..+ .+||++.|.+.+...+. +++. +.+.+.+
T Consensus 258 ----------~~G-~~Vtli~~~~~il~~~d-~~i~-------------------------------~~l~~~L------ 288 (561)
T PTZ00058 258 ----------RLG-AESYIFARGNRLLRKFD-ETII-------------------------------NELENDM------ 288 (561)
T ss_pred ----------HcC-CcEEEEEecccccccCC-HHHH-------------------------------HHHHHHH------
Confidence 233 57999999876543322 2221 1122222
Q ss_pred CCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCCCCC---c-ccCCCc
Q psy4525 263 DESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVDSDI---P-FNEKSC 338 (388)
Q Consensus 263 ~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~~~l---~-~~~~~g 338 (388)
.+.||+++++..+.++..++++.+. +.+ .++++++++|.|++|+|++||+...++ . ...+++
T Consensus 289 ------~~~GV~i~~~~~V~~I~~~~~~~v~-v~~-------~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~G~ 354 (561)
T PTZ00058 289 ------KKNNINIITHANVEEIEKVKEKNLT-IYL-------SDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGY 354 (561)
T ss_pred ------HHCCCEEEeCCEEEEEEecCCCcEE-EEE-------CCCCEEEECCEEEECcCCCCCccccCccccceecCCCe
Confidence 2579999999999999864322232 222 233467999999999999999853222 1 233445
Q ss_pred cccCCCCCCeecchhhHHhHHHH
Q psy4525 339 TVIPKEGVPVVTWEGWKAIDKEE 361 (388)
Q Consensus 339 i~l~~~~~~~~~~~~w~~~~~~~ 361 (388)
+.+|+.... -..+.|...|+..
T Consensus 355 I~VDe~lqT-s~p~IYA~GDv~~ 376 (561)
T PTZ00058 355 IKVDDNQRT-SVKHIYAVGDCCM 376 (561)
T ss_pred EEECcCCcc-CCCCEEEeEeccC
Confidence 778876543 3347888888876
No 38
>PRK10262 thioredoxin reductase; Provisional
Probab=99.93 E-value=2.8e-24 Score=203.45 Aligned_cols=262 Identities=16% Similarity=0.206 Sum_probs=168.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee-----CCCCC---CcchhHHHHHHHHhhcCCCcE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY-----GVAPD---HPEVKNVINTFTKTGDNPRVN 82 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~-----g~~p~---~~~~~~~~~~~~~~~~~~~i~ 82 (388)
...++|+|||||||||+||..+.+ .|.++++||+. ..||.+.. .. |. ......+.+++.++...++.+
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~--~g~~~~~ie~~-~~gg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR--ANLQPVLITGM-EKGGQLTTTTEVENW-PGDPNDLTGPLLMERMHEHATKFETE 79 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH--CCCCeEEEEee-cCCCceecCceECCC-CCCCCCCCHHHHHHHHHHHHHHCCCE
Confidence 356899999999999999999999 89999999954 56776522 22 32 223455677777777777776
Q ss_pred EEceEEEEEE-------eeecccccccCEEEEeeCCCCCCCCCCCCCC---CCCeeecccccccccCCCCccccCcCCCC
Q psy4525 83 FYGNICLGQD-------ISLGDLTNAYHAVVLTYGADNDKKLNIPGED---GKNIISARSFVGWYNGLPEDASLDLSLDC 152 (388)
Q Consensus 83 ~~~~~~v~~~-------~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (388)
++.+.....+ ++.+.....||+||+|||+.+ +.|++||.+ ..++...... . .....+
T Consensus 80 ~~~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~-~~~~i~g~~~~~~~~v~~~~~~----------~--~~~~~g 146 (321)
T PRK10262 80 IIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASA-RYLGLPSEEAFKGRGVSACATC----------D--GFFYRN 146 (321)
T ss_pred EEeeEEEEEEecCCeEEEEecCCEEEECEEEECCCCCC-CCCCCCCHHHcCCCcEEEeecC----------C--HHHcCC
Confidence 6654322211 222222347999999999998 578888854 1222211110 0 122457
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecc
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRN 232 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~ 232 (388)
++++|||+|++|+|+|..|+ ...++|+++.|++.+.. . +.+.
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~---------------------~~~~~Vtlv~~~~~~~~--~-~~~~-------------- 188 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLS---------------------NIASEVHLIHRRDGFRA--E-KILI-------------- 188 (321)
T ss_pred CEEEEECCCHHHHHHHHHHH---------------------hhCCEEEEEEECCccCC--C-HHHH--------------
Confidence 99999999999999999886 22468999999865311 1 1111
Q ss_pred cccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEe
Q psy4525 233 EQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIP 312 (388)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~ 312 (388)
+.+.+. +.+.+|+++++..++++..++ +.+..+++.++. ..++.++++
T Consensus 189 -----------------~~~~~~------------l~~~gV~i~~~~~v~~v~~~~-~~~~~v~~~~~~--~~~~~~~i~ 236 (321)
T PRK10262 189 -----------------KRLMDK------------VENGNIILHTNRTLEEVTGDQ-MGVTGVRLRDTQ--NSDNIESLD 236 (321)
T ss_pred -----------------HHHHhh------------ccCCCeEEEeCCEEEEEEcCC-ccEEEEEEEEcC--CCCeEEEEE
Confidence 111111 236799999999999998542 456667665321 123446899
Q ss_pred cceEEEccccCCccCC--CCCcccCCCccccCCC----CCCeecchhhHHhHHH
Q psy4525 313 SGIAFRSIGYQSRCVD--SDIPFNEKSCTVIPKE----GVPVVTWEGWKAIDKE 360 (388)
Q Consensus 313 ~D~Vi~a~G~~p~~~~--~~l~~~~~~gi~l~~~----~~~~~~~~~w~~~~~~ 360 (388)
+|.||+++|++||... .++.++ ++++.+|.. ....-..+.|...|+.
T Consensus 237 ~D~vv~a~G~~p~~~l~~~~l~~~-~g~i~vd~~~~~~~~~t~~~~VyA~GD~~ 289 (321)
T PRK10262 237 VAGLFVAIGHSPNTAIFEGQLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVM 289 (321)
T ss_pred CCEEEEEeCCccChhHhhcccccc-CCEEEECCCCcccccccCCCCEEECeecc
Confidence 9999999999999852 235443 345666651 1112233566666664
No 39
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.93 E-value=4.3e-25 Score=230.51 Aligned_cols=267 Identities=12% Similarity=0.070 Sum_probs=175.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhC--CCCcEEEEcCCCCCC-Cce-eeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLL--PQSTVDIYEKLPVPF-GLV-RYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNIC 88 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~--~g~~v~lie~~~~~g-g~~-~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 88 (388)
+++|||||+|+||+.+|..|+++. .+++|+||++++.++ ..+ ....... ...+++.....+++++.+++++.++.
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~-~~~~~l~~~~~~~~~~~gI~~~~g~~ 81 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSH-HTAEELSLVREGFYEKHGIKVLVGER 81 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcC-CCHHHccCCCHHHHHhCCCEEEcCCE
Confidence 358999999999999999998752 468999999997753 211 0000011 12333433345566778999998765
Q ss_pred EE-EE-----eeecccc-cccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCC
Q psy4525 89 LG-QD-----ISLGDLT-NAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQG 161 (388)
Q Consensus 89 v~-~~-----~~~~~~~-~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG 161 (388)
+. .+ +.+.+.. ..||+||||||+.+ +.|++||.+.++++..+.+..... + . .....+++++|||||
T Consensus 82 V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p-~~p~ipG~~~~~v~~~rt~~d~~~-l---~--~~~~~~k~vvVIGgG 154 (847)
T PRK14989 82 AITINRQEKVIHSSAGRTVFYDKLIMATGSYP-WIPPIKGSETQDCFVYRTIEDLNA-I---E--ACARRSKRGAVVGGG 154 (847)
T ss_pred EEEEeCCCcEEEECCCcEEECCEEEECCCCCc-CCCCCCCCCCCCeEEECCHHHHHH-H---H--HHHhcCCeEEEECCC
Confidence 42 22 3333333 48999999999998 578899988888776544432110 0 0 111246899999999
Q ss_pred hHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhh
Q psy4525 162 NVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEA 241 (388)
Q Consensus 162 ~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~ 241 (388)
++|+|+|..|. +.+ .+|+++.+.+.+.....+++..
T Consensus 155 ~iGlE~A~~L~--------------------~~G-~~VtvVe~~~~ll~~~ld~~~~----------------------- 190 (847)
T PRK14989 155 LLGLEAAGALK--------------------NLG-VETHVIEFAPMLMAEQLDQMGG----------------------- 190 (847)
T ss_pred HHHHHHHHHHH--------------------HcC-CeEEEEeccccchhhhcCHHHH-----------------------
Confidence 99999999876 234 4699999887654322222221
Q ss_pred hccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccc
Q psy4525 242 SATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIG 321 (388)
Q Consensus 242 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G 321 (388)
+.+.+.+ .+.||+++++..++++..++.+.+..+.+ .+++++++|+||+|+|
T Consensus 191 --------~~l~~~L------------~~~GV~v~~~~~v~~I~~~~~~~~~~v~~--------~dG~~i~~D~Vv~A~G 242 (847)
T PRK14989 191 --------EQLRRKI------------ESMGVRVHTSKNTLEIVQEGVEARKTMRF--------ADGSELEVDFIVFSTG 242 (847)
T ss_pred --------HHHHHHH------------HHCCCEEEcCCeEEEEEecCCCceEEEEE--------CCCCEEEcCEEEECCC
Confidence 1222222 26899999999999997543344445544 4456899999999999
Q ss_pred cCCccC---CCCCcccCCCccccCCCCCCeecchhhHHhHHH
Q psy4525 322 YQSRCV---DSDIPFNEKSCTVIPKEGVPVVTWEGWKAIDKE 360 (388)
Q Consensus 322 ~~p~~~---~~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~~ 360 (388)
++||+. ..++.++++++|.+|++.... ..+.|...|++
T Consensus 243 ~rPn~~L~~~~Gl~~~~~G~I~VD~~l~Ts-~p~IYAiGD~a 283 (847)
T PRK14989 243 IRPQDKLATQCGLAVAPRGGIVINDSCQTS-DPDIYAIGECA 283 (847)
T ss_pred cccCchHHhhcCccCCCCCcEEECCCCcCC-CCCEEEeecce
Confidence 999984 256777777789998765432 23444444444
No 40
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.93 E-value=1.8e-24 Score=214.77 Aligned_cols=243 Identities=14% Similarity=0.198 Sum_probs=158.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCc--------------------------c
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHP--------------------------E 64 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~--------------------------~ 64 (388)
..+||+||||||||++||..+++ .|.+|+|+|+.. +||.| +.||.|.+. .
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~--~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQ--LGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID 79 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHH--CCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence 35899999999999999999999 899999999986 88876 667776532 1
Q ss_pred hhHHHHH-----------HHHhhcCCCcEEEceEEEEE---Eeeec----ccccccCEEEEeeCCCCCCCCCCCCCCCC-
Q psy4525 65 VKNVINT-----------FTKTGDNPRVNFYGNICLGQ---DISLG----DLTNAYHAVVLTYGADNDKKLNIPGEDGK- 125 (388)
Q Consensus 65 ~~~~~~~-----------~~~~~~~~~i~~~~~~~v~~---~~~~~----~~~~~yd~lvlAtG~~~~~~~~i~g~~~~- 125 (388)
..++.++ +...+++.+++++.+..... .+++. .....||+||||||+.+. .+ ||.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~-~~--pg~~~~~ 156 (462)
T PRK06416 80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPR-EL--PGIEIDG 156 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCC-CC--CCCCCCC
Confidence 1222222 33455677899887764321 12222 123489999999999874 32 444322
Q ss_pred -CeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEee
Q psy4525 126 -NIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGR 204 (388)
Q Consensus 126 -~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r 204 (388)
.+++..+... ....+++++|||+|++|+|+|..|. +.+ .+||++.|
T Consensus 157 ~~v~~~~~~~~------------~~~~~~~vvVvGgG~~g~E~A~~l~--------------------~~g-~~Vtli~~ 203 (462)
T PRK06416 157 RVIWTSDEALN------------LDEVPKSLVVIGGGYIGVEFASAYA--------------------SLG-AEVTIVEA 203 (462)
T ss_pred CeEEcchHhhC------------ccccCCeEEEECCCHHHHHHHHHHH--------------------HcC-CeEEEEEc
Confidence 3444433321 1123689999999999999999775 233 47999999
Q ss_pred cCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceee
Q psy4525 205 RGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEF 284 (388)
Q Consensus 205 ~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i 284 (388)
.+.+...+. +++. ..+.+.+. +.||++++++.++++
T Consensus 204 ~~~~l~~~~-~~~~-------------------------------~~l~~~l~------------~~gV~i~~~~~V~~i 239 (462)
T PRK06416 204 LPRILPGED-KEIS-------------------------------KLAERALK------------KRGIKIKTGAKAKKV 239 (462)
T ss_pred CCCcCCcCC-HHHH-------------------------------HHHHHHHH------------HcCCEEEeCCEEEEE
Confidence 876543322 1211 11222222 578999999999999
Q ss_pred eeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 285 KLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 285 ~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
..++ +.+ .+.+.+ .++.++++||.||+|+|++|+... .++.++ ++.+.+|++.
T Consensus 240 ~~~~-~~v-~v~~~~-----gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~ 297 (462)
T PRK06416 240 EQTD-DGV-TVTLED-----GGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQL 297 (462)
T ss_pred EEeC-CEE-EEEEEe-----CCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCC
Confidence 8643 222 233221 123367999999999999999852 334455 4446666543
No 41
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.93 E-value=9.7e-25 Score=214.50 Aligned_cols=163 Identities=18% Similarity=0.274 Sum_probs=120.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCC--------------------------------
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGV-------------------------------- 58 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~-------------------------------- 58 (388)
...++|+|||||||||+||.+|++ .|+++++||+++.+||.|.|.-
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~--~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~ 85 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRR--EGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPREC 85 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHh--cCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhh
Confidence 456899999999999999999999 8999999999999999996520
Q ss_pred -----CC-------------CCcchhHHHHHHHHhhcCCCcE--EEceEEEEE--------Eeeeccc-----ccccCEE
Q psy4525 59 -----AP-------------DHPEVKNVINTFTKTGDNPRVN--FYGNICLGQ--------DISLGDL-----TNAYHAV 105 (388)
Q Consensus 59 -----~p-------------~~~~~~~~~~~~~~~~~~~~i~--~~~~~~v~~--------~~~~~~~-----~~~yd~l 105 (388)
.| .++...++.++++++++++++. +++++.|.. .++.... +..||+|
T Consensus 86 m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~V 165 (461)
T PLN02172 86 MGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAV 165 (461)
T ss_pred ccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEE
Confidence 01 1223467888999999988886 677776632 1222211 2368999
Q ss_pred EEeeCCC-CCCCCCCCCCC-CCC-eeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCccccccc
Q psy4525 106 VLTYGAD-NDKKLNIPGED-GKN-IISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTD 182 (388)
Q Consensus 106 vlAtG~~-~~~~~~i~g~~-~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~ 182 (388)
|+|||.. .++.|++||.+ .++ ++|+..|. ....+++|+|+|||+|+||+|+|..|+
T Consensus 166 IvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr-----------~~~~~~gk~VvVVG~G~Sg~diA~~L~---------- 224 (461)
T PLN02172 166 VVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYR-----------VPDPFKNEVVVVIGNFASGADISRDIA---------- 224 (461)
T ss_pred EEeccCCCCCcCCCCCCcccCCceEEEecccC-----------CccccCCCEEEEECCCcCHHHHHHHHH----------
Confidence 9999953 23578899874 233 33333332 133467899999999999999999887
Q ss_pred CchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 183 ITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 183 ~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
..+++|+++.|++.
T Consensus 225 -----------~~a~~V~l~~r~~~ 238 (461)
T PLN02172 225 -----------KVAKEVHIASRASE 238 (461)
T ss_pred -----------HhCCeEEEEEeecc
Confidence 34578999999863
No 42
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.93 E-value=3.7e-24 Score=212.20 Aligned_cols=245 Identities=15% Similarity=0.180 Sum_probs=155.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcchhH--HH--------------------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPEVKN--VI-------------------- 69 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~~~~--~~-------------------- 69 (388)
.+||+|||+||||++||..+.+ .|.+|+|+|+.+.+||.+ +.||.|.+..... ..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~--~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~ 80 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQ--LGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLN 80 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccC
Confidence 4799999999999999999999 899999999877899987 7788776532110 00
Q ss_pred ----------------HHHHHhhcCCCcEEEceEE-EE----EEeeeccc---ccccCEEEEeeCCCCCCCCCCCCCCCC
Q psy4525 70 ----------------NTFTKTGDNPRVNFYGNIC-LG----QDISLGDL---TNAYHAVVLTYGADNDKKLNIPGEDGK 125 (388)
Q Consensus 70 ----------------~~~~~~~~~~~i~~~~~~~-v~----~~~~~~~~---~~~yd~lvlAtG~~~~~~~~i~g~~~~ 125 (388)
......+++.+++++.+.. +. ..+...+. ...||+||||||+.|. ++||.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~---~ipg~~~~ 157 (466)
T PRK06115 81 LAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPT---PLPGVTID 157 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCC---CCCCCCCC
Confidence 1112223445676664432 11 11222222 2489999999999763 35564433
Q ss_pred C--eeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEe
Q psy4525 126 N--IISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVG 203 (388)
Q Consensus 126 ~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~ 203 (388)
+ +++..++.. ....+++++|||+|++|+|+|..|. +.+ .+|+++.
T Consensus 158 ~~~~~~~~~~~~------------~~~~~~~vvIIGgG~ig~E~A~~l~--------------------~~G-~~Vtlie 204 (466)
T PRK06115 158 NQRIIDSTGALS------------LPEVPKHLVVIGAGVIGLELGSVWR--------------------RLG-AQVTVVE 204 (466)
T ss_pred CCeEECHHHHhC------------CccCCCeEEEECCCHHHHHHHHHHH--------------------HcC-CeEEEEe
Confidence 3 333333221 1123689999999999999999775 233 5799999
Q ss_pred ecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCccee
Q psy4525 204 RRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTE 283 (388)
Q Consensus 204 r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~ 283 (388)
+.+.+...+. ++++ +.+.+.+. +.||++++++.+++
T Consensus 205 ~~~~il~~~d-~~~~-------------------------------~~l~~~l~------------~~gV~i~~~~~V~~ 240 (466)
T PRK06115 205 YLDRICPGTD-TETA-------------------------------KTLQKALT------------KQGMKFKLGSKVTG 240 (466)
T ss_pred CCCCCCCCCC-HHHH-------------------------------HHHHHHHH------------hcCCEEEECcEEEE
Confidence 9876543322 1111 12222222 57999999999999
Q ss_pred eeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 284 FKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 284 i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
+..++++. .+.+... ..++++++++|.|++|+|++||+.. .++.++ .+|+++|++.
T Consensus 241 i~~~~~~v--~v~~~~~---~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~-~~G~~vd~~~ 301 (466)
T PRK06115 241 ATAGADGV--SLTLEPA---AGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETD-KRGMLANDHH 301 (466)
T ss_pred EEEcCCeE--EEEEEEc---CCCceeEEEeCEEEEccCCccccccCCcccccceeC-CCCEEECCCe
Confidence 98643232 2222110 1244568999999999999999852 234444 3467776654
No 43
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.93 E-value=1.7e-24 Score=214.49 Aligned_cols=259 Identities=16% Similarity=0.209 Sum_probs=166.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCC-CCcEEEEcCC--------CCCCCce-eeCCCCCCcc-----------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLP-QSTVDIYEKL--------PVPFGLV-RYGVAPDHPE----------------- 64 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~-g~~v~lie~~--------~~~gg~~-~~g~~p~~~~----------------- 64 (388)
..+||+|||+||+|+.||..+++ . |.+|+|||+. ..+||.| ++||.|....
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~--~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~g 79 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAAT--LYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFG 79 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHH--hcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccC
Confidence 35899999999999999999999 7 8999999974 4689987 7788865310
Q ss_pred -----------hh-----------HHHHHHHHhhcC-CCcEEEceEEEE---EEeeecc---------cccccCEEEEee
Q psy4525 65 -----------VK-----------NVINTFTKTGDN-PRVNFYGNICLG---QDISLGD---------LTNAYHAVVLTY 109 (388)
Q Consensus 65 -----------~~-----------~~~~~~~~~~~~-~~i~~~~~~~v~---~~~~~~~---------~~~~yd~lvlAt 109 (388)
.. .+...+.+.+++ .+++++.+...- ..+.+.. ....||+|||||
T Consensus 80 i~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIAT 159 (486)
T TIGR01423 80 WEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLAT 159 (486)
T ss_pred eeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEec
Confidence 00 111112234555 488887554321 1133221 124899999999
Q ss_pred CCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHH
Q psy4525 110 GADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLE 189 (388)
Q Consensus 110 G~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~ 189 (388)
|+.| +.|++||.+ .+++..++.. ....+++++|||+|++|+|+|..+.
T Consensus 160 Gs~p-~~p~i~G~~--~~~~~~~~~~------------~~~~~~~vvIIGgG~iG~E~A~~~~----------------- 207 (486)
T TIGR01423 160 GSWP-QMLGIPGIE--HCISSNEAFY------------LDEPPRRVLTVGGGFISVEFAGIFN----------------- 207 (486)
T ss_pred CCCC-CCCCCCChh--heechhhhhc------------cccCCCeEEEECCCHHHHHHHHHHH-----------------
Confidence 9998 578888864 2333333221 1123689999999999999998664
Q ss_pred hhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCC
Q psy4525 190 KLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNC 269 (388)
Q Consensus 190 ~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 269 (388)
.+...+ .+||++.+.+.+...+. ++++ +.+.+.|.
T Consensus 208 ~l~~~G-~~Vtli~~~~~il~~~d-~~~~-------------------------------~~l~~~L~------------ 242 (486)
T TIGR01423 208 AYKPRG-GKVTLCYRNNMILRGFD-STLR-------------------------------KELTKQLR------------ 242 (486)
T ss_pred HhccCC-CeEEEEecCCccccccC-HHHH-------------------------------HHHHHHHH------------
Confidence 111223 58999999887643322 2221 22222222
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKE 344 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~ 344 (388)
+.||++++++.++++..++++ ...+.+ .+++++++|.|++|+|++||+.. .++.+++++.+.+|+.
T Consensus 243 ~~GI~i~~~~~v~~i~~~~~~-~~~v~~--------~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~ 313 (486)
T TIGR01423 243 ANGINIMTNENPAKVTLNADG-SKHVTF--------ESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEF 313 (486)
T ss_pred HcCCEEEcCCEEEEEEEcCCc-eEEEEE--------cCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCC
Confidence 679999999999999754333 233433 23457999999999999999852 3455665555777765
Q ss_pred CCCeecchhhHHhHH
Q psy4525 345 GVPVVTWEGWKAIDK 359 (388)
Q Consensus 345 ~~~~~~~~~w~~~~~ 359 (388)
... -..+.|...|+
T Consensus 314 l~T-s~~~IyA~GDv 327 (486)
T TIGR01423 314 SRT-NVPNIYAIGDV 327 (486)
T ss_pred CcC-CCCCEEEeeec
Confidence 432 12344544443
No 44
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.93 E-value=8.3e-25 Score=217.74 Aligned_cols=164 Identities=25% Similarity=0.358 Sum_probs=113.6
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCC---------C-----------------------CC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGV---------A-----------------------PD 61 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~---------~-----------------------p~ 61 (388)
++|+|||||++||++|+.|.+ .|+++++||+++.+||.|+|.- . |.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e--~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~ 79 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLE--EGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPD 79 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHH--TT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSS
T ss_pred CEEEEECccHHHHHHHHHHHH--CCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCC
Confidence 799999999999999999999 8999999999999999996521 0 33
Q ss_pred CcchhHHHHHHHHhhcCCCc--EEEceEEEEEE-------------eeecc-c---ccccCEEEEeeCCCC-CCCC--CC
Q psy4525 62 HPEVKNVINTFTKTGDNPRV--NFYGNICLGQD-------------ISLGD-L---TNAYHAVVLTYGADN-DKKL--NI 119 (388)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~i--~~~~~~~v~~~-------------~~~~~-~---~~~yd~lvlAtG~~~-~~~~--~i 119 (388)
++...++.++++.+++++++ .+++++.|... ++... . ...||+||+|||... +..| .+
T Consensus 80 f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~ 159 (531)
T PF00743_consen 80 FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSF 159 (531)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----
T ss_pred CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhh
Confidence 45578899999999998887 47788776421 22221 1 136999999999654 2233 37
Q ss_pred CCCC--CCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCc
Q psy4525 120 PGED--GKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIK 197 (388)
Q Consensus 120 ~g~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (388)
||.+ ...++|+.+|.. ...+++|+|+|||+|+||+|+|.+|+ ..++
T Consensus 160 ~G~e~F~G~i~HS~~yr~-----------~~~f~gKrVlVVG~g~Sg~DIa~el~---------------------~~a~ 207 (531)
T PF00743_consen 160 PGLEKFKGEIIHSKDYRD-----------PEPFKGKRVLVVGGGNSGADIAVELS---------------------RVAK 207 (531)
T ss_dssp CTGGGHCSEEEEGGG--T-----------GGGGTTSEEEEESSSHHHHHHHHHHT---------------------TTSC
T ss_pred hhhhcCCeeEEccccCcC-----------hhhcCCCEEEEEeCCHhHHHHHHHHH---------------------HhcC
Confidence 7864 234667776652 34567999999999999999999997 4567
Q ss_pred EEEEEeecCccccc
Q psy4525 198 SVNLVGRRGALQVA 211 (388)
Q Consensus 198 ~V~~i~r~~~~~~~ 211 (388)
+|++..|++.|..+
T Consensus 208 ~v~~s~R~~~wv~p 221 (531)
T PF00743_consen 208 KVYLSTRRGAWVLP 221 (531)
T ss_dssp CEEEECC-------
T ss_pred CeEEEEeccccccc
Confidence 89999999999876
No 45
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.93 E-value=5.8e-24 Score=210.79 Aligned_cols=241 Identities=15% Similarity=0.173 Sum_probs=162.2
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcch---------------------------
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPEV--------------------------- 65 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~~--------------------------- 65 (388)
++|+|||+||+|+.+|..+.+ .|.+|+++|+.. +||.+ ++||.|.+...
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~--~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 78 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQ--LGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARV 78 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCccccc
Confidence 689999999999999999999 899999999874 78877 67887654211
Q ss_pred --hH-----------HHHHHHHhhcCCCcEEEceEEEE-------EE--eeeccc---ccccCEEEEeeCCCCCCCCCCC
Q psy4525 66 --KN-----------VINTFTKTGDNPRVNFYGNICLG-------QD--ISLGDL---TNAYHAVVLTYGADNDKKLNIP 120 (388)
Q Consensus 66 --~~-----------~~~~~~~~~~~~~i~~~~~~~v~-------~~--~~~~~~---~~~yd~lvlAtG~~~~~~~~i~ 120 (388)
.. +...+.+.+++.+++++.+.... .. +...+. ...||+||||||+.+. .++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~-~~p~~ 157 (466)
T PRK07845 79 DLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPR-ILPTA 157 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCC-CCCCC
Confidence 00 11233445667789988775433 11 222222 2489999999999883 55555
Q ss_pred CCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEE
Q psy4525 121 GEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVN 200 (388)
Q Consensus 121 g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 200 (388)
+.+.+++++..++.. ....+++++|||+|.+|+|+|..|+ ....+|+
T Consensus 158 ~~~~~~v~~~~~~~~------------~~~~~~~vvVIGgG~ig~E~A~~l~---------------------~~g~~Vt 204 (466)
T PRK07845 158 EPDGERILTWRQLYD------------LDELPEHLIVVGSGVTGAEFASAYT---------------------ELGVKVT 204 (466)
T ss_pred CCCCceEEeehhhhc------------ccccCCeEEEECCCHHHHHHHHHHH---------------------HcCCeEE
Confidence 544455665554431 1112589999999999999999876 2235799
Q ss_pred EEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCc
Q psy4525 201 LVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRS 280 (388)
Q Consensus 201 ~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 280 (388)
++.+.+.+...+. +++. ..+.+.|. +.||+++++..
T Consensus 205 li~~~~~~l~~~d-~~~~-------------------------------~~l~~~L~------------~~gV~i~~~~~ 240 (466)
T PRK07845 205 LVSSRDRVLPGED-ADAA-------------------------------EVLEEVFA------------RRGMTVLKRSR 240 (466)
T ss_pred EEEcCCcCCCCCC-HHHH-------------------------------HHHHHHHH------------HCCcEEEcCCE
Confidence 9999876544322 2221 11222222 57999999999
Q ss_pred ceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 281 PTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 281 ~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
+.++..++ +.+ .+.+ .+++++++|.|++|+|++||+.. .++++++++.+.+|+..
T Consensus 241 v~~v~~~~-~~~-~v~~--------~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~ 300 (466)
T PRK07845 241 AESVERTG-DGV-VVTL--------TDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVS 300 (466)
T ss_pred EEEEEEeC-CEE-EEEE--------CCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCc
Confidence 99997543 222 2332 23457999999999999999852 45666665557777654
No 46
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.92 E-value=8.7e-25 Score=207.15 Aligned_cols=264 Identities=19% Similarity=0.227 Sum_probs=168.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC-CCceeeCCCCCCcchhHHHHHHHHhhcCCC-cEEEceEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP-FGLVRYGVAPDHPEVKNVINTFTKTGDNPR-VNFYGNICL 89 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~-gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~-i~~~~~~~v 89 (388)
.+++|||||||++|+++|..|.+..++.+|+++|+.+.. .-.+.|.+..+.....++...+.+.++..+ ++|..++..
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~ 81 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVT 81 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEE
Confidence 357999999999999999999995224899999998764 233344443344456677777888888554 999988877
Q ss_pred EEE-----eeecc-cccccCEEEEeeCCCCCCCCCCCCCC-----CCCeeecccccccccCCCCccc-cCcCCCCCeEEE
Q psy4525 90 GQD-----ISLGD-LTNAYHAVVLTYGADNDKKLNIPGED-----GKNIISARSFVGWYNGLPEDAS-LDLSLDCEEATI 157 (388)
Q Consensus 90 ~~~-----~~~~~-~~~~yd~lvlAtG~~~~~~~~i~g~~-----~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~vvV 157 (388)
..+ +++.+ ....||+||+|+|+.+ ..+.+||.. ...+-.+..+..++........ ......-.+++|
T Consensus 82 ~ID~~~k~V~~~~~~~i~YD~LVvalGs~~-~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~I 160 (405)
T COG1252 82 DIDRDAKKVTLADLGEISYDYLVVALGSET-NYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVI 160 (405)
T ss_pred EEcccCCEEEeCCCccccccEEEEecCCcC-CcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEE
Confidence 544 55555 3458999999999999 489999843 1122222222222110000000 000011247999
Q ss_pred EcCChHHHHHHHHhccCCcccccc-cCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccc
Q psy4525 158 LGQGNVAMDVARILLSPVDQLKST-DITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLC 236 (388)
Q Consensus 158 IGgG~sg~e~a~~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~ 236 (388)
+|||++|+|+|.+|+...+.+.+. ... .. --+|+++.+.+.+...|.+.-
T Consensus 161 vGgG~TGVElAgeL~~~~~~l~~~~~~~--------~~-~~~V~LVea~p~ILp~~~~~l-------------------- 211 (405)
T COG1252 161 VGGGPTGVELAGELAERLHRLLKKFRVD--------PS-ELRVILVEAGPRILPMFPPKL-------------------- 211 (405)
T ss_pred ECCChhHHHHHHHHHHHHHHHhhhhcCC--------cc-ccEEEEEccCchhccCCCHHH--------------------
Confidence 999999999999998443333111 000 01 127999999988765544211
Q ss_pred cchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCcee-EEecce
Q psy4525 237 GVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTE-LIPSGI 315 (388)
Q Consensus 237 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~-~l~~D~ 315 (388)
.......| .+.||++++++.|+++..+. +. ..++. +|+||+
T Consensus 212 ------------~~~a~~~L------------~~~GV~v~l~~~Vt~v~~~~------v~--------~~~g~~~I~~~t 253 (405)
T COG1252 212 ------------SKYAERAL------------EKLGVEVLLGTPVTEVTPDG------VT--------LKDGEEEIPADT 253 (405)
T ss_pred ------------HHHHHHHH------------HHCCCEEEcCCceEEECCCc------EE--------EccCCeeEecCE
Confidence 11222222 27899999999999998432 22 23333 699999
Q ss_pred EEEccccCCccCCCC---CcccCCCccccCC
Q psy4525 316 AFRSIGYQSRCVDSD---IPFNEKSCTVIPK 343 (388)
Q Consensus 316 Vi~a~G~~p~~~~~~---l~~~~~~gi~l~~ 343 (388)
+|||+|.+++++... ++.+..++++++.
T Consensus 254 vvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~ 284 (405)
T COG1252 254 VVWAAGVRASPLLKDLSGLETDRRGRLVVNP 284 (405)
T ss_pred EEEcCCCcCChhhhhcChhhhccCCCEEeCC
Confidence 999999999987533 4445445565543
No 47
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.92 E-value=1e-23 Score=209.74 Aligned_cols=230 Identities=15% Similarity=0.164 Sum_probs=148.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcc-------------------------
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPE------------------------- 64 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~------------------------- 64 (388)
...+||+||||||||++||..+++ .|.+|+|+|+. .+||.| ++||.|.+..
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~--~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 78 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQ--LGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPAL 78 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHh--CCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCcc
Confidence 346899999999999999999999 89999999986 789888 6677765321
Q ss_pred -hhH-------H----HHHHHHhhcCCCcEEEceEEEE------------EEeeeccc---ccccCEEEEeeCCCCCCCC
Q psy4525 65 -VKN-------V----INTFTKTGDNPRVNFYGNICLG------------QDISLGDL---TNAYHAVVLTYGADNDKKL 117 (388)
Q Consensus 65 -~~~-------~----~~~~~~~~~~~~i~~~~~~~v~------------~~~~~~~~---~~~yd~lvlAtG~~~~~~~ 117 (388)
... + ...+.+.+++.+++++.+.... ..+...+. ...||+||||||+.+. .+
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~-~~ 157 (472)
T PRK05976 79 DFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPV-EL 157 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCC-CC
Confidence 001 1 1112344566788888775321 11222222 3489999999999873 33
Q ss_pred CCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCc
Q psy4525 118 NIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIK 197 (388)
Q Consensus 118 ~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (388)
+....+...+++..+... ....+++++|||+|++|+|+|..|+ +.+ .
T Consensus 158 p~~~~~~~~~~~~~~~~~------------~~~~~~~vvIIGgG~~G~E~A~~l~--------------------~~g-~ 204 (472)
T PRK05976 158 PGLPFDGEYVISSDEALS------------LETLPKSLVIVGGGVIGLEWASMLA--------------------DFG-V 204 (472)
T ss_pred CCCCCCCceEEcchHhhC------------ccccCCEEEEECCCHHHHHHHHHHH--------------------HcC-C
Confidence 222222223444433321 1123689999999999999999876 223 5
Q ss_pred EEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEe
Q psy4525 198 SVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIF 277 (388)
Q Consensus 198 ~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~ 277 (388)
+|+++.|.+.+...+. +++. +.+.+.+ .+.||++++
T Consensus 205 ~Vtli~~~~~il~~~~-~~~~-------------------------------~~l~~~l------------~~~gI~i~~ 240 (472)
T PRK05976 205 EVTVVEAADRILPTED-AELS-------------------------------KEVARLL------------KKLGVRVVT 240 (472)
T ss_pred eEEEEEecCccCCcCC-HHHH-------------------------------HHHHHHH------------HhcCCEEEe
Confidence 7999999876533221 1111 1122222 257999999
Q ss_pred cCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccC
Q psy4525 278 LRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCV 327 (388)
Q Consensus 278 ~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~ 327 (388)
++.++++....++.+..+... .++.++++||.||+|+|.+||..
T Consensus 241 ~~~v~~i~~~~~~~~~~~~~~------~g~~~~i~~D~vi~a~G~~p~~~ 284 (472)
T PRK05976 241 GAKVLGLTLKKDGGVLIVAEH------NGEEKTLEADKVLVSVGRRPNTE 284 (472)
T ss_pred CcEEEEEEEecCCCEEEEEEe------CCceEEEEeCEEEEeeCCccCCC
Confidence 999999974212333333221 23345799999999999999974
No 48
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.92 E-value=4e-24 Score=206.74 Aligned_cols=246 Identities=14% Similarity=0.165 Sum_probs=160.4
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC-CCc--eeeCCCCCCcchhHHHH-HHHHhhcCCCcEEEceEEE
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP-FGL--VRYGVAPDHPEVKNVIN-TFTKTGDNPRVNFYGNICL 89 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~-gg~--~~~g~~p~~~~~~~~~~-~~~~~~~~~~i~~~~~~~v 89 (388)
++|||||||+||+++|..|++..++.+|+||++++.. +.. +.+.+ .......++.. ...+++++++++++.++.+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V 81 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVF-SQGQRADDLTRQSAGEFAEQFNLRLFPHTWV 81 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHH-hCCCCHHHhhcCCHHHHHHhCCCEEECCCEE
Confidence 5899999999999999999987678899999988642 211 11111 12223334433 2445567789999877655
Q ss_pred E-EE-----eeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChH
Q psy4525 90 G-QD-----ISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNV 163 (388)
Q Consensus 90 ~-~~-----~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~s 163 (388)
. .+ ++.++....||+||+|||+.+ +.|++||.+. +++...+..... +. .....+++|+|||+|++
T Consensus 82 ~~id~~~~~v~~~~~~~~yd~LVlATG~~~-~~p~i~G~~~--v~~~~~~~~~~~----~~--~~~~~~~~vvViGgG~~ 152 (377)
T PRK04965 82 TDIDAEAQVVKSQGNQWQYDKLVLATGASA-FVPPIPGREL--MLTLNSQQEYRA----AE--TQLRDAQRVLVVGGGLI 152 (377)
T ss_pred EEEECCCCEEEECCeEEeCCEEEECCCCCC-CCCCCCCCce--EEEECCHHHHHH----HH--HHhhcCCeEEEECCCHH
Confidence 3 22 333333458999999999988 4788998653 555444321100 00 11224689999999999
Q ss_pred HHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhc
Q psy4525 164 AMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASA 243 (388)
Q Consensus 164 g~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~ 243 (388)
|+|+|..|. +. ..+|+++.+.+.+...+.++++.
T Consensus 153 g~e~A~~L~--------------------~~-g~~Vtlv~~~~~~l~~~~~~~~~------------------------- 186 (377)
T PRK04965 153 GTELAMDLC--------------------RA-GKAVTLVDNAASLLASLMPPEVS------------------------- 186 (377)
T ss_pred HHHHHHHHH--------------------hc-CCeEEEEecCCcccchhCCHHHH-------------------------
Confidence 999999886 22 35799999987654322222211
Q ss_pred cccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 244 TLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
+.+.+.+. +.|+++++++.++++..++ +. ..+.+ .++++++||.||+|+|++
T Consensus 187 ------~~l~~~l~------------~~gV~i~~~~~v~~i~~~~-~~-~~v~~--------~~g~~i~~D~vI~a~G~~ 238 (377)
T PRK04965 187 ------SRLQHRLT------------EMGVHLLLKSQLQGLEKTD-SG-IRATL--------DSGRSIEVDAVIAAAGLR 238 (377)
T ss_pred ------HHHHHHHH------------hCCCEEEECCeEEEEEccC-CE-EEEEE--------cCCcEEECCEEEECcCCC
Confidence 22222222 5789999999999998543 22 23333 345689999999999999
Q ss_pred CccCC---CCCcccCCCccccCCCC
Q psy4525 324 SRCVD---SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 324 p~~~~---~~l~~~~~~gi~l~~~~ 345 (388)
|+... .++..+ +|+.+|++.
T Consensus 239 p~~~l~~~~gl~~~--~gi~vd~~l 261 (377)
T PRK04965 239 PNTALARRAGLAVN--RGIVVDSYL 261 (377)
T ss_pred cchHHHHHCCCCcC--CCEEECCCc
Confidence 98632 355553 578887643
No 49
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.92 E-value=1.6e-23 Score=209.86 Aligned_cols=259 Identities=18% Similarity=0.207 Sum_probs=175.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee--CCC--C--CCcchhHHHHHHHHhhcCCCcEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY--GVA--P--DHPEVKNVINTFTKTGDNPRVNFY 84 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~--g~~--p--~~~~~~~~~~~~~~~~~~~~i~~~ 84 (388)
...++|+||||||||++||.++++ .|.+|+||+. .+||.+.. ++. + ......++...+.+++++.+++++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~--~G~~v~li~~--~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~ 285 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAAR--KGLRTAMVAE--RIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLM 285 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEec--CCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEE
Confidence 446899999999999999999999 8999999975 47887632 110 1 113456778888888888899998
Q ss_pred ceEEEEE--------Eeeeccc-ccccCEEEEeeCCCCCCCCCCCCCC---CCCeeecccccccccCCCCccccCcCCCC
Q psy4525 85 GNICLGQ--------DISLGDL-TNAYHAVVLTYGADNDKKLNIPGED---GKNIISARSFVGWYNGLPEDASLDLSLDC 152 (388)
Q Consensus 85 ~~~~v~~--------~~~~~~~-~~~yd~lvlAtG~~~~~~~~i~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (388)
.++.+.. .+...+. ...||+||+|||+.+ +.+++||.. ..+++.... +. .....+
T Consensus 286 ~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~-~~~~ipG~~~~~~~~v~~~~~----------~~--~~~~~~ 352 (515)
T TIGR03140 286 ENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARW-RKLGVPGEKEYIGKGVAYCPH----------CD--GPFFKG 352 (515)
T ss_pred cCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc-CCCCCCCHHHcCCCeEEEeec----------cC--hhhcCC
Confidence 7765531 1233333 247999999999987 578888853 112221111 10 112357
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecc
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRN 232 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~ 232 (388)
++|+|||||++|+|+|..|+ ...++||++.+.+.+...
T Consensus 353 k~VvViGgG~~g~E~A~~L~---------------------~~g~~Vtli~~~~~l~~~--------------------- 390 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLA---------------------GIVRHVTVLEFADELKAD--------------------- 390 (515)
T ss_pred CEEEEECCcHHHHHHHHHHH---------------------hcCcEEEEEEeCCcCChh---------------------
Confidence 89999999999999999886 234689999887643210
Q ss_pred cccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEe
Q psy4525 233 EQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIP 312 (388)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~ 312 (388)
..+...+. ...||++++++.++++..+ ++.+..+.+.++. ++++++++
T Consensus 391 -----------------~~l~~~l~-----------~~~gV~i~~~~~v~~i~~~-~~~v~~v~~~~~~---~~~~~~i~ 438 (515)
T TIGR03140 391 -----------------KVLQDKLK-----------SLPNVDILTSAQTTEIVGD-GDKVTGIRYQDRN---SGEEKQLD 438 (515)
T ss_pred -----------------HHHHHHHh-----------cCCCCEEEECCeeEEEEcC-CCEEEEEEEEECC---CCcEEEEE
Confidence 01111111 1369999999999999864 3677777765431 34557899
Q ss_pred cceEEEccccCCccCC--CCCcccCCCccccCCCCCCeecchhhHHhHHHH
Q psy4525 313 SGIAFRSIGYQSRCVD--SDIPFNEKSCTVIPKEGVPVVTWEGWKAIDKEE 361 (388)
Q Consensus 313 ~D~Vi~a~G~~p~~~~--~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~~~ 361 (388)
||.|++|+|++||+.. ..+.++.++++.+|+.... -..+.|...|+..
T Consensus 439 ~D~vi~a~G~~Pn~~~l~~~~~~~~~G~I~vd~~~~T-s~p~IyAaGDv~~ 488 (515)
T TIGR03140 439 LDGVFVQIGLVPNTEWLKDAVELNRRGEIVIDERGRT-SVPGIFAAGDVTT 488 (515)
T ss_pred cCEEEEEeCCcCCchHHhhhcccCCCCeEEECCCCCC-CCCCEEEcccccC
Confidence 9999999999999842 1255665556777766542 2346677777653
No 50
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.92 E-value=2.5e-23 Score=208.81 Aligned_cols=258 Identities=18% Similarity=0.218 Sum_probs=175.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee--eCCC--C--CCcchhHHHHHHHHhhcCCCcEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR--YGVA--P--DHPEVKNVINTFTKTGDNPRVNFY 84 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~--~g~~--p--~~~~~~~~~~~~~~~~~~~~i~~~ 84 (388)
...++|+||||||||++||.++++ .|+++++|++. +||.+. +++. + .+....++...+.+++++++++++
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~--~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~ 284 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAAR--KGIRTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIM 284 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 346899999999999999999999 89999999864 788773 2221 1 123567788888888988999988
Q ss_pred ceEEEEE--------Eeeeccc-ccccCEEEEeeCCCCCCCCCCCCCC---CCCeeecccccccccCCCCccccCcCCCC
Q psy4525 85 GNICLGQ--------DISLGDL-TNAYHAVVLTYGADNDKKLNIPGED---GKNIISARSFVGWYNGLPEDASLDLSLDC 152 (388)
Q Consensus 85 ~~~~v~~--------~~~~~~~-~~~yd~lvlAtG~~~~~~~~i~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (388)
.++.+.. .+...+. ...||.||+|||+.+ +.+++||.. ..+++... .+. .....+
T Consensus 285 ~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~-r~~~ipG~~~~~~~~v~~~~----------~~~--~~~~~g 351 (517)
T PRK15317 285 NLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARW-RNMNVPGEDEYRNKGVAYCP----------HCD--GPLFKG 351 (517)
T ss_pred cCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCc-CCCCCCCHHHhcCceEEEee----------ccC--chhcCC
Confidence 7765532 1222232 237999999999987 678888853 11222111 111 223458
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecc
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRN 232 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~ 232 (388)
++|+|||+|++|+|+|..|+ ...++|+++.|.+.+...
T Consensus 352 k~VvVVGgG~~g~e~A~~L~---------------------~~~~~Vtlv~~~~~l~~~--------------------- 389 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLA---------------------GIVKHVTVLEFAPELKAD--------------------- 389 (517)
T ss_pred CEEEEECCCHHHHHHHHHHH---------------------hcCCEEEEEEECcccccc---------------------
Confidence 99999999999999999886 334689999988653211
Q ss_pred cccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEe
Q psy4525 233 EQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIP 312 (388)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~ 312 (388)
+.+...+ ....||++++++.++++..+ ++.+..+++.+. .+++.++++
T Consensus 390 -----------------~~l~~~l-----------~~~~gI~i~~~~~v~~i~~~-~g~v~~v~~~~~---~~g~~~~i~ 437 (517)
T PRK15317 390 -----------------QVLQDKL-----------RSLPNVTIITNAQTTEVTGD-GDKVTGLTYKDR---TTGEEHHLE 437 (517)
T ss_pred -----------------HHHHHHH-----------hcCCCcEEEECcEEEEEEcC-CCcEEEEEEEEC---CCCcEEEEE
Confidence 0011111 11369999999999999864 367777776542 134456899
Q ss_pred cceEEEccccCCccCC--CCCcccCCCccccCCCCCCeecchhhHHhHHH
Q psy4525 313 SGIAFRSIGYQSRCVD--SDIPFNEKSCTVIPKEGVPVVTWEGWKAIDKE 360 (388)
Q Consensus 313 ~D~Vi~a~G~~p~~~~--~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~~ 360 (388)
||.|++++|++||+.. ..+.+++++.+.+|+.... -..+.|...|+.
T Consensus 438 ~D~v~~~~G~~p~~~~l~~~v~~~~~g~i~vd~~l~T-s~p~IyAaGDv~ 486 (517)
T PRK15317 438 LEGVFVQIGLVPNTEWLKGTVELNRRGEIIVDARGAT-SVPGVFAAGDCT 486 (517)
T ss_pred cCEEEEeECCccCchHHhhheeeCCCCcEEECcCCCC-CCCCEEECcccc
Confidence 9999999999998742 1255665555667655432 223566666654
No 51
>PRK07846 mycothione reductase; Reviewed
Probab=99.92 E-value=7.1e-24 Score=209.08 Aligned_cols=250 Identities=17% Similarity=0.220 Sum_probs=161.2
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCc--------------------------chh
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHP--------------------------EVK 66 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~--------------------------~~~ 66 (388)
+|++|||+||+|.+||.. . .|.+|+|+|+. .+||.| ++||.|.+. ...
T Consensus 2 yD~vVIG~G~~g~~aa~~--~--~G~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 76 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--F--ADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWP 76 (451)
T ss_pred CCEEEECCCHHHHHHHHH--H--CCCeEEEEeCC-CCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHH
Confidence 799999999999988765 4 59999999986 577776 778877531 011
Q ss_pred HHHHH-------H-----HHh-hcCCCcEEEceEEEEE---Eeeeccc-ccccCEEEEeeCCCCCCCCCCCCCCCCCeee
Q psy4525 67 NVINT-------F-----TKT-GDNPRVNFYGNICLGQ---DISLGDL-TNAYHAVVLTYGADNDKKLNIPGEDGKNIIS 129 (388)
Q Consensus 67 ~~~~~-------~-----~~~-~~~~~i~~~~~~~v~~---~~~~~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~ 129 (388)
++.++ + ... ++..+++++.+...-. .+++.+. ...||+||||||+.+ +.|++||.+...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs~p-~~p~i~g~~~~~~~~ 155 (451)
T PRK07846 77 DIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSRP-VIPPVIADSGVRYHT 155 (451)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCCCC-CCCCCCCcCCccEEc
Confidence 11111 1 111 4456777776554322 2444433 348999999999998 578888865444444
Q ss_pred cccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccc
Q psy4525 130 ARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQ 209 (388)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~ 209 (388)
..++.. ....+++++|||+|++|+|+|..|. +.+ .+|+++.|++.+.
T Consensus 156 ~~~~~~------------l~~~~~~vvIIGgG~iG~E~A~~l~--------------------~~G-~~Vtli~~~~~ll 202 (451)
T PRK07846 156 SDTIMR------------LPELPESLVIVGGGFIAAEFAHVFS--------------------ALG-VRVTVVNRSGRLL 202 (451)
T ss_pred hHHHhh------------hhhcCCeEEEECCCHHHHHHHHHHH--------------------HcC-CeEEEEEcCCccc
Confidence 444331 1123689999999999999999876 233 5799999987654
Q ss_pred ccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCC
Q psy4525 210 VAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDN 289 (388)
Q Consensus 210 ~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~ 289 (388)
..+. +++.+ .+.+.+ +.+++++++..++++..++
T Consensus 203 ~~~d-~~~~~-------------------------------~l~~l~-------------~~~v~i~~~~~v~~i~~~~- 236 (451)
T PRK07846 203 RHLD-DDISE-------------------------------RFTELA-------------SKRWDVRLGRNVVGVSQDG- 236 (451)
T ss_pred cccC-HHHHH-------------------------------HHHHHH-------------hcCeEEEeCCEEEEEEEcC-
Confidence 2221 22211 111111 3579999999999997543
Q ss_pred CceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCCCCeecchhhHHhH
Q psy4525 290 GAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEGVPVVTWEGWKAID 358 (388)
Q Consensus 290 ~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~ 358 (388)
+.+ .+.+ .++++++||.|++|+|++||+.. .++.+++++.+.+|++... -..+.|...|
T Consensus 237 ~~v-~v~~--------~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~T-s~p~IyA~GD 300 (451)
T PRK07846 237 SGV-TLRL--------DDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRT-SAEGVFALGD 300 (451)
T ss_pred CEE-EEEE--------CCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCccc-CCCCEEEEee
Confidence 222 2332 34568999999999999999842 3456666666777765432 2234444444
No 52
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.92 E-value=3.1e-24 Score=224.17 Aligned_cols=246 Identities=17% Similarity=0.225 Sum_probs=166.2
Q ss_pred EEEECccHHHHHHHHHHHhhC-CCCcEEEEcCCCCCCCceeeCC---CCCCcchhHHHHHHHHhhcCCCcEEEceEEEE-
Q psy4525 16 VCIVGSGPAGFYCAQQILKLL-PQSTVDIYEKLPVPFGLVRYGV---APDHPEVKNVINTFTKTGDNPRVNFYGNICLG- 90 (388)
Q Consensus 16 vvIIGaG~aGl~aA~~l~~~~-~g~~v~lie~~~~~gg~~~~g~---~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~- 90 (388)
|||||+|+||+++|..|++.. .+++|+||++++.++ +.+... .......+++.....+++++.+++++.++.+.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~-y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~ 79 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN-YNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQ 79 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC-cccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEE
Confidence 689999999999999998854 568999999998763 111111 11122334444444566677899999886553
Q ss_pred EE-----eeeccc-ccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHH
Q psy4525 91 QD-----ISLGDL-TNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVA 164 (388)
Q Consensus 91 ~~-----~~~~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg 164 (388)
.+ +.+.+. ...||+||+|||+.+ +.|++||.+.+++++.+.+..... + . .....+++++|||||++|
T Consensus 80 Id~~~k~V~~~~g~~~~yD~LVlATGs~p-~~p~ipG~~~~~v~~~rt~~d~~~-i---~--~~~~~~k~vvVVGgG~~G 152 (785)
T TIGR02374 80 IDTDQKQVITDAGRTLSYDKLILATGSYP-FILPIPGADKKGVYVFRTIEDLDA-I---M--AMAQRFKKAAVIGGGLLG 152 (785)
T ss_pred EECCCCEEEECCCcEeeCCEEEECCCCCc-CCCCCCCCCCCCEEEeCCHHHHHH-H---H--HHhhcCCeEEEECCCHHH
Confidence 22 333333 348999999999988 578899988888887655431100 0 0 111246899999999999
Q ss_pred HHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhcc
Q psy4525 165 MDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASAT 244 (388)
Q Consensus 165 ~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~ 244 (388)
+|+|..|. +.+ .+|+++.+.+.+.....+++..
T Consensus 153 lE~A~~L~--------------------~~G-~~Vtvv~~~~~ll~~~ld~~~~-------------------------- 185 (785)
T TIGR02374 153 LEAAVGLQ--------------------NLG-MDVSVIHHAPGLMAKQLDQTAG-------------------------- 185 (785)
T ss_pred HHHHHHHH--------------------hcC-CeEEEEccCCchhhhhcCHHHH--------------------------
Confidence 99999886 233 4799999887653321111111
Q ss_pred ccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCC
Q psy4525 245 LARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQS 324 (388)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p 324 (388)
..+.+.+ .+.||+++++..++++.. ++.+..+.+ .+++++++|+||+|+|++|
T Consensus 186 -----~~l~~~l------------~~~GV~v~~~~~v~~i~~--~~~~~~v~~--------~dG~~i~~D~Vi~a~G~~P 238 (785)
T TIGR02374 186 -----RLLQREL------------EQKGLTFLLEKDTVEIVG--ATKADRIRF--------KDGSSLEADLIVMAAGIRP 238 (785)
T ss_pred -----HHHHHHH------------HHcCCEEEeCCceEEEEc--CCceEEEEE--------CCCCEEEcCEEEECCCCCc
Confidence 1122222 267999999999999974 345666655 3446899999999999999
Q ss_pred ccCC---CCCcccCCCccccCCCC
Q psy4525 325 RCVD---SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 325 ~~~~---~~l~~~~~~gi~l~~~~ 345 (388)
|... .+++.+ +|+++|+..
T Consensus 239 n~~la~~~gl~~~--ggI~Vd~~~ 260 (785)
T TIGR02374 239 NDELAVSAGIKVN--RGIIVNDSM 260 (785)
T ss_pred CcHHHHhcCCccC--CCEEECCCc
Confidence 9842 455554 788887654
No 53
>PRK13748 putative mercuric reductase; Provisional
Probab=99.92 E-value=8.9e-24 Score=214.69 Aligned_cols=254 Identities=15% Similarity=0.145 Sum_probs=161.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCc---------------------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHP--------------------------- 63 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~--------------------------- 63 (388)
..+||+||||||||++||..+++ .|.+|+|||+. .+||.| +.||.|...
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~--~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 173 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVE--QGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI 173 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHh--CCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCcc
Confidence 35899999999999999999999 89999999997 789887 556665321
Q ss_pred chhHHHHH------------HHHhhcCC-CcEEEceEEEEE-----Eeeeccc---ccccCEEEEeeCCCCCCCCCCCCC
Q psy4525 64 EVKNVINT------------FTKTGDNP-RVNFYGNICLGQ-----DISLGDL---TNAYHAVVLTYGADNDKKLNIPGE 122 (388)
Q Consensus 64 ~~~~~~~~------------~~~~~~~~-~i~~~~~~~v~~-----~~~~~~~---~~~yd~lvlAtG~~~~~~~~i~g~ 122 (388)
..+.+.++ +...+.+. +++++.+..... .+...+. ...||+||||||+.+ +.|++||.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p-~~p~i~g~ 252 (561)
T PRK13748 174 DRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASP-AVPPIPGL 252 (561)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCC-CCCCCCCC
Confidence 01112211 11223343 677775543221 1222222 248999999999988 57888886
Q ss_pred CCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEE
Q psy4525 123 DGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLV 202 (388)
Q Consensus 123 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i 202 (388)
+...+++..+.. .....+++++|||+|++|+|+|..|. +. ..+|+++
T Consensus 253 ~~~~~~~~~~~~------------~~~~~~~~vvViGgG~ig~E~A~~l~--------------------~~-g~~Vtli 299 (561)
T PRK13748 253 KETPYWTSTEAL------------VSDTIPERLAVIGSSVVALELAQAFA--------------------RL-GSKVTIL 299 (561)
T ss_pred CccceEccHHHh------------hcccCCCeEEEECCCHHHHHHHHHHH--------------------Hc-CCEEEEE
Confidence 533333222211 11223689999999999999999876 23 3579999
Q ss_pred eecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcce
Q psy4525 203 GRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPT 282 (388)
Q Consensus 203 ~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~ 282 (388)
.|.. +...+ ++++. +.+.+.+. +.||++++++.++
T Consensus 300 ~~~~-~l~~~-d~~~~-------------------------------~~l~~~l~------------~~gI~i~~~~~v~ 334 (561)
T PRK13748 300 ARST-LFFRE-DPAIG-------------------------------EAVTAAFR------------AEGIEVLEHTQAS 334 (561)
T ss_pred ecCc-ccccc-CHHHH-------------------------------HHHHHHHH------------HCCCEEEcCCEEE
Confidence 9853 22221 12221 22222222 6799999999999
Q ss_pred eeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCCCCeecchhhHHh
Q psy4525 283 EFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEGVPVVTWEGWKAI 357 (388)
Q Consensus 283 ~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~~~~~~~~~w~~~ 357 (388)
++..++ +.+ .+. +.++ ++++|.||+|+|++||+.. .++.+++++++.+|++.... ..+.|...
T Consensus 335 ~i~~~~-~~~-~v~--------~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts-~~~IyA~G 402 (561)
T PRK13748 335 QVAHVD-GEF-VLT--------TGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTS-VPHIYAAG 402 (561)
T ss_pred EEEecC-CEE-EEE--------ecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccC-CCCEEEee
Confidence 987543 322 222 1222 5999999999999999842 35667666668787654321 22444444
Q ss_pred HH
Q psy4525 358 DK 359 (388)
Q Consensus 358 ~~ 359 (388)
|+
T Consensus 403 D~ 404 (561)
T PRK13748 403 DC 404 (561)
T ss_pred ec
Confidence 43
No 54
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.92 E-value=6e-24 Score=210.03 Aligned_cols=264 Identities=13% Similarity=0.121 Sum_probs=167.0
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCC-----CcchhHHHHHHHHhhcCCCcEEEceEE
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPD-----HPEVKNVINTFTKTGDNPRVNFYGNIC 88 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~ 88 (388)
++|||||||+||+++|..|++..++.+|+|||+++.++- ...+. |. +....++.....+.+.+.+++++.+..
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 78 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSF-GACGL-PYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHE 78 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCccee-ecCCC-ceEeccccCCHHHhhcCCHHHHHHCCCeEEecCE
Confidence 379999999999999999998545679999999976531 11111 11 122333444445556677898876654
Q ss_pred EEE------Eeeecc---c-ccc--cCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEE
Q psy4525 89 LGQ------DISLGD---L-TNA--YHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEAT 156 (388)
Q Consensus 89 v~~------~~~~~~---~-~~~--yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vv 156 (388)
+.. .+.+.+ . ... ||+||+|||+.+ +.+++||.+.+++++...+..... .........+++|+
T Consensus 79 V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~-~~~~i~g~~~~~v~~~~~~~~~~~----l~~~l~~~~~~~vv 153 (444)
T PRK09564 79 VVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARP-IIPPIKNINLENVYTLKSMEDGLA----LKELLKDEEIKNIV 153 (444)
T ss_pred EEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCC-CCCCCCCcCCCCEEEECCHHHHHH----HHHHHhhcCCCEEE
Confidence 431 133322 1 224 999999999988 477899988788887665432111 00000112468999
Q ss_pred EEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccc
Q psy4525 157 ILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLC 236 (388)
Q Consensus 157 VIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~ 236 (388)
|||+|.+|+|+|..|. ..+ .+|+++.+.+.+.....++++.
T Consensus 154 VvGgG~~g~e~A~~l~--------------------~~g-~~Vtli~~~~~~l~~~~~~~~~------------------ 194 (444)
T PRK09564 154 IIGAGFIGLEAVEAAK--------------------HLG-KNVRIIQLEDRILPDSFDKEIT------------------ 194 (444)
T ss_pred EECCCHHHHHHHHHHH--------------------hcC-CcEEEEeCCcccCchhcCHHHH------------------
Confidence 9999999999999775 223 5799999887643321122221
Q ss_pred cchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceE
Q psy4525 237 GVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIA 316 (388)
Q Consensus 237 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~V 316 (388)
+.+.+.+. +.||++++++.++++.. ++.+..+.. + +.+++||.|
T Consensus 195 -------------~~l~~~l~------------~~gI~v~~~~~v~~i~~--~~~~~~v~~--------~-~~~i~~d~v 238 (444)
T PRK09564 195 -------------DVMEEELR------------ENGVELHLNEFVKSLIG--EDKVEGVVT--------D-KGEYEADVV 238 (444)
T ss_pred -------------HHHHHHHH------------HCCCEEEcCCEEEEEec--CCcEEEEEe--------C-CCEEEcCEE
Confidence 11222222 57899999999999964 344444432 2 236999999
Q ss_pred EEccccCCccC---CCCCcccCCCccccCCCCCCeecchhhHHhHHH
Q psy4525 317 FRSIGYQSRCV---DSDIPFNEKSCTVIPKEGVPVVTWEGWKAIDKE 360 (388)
Q Consensus 317 i~a~G~~p~~~---~~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~~ 360 (388)
|+|+|++||.. ..++.+++++++.+|+.... -..+.|...|+.
T Consensus 239 i~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t-~~~~IyA~GD~~ 284 (444)
T PRK09564 239 IVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGET-SIENIYAAGDCA 284 (444)
T ss_pred EECcCCCcCHHHHHhcCccccCCCCEEECCCccc-CCCCEEEeeeEE
Confidence 99999999863 24566666666888765432 123445544443
No 55
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.92 E-value=4.9e-23 Score=207.94 Aligned_cols=243 Identities=19% Similarity=0.232 Sum_probs=159.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee-C-C--CCCC--cchhHHHHHHHHhhcCCCcEEEc
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY-G-V--APDH--PEVKNVINTFTKTGDNPRVNFYG 85 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~-g-~--~p~~--~~~~~~~~~~~~~~~~~~i~~~~ 85 (388)
..+||+||||||||++||.+|++ .+++|+|||+. .+||.+.. . . .|.. ....++.+++.+++++++++++.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar--~g~~V~liE~~-~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~ 79 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGR--AKLDTLIIEKD-DFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQ 79 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHH--CCCCEEEEecC-CCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEec
Confidence 34899999999999999999999 89999999996 67877642 1 1 1322 23467778888888888998864
Q ss_pred eEEEEEE-------eeecccccccCEEEEeeCCCCCCCCCCCCCC---CCCeeecccccccccCCCCccccCcCCCCCeE
Q psy4525 86 NICLGQD-------ISLGDLTNAYHAVVLTYGADNDKKLNIPGED---GKNIISARSFVGWYNGLPEDASLDLSLDCEEA 155 (388)
Q Consensus 86 ~~~v~~~-------~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v 155 (388)
......+ +...+....|++||+|||+.+ +.+++||.+ ..+++...... .....+++|
T Consensus 80 ~~V~~i~~~~~~~~V~~~~g~~~a~~lVlATGa~p-~~~~ipG~~~~~~~~v~~~~~~~------------~~~~~g~~V 146 (555)
T TIGR03143 80 AEVLDVDFDGDIKTIKTARGDYKTLAVLIATGASP-RKLGFPGEEEFTGRGVAYCATCD------------GEFFTGMDV 146 (555)
T ss_pred cEEEEEEecCCEEEEEecCCEEEEeEEEECCCCcc-CCCCCCCHHHhCCceEEEEeecC------------hhhcCCCEE
Confidence 4332221 222223346889999999987 578898853 12232211110 123458999
Q ss_pred EEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEeccccc
Q psy4525 156 TILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQL 235 (388)
Q Consensus 156 vVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~ 235 (388)
+|||||++|+|+|..|+ ....+|+++.|.+.+... ..
T Consensus 147 vVIGgG~~g~E~A~~L~---------------------~~g~~Vtli~~~~~~~~~---~~------------------- 183 (555)
T TIGR03143 147 FVIGGGFAAAEEAVFLT---------------------RYASKVTVIVREPDFTCA---KL------------------- 183 (555)
T ss_pred EEECCCHHHHHHHHHHH---------------------ccCCEEEEEEeCCccccC---HH-------------------
Confidence 99999999999999776 334589999998653111 00
Q ss_pred ccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEE--ec
Q psy4525 236 CGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELI--PS 313 (388)
Q Consensus 236 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l--~~ 313 (388)
+...+ ....||++++++.++++.+ ++.+..+.+.+. .+++..++ +|
T Consensus 184 ----------------~~~~~-----------~~~~gV~i~~~~~V~~i~~--~~~v~~v~~~~~---~~G~~~~~~~~~ 231 (555)
T TIGR03143 184 ----------------IAEKV-----------KNHPKIEVKFNTELKEATG--DDGLRYAKFVNN---VTGEITEYKAPK 231 (555)
T ss_pred ----------------HHHHH-----------HhCCCcEEEeCCEEEEEEc--CCcEEEEEEEEC---CCCCEEEEeccc
Confidence 00111 1146899999999999984 345554443211 12333333 47
Q ss_pred ce----EEEccccCCccCC--CCCcccCCCccccCCCC
Q psy4525 314 GI----AFRSIGYQSRCVD--SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 314 D~----Vi~a~G~~p~~~~--~~l~~~~~~gi~l~~~~ 345 (388)
|. ||+|+|++||+.. .++.+++++.+.+|+..
T Consensus 232 D~~~~~Vi~a~G~~Pn~~l~~~~l~l~~~G~I~vd~~~ 269 (555)
T TIGR03143 232 DAGTFGVFVFVGYAPSSELFKGVVELDKRGYIPTNEDM 269 (555)
T ss_pred cccceEEEEEeCCCCChhHHhhhcccCCCCeEEeCCcc
Confidence 76 9999999999852 34566655556666543
No 56
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.91 E-value=7.4e-24 Score=206.11 Aligned_cols=250 Identities=11% Similarity=0.100 Sum_probs=154.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC-Cce--eeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF-GLV--RYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICL 89 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g-g~~--~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 89 (388)
.++|||||||+||++||..|++.....+|+|+++++.+. ... ...+... ...........+++.+.+++++.++.+
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~g~~V 81 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLE-DSPQLQQVLPANWWQENNVHLHSGVTI 81 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCC-CCccccccCCHHHHHHCCCEEEcCCEE
Confidence 468999999999999999999954456899999886542 110 0000000 000000001123345578999887654
Q ss_pred -EE-----Eeeeccc-ccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCCh
Q psy4525 90 -GQ-----DISLGDL-TNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGN 162 (388)
Q Consensus 90 -~~-----~~~~~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~ 162 (388)
.. .+.+.+. ...||+||||||+.+ +.+++++...+++++.+++..... + . .....+++++|||+|+
T Consensus 82 ~~id~~~~~v~~~~g~~~~yd~LViATGs~~-~~~p~~~~~~~~v~~~~~~~da~~-l---~--~~~~~~~~vvViGgG~ 154 (396)
T PRK09754 82 KTLGRDTRELVLTNGESWHWDQLFIATGAAA-RPLPLLDALGERCFTLRHAGDAAR-L---R--EVLQPERSVVIVGAGT 154 (396)
T ss_pred EEEECCCCEEEECCCCEEEcCEEEEccCCCC-CCCCCCCcCCCCEEecCCHHHHHH-H---H--HHhhcCCeEEEECCCH
Confidence 22 2334433 348999999999998 466676666677776544331100 0 0 1122468999999999
Q ss_pred HHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhh
Q psy4525 163 VAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEAS 242 (388)
Q Consensus 163 sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~ 242 (388)
+|+|+|..|. +.+ .+||++.+.+.+.....++++.
T Consensus 155 ig~E~A~~l~--------------------~~g-~~Vtlv~~~~~~l~~~~~~~~~------------------------ 189 (396)
T PRK09754 155 IGLELAASAT--------------------QRR-CKVTVIELAATVMGRNAPPPVQ------------------------ 189 (396)
T ss_pred HHHHHHHHHH--------------------HcC-CeEEEEecCCcchhhhcCHHHH------------------------
Confidence 9999999875 233 4799999987653322222211
Q ss_pred ccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 243 ATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
+.+.+.+. +.||+++++..++++.. ++.+ .+.+ .++++++||.||+|+|+
T Consensus 190 -------~~l~~~l~------------~~GV~i~~~~~V~~i~~--~~~~-~v~l--------~~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 190 -------RYLLQRHQ------------QAGVRILLNNAIEHVVD--GEKV-ELTL--------QSGETLQADVVIYGIGI 239 (396)
T ss_pred -------HHHHHHHH------------HCCCEEEeCCeeEEEEc--CCEE-EEEE--------CCCCEEECCEEEECCCC
Confidence 11222222 57999999999999874 2222 2332 34567999999999999
Q ss_pred CCccCC-CCCcccCCCccccCCCC
Q psy4525 323 QSRCVD-SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 323 ~p~~~~-~~l~~~~~~gi~l~~~~ 345 (388)
+||+.. .+..+..++|+.+|+..
T Consensus 240 ~pn~~l~~~~gl~~~~gi~vd~~~ 263 (396)
T PRK09754 240 SANDQLAREANLDTANGIVIDEAC 263 (396)
T ss_pred ChhhHHHHhcCCCcCCCEEECCCC
Confidence 999732 12223334678877554
No 57
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.91 E-value=3.2e-23 Score=205.28 Aligned_cols=240 Identities=15% Similarity=0.185 Sum_probs=155.6
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcc----------------------------h
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPE----------------------------V 65 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~----------------------------~ 65 (388)
+|+|||+||||++||..+++ .|.+|+|+|+.+ +||.| +.||.|.+.. .
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~--~g~~V~lie~~~-~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ--NGKNVTLIDEAD-LGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDW 78 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh--CCCcEEEEECCc-ccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCH
Confidence 79999999999999999999 899999999974 66665 6777763321 1
Q ss_pred hHHHH-----------HHHHhhcCCCcEEEceEEEEE-----Eeeeccc--ccccCEEEEeeCCCCCCCCCCCCCCCCCe
Q psy4525 66 KNVIN-----------TFTKTGDNPRVNFYGNICLGQ-----DISLGDL--TNAYHAVVLTYGADNDKKLNIPGEDGKNI 127 (388)
Q Consensus 66 ~~~~~-----------~~~~~~~~~~i~~~~~~~v~~-----~~~~~~~--~~~yd~lvlAtG~~~~~~~~i~g~~~~~v 127 (388)
..+.. .....+++.+++++.+..... .+..++. ...||+||||||+.+ +.+++++.+...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p-~~~p~~~~~~~~v 157 (458)
T PRK06912 79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEP-TELPFAPFDGKWI 157 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCC-CCCCCCCCCCCeE
Confidence 11111 122234556787766544211 1222222 247999999999988 4666777655556
Q ss_pred eecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 128 ISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
++..+... ....+++++|||+|++|+|+|..|. +.+ .+|+++.|.+.
T Consensus 158 ~~~~~~~~------------~~~~~~~vvIIGgG~iG~E~A~~l~--------------------~~g-~~Vtli~~~~~ 204 (458)
T PRK06912 158 INSKHAMS------------LPSIPSSLLIVGGGVIGCEFASIYS--------------------RLG-TKVTIVEMAPQ 204 (458)
T ss_pred EcchHHhC------------ccccCCcEEEECCCHHHHHHHHHHH--------------------HcC-CeEEEEecCCC
Confidence 65544331 1123579999999999999999775 233 47999999876
Q ss_pred ccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeC
Q psy4525 208 LQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLN 287 (388)
Q Consensus 208 ~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~ 287 (388)
+...+ ++++. +.+.+.+. +.||++++++.++++..+
T Consensus 205 ll~~~-d~e~~-------------------------------~~l~~~L~------------~~GI~i~~~~~V~~i~~~ 240 (458)
T PRK06912 205 LLPGE-DEDIA-------------------------------HILREKLE------------NDGVKIFTGAALKGLNSY 240 (458)
T ss_pred cCccc-cHHHH-------------------------------HHHHHHHH------------HCCCEEEECCEEEEEEEc
Confidence 54332 12221 12222222 579999999999999753
Q ss_pred CCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 288 DNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 288 ~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
+ .. +.+.. .++.++++||.||+|+|++||... .++.++. +|+.+|++.
T Consensus 241 ~--~~--v~~~~-----~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~-~gi~Vd~~~ 293 (458)
T PRK06912 241 K--KQ--ALFEY-----EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSN-KGISVNEHM 293 (458)
T ss_pred C--CE--EEEEE-----CCceEEEEeCEEEEecCCccCCCCCCchhcCceecC-CCEEeCCCe
Confidence 2 22 22211 233357999999999999999742 2344543 567777553
No 58
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.91 E-value=4.9e-23 Score=204.36 Aligned_cols=243 Identities=17% Similarity=0.258 Sum_probs=152.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCC--------------------------cc
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDH--------------------------PE 64 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~--------------------------~~ 64 (388)
..+||+||||||||++||..|.+ .|.+|+|||+ ..+||.| +.||.|.+ ..
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~--~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~ 78 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAK--LGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKID 78 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHH--CCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccC
Confidence 34899999999999999999999 8999999999 5788877 45665532 11
Q ss_pred hhHHHHHHHH------------hhcCCCcEEEceEEEE---EEeeecccccccCEEEEeeCCCCCCCCCCCCCC---CCC
Q psy4525 65 VKNVINTFTK------------TGDNPRVNFYGNICLG---QDISLGDLTNAYHAVVLTYGADNDKKLNIPGED---GKN 126 (388)
Q Consensus 65 ~~~~~~~~~~------------~~~~~~i~~~~~~~v~---~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~---~~~ 126 (388)
.+++.++..+ .++..+++++.+.... ..+.++.....||+||+|||+. .|++||.. ..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v~~~~~~~d~lIiATGs~---~p~ipg~~~~~~~~ 155 (460)
T PRK06292 79 FKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEVNGERIEAKNIVIATGSR---VPPIPGVWLILGDR 155 (460)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEECcEEEEeCEEEEeCCCC---CCCCCCCcccCCCc
Confidence 2222222221 2234466665443211 1233333335899999999987 23456642 233
Q ss_pred eeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 127 IISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 127 v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
+++..+.. .....+++++|||+|.+|+|+|..|. +.+ .+|+++.|.+
T Consensus 156 ~~~~~~~~------------~~~~~~k~v~VIGgG~~g~E~A~~l~--------------------~~g-~~Vtli~~~~ 202 (460)
T PRK06292 156 LLTSDDAF------------ELDKLPKSLAVIGGGVIGLELGQALS--------------------RLG-VKVTVFERGD 202 (460)
T ss_pred EECchHHh------------CccccCCeEEEECCCHHHHHHHHHHH--------------------HcC-CcEEEEecCC
Confidence 44333322 11224689999999999999999776 233 5799999987
Q ss_pred cccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeee
Q psy4525 207 ALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKL 286 (388)
Q Consensus 207 ~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~ 286 (388)
.+...+ ++++. +.+.+.+ .+. |+++++..++++..
T Consensus 203 ~~l~~~-d~~~~-------------------------------~~~~~~l------------~~~-I~i~~~~~v~~i~~ 237 (460)
T PRK06292 203 RILPLE-DPEVS-------------------------------KQAQKIL------------SKE-FKIKLGAKVTSVEK 237 (460)
T ss_pred CcCcch-hHHHH-------------------------------HHHHHHH------------hhc-cEEEcCCEEEEEEE
Confidence 653321 12211 1111222 246 99999999999975
Q ss_pred CCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 287 NDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 287 ~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
+++ ..+++.. ..++++++++|.|++|+|++||... .++.+++++.+.+|+..
T Consensus 238 ~~~---~~v~~~~----~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~ 294 (460)
T PRK06292 238 SGD---EKVEELE----KGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHT 294 (460)
T ss_pred cCC---ceEEEEE----cCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCc
Confidence 432 1222210 1345568999999999999999852 34556655556676554
No 59
>PRK14727 putative mercuric reductase; Provisional
Probab=99.91 E-value=2.6e-23 Score=206.82 Aligned_cols=243 Identities=16% Similarity=0.139 Sum_probs=155.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcc-------------------------
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPE------------------------- 64 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~------------------------- 64 (388)
..++|++|||+||||+++|..+++ .|.+|+++|+.+.+||.| +.||.|....
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~--~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 91 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAE--HGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSI 91 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCcc
Confidence 456899999999999999999999 899999999988899988 5576653210
Q ss_pred -hhHHH-------HH-----HHHhhcCC-CcEEEceEEEE-----EEeeeccc---ccccCEEEEeeCCCCCCCCCCCCC
Q psy4525 65 -VKNVI-------NT-----FTKTGDNP-RVNFYGNICLG-----QDISLGDL---TNAYHAVVLTYGADNDKKLNIPGE 122 (388)
Q Consensus 65 -~~~~~-------~~-----~~~~~~~~-~i~~~~~~~v~-----~~~~~~~~---~~~yd~lvlAtG~~~~~~~~i~g~ 122 (388)
...+. .. +...++.. +++++.+...- ..+...+. ...||+||||||+.+ +.|++||.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p-~~p~i~G~ 170 (479)
T PRK14727 92 DRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTP-TIPPIPGL 170 (479)
T ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCC-CCCCCCCc
Confidence 01111 11 12223323 67766443221 11222232 247999999999988 57889986
Q ss_pred CCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEE
Q psy4525 123 DGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLV 202 (388)
Q Consensus 123 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i 202 (388)
+...+++..+.. .....+++++|||+|++|+|+|..|. +.+ .+|+++
T Consensus 171 ~~~~~~~~~~~l------------~~~~~~k~vvVIGgG~iG~E~A~~l~--------------------~~G-~~Vtlv 217 (479)
T PRK14727 171 MDTPYWTSTEAL------------FSDELPASLTVIGSSVVAAEIAQAYA--------------------RLG-SRVTIL 217 (479)
T ss_pred CccceecchHHh------------ccccCCCeEEEECCCHHHHHHHHHHH--------------------HcC-CEEEEE
Confidence 533333222211 11123589999999999999999775 233 579999
Q ss_pred eecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcce
Q psy4525 203 GRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPT 282 (388)
Q Consensus 203 ~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~ 282 (388)
.|. .+...+ ++++. +.+.+.+ .+.||++++++.++
T Consensus 218 ~~~-~~l~~~-d~~~~-------------------------------~~l~~~L------------~~~GV~i~~~~~V~ 252 (479)
T PRK14727 218 ARS-TLLFRE-DPLLG-------------------------------ETLTACF------------EKEGIEVLNNTQAS 252 (479)
T ss_pred EcC-CCCCcc-hHHHH-------------------------------HHHHHHH------------HhCCCEEEcCcEEE
Confidence 875 332221 12211 1222222 26799999999999
Q ss_pred eeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 283 EFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 283 ~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
++..++ +.+ .+. +.++ ++++|.||+|+|+.||+.. .++.+++++++.+|+..
T Consensus 253 ~i~~~~-~~~-~v~--------~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~ 309 (479)
T PRK14727 253 LVEHDD-NGF-VLT--------TGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAM 309 (479)
T ss_pred EEEEeC-CEE-EEE--------EcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCe
Confidence 987543 221 222 1222 5899999999999999852 34566666668887654
No 60
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.91 E-value=3.8e-23 Score=205.56 Aligned_cols=247 Identities=13% Similarity=0.171 Sum_probs=155.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcC------CCCCCCce-eeCCCCCCcc---------------------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEK------LPVPFGLV-RYGVAPDHPE--------------------- 64 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~------~~~~gg~~-~~g~~p~~~~--------------------- 64 (388)
.+|++||||||||++||.++++ .|.+|+|+|+ ...+||.| +++|.|....
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~--~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~ 81 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQ--LGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHV 81 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHh--CCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccC
Confidence 5899999999999999999999 8999999998 34678877 6677654210
Q ss_pred ------hhH-----------HHHHHHHhhcCCCcEEEceEEEEE-------Eeeecc--c-ccccCEEEEeeCCCCCCCC
Q psy4525 65 ------VKN-----------VINTFTKTGDNPRVNFYGNICLGQ-------DISLGD--L-TNAYHAVVLTYGADNDKKL 117 (388)
Q Consensus 65 ------~~~-----------~~~~~~~~~~~~~i~~~~~~~v~~-------~~~~~~--~-~~~yd~lvlAtG~~~~~~~ 117 (388)
... +...+...++..+++++.+..... .+.+.. . ...||+||||||+.+. .+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~-~~ 160 (475)
T PRK06327 82 DGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPR-HL 160 (475)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCC-CC
Confidence 000 111223344556787775543211 133321 2 3489999999999873 33
Q ss_pred CCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCc
Q psy4525 118 NIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIK 197 (388)
Q Consensus 118 ~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (388)
+..+.+...+++..+.. .....+++|+|||+|.+|+|+|..|. +. ..
T Consensus 161 p~~~~~~~~~~~~~~~~------------~~~~~~~~vvVvGgG~~g~E~A~~l~--------------------~~-g~ 207 (475)
T PRK06327 161 PGVPFDNKIILDNTGAL------------NFTEVPKKLAVIGAGVIGLELGSVWR--------------------RL-GA 207 (475)
T ss_pred CCCCCCCceEECcHHHh------------cccccCCeEEEECCCHHHHHHHHHHH--------------------Hc-CC
Confidence 22222223344333322 11123689999999999999999775 23 35
Q ss_pred EEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEe
Q psy4525 198 SVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIF 277 (388)
Q Consensus 198 ~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~ 277 (388)
+|+++.|++.+...+. +++. ..+.+.+. +.||++++
T Consensus 208 ~Vtli~~~~~~l~~~d-~~~~-------------------------------~~~~~~l~------------~~gi~i~~ 243 (475)
T PRK06327 208 EVTILEALPAFLAAAD-EQVA-------------------------------KEAAKAFT------------KQGLDIHL 243 (475)
T ss_pred eEEEEeCCCccCCcCC-HHHH-------------------------------HHHHHHHH------------HcCcEEEe
Confidence 7999999876543221 2221 11222222 57999999
Q ss_pred cCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 278 LRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 278 ~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
++.++++..++ +.+ .+.+.++ .++.+++++|.|++|+|++||+.. .++.+++++.+.+|+..
T Consensus 244 ~~~v~~i~~~~-~~v-~v~~~~~----~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~ 310 (475)
T PRK06327 244 GVKIGEIKTGG-KGV-SVAYTDA----DGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHC 310 (475)
T ss_pred CcEEEEEEEcC-CEE-EEEEEeC----CCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCC
Confidence 99999998643 222 3443221 233367999999999999999752 34556665567777653
No 61
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.91 E-value=3.8e-23 Score=205.31 Aligned_cols=242 Identities=17% Similarity=0.215 Sum_probs=155.2
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcch--hHHHHH-------------------
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPEV--KNVINT------------------- 71 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~~--~~~~~~------------------- 71 (388)
+||+||||||||+++|..|++ .|.+|+|||+ +.+||.| ++||.|..... .++...
T Consensus 2 yDvvVIG~G~aGl~aA~~la~--~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 78 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQ--LGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWE 78 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHh--CCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHH
Confidence 799999999999999999999 8999999999 7889987 66776653210 011111
Q ss_pred ----------------HHHhhcCCCcEEEceEEEEE-----Eeeecc--cccccCEEEEeeCCCCCCCCCCC-CCCCCCe
Q psy4525 72 ----------------FTKTGDNPRVNFYGNICLGQ-----DISLGD--LTNAYHAVVLTYGADNDKKLNIP-GEDGKNI 127 (388)
Q Consensus 72 ----------------~~~~~~~~~i~~~~~~~v~~-----~~~~~~--~~~~yd~lvlAtG~~~~~~~~i~-g~~~~~v 127 (388)
+...+++.+++++.+..... .+...+ ....||+||+|||+.+ +.+++| +.+...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p-~~~~~~~~~~~~~~ 157 (461)
T TIGR01350 79 KMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRP-RSLPGPFDFDGEVV 157 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCC-CCCCCCCCCCCceE
Confidence 11233445677766554321 122222 1347999999999987 466665 3332234
Q ss_pred eecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 128 ISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
++..+.. .....+++++|||+|.+|+|+|..|. +.+ .+|+++.|.+.
T Consensus 158 ~~~~~~~------------~~~~~~~~vvViGgG~~g~e~A~~l~--------------------~~g-~~Vtli~~~~~ 204 (461)
T TIGR01350 158 ITSTGAL------------NLKEVPESLVIIGGGVIGIEFASIFA--------------------SLG-SKVTVIEMLDR 204 (461)
T ss_pred EcchHHh------------ccccCCCeEEEECCCHHHHHHHHHHH--------------------HcC-CcEEEEEcCCC
Confidence 4443332 11123689999999999999999775 233 47999999876
Q ss_pred ccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeC
Q psy4525 208 LQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLN 287 (388)
Q Consensus 208 ~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~ 287 (388)
+... .++++. +.+.+.+. +.||++++++.++++..+
T Consensus 205 ~l~~-~~~~~~-------------------------------~~~~~~l~------------~~gi~i~~~~~v~~i~~~ 240 (461)
T TIGR01350 205 ILPG-EDAEVS-------------------------------KVVAKALK------------KKGVKILTNTKVTAVEKN 240 (461)
T ss_pred CCCC-CCHHHH-------------------------------HHHHHHHH------------HcCCEEEeCCEEEEEEEe
Confidence 5322 111211 11222222 578999999999998764
Q ss_pred CCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCC
Q psy4525 288 DNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKE 344 (388)
Q Consensus 288 ~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~ 344 (388)
+ +.+. ++.. .++.+++++|.||+|+|++||... .++.++..+.+.+|+.
T Consensus 241 ~-~~v~-v~~~------~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~ 294 (461)
T TIGR01350 241 D-DQVV-YENK------GGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEY 294 (461)
T ss_pred C-CEEE-EEEe------CCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCC
Confidence 3 3332 3321 122357999999999999999851 3455565555777654
No 62
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.91 E-value=5.2e-23 Score=204.30 Aligned_cols=244 Identities=14% Similarity=0.210 Sum_probs=152.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcch--hHHHHHHHHh--------------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPEV--KNVINTFTKT-------------- 75 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~~--~~~~~~~~~~-------------- 75 (388)
.+||+||||||||++||..+++ .|.+|+|||+. .+||.+ +.||.|..... .++...+...
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~--~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~ 80 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQ--LGLKTAVVEKK-YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDY 80 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEecC-CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCH
Confidence 4799999999999999999999 89999999986 667776 67887764321 1122221111
Q ss_pred ---------------------hcCCCcEEEceEEE--E-EEeee--ccc---ccccCEEEEeeCCCCCCCCCCCCCCC-C
Q psy4525 76 ---------------------GDNPRVNFYGNICL--G-QDISL--GDL---TNAYHAVVLTYGADNDKKLNIPGEDG-K 125 (388)
Q Consensus 76 ---------------------~~~~~i~~~~~~~v--~-~~~~~--~~~---~~~yd~lvlAtG~~~~~~~~i~g~~~-~ 125 (388)
++..+++.+.+... . ..+.+ .+. ...||+||||||+.+. . +||.+. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~-~--~pg~~~~~ 157 (466)
T PRK07818 81 GAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTR-L--LPGTSLSE 157 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCC-C--CCCCCCCC
Confidence 11234444332211 1 11222 222 2489999999999874 3 255432 3
Q ss_pred CeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeec
Q psy4525 126 NIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRR 205 (388)
Q Consensus 126 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~ 205 (388)
.+++..+.. .....+++++|||+|.+|+|+|..|+ +.+ .+|+++.+.
T Consensus 158 ~v~~~~~~~------------~~~~~~~~vvVIGgG~ig~E~A~~l~--------------------~~G-~~Vtlv~~~ 204 (466)
T PRK07818 158 NVVTYEEQI------------LSRELPKSIVIAGAGAIGMEFAYVLK--------------------NYG-VDVTIVEFL 204 (466)
T ss_pred cEEchHHHh------------ccccCCCeEEEECCcHHHHHHHHHHH--------------------HcC-CeEEEEecC
Confidence 344333211 11123689999999999999999776 233 479999988
Q ss_pred CcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeee
Q psy4525 206 GALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFK 285 (388)
Q Consensus 206 ~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~ 285 (388)
+.+...+. +++. ..+.+.+. +.||++++++.++++.
T Consensus 205 ~~~l~~~d-~~~~-------------------------------~~l~~~l~------------~~gV~i~~~~~v~~i~ 240 (466)
T PRK07818 205 DRALPNED-AEVS-------------------------------KEIAKQYK------------KLGVKILTGTKVESID 240 (466)
T ss_pred CCcCCccC-HHHH-------------------------------HHHHHHHH------------HCCCEEEECCEEEEEE
Confidence 76543321 2211 12222222 6799999999999998
Q ss_pred eCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 286 LNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 286 ~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
.++ +. ..+.+.. ..++.+++++|.||+|+|++||+.. .++.++.++.+.+|+..
T Consensus 241 ~~~-~~-~~v~~~~----~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~ 299 (466)
T PRK07818 241 DNG-SK-VTVTVSK----KDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYM 299 (466)
T ss_pred EeC-Ce-EEEEEEe----cCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCc
Confidence 532 22 2333321 1233357999999999999999842 34556555557777553
No 63
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.91 E-value=1.1e-22 Score=202.09 Aligned_cols=244 Identities=14% Similarity=0.138 Sum_probs=155.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC--------CCCCce-eeCCCCCCcch------------------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP--------VPFGLV-RYGVAPDHPEV------------------ 65 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~--------~~gg~~-~~g~~p~~~~~------------------ 65 (388)
.+||+|||+||+|+.+|..+++ .|.+|+++|+.. .+||.| +.||.|.....
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~--~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~ 79 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAAD--YGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWN 79 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcc
Confidence 4799999999999999999999 899999999731 478887 67888754210
Q ss_pred ---------h-----------HHHHHHHHhhcCCCcEEEceEEEEE---Eeeec--cc---ccccCEEEEeeCCCCCCCC
Q psy4525 66 ---------K-----------NVINTFTKTGDNPRVNFYGNICLGQ---DISLG--DL---TNAYHAVVLTYGADNDKKL 117 (388)
Q Consensus 66 ---------~-----------~~~~~~~~~~~~~~i~~~~~~~v~~---~~~~~--~~---~~~yd~lvlAtG~~~~~~~ 117 (388)
. .+...+...++..+++++.+...-. .+.+. +. ...||+||||||+.+ +.|
T Consensus 80 ~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p-~~p 158 (484)
T TIGR01438 80 VEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERP-RYP 158 (484)
T ss_pred cCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCC-CCC
Confidence 0 0111223345667787775443211 12221 21 248999999999988 578
Q ss_pred CCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCc
Q psy4525 118 NIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIK 197 (388)
Q Consensus 118 ~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (388)
++||.+. ..++..++.. ....+++++|||+|++|+|+|..|+ +.+ .
T Consensus 159 ~ipG~~~-~~~~~~~~~~------------~~~~~~~vvIIGgG~iG~E~A~~l~--------------------~~G-~ 204 (484)
T TIGR01438 159 GIPGAKE-LCITSDDLFS------------LPYCPGKTLVVGASYVALECAGFLA--------------------GIG-L 204 (484)
T ss_pred CCCCccc-eeecHHHhhc------------ccccCCCEEEECCCHHHHHHHHHHH--------------------HhC-C
Confidence 8988642 2233333221 1123578999999999999999876 233 5
Q ss_pred EEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEe
Q psy4525 198 SVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIF 277 (388)
Q Consensus 198 ~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~ 277 (388)
+|+++.|. .+... .++++. ..+.+.|. +.||++++
T Consensus 205 ~Vtli~~~-~~l~~-~d~~~~-------------------------------~~l~~~L~------------~~gV~i~~ 239 (484)
T TIGR01438 205 DVTVMVRS-ILLRG-FDQDCA-------------------------------NKVGEHME------------EHGVKFKR 239 (484)
T ss_pred cEEEEEec-ccccc-cCHHHH-------------------------------HHHHHHHH------------HcCCEEEe
Confidence 79999874 33222 222222 12222222 57999999
Q ss_pred cCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCC-CccccCCCC
Q psy4525 278 LRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEK-SCTVIPKEG 345 (388)
Q Consensus 278 ~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~-~gi~l~~~~ 345 (388)
+..++++...+ +. ..+++.++ ++.+++++|.|++|+|++||+.. .++.+++. +++.+|+..
T Consensus 240 ~~~v~~v~~~~-~~-~~v~~~~~-----~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~ 306 (484)
T TIGR01438 240 QFVPIKVEQIE-AK-VKVTFTDS-----TNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEE 306 (484)
T ss_pred CceEEEEEEcC-Ce-EEEEEecC-----CcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCc
Confidence 99999887543 22 23443221 11357999999999999999842 33445543 447776543
No 64
>KOG0404|consensus
Probab=99.91 E-value=7.4e-23 Score=173.76 Aligned_cols=241 Identities=20% Similarity=0.312 Sum_probs=176.4
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC----CCCCceee--------CCCCCCcchhHHHHHHHHhhcCCCc
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP----VPFGLVRY--------GVAPDHPEVKNVINTFTKTGDNPRV 81 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~----~~gg~~~~--------g~~p~~~~~~~~~~~~~~~~~~~~i 81 (388)
.+|+|||+|||+..||.++.+ ..++.++||-.. .+||.+.. |+ |+.....++.+.++++..++|.
T Consensus 9 e~v~IiGSGPAa~tAAiYaar--aelkPllfEG~~~~~i~pGGQLtTTT~veNfPGF-Pdgi~G~~l~d~mrkqs~r~Gt 85 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAAR--AELKPLLFEGMMANGIAPGGQLTTTTDVENFPGF-PDGITGPELMDKMRKQSERFGT 85 (322)
T ss_pred eeEEEEccCchHHHHHHHHhh--cccCceEEeeeeccCcCCCceeeeeeccccCCCC-CcccccHHHHHHHHHHHHhhcc
Confidence 589999999999999999999 899999999542 35777732 33 4444678999999999999999
Q ss_pred EEEceEEEEEEee-------ecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCcccc---CcCCC
Q psy4525 82 NFYGNICLGQDIS-------LGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASL---DLSLD 151 (388)
Q Consensus 82 ~~~~~~~v~~~~~-------~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~ 151 (388)
+++..+.-..+++ .+......|.+|+|||+.. +.+.+||.. +-..|..+.+.|.-+ ...+.
T Consensus 86 ~i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGAsA-kRl~~pg~g--------e~~fWqrGiSaCAVCDGaapifr 156 (322)
T KOG0404|consen 86 EIITETVSKVDLSSKPFKLWTDARPVTADAVILATGASA-KRLHLPGEG--------EGEFWQRGISACAVCDGAAPIFR 156 (322)
T ss_pred eeeeeehhhccccCCCeEEEecCCceeeeeEEEecccce-eeeecCCCC--------cchHHhcccchhhcccCcchhhc
Confidence 8887665332222 2223347899999999998 688888863 111233455555444 45578
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEec
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFR 231 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~ 231 (388)
+|..+|||||.+++|-|..|. .-+++|++++|++.+..+
T Consensus 157 nk~laVIGGGDsA~EEA~fLt---------------------kyaskVyii~Rrd~fRAs-------------------- 195 (322)
T KOG0404|consen 157 NKPLAVIGGGDSAMEEALFLT---------------------KYASKVYIIHRRDHFRAS-------------------- 195 (322)
T ss_pred CCeeEEEcCcHHHHHHHHHHH---------------------hhccEEEEEEEhhhhhHH--------------------
Confidence 999999999999999999886 445789999999865432
Q ss_pred ccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEE
Q psy4525 232 NEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELI 311 (388)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l 311 (388)
..|+... ....+|++++++...+..++ .+.+..+.+.+ +.+++...+
T Consensus 196 ----------------------~~Mq~ra-------~~npnI~v~~nt~~~ea~gd-~~~l~~l~ikn---~~tge~~dl 242 (322)
T KOG0404|consen 196 ----------------------KIMQQRA-------EKNPNIEVLYNTVAVEALGD-GKLLNGLRIKN---VKTGEETDL 242 (322)
T ss_pred ----------------------HHHHHHH-------hcCCCeEEEechhhhhhccC-cccccceEEEe---cccCccccc
Confidence 1111111 23578999999999999875 36677777754 357888899
Q ss_pred ecceEEEccccCCccC--CCCCcccCCCcccc
Q psy4525 312 PSGIAFRSIGYQSRCV--DSDIPFNEKSCTVI 341 (388)
Q Consensus 312 ~~D~Vi~a~G~~p~~~--~~~l~~~~~~gi~l 341 (388)
+++-+++++|..|++. ...+.+|. .|.++
T Consensus 243 ~v~GlFf~IGH~Pat~~l~gqve~d~-~GYi~ 273 (322)
T KOG0404|consen 243 PVSGLFFAIGHSPATKFLKGQVELDE-DGYIV 273 (322)
T ss_pred ccceeEEEecCCchhhHhcCceeecc-CceEE
Confidence 9999999999999984 23455554 34443
No 65
>KOG0399|consensus
Probab=99.91 E-value=1.3e-23 Score=210.91 Aligned_cols=156 Identities=28% Similarity=0.429 Sum_probs=134.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
+..++|+|||+|||||+||-.|-+ .|..|+++||.+.+||++.||+ |.....+.+.++..+.+.+.||+|..|+.++
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk--~gh~v~vyer~dr~ggll~ygi-pnmkldk~vv~rrv~ll~~egi~f~tn~eig 1859 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNK--AGHTVTVYERSDRVGGLLMYGI-PNMKLDKFVVQRRVDLLEQEGIRFVTNTEIG 1859 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhh--cCcEEEEEEecCCcCceeeecC-CccchhHHHHHHHHHHHHhhCceEEeecccc
Confidence 457999999999999999999999 9999999999999999999999 8888888899999999999999999999999
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeeccccccccc-CCCC--ccccCcCCCCCeEEEEcCChHHHHH
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYN-GLPE--DASLDLSLDCEEATILGQGNVAMDV 167 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~-~~~~--~~~~~~~~~~~~vvVIGgG~sg~e~ 167 (388)
+++..+.....+|++|+|+|++.+|.+++||.+..+|.-+-+|+..-. .+-+ ..-.....++|+|+|||||.+|-|+
T Consensus 1860 k~vs~d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dc 1939 (2142)
T KOG0399|consen 1860 KHVSLDELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDC 1939 (2142)
T ss_pred ccccHHHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccc
Confidence 999998888899999999999988999999999999977777763311 1111 1111334568999999999999998
Q ss_pred HH
Q psy4525 168 AR 169 (388)
Q Consensus 168 a~ 169 (388)
..
T Consensus 1940 ig 1941 (2142)
T KOG0399|consen 1940 IG 1941 (2142)
T ss_pred cc
Confidence 77
No 66
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.91 E-value=1.6e-23 Score=205.27 Aligned_cols=265 Identities=14% Similarity=0.147 Sum_probs=160.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC-ceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG-LVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICL 89 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg-~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 89 (388)
..+++|||||||+||+.+|..|.+ .+.+|+|||+++.+.- .+.+.........+++...+...+...+++++.+...
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~--~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~ 85 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDP--KKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRAVVY 85 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCc--CCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEEEEE
Confidence 456899999999999999999976 6899999999876421 1111111112234556656677777778888776554
Q ss_pred EEE-----eee----------ccc-ccccCEEEEeeCCCCCCCCCCCCCCCCCeeeccccccccc---CCCCc---c---
Q psy4525 90 GQD-----ISL----------GDL-TNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYN---GLPED---A--- 144 (388)
Q Consensus 90 ~~~-----~~~----------~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~---~~~~~---~--- 144 (388)
..+ +.+ .+. ...||+||||||+.+ ..+++||... +++....+..... .+..+ .
T Consensus 86 ~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~-~~~~ipG~~e-~~~~~~~~~~a~~~~~~l~~~~~~~~~~ 163 (424)
T PTZ00318 86 DVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARP-NTFNIPGVEE-RAFFLKEVNHARGIRKRIVQCIERASLP 163 (424)
T ss_pred EEEcCCCEEEEecccccccccCCceEecCCEEEECCCccc-CCCCCCCHHH-cCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 432 333 122 348999999999998 4778888642 3332222221000 00000 0
Q ss_pred cc--CcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhc
Q psy4525 145 SL--DLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTK 222 (388)
Q Consensus 145 ~~--~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~ 222 (388)
.. ......++++|||||.+|+|+|..|+...... . ......+ ....+|+++++.+.+...+. ++++
T Consensus 164 ~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~----~-~~~~~~~--~~~~~Vtlv~~~~~ll~~~~-~~~~---- 231 (424)
T PTZ00318 164 TTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDD----V-RNLNPEL--VEECKVTVLEAGSEVLGSFD-QALR---- 231 (424)
T ss_pred CCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHH----H-Hhhhhcc--cccCEEEEEcCCCcccccCC-HHHH----
Confidence 00 00112358999999999999999886100000 0 0000000 01357999999876543322 1221
Q ss_pred CCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCcc
Q psy4525 223 LPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQA 302 (388)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~ 302 (388)
+.+.+.|. +.||++++++.++++.. + .+.+
T Consensus 232 ---------------------------~~~~~~L~------------~~gV~v~~~~~v~~v~~---~---~v~~----- 261 (424)
T PTZ00318 232 ---------------------------KYGQRRLR------------RLGVDIRTKTAVKEVLD---K---EVVL----- 261 (424)
T ss_pred ---------------------------HHHHHHHH------------HCCCEEEeCCeEEEEeC---C---EEEE-----
Confidence 22223332 68999999999999863 2 2322
Q ss_pred ccCCceeEEecceEEEccccCCccCC--CCCcccCCCccccCCC
Q psy4525 303 LVTEDTELIPSGIAFRSIGYQSRCVD--SDIPFNEKSCTVIPKE 344 (388)
Q Consensus 303 ~~~~~~~~l~~D~Vi~a~G~~p~~~~--~~l~~~~~~gi~l~~~ 344 (388)
.+++++++|+|||++|++|+.+. .++++++++++.+|+.
T Consensus 262 ---~~g~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~I~Vd~~ 302 (424)
T PTZ00318 262 ---KDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDH 302 (424)
T ss_pred ---CCCCEEEccEEEEccCCCCcchhhhcCCcccCCCcEEeCCC
Confidence 34568999999999999998753 3456666677888765
No 67
>PRK14694 putative mercuric reductase; Provisional
Probab=99.90 E-value=1.7e-22 Score=200.67 Aligned_cols=240 Identities=13% Similarity=0.142 Sum_probs=152.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcc--------------------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPE-------------------------- 64 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~-------------------------- 64 (388)
..+||+||||||||+++|..|++ .|.+|+|||+. .+||.| +.||.|....
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~--~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~ 81 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATE--RGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVV 81 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHh--CCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCcc
Confidence 45899999999999999999999 89999999986 688877 5576554310
Q ss_pred -hhHHHHHH------------HHhhcC-CCcEEEceEEEEE-----Eeeeccc---ccccCEEEEeeCCCCCCCCCCCCC
Q psy4525 65 -VKNVINTF------------TKTGDN-PRVNFYGNICLGQ-----DISLGDL---TNAYHAVVLTYGADNDKKLNIPGE 122 (388)
Q Consensus 65 -~~~~~~~~------------~~~~~~-~~i~~~~~~~v~~-----~~~~~~~---~~~yd~lvlAtG~~~~~~~~i~g~ 122 (388)
...+..+. ...+.. .+++++.+..... .+++.+. ...||+||||||+.+ +.|++||.
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p-~~p~i~G~ 160 (468)
T PRK14694 82 DRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARP-AEPPVPGL 160 (468)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCC-CCCCCCCC
Confidence 11111111 111323 3677776654321 2333333 248999999999988 58889987
Q ss_pred CCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEE
Q psy4525 123 DGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLV 202 (388)
Q Consensus 123 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i 202 (388)
+...+++..+.. .....+++++|||+|++|+|+|..|. +.+ .+|+++
T Consensus 161 ~~~~~~~~~~~~------------~l~~~~~~vvViG~G~~G~E~A~~l~--------------------~~g-~~Vtlv 207 (468)
T PRK14694 161 AETPYLTSTSAL------------ELDHIPERLLVIGASVVALELAQAFA--------------------RLG-SRVTVL 207 (468)
T ss_pred CCCceEcchhhh------------chhcCCCeEEEECCCHHHHHHHHHHH--------------------HcC-CeEEEE
Confidence 643333332211 11123689999999999999999776 233 579999
Q ss_pred eecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcce
Q psy4525 203 GRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPT 282 (388)
Q Consensus 203 ~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~ 282 (388)
.+. .+...+ ++++. +.+.+.+. +.||+++++..+.
T Consensus 208 ~~~-~~l~~~-~~~~~-------------------------------~~l~~~l~------------~~GI~v~~~~~v~ 242 (468)
T PRK14694 208 ARS-RVLSQE-DPAVG-------------------------------EAIEAAFR------------REGIEVLKQTQAS 242 (468)
T ss_pred ECC-CCCCCC-CHHHH-------------------------------HHHHHHHH------------hCCCEEEeCCEEE
Confidence 864 322111 11211 12222222 6799999999999
Q ss_pred eeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 283 EFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 283 ~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
++..++ +. ..+. +++ .++++|.||+|+|.+||+.. .++.. .++.+.+|++.
T Consensus 243 ~i~~~~-~~-~~v~--------~~~-~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~ 298 (468)
T PRK14694 243 EVDYNG-RE-FILE--------TNA-GTLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHL 298 (468)
T ss_pred EEEEcC-CE-EEEE--------ECC-CEEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCc
Confidence 987543 22 2222 122 25999999999999999853 12333 23346676553
No 68
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.90 E-value=2.1e-23 Score=205.38 Aligned_cols=243 Identities=14% Similarity=0.200 Sum_probs=152.2
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCc-----chhHHHHH-HHHhhcCCCcEEEceE
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHP-----EVKNVINT-FTKTGDNPRVNFYGNI 87 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~-----~~~~~~~~-~~~~~~~~~i~~~~~~ 87 (388)
++|||||||+||++||..|++..++.+|+|||+++.++ ..+++. |.+. ..++.... ...+.++.+++++.++
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~-~~~~~l-p~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~ 79 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS-FANCAL-PYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYH 79 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc-cccCCc-chhhcCccCCHHHcccCCHHHHHHhCCCEEEeCC
Confidence 48999999999999999999865689999999997654 222222 2221 11122211 1233455788887655
Q ss_pred EEEE-E-----eeeccc------ccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeE
Q psy4525 88 CLGQ-D-----ISLGDL------TNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEA 155 (388)
Q Consensus 88 ~v~~-~-----~~~~~~------~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v 155 (388)
.|.. + +.+.+. ...||+||||||+.+ +.++++ .+++++..++..... .........++++
T Consensus 80 ~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~-~~~~~~---~~~~~~~~~~~~~~~----l~~~l~~~~~~~v 151 (438)
T PRK13512 80 EVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASA-NSLGFE---SDITFTLRNLEDTDA----IDQFIKANQVDKA 151 (438)
T ss_pred EEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCC-CCCCCC---CCCeEEecCHHHHHH----HHHHHhhcCCCEE
Confidence 5422 2 333221 237999999999988 355543 345665544331100 0000011236899
Q ss_pred EEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEeccccc
Q psy4525 156 TILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQL 235 (388)
Q Consensus 156 vVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~ 235 (388)
+|||+|.+|+|+|..|. +.+ .+|+++.+++.+...+. +++.
T Consensus 152 vViGgG~ig~E~A~~l~--------------------~~g-~~Vtli~~~~~l~~~~d-~~~~----------------- 192 (438)
T PRK13512 152 LVVGAGYISLEVLENLY--------------------ERG-LHPTLIHRSDKINKLMD-ADMN----------------- 192 (438)
T ss_pred EEECCCHHHHHHHHHHH--------------------hCC-CcEEEEecccccchhcC-HHHH-----------------
Confidence 99999999999999876 233 57999999876532211 1111
Q ss_pred ccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecce
Q psy4525 236 CGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGI 315 (388)
Q Consensus 236 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~ 315 (388)
+.+.+.+. +.||+++++..++++.. . .+.+ .+++.++||.
T Consensus 193 --------------~~l~~~l~------------~~gI~i~~~~~v~~i~~---~---~v~~--------~~g~~~~~D~ 232 (438)
T PRK13512 193 --------------QPILDELD------------KREIPYRLNEEIDAING---N---EVTF--------KSGKVEHYDM 232 (438)
T ss_pred --------------HHHHHHHH------------hcCCEEEECCeEEEEeC---C---EEEE--------CCCCEEEeCE
Confidence 12222222 67999999999999862 1 2333 2345789999
Q ss_pred EEEccccCCccC---CCCCcccCCCccccCCCC
Q psy4525 316 AFRSIGYQSRCV---DSDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 316 Vi~a~G~~p~~~---~~~l~~~~~~gi~l~~~~ 345 (388)
|++|+|++||+. ..++.+++++.+.+|+..
T Consensus 233 vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~ 265 (438)
T PRK13512 233 IIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKF 265 (438)
T ss_pred EEECcCCCcChHHHHhcCcccCCCCcEEECCCc
Confidence 999999999973 245666665557777653
No 69
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.90 E-value=2.1e-22 Score=200.79 Aligned_cols=239 Identities=15% Similarity=0.212 Sum_probs=149.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC--------CCCCce-eeCCCCCCc--------------------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP--------VPFGLV-RYGVAPDHP-------------------- 63 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~--------~~gg~~-~~g~~p~~~-------------------- 63 (388)
.+||+||||||||++||..+.+ .|.+|+|+|+.. .+||.| ++||.|...
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~--~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~ 82 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAA--HGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGW 82 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHh--CCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCC
Confidence 5899999999999999999999 899999999631 378886 778877421
Q ss_pred ------chhHHHHHHHHhh-----------cCCCcEEEceEEEE---EEeeecc----cccccCEEEEeeCCCCCCCCCC
Q psy4525 64 ------EVKNVINTFTKTG-----------DNPRVNFYGNICLG---QDISLGD----LTNAYHAVVLTYGADNDKKLNI 119 (388)
Q Consensus 64 ------~~~~~~~~~~~~~-----------~~~~i~~~~~~~v~---~~~~~~~----~~~~yd~lvlAtG~~~~~~~~i 119 (388)
...++.++..... +..+++++.+...- ..+.+.+ ....||+||||||+.+..++++
T Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~~i 162 (499)
T PTZ00052 83 KTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDV 162 (499)
T ss_pred CCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCCCCCCCCCC
Confidence 1123333333222 23455555432211 1122211 1248999999999998423358
Q ss_pred CCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEE
Q psy4525 120 PGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSV 199 (388)
Q Consensus 120 ~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V 199 (388)
||.+. ..++..++.. ....+++++|||+|++|+|+|..|+ ..+ .+|
T Consensus 163 ~G~~~-~~~~~~~~~~------------~~~~~~~vvIIGgG~iG~E~A~~l~--------------------~~G-~~V 208 (499)
T PTZ00052 163 PGAKE-YSITSDDIFS------------LSKDPGKTLIVGASYIGLETAGFLN--------------------ELG-FDV 208 (499)
T ss_pred CCccc-eeecHHHHhh------------hhcCCCeEEEECCCHHHHHHHHHHH--------------------HcC-CcE
Confidence 87542 1233333221 1123579999999999999999876 233 579
Q ss_pred EEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecC
Q psy4525 200 NLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLR 279 (388)
Q Consensus 200 ~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 279 (388)
|++.+. .+...+ ++++. +.+.+.+. +.||+++++.
T Consensus 209 tli~~~-~~l~~~-d~~~~-------------------------------~~l~~~l~------------~~GV~i~~~~ 243 (499)
T PTZ00052 209 TVAVRS-IPLRGF-DRQCS-------------------------------EKVVEYMK------------EQGTLFLEGV 243 (499)
T ss_pred EEEEcC-cccccC-CHHHH-------------------------------HHHHHHHH------------HcCCEEEcCC
Confidence 999874 322221 22221 22222222 5789999999
Q ss_pred cceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccC
Q psy4525 280 SPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIP 342 (388)
Q Consensus 280 ~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~ 342 (388)
.+.++...+ +. ..+.+ .+++++++|.|++|+|++||+.. .++.+++++.++++
T Consensus 244 ~v~~v~~~~-~~-~~v~~--------~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~ 301 (499)
T PTZ00052 244 VPINIEKMD-DK-IKVLF--------SDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAP 301 (499)
T ss_pred eEEEEEEcC-Ce-EEEEE--------CCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeC
Confidence 999887543 22 23433 23457899999999999999852 23455554444444
No 70
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.90 E-value=6.7e-23 Score=197.39 Aligned_cols=251 Identities=15% Similarity=0.220 Sum_probs=156.0
Q ss_pred cEEEECccHHHHHHHHHHHhh-CCCCcEEEEcCCCCCC-CceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE
Q psy4525 15 NVCIVGSGPAGFYCAQQILKL-LPQSTVDIYEKLPVPF-GLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD 92 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~-~~g~~v~lie~~~~~g-g~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 92 (388)
+|||||||+||+.+|..++++ .++.+|+|||+++... ..+..+.........++...+.+++++.+++++.+.....+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id 80 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGID 80 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEEe
Confidence 589999999999999999753 3678999999886632 11111110111234455556667777789998877654433
Q ss_pred -----eeeccc-ccccCEEEEeeCCCCCCCCCCCCCCCCCeeeccccccccc---CCCCccccCcCCCCCeEEEEcCChH
Q psy4525 93 -----ISLGDL-TNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYN---GLPEDASLDLSLDCEEATILGQGNV 163 (388)
Q Consensus 93 -----~~~~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~vvVIGgG~s 163 (388)
+.+.+. ...||+||||||+.+ +.+++||. .++++...++..... ....+. .....+++++|||+|.+
T Consensus 81 ~~~~~V~~~~g~~~~yD~LviAtG~~~-~~~~i~g~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vvVvG~G~~ 156 (364)
T TIGR03169 81 PDRRKVLLANRPPLSYDVLSLDVGSTT-PLSGVEGA-ADLAVPVKPIENFLARWEALLESA--DAPPGTKRLAVVGGGAA 156 (364)
T ss_pred cccCEEEECCCCcccccEEEEccCCCC-CCCCCCcc-cccccccCCHHHHHHHHHHHHHHH--hcCCCCceEEEECCCHH
Confidence 344444 348999999999998 47888884 344544333211100 000000 00123579999999999
Q ss_pred HHHHHHHhccCCcccccccCchhHHHhhhcCCC-cEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhh
Q psy4525 164 AMDVARILLSPVDQLKSTDITEHSLEKLSTSRI-KSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEAS 242 (388)
Q Consensus 164 g~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~ 242 (388)
|+|+|..|. ..+++.+. .+|+++ +.+.+...+. +++
T Consensus 157 g~E~A~~l~----------------~~~~~~g~~~~V~li-~~~~~l~~~~-~~~------------------------- 193 (364)
T TIGR03169 157 GVEIALALR----------------RRLPKRGLRGQVTLI-AGASLLPGFP-AKV------------------------- 193 (364)
T ss_pred HHHHHHHHH----------------HHHHhcCCCceEEEE-eCCcccccCC-HHH-------------------------
Confidence 999999886 11112232 479998 4443322211 111
Q ss_pred ccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 243 ATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
...+.+.+. +.||++++++.++++.. + .+. +.+++++++|.||+|+|.
T Consensus 194 ------~~~~~~~l~------------~~gV~v~~~~~v~~i~~---~---~v~--------~~~g~~i~~D~vi~a~G~ 241 (364)
T TIGR03169 194 ------RRLVLRLLA------------RRGIEVHEGAPVTRGPD---G---ALI--------LADGRTLPADAILWATGA 241 (364)
T ss_pred ------HHHHHHHHH------------HCCCEEEeCCeeEEEcC---C---eEE--------eCCCCEEecCEEEEccCC
Confidence 122222222 67999999999998852 2 233 244568999999999999
Q ss_pred CCccCC--CCCcccCCCccccCCC
Q psy4525 323 QSRCVD--SDIPFNEKSCTVIPKE 344 (388)
Q Consensus 323 ~p~~~~--~~l~~~~~~gi~l~~~ 344 (388)
+|++.. .++.++..+++.+|+.
T Consensus 242 ~p~~~l~~~gl~~~~~g~i~vd~~ 265 (364)
T TIGR03169 242 RAPPWLAESGLPLDEDGFLRVDPT 265 (364)
T ss_pred ChhhHHHHcCCCcCCCCeEEECCc
Confidence 998742 4566766667777654
No 71
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.90 E-value=7.5e-22 Score=200.39 Aligned_cols=253 Identities=12% Similarity=0.083 Sum_probs=156.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC-CCCCCce-eeCCCCCCcchh------------------------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL-PVPFGLV-RYGVAPDHPEVK------------------------ 66 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~-~~~gg~~-~~g~~p~~~~~~------------------------ 66 (388)
.+||+|||+||+|+.+|..+.+ .|.+|+|||+. +.+||.| ++||.|......
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~--~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~ 193 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAME--RGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAF 193 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccc
Confidence 5799999999999999999999 89999999974 3688887 778887542100
Q ss_pred -----------------------HHHH-----------HHHHhhcCCC-------cEEEceEE-E-E-EEeee--ccccc
Q psy4525 67 -----------------------NVIN-----------TFTKTGDNPR-------VNFYGNIC-L-G-QDISL--GDLTN 100 (388)
Q Consensus 67 -----------------------~~~~-----------~~~~~~~~~~-------i~~~~~~~-v-~-~~~~~--~~~~~ 100 (388)
.+.+ .+...+++.+ +++..+.. + . ..+.+ +....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~~g~~i 273 (659)
T PTZ00153 194 KNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSGKEF 273 (659)
T ss_pred cccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEccCCEEE
Confidence 0011 1111222222 44443322 1 1 11222 12234
Q ss_pred ccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCccccc
Q psy4525 101 AYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKS 180 (388)
Q Consensus 101 ~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~ 180 (388)
.||+||||||+.| +.|++++.+.+++++..+.... ...+++++|||+|++|+|+|..|.
T Consensus 274 ~ad~lIIATGS~P-~~P~~~~~~~~~V~ts~d~~~l------------~~lpk~VvIVGgG~iGvE~A~~l~-------- 332 (659)
T PTZ00153 274 KVKNIIIATGSTP-NIPDNIEVDQKSVFTSDTAVKL------------EGLQNYMGIVGMGIIGLEFMDIYT-------- 332 (659)
T ss_pred ECCEEEEcCCCCC-CCCCCCCCCCCcEEehHHhhhh------------hhcCCceEEECCCHHHHHHHHHHH--------
Confidence 8999999999988 4666666555667776554421 112679999999999999999775
Q ss_pred ccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhC
Q psy4525 181 TDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTS 260 (388)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 260 (388)
....+||++.+.+.+...+. +++.+ .+...+
T Consensus 333 -------------~~G~eVTLIe~~~~ll~~~d-~eis~-------------------------------~l~~~l---- 363 (659)
T PTZ00153 333 -------------ALGSEVVSFEYSPQLLPLLD-ADVAK-------------------------------YFERVF---- 363 (659)
T ss_pred -------------hCCCeEEEEeccCcccccCC-HHHHH-------------------------------HHHHHH----
Confidence 22357999999887644322 22211 111111
Q ss_pred CCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCc-----c--ccCCceeEEecceEEEccccCCccCC-----
Q psy4525 261 NPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQ-----A--LVTEDTELIPSGIAFRSIGYQSRCVD----- 328 (388)
Q Consensus 261 ~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~-----~--~~~~~~~~l~~D~Vi~a~G~~p~~~~----- 328 (388)
..+.||+++++..++++..++++....+.+.+.. . ....+.+++++|.|++|+|++||+..
T Consensus 364 -------l~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~ 436 (659)
T PTZ00153 364 -------LKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDK 436 (659)
T ss_pred -------hhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCchh
Confidence 1257899999999999986433322233322100 0 00012247999999999999999853
Q ss_pred CCCcccCCCccccCCCC
Q psy4525 329 SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 329 ~~l~~~~~~gi~l~~~~ 345 (388)
.++..+ ++.|.+|++.
T Consensus 437 ~gi~~~-~G~I~VDe~l 452 (659)
T PTZ00153 437 LKIQMK-RGFVSVDEHL 452 (659)
T ss_pred cCCccc-CCEEeECCCC
Confidence 123343 3446776553
No 72
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.89 E-value=5e-22 Score=196.15 Aligned_cols=239 Identities=15% Similarity=0.207 Sum_probs=149.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcc--------------------------h
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPE--------------------------V 65 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~--------------------------~ 65 (388)
.+|++|||+||+|+.+|. +. .|.+|+++|+. .+||.| ++||.|.... .
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~--~g~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~ 76 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RF--ADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRW 76 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HH--CCCeEEEEeCC-CCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCH
Confidence 489999999999998853 44 69999999985 678887 7788875410 1
Q ss_pred hHHHHH--------HH----Hhh---cCCCcEEEceEEEEE---Eeeeccc-ccccCEEEEeeCCCCCCCCCCCCCCCCC
Q psy4525 66 KNVINT--------FT----KTG---DNPRVNFYGNICLGQ---DISLGDL-TNAYHAVVLTYGADNDKKLNIPGEDGKN 126 (388)
Q Consensus 66 ~~~~~~--------~~----~~~---~~~~i~~~~~~~v~~---~~~~~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~~~ 126 (388)
..+..+ +. ... ++.+++++.+...-. .+.+.+. ...||+||||||+.+. .|++.+.....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs~p~-~p~~~~~~~~~ 155 (452)
T TIGR03452 77 PDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSRPY-IPPAIADSGVR 155 (452)
T ss_pred HHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECCCCC-CCCCCCCCCCE
Confidence 111111 10 111 225777776544321 2444333 3489999999999884 55433322112
Q ss_pred eeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 127 IISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 127 v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
+.+..+... ....+++++|||+|++|+|+|..|. ..+ .+|+++.+.+
T Consensus 156 ~~~~~~~~~------------l~~~~k~vvVIGgG~ig~E~A~~l~--------------------~~G-~~Vtli~~~~ 202 (452)
T TIGR03452 156 YHTNEDIMR------------LPELPESLVIVGGGYIAAEFAHVFS--------------------ALG-TRVTIVNRST 202 (452)
T ss_pred EEcHHHHHh------------hhhcCCcEEEECCCHHHHHHHHHHH--------------------hCC-CcEEEEEccC
Confidence 333333221 1113689999999999999999776 233 5799999887
Q ss_pred cccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeee
Q psy4525 207 ALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKL 286 (388)
Q Consensus 207 ~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~ 286 (388)
.+...+ ++++. ..+.+.+ ..+|+++++..++++..
T Consensus 203 ~ll~~~-d~~~~-------------------------------~~l~~~~-------------~~gI~i~~~~~V~~i~~ 237 (452)
T TIGR03452 203 KLLRHL-DEDIS-------------------------------DRFTEIA-------------KKKWDIRLGRNVTAVEQ 237 (452)
T ss_pred cccccc-CHHHH-------------------------------HHHHHHH-------------hcCCEEEeCCEEEEEEE
Confidence 643221 11211 1111111 35799999999999986
Q ss_pred CCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 287 NDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 287 ~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
++ +.+ .+.+ .+++++++|.|++|+|++||+.. .++.+++++.+.+|+..
T Consensus 238 ~~-~~v-~v~~--------~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~ 291 (452)
T TIGR03452 238 DG-DGV-TLTL--------DDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYG 291 (452)
T ss_pred cC-CeE-EEEE--------cCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCc
Confidence 43 222 2332 23457999999999999999842 34566655557777654
No 73
>KOG1336|consensus
Probab=99.89 E-value=9e-22 Score=185.39 Aligned_cols=250 Identities=16% Similarity=0.203 Sum_probs=178.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC-CCceeeCCCCCCc--chhHHHHHHHHhhcCCCcEEEceEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP-FGLVRYGVAPDHP--EVKNVINTFTKTGDNPRVNFYGNIC 88 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~-gg~~~~g~~p~~~--~~~~~~~~~~~~~~~~~i~~~~~~~ 88 (388)
..+.++|||+|++|..|+..+++..+-.+++++-++..+ +... -+ |... ....+..+..++++..+++++.++.
T Consensus 73 ~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~--~L-s~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~ 149 (478)
T KOG1336|consen 73 AARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRA--RL-SKFLLTVGEGLAKRTPEFYKEKGIELILGTS 149 (478)
T ss_pred ccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccch--hc-ccceeeccccccccChhhHhhcCceEEEcce
Confidence 357999999999999999999994334578888755432 2110 00 1111 2344555566677888999998887
Q ss_pred EEE-E-----eeeccccc-ccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCcccc-CcCCCCCeEEEEcC
Q psy4525 89 LGQ-D-----ISLGDLTN-AYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASL-DLSLDCEEATILGQ 160 (388)
Q Consensus 89 v~~-~-----~~~~~~~~-~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~vvVIGg 160 (388)
+.. + +..++++. .|++|+||||+.+ +.+++||.+.++++.-++.... ..+ .......+|+++|+
T Consensus 150 v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~-~~l~~pG~~~~nv~~ireieda-------~~l~~~~~~~~~vV~vG~ 221 (478)
T KOG1336|consen 150 VVKADLASKTLVLGNGETLKYSKLIIATGSSA-KTLDIPGVELKNVFYLREIEDA-------NRLVAAIQLGGKVVCVGG 221 (478)
T ss_pred eEEeeccccEEEeCCCceeecceEEEeecCcc-ccCCCCCccccceeeeccHHHH-------HHHHHHhccCceEEEECc
Confidence 642 2 34444443 8999999999977 6899999998888877775521 111 12223678999999
Q ss_pred ChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchh
Q psy4525 161 GNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHE 240 (388)
Q Consensus 161 G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~ 240 (388)
|+.|+|+|..|. ....+||+|++.+.....+..
T Consensus 222 G~ig~Evaa~l~---------------------~~~~~VT~V~~e~~~~~~lf~-------------------------- 254 (478)
T KOG1336|consen 222 GFIGMEVAAALV---------------------SKAKSVTVVFPEPWLLPRLFG-------------------------- 254 (478)
T ss_pred hHHHHHHHHHHH---------------------hcCceEEEEccCccchhhhhh--------------------------
Confidence 999999999886 446789999998765443222
Q ss_pred hhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcc
Q psy4525 241 ASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSI 320 (388)
Q Consensus 241 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~ 320 (388)
+..++++..++. ++||+++.++.+.++..+.+|.+..+.+ .++.+++||+||+.+
T Consensus 255 -----~~i~~~~~~y~e------------~kgVk~~~~t~~s~l~~~~~Gev~~V~l--------~dg~~l~adlvv~Gi 309 (478)
T KOG1336|consen 255 -----PSIGQFYEDYYE------------NKGVKFYLGTVVSSLEGNSDGEVSEVKL--------KDGKTLEADLVVVGI 309 (478)
T ss_pred -----HHHHHHHHHHHH------------hcCeEEEEecceeecccCCCCcEEEEEe--------ccCCEeccCeEEEee
Confidence 222344444443 7899999999999999887788888865 566799999999999
Q ss_pred ccCCccCC--CCCcccCCCccccCCC
Q psy4525 321 GYQSRCVD--SDIPFNEKSCTVIPKE 344 (388)
Q Consensus 321 G~~p~~~~--~~l~~~~~~gi~l~~~ 344 (388)
|.+||+.. .+..++.+++|.+|+.
T Consensus 310 G~~p~t~~~~~g~~~~~~G~i~V~~~ 335 (478)
T KOG1336|consen 310 GIKPNTSFLEKGILLDSKGGIKVDEF 335 (478)
T ss_pred ccccccccccccceecccCCEeehhc
Confidence 99999864 2455667777776643
No 74
>KOG1335|consensus
Probab=99.89 E-value=2.4e-21 Score=176.71 Aligned_cols=250 Identities=18% Similarity=0.246 Sum_probs=164.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcch-------------------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPEV------------------------- 65 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~~------------------------- 65 (388)
..+||+|||+||+|..||....+ .|++.+++|++..+||.+ +.||.|+....
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQ--lGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~ 115 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQ--LGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVS 115 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHH--hcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCcccccee
Confidence 56999999999999999999999 999999999999999987 67888865321
Q ss_pred --------------hHHHHHHHHhhcCCCcEEEceEE--EE-EEeee--cccc---cccCEEEEeeCCCCCCCCCCCCC-
Q psy4525 66 --------------KNVINTFTKTGDNPRVNFYGNIC--LG-QDISL--GDLT---NAYHAVVLTYGADNDKKLNIPGE- 122 (388)
Q Consensus 66 --------------~~~~~~~~~~~~~~~i~~~~~~~--v~-~~~~~--~~~~---~~yd~lvlAtG~~~~~~~~i~g~- 122 (388)
+++..-+...+++.++++..+.- .+ ..++. .+.. .....+|+||||... ++||.
T Consensus 116 ~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~---~~PGI~ 192 (506)
T KOG1335|consen 116 LDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVT---PFPGIT 192 (506)
T ss_pred cCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCccC---CCCCeE
Confidence 11111222333444444432211 11 01221 1111 256789999998542 35564
Q ss_pred -CCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEE
Q psy4525 123 -DGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNL 201 (388)
Q Consensus 123 -~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 201 (388)
|-+.+.++...+ ....-+++++|||+|.+|+|++.... +-..+||+
T Consensus 193 IDekkIVSStgAL------------sL~~vPk~~~viG~G~IGLE~gsV~~---------------------rLGseVT~ 239 (506)
T KOG1335|consen 193 IDEKKIVSSTGAL------------SLKEVPKKLTVIGAGYIGLEMGSVWS---------------------RLGSEVTV 239 (506)
T ss_pred ecCceEEecCCcc------------chhhCcceEEEEcCceeeeehhhHHH---------------------hcCCeEEE
Confidence 334555554433 22334799999999999999998654 22357999
Q ss_pred EeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcc
Q psy4525 202 VGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSP 281 (388)
Q Consensus 202 i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~ 281 (388)
++-.+.+...+. .|++ +.+...|. .+|+.|++++.+
T Consensus 240 VEf~~~i~~~mD-~Eis-------------------------------k~~qr~L~------------kQgikF~l~tkv 275 (506)
T KOG1335|consen 240 VEFLDQIGGVMD-GEIS-------------------------------KAFQRVLQ------------KQGIKFKLGTKV 275 (506)
T ss_pred EEehhhhccccC-HHHH-------------------------------HHHHHHHH------------hcCceeEeccEE
Confidence 987665543322 2221 12222222 689999999999
Q ss_pred eeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCCCCCcccCCCccccCCCCCCeec
Q psy4525 282 TEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTVIPKEGVPVVT 350 (388)
Q Consensus 282 ~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~~~l~~~~~~gi~l~~~~~~~~~ 350 (388)
..+..+++|. ..+++.+. .+++.++++||++++|+|.+|-+ .+|.+. +.|+.+|+++...++
T Consensus 276 ~~a~~~~dg~-v~i~ve~a---k~~k~~tle~DvlLVsiGRrP~t--~GLgle-~iGi~~D~r~rv~v~ 337 (506)
T KOG1335|consen 276 TSATRNGDGP-VEIEVENA---KTGKKETLECDVLLVSIGRRPFT--EGLGLE-KIGIELDKRGRVIVN 337 (506)
T ss_pred EEeeccCCCc-eEEEEEec---CCCceeEEEeeEEEEEccCcccc--cCCChh-hcccccccccceecc
Confidence 9999877764 45555543 36778899999999999999987 345554 356666666654444
No 75
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.88 E-value=4.8e-21 Score=204.67 Aligned_cols=227 Identities=15% Similarity=0.108 Sum_probs=160.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCC-CCCCcchhHHHHHHHHhhcCC-CcEEEceEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGV-APDHPEVKNVINTFTKTGDNP-RVNFYGNICLG 90 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~-~p~~~~~~~~~~~~~~~~~~~-~i~~~~~~~v~ 90 (388)
.++|+|||||||||+||.++++ .|.+|+|||+.+.+||.+.+.. ........++.....+.+... +++++.++.+.
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar--~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~ 240 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAAR--AGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAF 240 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEE
Confidence 4799999999999999999999 9999999999999999885421 011123344545555555555 58888765442
Q ss_pred EE-----------ee----------e-ccc-ccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccC
Q psy4525 91 QD-----------IS----------L-GDL-TNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLD 147 (388)
Q Consensus 91 ~~-----------~~----------~-~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~ 147 (388)
.. .. . +.. ...||+||||||+.+ +++++||.+.++|+++.......+. .
T Consensus 241 ~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~-r~~pipG~~~pgV~~~~~~~~~l~~-------~ 312 (985)
T TIGR01372 241 GYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHE-RPLVFANNDRPGVMLAGAARTYLNR-------Y 312 (985)
T ss_pred EEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCC-cCCCCCCCCCCCcEEchHHHHHHHh-------h
Confidence 10 00 0 000 237999999999998 6889999999999987655433221 1
Q ss_pred cCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCce
Q psy4525 148 LSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQ 227 (388)
Q Consensus 148 ~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~ 227 (388)
....+++|+|||+|++|+|+|..|+ +.+.+.|+++.+++...
T Consensus 313 ~~~~gk~VvViG~G~~g~e~A~~L~--------------------~~G~~vV~vv~~~~~~~------------------ 354 (985)
T TIGR01372 313 GVAPGKRIVVATNNDSAYRAAADLL--------------------AAGIAVVAIIDARADVS------------------ 354 (985)
T ss_pred CcCCCCeEEEECCCHHHHHHHHHHH--------------------HcCCceEEEEccCcchh------------------
Confidence 1235799999999999999999876 35656788887664320
Q ss_pred EEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCc
Q psy4525 228 TVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTED 307 (388)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~ 307 (388)
..+...+ .+.||+++++..++++.+ ++.+.++++.. ..++
T Consensus 355 ----------------------~~l~~~L------------~~~GV~i~~~~~v~~i~g--~~~v~~V~l~~----~~g~ 394 (985)
T TIGR01372 355 ----------------------PEARAEA------------RELGIEVLTGHVVAATEG--GKRVSGVAVAR----NGGA 394 (985)
T ss_pred ----------------------HHHHHHH------------HHcCCEEEcCCeEEEEec--CCcEEEEEEEe----cCCc
Confidence 0011111 257899999999999984 45677776642 1356
Q ss_pred eeEEecceEEEccccCCccC
Q psy4525 308 TELIPSGIAFRSIGYQSRCV 327 (388)
Q Consensus 308 ~~~l~~D~Vi~a~G~~p~~~ 327 (388)
+++++||.|++++|++||+.
T Consensus 395 ~~~i~~D~V~va~G~~Pnt~ 414 (985)
T TIGR01372 395 GQRLEADALAVSGGWTPVVH 414 (985)
T ss_pred eEEEECCEEEEcCCcCchhH
Confidence 67899999999999999973
No 76
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.1e-21 Score=176.84 Aligned_cols=259 Identities=19% Similarity=0.227 Sum_probs=180.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee--CCC----CCCcchhHHHHHHHHhhcCCCcEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY--GVA----PDHPEVKNVINTFTKTGDNPRVNFY 84 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~--g~~----p~~~~~~~~~~~~~~~~~~~~i~~~ 84 (388)
+..++|+||||||||-+||.+.++ +|++.=++-. .+||.... ++. -.+.+..++...+.+..+++.+++.
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaAR--KGiRTGl~ae--rfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDim 284 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAAR--KGIRTGLVAE--RFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVM 284 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHh--hcchhhhhhh--hhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhh
Confidence 457999999999999999999999 8998766542 46776522 221 1123566777788888888888765
Q ss_pred ceEEEE-----------EEeeeccccc-ccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCcccc-CcCCC
Q psy4525 85 GNICLG-----------QDISLGDLTN-AYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASL-DLSLD 151 (388)
Q Consensus 85 ~~~~v~-----------~~~~~~~~~~-~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~ 151 (388)
.-.+.. ..+++..+.. ....+|+|||+++ |..++||.+ +|... +..+|..| ...++
T Consensus 285 n~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArW-Rn~nvPGE~--------e~rnK--GVayCPHCDGPLF~ 353 (520)
T COG3634 285 NLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARW-RNMNVPGED--------EYRNK--GVAYCPHCDGPLFK 353 (520)
T ss_pred hhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcch-hcCCCCchH--------HHhhC--CeeeCCCCCCcccC
Confidence 333221 1234443322 5778999999999 799999987 44422 32233333 67789
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEec
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFR 231 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~ 231 (388)
+|+|+|||||+||+|.|..|+ .-+.+||++.=.+ +++.
T Consensus 354 gK~VAVIGGGNSGvEAAIDLA---------------------Giv~hVtllEF~~---------eLkA------------ 391 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLA---------------------GIVEHVTLLEFAP---------ELKA------------ 391 (520)
T ss_pred CceEEEECCCcchHHHHHhHH---------------------hhhheeeeeecch---------hhhh------------
Confidence 999999999999999999997 3356899876332 1110
Q ss_pred ccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEE
Q psy4525 232 NEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELI 311 (388)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l 311 (388)
.+-+...+. .-.++.++.+...+++.+++ .+|.++...+. .+++...+
T Consensus 392 -----------------D~VLq~kl~-----------sl~Nv~ii~na~Ttei~Gdg-~kV~Gl~Y~dr---~sge~~~l 439 (520)
T COG3634 392 -----------------DAVLQDKLR-----------SLPNVTIITNAQTTEVKGDG-DKVTGLEYRDR---VSGEEHHL 439 (520)
T ss_pred -----------------HHHHHHHHh-----------cCCCcEEEecceeeEEecCC-ceecceEEEec---cCCceeEE
Confidence 011112221 14689999999999999753 68899988653 36777888
Q ss_pred ecceEEEccccCCccC--CCCCcccCCCccccCCCCCCeecchhhHHhHH
Q psy4525 312 PSGIAFRSIGYQSRCV--DSDIPFNEKSCTVIPKEGVPVVTWEGWKAIDK 359 (388)
Q Consensus 312 ~~D~Vi~a~G~~p~~~--~~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~ 359 (388)
+-+-|++-+|.-||+. ...+.+.+.+-|++|.+|...+. ..+.+.|+
T Consensus 440 ~LeGvFVqIGL~PNT~WLkg~vel~~rGEIivD~~g~Tsvp-GvFAAGD~ 488 (520)
T COG3634 440 ELEGVFVQIGLLPNTEWLKGAVELNRRGEIIVDARGETNVP-GVFAAGDC 488 (520)
T ss_pred EeeeeEEEEecccChhHhhchhhcCcCccEEEecCCCcCCC-ceeecCcc
Confidence 9999999999999983 33467777777889988875544 45555554
No 77
>KOG0405|consensus
Probab=99.87 E-value=3.5e-21 Score=173.55 Aligned_cols=244 Identities=18% Similarity=0.185 Sum_probs=162.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCc---------------------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHP--------------------------- 63 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~--------------------------- 63 (388)
..+|..|||||-.|+++|...++ .|.++.++|..-.+||.+ ++||.|...
T Consensus 19 k~fDylvIGgGSGGvasARrAa~--~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~f 96 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAAS--HGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSF 96 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHh--cCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCC
Confidence 46899999999999999999999 899999999887888887 778876320
Q ss_pred -------chhHHHH----HHHHhhcCCCcEEEceE-EEEE----Eeeecccc---cccCEEEEeeCCCCCCCCCCCCCCC
Q psy4525 64 -------EVKNVIN----TFTKTGDNPRVNFYGNI-CLGQ----DISLGDLT---NAYHAVVLTYGADNDKKLNIPGEDG 124 (388)
Q Consensus 64 -------~~~~~~~----~~~~~~~~~~i~~~~~~-~v~~----~~~~~~~~---~~yd~lvlAtG~~~~~~~~i~g~~~ 124 (388)
....+.. .|++.+.+.+++++.+. ++.. ++...+.. ....+++||||..|. .|.|||.+.
T Consensus 97 dW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~-~PnIpG~E~ 175 (478)
T KOG0405|consen 97 DWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPI-IPNIPGAEL 175 (478)
T ss_pred cHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccC-CCCCCchhh
Confidence 0112222 23445555667666443 2211 23333332 256799999999995 779998652
Q ss_pred CCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEee
Q psy4525 125 KNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGR 204 (388)
Q Consensus 125 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r 204 (388)
-+++..|. .....++|++|+|+|++|+|+|..++ .-..+++++.|
T Consensus 176 --gidSDgff------------~Lee~Pkr~vvvGaGYIavE~Agi~~---------------------gLgsethlfiR 220 (478)
T KOG0405|consen 176 --GIDSDGFF------------DLEEQPKRVVVVGAGYIAVEFAGIFA---------------------GLGSETHLFIR 220 (478)
T ss_pred --cccccccc------------chhhcCceEEEEccceEEEEhhhHHh---------------------hcCCeeEEEEe
Confidence 12222333 12234799999999999999999876 23357999999
Q ss_pred cCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceee
Q psy4525 205 RGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEF 284 (388)
Q Consensus 205 ~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i 284 (388)
.+.....|.+ .++ ..+.+. +..+||.+|.+++++++
T Consensus 221 ~~kvLR~FD~-~i~-------------------------------~~v~~~------------~~~~ginvh~~s~~~~v 256 (478)
T KOG0405|consen 221 QEKVLRGFDE-MIS-------------------------------DLVTEH------------LEGRGINVHKNSSVTKV 256 (478)
T ss_pred cchhhcchhH-HHH-------------------------------HHHHHH------------hhhcceeecccccceee
Confidence 9876655442 111 111122 23789999999999999
Q ss_pred eeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCCCCCcccCCCccccCCCCCCee
Q psy4525 285 KLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTVIPKEGVPVV 349 (388)
Q Consensus 285 ~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~~~l~~~~~~gi~l~~~~~~~~ 349 (388)
....++-...+ +..+....+|.++||+|.+||+.. |.+. +-|+.+++.|.+.+
T Consensus 257 ~K~~~g~~~~i---------~~~~~i~~vd~llwAiGR~Pntk~--L~le-~vGVk~~~~g~Iiv 309 (478)
T KOG0405|consen 257 IKTDDGLELVI---------TSHGTIEDVDTLLWAIGRKPNTKG--LNLE-NVGVKTDKNGAIIV 309 (478)
T ss_pred eecCCCceEEE---------EeccccccccEEEEEecCCCCccc--ccch-hcceeeCCCCCEEE
Confidence 87665544333 233345569999999999999953 2232 34555555544433
No 78
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.85 E-value=1e-20 Score=186.09 Aligned_cols=267 Identities=17% Similarity=0.205 Sum_probs=185.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCC-CCcEEEEcCCCCCC-Cce-eeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLP-QSTVDIYEKLPVPF-GLV-RYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICL 89 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~-g~~v~lie~~~~~g-g~~-~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 89 (388)
..++||||.|+||..+...+.+..+ -++||+|..++++. ... ...+.+.....+++.-.-.+++++++++++.+..+
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 4689999999999999999998543 47999999887652 111 11122333455666666677889999999988776
Q ss_pred EE------Eeeecccc-cccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCCh
Q psy4525 90 GQ------DISLGDLT-NAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGN 162 (388)
Q Consensus 90 ~~------~~~~~~~~-~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~ 162 (388)
.. .++.+.+. ..||+||+||||.|. .+++||.+.++++.-+++...+.... .....++.+|||||.
T Consensus 83 ~~idr~~k~V~t~~g~~~~YDkLilATGS~pf-i~PiPG~~~~~v~~~R~i~D~~am~~------~ar~~~~avVIGGGL 155 (793)
T COG1251 83 IQIDRANKVVTTDAGRTVSYDKLIIATGSYPF-ILPIPGSDLPGVFVYRTIDDVEAMLD------CARNKKKAVVIGGGL 155 (793)
T ss_pred EEeccCcceEEccCCcEeecceeEEecCcccc-ccCCCCCCCCCeeEEecHHHHHHHHH------HHhccCCcEEEccch
Confidence 32 24444443 489999999999995 77899999999998887764432211 112246689999999
Q ss_pred HHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhh
Q psy4525 163 VAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEAS 242 (388)
Q Consensus 163 sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~ 242 (388)
.|+|.|..|. ..+ -++++++-.+.++....
T Consensus 156 LGlEaA~~L~--------------------~~G-m~~~Vvh~~~~lMerQL----------------------------- 185 (793)
T COG1251 156 LGLEAARGLK--------------------DLG-MEVTVVHIAPTLMERQL----------------------------- 185 (793)
T ss_pred hhhHHHHHHH--------------------hCC-CceEEEeecchHHHHhh-----------------------------
Confidence 9999999775 233 46888887765432211
Q ss_pred ccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 243 ATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
.+...+++... +.+.|++++++....++.+ ++.+.++++. ++.++++|.||+|+|+
T Consensus 186 ---D~~ag~lL~~~-----------le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~--------DG~~i~ad~VV~a~GI 241 (793)
T COG1251 186 ---DRTAGRLLRRK-----------LEDLGIKVLLEKNTEEIVG--EDKVEGVRFA--------DGTEIPADLVVMAVGI 241 (793)
T ss_pred ---hhHHHHHHHHH-----------HHhhcceeecccchhhhhc--CcceeeEeec--------CCCcccceeEEEeccc
Confidence 11111111111 2378999999999999985 5788888874 4568999999999999
Q ss_pred CCccC---CCCCcccCCCccccCCCCCCeecchhhHHhHHHHHH
Q psy4525 323 QSRCV---DSDIPFNEKSCTVIPKEGVPVVTWEGWKAIDKEETE 363 (388)
Q Consensus 323 ~p~~~---~~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~~~~~ 363 (388)
+||.. .++++++ +||++|+..... +.+.....+++|..
T Consensus 242 rPn~ela~~aGlavn--rGIvvnd~mqTs-dpdIYAvGEcae~~ 282 (793)
T COG1251 242 RPNDELAKEAGLAVN--RGIVVNDYMQTS-DPDIYAVGECAEHR 282 (793)
T ss_pred ccccHhHHhcCcCcC--CCeeeccccccc-CCCeeehhhHHHhc
Confidence 99985 2678886 499998766432 33444444455443
No 79
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.85 E-value=1.6e-20 Score=165.81 Aligned_cols=157 Identities=26% Similarity=0.341 Sum_probs=102.3
Q ss_pred EEECccHHHHHHHHHHHhhCCCCc-EEEEcCCCCCCCceee-C-C----CCC---------------------------C
Q psy4525 17 CIVGSGPAGFYCAQQILKLLPQST-VDIYEKLPVPFGLVRY-G-V----APD---------------------------H 62 (388)
Q Consensus 17 vIIGaG~aGl~aA~~l~~~~~g~~-v~lie~~~~~gg~~~~-g-~----~p~---------------------------~ 62 (388)
+||||||+||++|..|.+ .|.+ ++|||+++.+||.|.. . . .|. +
T Consensus 1 ~IIGaG~aGl~~a~~l~~--~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE--RGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHH--TT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred CEECcCHHHHHHHHHHHh--CCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence 699999999999999999 8998 9999999999998842 0 0 011 1
Q ss_pred cchhHHHHHHHHhhcCCCcEEEceEEEEEE--------eeeccc-ccccCEEEEeeCCC-CCCCCCCCC-CCCCCeeecc
Q psy4525 63 PEVKNVINTFTKTGDNPRVNFYGNICLGQD--------ISLGDL-TNAYHAVVLTYGAD-NDKKLNIPG-EDGKNIISAR 131 (388)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~--------~~~~~~-~~~yd~lvlAtG~~-~~~~~~i~g-~~~~~v~~~~ 131 (388)
...+++.+++.++++++++++++++.|... +++.+. ...+|+||+|||.. .++.|.++| .+. .+++..
T Consensus 79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~-~~~h~~ 157 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFR-PIIHSA 157 (203)
T ss_dssp EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCS-EEEEGG
T ss_pred CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcccccccccc-ceEehh
Confidence 234567788888888899888888877432 444444 34799999999962 345778888 333 555665
Q ss_pred cccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcc
Q psy4525 132 SFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGAL 208 (388)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~ 208 (388)
++.. ...+++++|+|||+|.||+|+|..|+ +.+ ++|+++.|++.|
T Consensus 158 ~~~~-----------~~~~~~k~V~VVG~G~SA~d~a~~l~--------------------~~g-~~V~~~~R~~~~ 202 (203)
T PF13738_consen 158 DWRD-----------PEDFKGKRVVVVGGGNSAVDIAYALA--------------------KAG-KSVTLVTRSPIW 202 (203)
T ss_dssp G-ST-----------TGGCTTSEEEEE--SHHHHHHHHHHT--------------------TTC-SEEEEEESS---
T ss_pred hcCC-----------hhhcCCCcEEEEcChHHHHHHHHHHH--------------------hhC-CEEEEEecCCCC
Confidence 5432 23456899999999999999999887 233 789999999765
No 80
>KOG1399|consensus
Probab=99.85 E-value=4.1e-20 Score=178.88 Aligned_cols=148 Identities=22% Similarity=0.345 Sum_probs=109.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeC--------C-C--------------C--------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYG--------V-A--------------P-------- 60 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g--------~-~--------------p-------- 60 (388)
..++|+|||||||||.+|..|.+ .|.++++|||.+.+||+|.|. . . |
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~--~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~ 82 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLR--EGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERD 82 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHH--CCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccC
Confidence 46899999999999999999999 999999999999999999775 1 1 1
Q ss_pred --CCcchhHHHHHHHHhhcCCCc--EEEceEEEEE---------Eeeecc-----cccccCEEEEeeCCCC-CCCCCCCC
Q psy4525 61 --DHPEVKNVINTFTKTGDNPRV--NFYGNICLGQ---------DISLGD-----LTNAYHAVVLTYGADN-DKKLNIPG 121 (388)
Q Consensus 61 --~~~~~~~~~~~~~~~~~~~~i--~~~~~~~v~~---------~~~~~~-----~~~~yd~lvlAtG~~~-~~~~~i~g 121 (388)
.++...++.+++..+++++++ .+.+++.+.. .+...+ .+.-||.|++|||... ++.|.++|
T Consensus 83 ~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g 162 (448)
T KOG1399|consen 83 PRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPG 162 (448)
T ss_pred cccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCC
Confidence 113455889999999999886 3555553211 121111 1236999999999874 45677777
Q ss_pred CC----CCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhc
Q psy4525 122 ED----GKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILL 172 (388)
Q Consensus 122 ~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~ 172 (388)
.. ...++|+.+|. ....+.+|+|+|||+|+||+|++..++
T Consensus 163 ~~~~~f~G~~iHS~~Yk-----------~~e~f~~k~VlVIG~g~SG~DIs~d~~ 206 (448)
T KOG1399|consen 163 PGIESFKGKIIHSHDYK-----------SPEKFRDKVVLVVGCGNSGMDISLDLL 206 (448)
T ss_pred CchhhcCCcceehhhcc-----------CcccccCceEEEECCCccHHHHHHHHH
Confidence 32 23455665554 145577899999999999999999876
No 81
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.84 E-value=3e-19 Score=175.04 Aligned_cols=167 Identities=20% Similarity=0.240 Sum_probs=117.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCc-EEEEcCCCCCCCceeeCCC--------------CCCc--------chhH
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQST-VDIYEKLPVPFGLVRYGVA--------------PDHP--------EVKN 67 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~-v~lie~~~~~gg~~~~g~~--------------p~~~--------~~~~ 67 (388)
....+|+|||||++||++|.+|++ .|.. ++|||+.+.+||.|++... |..+ ....
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~--~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~ 83 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQ--AGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAE 83 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHH--cCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCccc
Confidence 456899999999999999999999 8888 9999999999999855322 1111 1223
Q ss_pred HHHHHHHhhcCCCcEE--EceEEEEE----------Eeeeccccc---ccCEEEEeeCC-CCCCCCCCCCCCC--CCeee
Q psy4525 68 VINTFTKTGDNPRVNF--YGNICLGQ----------DISLGDLTN---AYHAVVLTYGA-DNDKKLNIPGEDG--KNIIS 129 (388)
Q Consensus 68 ~~~~~~~~~~~~~i~~--~~~~~v~~----------~~~~~~~~~---~yd~lvlAtG~-~~~~~~~i~g~~~--~~v~~ 129 (388)
+.+++..+++++++.+ .+++.|.. .++.++... .+|.||+|||. ..+..|.++|.+. ..++|
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~H 163 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILH 163 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEEc
Confidence 5555666666555432 23333211 133333332 39999999995 3335778888762 23455
Q ss_pred cccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccc
Q psy4525 130 ARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQ 209 (388)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~ 209 (388)
+.+|.. ...+++|+|+|||+|+||+|+|.+|+ +.+ ++||++.|++.+.
T Consensus 164 S~~~~~-----------~~~~~GKrV~VIG~GaSA~di~~~l~--------------------~~g-a~vt~~qRs~~~~ 211 (443)
T COG2072 164 SADWPN-----------PEDLRGKRVLVIGAGASAVDIAPELA--------------------EVG-ASVTLSQRSPPHI 211 (443)
T ss_pred hhcCCC-----------ccccCCCeEEEECCCccHHHHHHHHH--------------------hcC-CeeEEEecCCCce
Confidence 555441 45678999999999999999999887 234 7899999999887
Q ss_pred cc
Q psy4525 210 VA 211 (388)
Q Consensus 210 ~~ 211 (388)
.+
T Consensus 212 ~~ 213 (443)
T COG2072 212 LP 213 (443)
T ss_pred ec
Confidence 55
No 82
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.82 E-value=6.1e-20 Score=173.78 Aligned_cols=262 Identities=15% Similarity=0.167 Sum_probs=136.9
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC---CceeeCCC--------------C----------------
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF---GLVRYGVA--------------P---------------- 60 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g---g~~~~g~~--------------p---------------- 60 (388)
+|+++||.||++|++|..|.+. ...++.+||+.+.+. |++..|.. |
T Consensus 3 ~D~igIG~GP~nLslA~~l~~~-~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 3 YDLIGIGFGPFNLSLAALLEEH-GDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp ESEEEE--SHHHHHHHHHHHHH-H---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred eeEEEEeeCHHHHHHHHHhhhc-CCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 6999999999999999999995 358999999887542 33322110 1
Q ss_pred --------CCcchhHHHHHHHHhhcCCCcEEEceEEEEE------------Eeeec-----ccccccCEEEEeeCCCCCC
Q psy4525 61 --------DHPEVKNVINTFTKTGDNPRVNFYGNICLGQ------------DISLG-----DLTNAYHAVVLTYGADNDK 115 (388)
Q Consensus 61 --------~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~------------~~~~~-----~~~~~yd~lvlAtG~~~~~ 115 (388)
..+...++.+++...++++.-.++++..|.. .+... .....++.||+|||..|.
T Consensus 82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~- 160 (341)
T PF13434_consen 82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPR- 160 (341)
T ss_dssp HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE--
T ss_pred hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCC-
Confidence 1133456666666666666544555555521 12221 112267899999997663
Q ss_pred CCC-CCCCC-CCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhc
Q psy4525 116 KLN-IPGED-GKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLST 193 (388)
Q Consensus 116 ~~~-i~g~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.|. +.... .+.|+|+.+|...... ....++|+|||||.||.|++..|.. +
T Consensus 161 iP~~~~~~~~~~~v~Hss~~~~~~~~---------~~~~~~V~VVGgGQSAAEi~~~L~~-------------------~ 212 (341)
T PF13434_consen 161 IPEWFQDLPGSPRVFHSSEYLSRIDQ---------SLAGKRVAVVGGGQSAAEIFLDLLR-------------------R 212 (341)
T ss_dssp --GGGGGGTT-TTEEEGGGHHHHHT--------------EEEEEE-SSHHHHHHHHHHHH-------------------H
T ss_pred CCcchhhcCCCCCEEEehHhhhcccc---------ccCCCeEEEECCcHhHHHHHHHHHh-------------------C
Confidence 442 33333 3789999999855321 3457899999999999999998861 1
Q ss_pred CCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHH----------------HH
Q psy4525 194 SRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTEL----------------IL 257 (388)
Q Consensus 194 ~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------------~~ 257 (388)
....+|+++.|+..+... ...|..+..+.|+..+.+...+. ..+.+++.. +.
T Consensus 213 ~~~~~V~~i~R~~~~~~~---------d~s~f~ne~f~P~~v~~f~~l~~---~~R~~~l~~~~~~ny~~i~~~~l~~iy 280 (341)
T PF13434_consen 213 GPEAKVTWISRSPGFFPM---------DDSPFVNEIFSPEYVDYFYSLPD---EERRELLREQRHTNYGGIDPDLLEAIY 280 (341)
T ss_dssp -TTEEEEEEESSSS-EB-------------CCHHGGGSHHHHHHHHTS-H---HHHHHHHHHTGGGTSSEB-HHHHHHHH
T ss_pred CCCcEEEEEECCCccCCC---------ccccchhhhcCchhhhhhhcCCH---HHHHHHHHHhHhhcCCCCCHHHHHHHH
Confidence 222589999999876543 23344444455554443333321 112222211 11
Q ss_pred hhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 258 KTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 258 ~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
..++... -..+..+.++.++.++.+...+++. ..+.+.+. .++..+++++|.||+||||+
T Consensus 281 ~~lY~~~--v~g~~~~~l~~~~~v~~~~~~~~~~-~~l~~~~~---~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 281 DRLYEQR--VSGRGRLRLLPNTEVTSAEQDGDGG-VRLTLRHR---QTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp HHHHHHH--HHT---SEEETTEEEEEEEEES-SS-EEEEEEET---TT--EEEEEESEEEE---EE
T ss_pred HHHHHHH--hcCCCCeEEeCCCEEEEEEECCCCE-EEEEEEEC---CCCCeEEEecCEEEEcCCcc
Confidence 1111000 0123468899999999998765433 23444332 35677899999999999996
No 83
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.81 E-value=3e-18 Score=158.64 Aligned_cols=326 Identities=13% Similarity=0.111 Sum_probs=195.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC---CCceeeCCC--------------CC------------
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP---FGLVRYGVA--------------PD------------ 61 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~---gg~~~~g~~--------------p~------------ 61 (388)
....|++.||.||+.|++|..|... .+.++.++|+.+.+ .|++..|.. |.
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~-~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h 81 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEH-SGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH 81 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccc-cCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence 3457999999999999999999984 34889999998764 233322211 11
Q ss_pred ------------CcchhHHHHHHHHhhcCCCcEEEceEEEEEE------------eeeccc-ccccCEEEEeeCCCCCCC
Q psy4525 62 ------------HPEVKNVINTFTKTGDNPRVNFYGNICLGQD------------ISLGDL-TNAYHAVVLTYGADNDKK 116 (388)
Q Consensus 62 ------------~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~------------~~~~~~-~~~yd~lvlAtG~~~~~~ 116 (388)
++...++.++....+..+ -.+++++.|... +...+. ...+..|||++|..|.-+
T Consensus 82 ~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP 160 (436)
T COG3486 82 GRLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYIP 160 (436)
T ss_pred chHhhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCCC
Confidence 122344444444444443 345555555311 111122 236779999999988534
Q ss_pred CCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCC
Q psy4525 117 LNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRI 196 (388)
Q Consensus 117 ~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (388)
+.+.....+.+||+.+|..+ ++.. ...++|.|||+|.||.|+...|....+. ..
T Consensus 161 ~~f~~l~~~~vfHss~~~~~---~~~~------~~~~~V~ViG~GQSAAEi~~~Ll~~~~~----------------~~- 214 (436)
T COG3486 161 PCFRSLIGERVFHSSEYLER---HPEL------LQKRSVTVIGSGQSAAEIFLDLLNSQPP----------------QD- 214 (436)
T ss_pred hHHhCcCccceeehHHHHHh---hHHh------hcCceEEEEcCCccHHHHHHHHHhCCCC----------------cC-
Confidence 44555556789999999843 2111 1223499999999999999988622211 12
Q ss_pred cEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccc----------------cchhhHHHHHHHhhC
Q psy4525 197 KSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATL----------------ARPRKRLTELILKTS 260 (388)
Q Consensus 197 ~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l----------------~~~~~~~~~~~~~~~ 260 (388)
.++.|+.|+..+.. |...+.....+.|+..+.+...+.+- .....++...|....
T Consensus 215 ~~l~witR~~gf~p---------~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~ 285 (436)
T COG3486 215 YQLNWITRSSGFLP---------MDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQS 285 (436)
T ss_pred ccceeeeccCCCCc---------cccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHH
Confidence 25899999977644 33344444455666555444433110 011122222222221
Q ss_pred CCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccC---C---CCCccc
Q psy4525 261 NPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCV---D---SDIPFN 334 (388)
Q Consensus 261 ~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~---~---~~l~~~ 334 (388)
. ...+..+.++.++.+..++..++|+ ..+.+... .+++.+++++|.||+||||+.... . +.+.++
T Consensus 286 l-----~~~~~~v~l~~~~ev~~~~~~G~g~-~~l~~~~~---~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d 356 (436)
T COG3486 286 L-----GGRKPDVRLLSLSEVQSVEPAGDGR-YRLTLRHH---ETGELETVETDAVILATGYRRAVPSFLEGLADRLQWD 356 (436)
T ss_pred h-----cCCCCCeeeccccceeeeecCCCce-EEEEEeec---cCCCceEEEeeEEEEecccccCCchhhhhHHHhhccc
Confidence 1 2336789999999999999876665 34444322 367888999999999999994432 1 233444
Q ss_pred CCCccc-----------------------cCCCCCCeecchhhHHhHHHHHHccccCCCCccccCCHHHHHhh
Q psy4525 335 EKSCTV-----------------------IPKEGVPVVTWEGWKAIDKEETERGKLKGKPREKIISIEEMISV 384 (388)
Q Consensus 335 ~~~gi~-----------------------l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 384 (388)
..++.. +..+|+..- .=+|.+.-++++.. +..|++.+.....+-+..+
T Consensus 357 ~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHGig~p-dLsl~a~Raa~I~~-~L~g~~~~~~~~~~~fq~f 427 (436)
T COG3486 357 DDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHGIGAP-DLSLGAWRAAVILN-SLLGREKYPVPARAVFQQF 427 (436)
T ss_pred ccCCeEecCceeeecCCCCcceEEEecccccccccCCc-cchHHHHHHHHHHH-HHhCcCCCCCccchhhhhc
Confidence 444443 234454332 34788888888884 7788777766655444433
No 84
>KOG4716|consensus
Probab=99.79 E-value=2.7e-18 Score=154.43 Aligned_cols=232 Identities=16% Similarity=0.218 Sum_probs=148.0
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcC---CC-----CCCCce-eeCCCCCCc------------------
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEK---LP-----VPFGLV-RYGVAPDHP------------------ 63 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~---~~-----~~gg~~-~~g~~p~~~------------------ 63 (388)
...+|++|||||.+||+||...+. .|.+|.++|- .| -+||.+ +.||.|...
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~--~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyG 94 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAAD--LGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYG 94 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHh--cCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhC
Confidence 457999999999999999999999 8999999983 11 245665 667776421
Q ss_pred ----------chhHHHHHHHHhhcCCCcEEE--ceEE-E----------E---EEeeeccccc---ccCEEEEeeCCCCC
Q psy4525 64 ----------EVKNVINTFTKTGDNPRVNFY--GNIC-L----------G---QDISLGDLTN---AYHAVVLTYGADND 114 (388)
Q Consensus 64 ----------~~~~~~~~~~~~~~~~~i~~~--~~~~-v----------~---~~~~~~~~~~---~yd~lvlAtG~~~~ 114 (388)
....+.+..++..+..|.-.+ ++.. | + ...+....++ ..+.+|||||.+|
T Consensus 95 W~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RP- 173 (503)
T KOG4716|consen 95 WNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRP- 173 (503)
T ss_pred CCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCC-
Confidence 123344444555554443222 1111 1 0 0112222222 5789999999999
Q ss_pred CCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcC
Q psy4525 115 KKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTS 194 (388)
Q Consensus 115 ~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+.|+|||.. +--+++.++. .....+.+-+|||+|++|+|+|..|+ .
T Consensus 174 rYp~IpG~~-Ey~ITSDDlF------------sl~~~PGkTLvVGa~YVaLECAgFL~---------------------g 219 (503)
T KOG4716|consen 174 RYPDIPGAK-EYGITSDDLF------------SLPYEPGKTLVVGAGYVALECAGFLK---------------------G 219 (503)
T ss_pred CCCCCCCce-eeeecccccc------------cccCCCCceEEEccceeeeehhhhHh---------------------h
Confidence 799999954 2233444443 12234567889999999999999886 2
Q ss_pred CCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEE
Q psy4525 195 RIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFR 274 (388)
Q Consensus 195 ~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 274 (388)
..-+||++.|+-.+ ..| .+.+.+.+.++ +.+.||+
T Consensus 220 fg~~vtVmVRSI~L-rGF------------------------------------Dqdmae~v~~~--------m~~~Gik 254 (503)
T KOG4716|consen 220 FGYDVTVMVRSILL-RGF------------------------------------DQDMAELVAEH--------MEERGIK 254 (503)
T ss_pred cCCCcEEEEEEeec-ccc------------------------------------cHHHHHHHHHH--------HHHhCCc
Confidence 23469999998432 111 12222232222 2378999
Q ss_pred EEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC
Q psy4525 275 PIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD 328 (388)
Q Consensus 275 ~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~ 328 (388)
|.-...|.+++.-+++++.-. ... ..++++-+-++|.|+||+|.++++.+
T Consensus 255 f~~~~vp~~Veq~~~g~l~v~-~k~---t~t~~~~~~~ydTVl~AiGR~~~~~~ 304 (503)
T KOG4716|consen 255 FLRKTVPERVEQIDDGKLRVF-YKN---TNTGEEGEEEYDTVLWAIGRKALTDD 304 (503)
T ss_pred eeecccceeeeeccCCcEEEE-eec---ccccccccchhhhhhhhhccccchhh
Confidence 999888988887666663222 221 12455556789999999999998864
No 85
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.77 E-value=7.1e-18 Score=165.90 Aligned_cols=235 Identities=14% Similarity=0.160 Sum_probs=146.1
Q ss_pred HHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCc-----chhHHHHH-HHHhhcCCCcEEEceEEEEE-E-----ee
Q psy4525 27 YCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHP-----EVKNVINT-FTKTGDNPRVNFYGNICLGQ-D-----IS 94 (388)
Q Consensus 27 ~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~-----~~~~~~~~-~~~~~~~~~i~~~~~~~v~~-~-----~~ 94 (388)
+||.+|++..+..+|+|||+++.++ ...+++ |.+. ..++...+ ..+++.+++++++.++.|.. + +.
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~-~~~~~l-~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~ 78 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVS-FANCGL-PYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVV 78 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCcee-EEcCCC-CeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEE
Confidence 4788888866678999999997653 222233 3221 12222322 23344778999876655532 1 22
Q ss_pred ecc---c-ccc--cCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHH
Q psy4525 95 LGD---L-TNA--YHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVA 168 (388)
Q Consensus 95 ~~~---~-~~~--yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a 168 (388)
+.. . ... ||+||||||+.+ +.+++||.+.+++++..++..... +........+++|+|||+|++|+|+|
T Consensus 79 ~~~~~~~~~~~~~yd~lIiATG~~p-~~~~i~G~~~~~v~~~~~~~~~~~----~~~~l~~~~~~~vvViGgG~~g~e~A 153 (427)
T TIGR03385 79 VRNNKTNETYEESYDYLILSPGASP-IVPNIEGINLDIVFTLRNLEDTDA----IKQYIDKNKVENVVIIGGGYIGIEMA 153 (427)
T ss_pred EEECCCCCEEecCCCEEEECCCCCC-CCCCCCCcCCCCEEEECCHHHHHH----HHHHHhhcCCCeEEEECCCHHHHHHH
Confidence 221 1 224 999999999988 578899987677776655431100 00000012468999999999999999
Q ss_pred HHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccch
Q psy4525 169 RILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARP 248 (388)
Q Consensus 169 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 248 (388)
..|. +.+ .+|+++.+.+.+..+..++++.
T Consensus 154 ~~l~--------------------~~g-~~Vtli~~~~~~~~~~~~~~~~------------------------------ 182 (427)
T TIGR03385 154 EALR--------------------ERG-KNVTLIHRSERILNKLFDEEMN------------------------------ 182 (427)
T ss_pred HHHH--------------------hCC-CcEEEEECCcccCccccCHHHH------------------------------
Confidence 9775 233 4799999887652221111211
Q ss_pred hhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccC-
Q psy4525 249 RKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCV- 327 (388)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~- 327 (388)
+.+.+.+. +.||+++++..++++..+ +.+ +.+ .+++++++|.||+|+|++|+..
T Consensus 183 -~~~~~~l~------------~~gV~v~~~~~v~~i~~~--~~~--v~~--------~~g~~i~~D~vi~a~G~~p~~~~ 237 (427)
T TIGR03385 183 -QIVEEELK------------KHEINLRLNEEVDSIEGE--ERV--KVF--------TSGGVYQADMVILATGIKPNSEL 237 (427)
T ss_pred -HHHHHHHH------------HcCCEEEeCCEEEEEecC--CCE--EEE--------cCCCEEEeCEEEECCCccCCHHH
Confidence 11222222 579999999999999743 333 222 2345799999999999999963
Q ss_pred --CCCCcccCCCccccCCC
Q psy4525 328 --DSDIPFNEKSCTVIPKE 344 (388)
Q Consensus 328 --~~~l~~~~~~gi~l~~~ 344 (388)
..++.+++++++.+|+.
T Consensus 238 l~~~gl~~~~~G~i~vd~~ 256 (427)
T TIGR03385 238 AKDSGLKLGETGAIWVNEK 256 (427)
T ss_pred HHhcCcccCCCCCEEECCC
Confidence 14566666666777654
No 86
>KOG2495|consensus
Probab=99.73 E-value=5e-17 Score=150.95 Aligned_cols=268 Identities=16% Similarity=0.147 Sum_probs=155.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcchhHHHHHHHHhhcCC--CcEEEceE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPEVKNVINTFTKTGDNP--RVNFYGNI 87 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~~~~~~~~~~~~~~~~--~i~~~~~~ 87 (388)
.++++|||+|+|.+|++++..|-. ..++|++++..+++--.+ ...+.-+..+.+.+.+.......+. +++++...
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldt--s~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAe 130 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDT--SLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAE 130 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccc--cccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEecc
Confidence 356899999999999999999998 899999999876642221 1111011223455666666555544 45555333
Q ss_pred EEEEE----------eeecc----cccccCEEEEeeCCCCCCCCCCCCCCCC-----Ceeeccccccccc------CCCC
Q psy4525 88 CLGQD----------ISLGD----LTNAYHAVVLTYGADNDKKLNIPGEDGK-----NIISARSFVGWYN------GLPE 142 (388)
Q Consensus 88 ~v~~~----------~~~~~----~~~~yd~lvlAtG~~~~~~~~i~g~~~~-----~v~~~~~~~~~~~------~~~~ 142 (388)
.+..+ ++... ....||+||+|+|+.+ ..+++||..-. .+.++..+...+- ..+.
T Consensus 131 c~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~-~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~ 209 (491)
T KOG2495|consen 131 CTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEP-NTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPG 209 (491)
T ss_pred cEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCC-CCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCC
Confidence 32211 11111 1237999999999999 48999985421 1222222110000 0111
Q ss_pred ccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhc
Q psy4525 143 DASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTK 222 (388)
Q Consensus 143 ~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~ 222 (388)
... +....-.+++|||||++|+|+|.+|+..+++=-.+.++. + ..--+||++...+
T Consensus 210 l~~-eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~-----l--~~~i~vtLiEA~d---------------- 265 (491)
T KOG2495|consen 210 LSD-EERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPE-----L--KKDIKVTLIEAAD---------------- 265 (491)
T ss_pred CCh-HHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhc-----c--hhheEEEeeccch----------------
Confidence 000 112223479999999999999999973322100000000 0 0112466554443
Q ss_pred CCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCcc
Q psy4525 223 LPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQA 302 (388)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~ 302 (388)
..|+.+.+++.++..+... +.+|.++.++.++.+... .+...+
T Consensus 266 --------------------~iL~mFdkrl~~yae~~f~--------~~~I~~~~~t~Vk~V~~~------~I~~~~--- 308 (491)
T KOG2495|consen 266 --------------------HILNMFDKRLVEYAENQFV--------RDGIDLDTGTMVKKVTEK------TIHAKT--- 308 (491)
T ss_pred --------------------hHHHHHHHHHHHHHHHHhh--------hccceeecccEEEeecCc------EEEEEc---
Confidence 3345566777776665543 689999999999988631 222221
Q ss_pred ccCCceeEEecceEEEccccCCccCC----CCCcccCCCccccCC
Q psy4525 303 LVTEDTELIPSGIAFRSIGYQSRCVD----SDIPFNEKSCTVIPK 343 (388)
Q Consensus 303 ~~~~~~~~l~~D~Vi~a~G~~p~~~~----~~l~~~~~~gi~l~~ 343 (388)
..|+-+++|+-++|||||..|.+.. ..++-..++|+.+|+
T Consensus 309 -~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L~vDE 352 (491)
T KOG2495|consen 309 -KDGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGLAVDE 352 (491)
T ss_pred -CCCceeeecceEEEecCCCCCchhhhhHhhcCCccCceeeeeec
Confidence 1455589999999999999988752 233222234777664
No 87
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.60 E-value=1.5e-14 Score=141.24 Aligned_cols=267 Identities=16% Similarity=0.128 Sum_probs=158.7
Q ss_pred EEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCc---eeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE-
Q psy4525 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGL---VRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ- 91 (388)
Q Consensus 16 vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~---~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~- 91 (388)
++|||+|++|+++|..+++..+..+++++..+...... +.+.+.........+..... ...+.+++++.++.+..
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~v~~i 79 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-FNRATGIDVRTGTEVTSI 79 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-hHHhhCCEEeeCCEEEEe
Confidence 58999999999999999987778889888776543211 11111000111111111111 11345777777665532
Q ss_pred -----EeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHH
Q psy4525 92 -----DISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMD 166 (388)
Q Consensus 92 -----~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e 166 (388)
.+.+.+.+..||+|++|||+.+. .++ +....++++.+.+...... . ......++++|+|+|..|+|
T Consensus 80 d~~~~~v~~~~g~~~yd~LvlatGa~~~-~~~--~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~v~vvG~G~~gle 150 (415)
T COG0446 80 DPENKVVLLDDGEIEYDYLVLATGARPR-PPP--ISDWEGVVTLRLREDAEAL----K--GGAEPPKDVVVVGAGPIGLE 150 (415)
T ss_pred cCCCCEEEECCCcccccEEEEcCCCccc-CCC--ccccCceEEECCHHHHHHH----H--HHHhccCeEEEECCcHHHHH
Confidence 24444455589999999999884 444 4444555555444321110 0 01111589999999999999
Q ss_pred HHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhcccc
Q psy4525 167 VARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLA 246 (388)
Q Consensus 167 ~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 246 (388)
+|..+. +.| .+|+++.+.+++...+..++
T Consensus 151 ~A~~~~--------------------~~G-~~v~l~e~~~~~~~~~~~~~------------------------------ 179 (415)
T COG0446 151 AAEAAA--------------------KRG-KKVTLIEAADRLGGQLLDPE------------------------------ 179 (415)
T ss_pred HHHHHH--------------------HcC-CeEEEEEcccccchhhhhHH------------------------------
Confidence 999776 345 57999998877644322111
Q ss_pred chhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeE-EEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 247 RPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITG-INFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~-v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
..+.+.+.+. ..||+++++..+.++....+..... + ....+..+++|++++++|.+||
T Consensus 180 -~~~~~~~~l~------------~~gi~~~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 180 -VAEELAELLE------------KYGVELLLGTKVVGVEGKGNTLVVERV--------VGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred -HHHHHHHHHH------------HCCcEEEeCCceEEEEcccCcceeeEE--------EEeCCcEEEeeEEEEeeccccc
Confidence 1122223332 6789999999999998643222211 1 2455678999999999999998
Q ss_pred cCC--CCC--cccCCCccccCCCCCCeecchhhHHhHHHHHHc
Q psy4525 326 CVD--SDI--PFNEKSCTVIPKEGVPVVTWEGWKAIDKEETER 364 (388)
Q Consensus 326 ~~~--~~l--~~~~~~gi~l~~~~~~~~~~~~w~~~~~~~~~~ 364 (388)
... ... .....+.+.+|+........+.+...|+.+...
T Consensus 239 ~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~ 281 (415)
T COG0446 239 VVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPA 281 (415)
T ss_pred HHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeec
Confidence 642 121 233333477776665432334555556555543
No 88
>KOG1346|consensus
Probab=99.42 E-value=3.4e-13 Score=124.81 Aligned_cols=287 Identities=16% Similarity=0.127 Sum_probs=160.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC-C-------CceeeCCCCCCc-----------------chhH
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP-F-------GLVRYGVAPDHP-----------------EVKN 67 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~-g-------g~~~~g~~p~~~-----------------~~~~ 67 (388)
....+|||+|.+..+++..++.+.++.++.+|..++.. + -+|.|+- |... .+..
T Consensus 178 hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~d-pn~~k~lrfkqwsGkeRsiffepd~ 256 (659)
T KOG1346|consen 178 HVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGD-PNSAKKLRFKQWSGKERSIFFEPDG 256 (659)
T ss_pred cCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCC-CChhhheeecccCCccceeEecCCc
Confidence 45689999999999998888887788899999766542 2 2444443 2110 0011
Q ss_pred HHHHHHH--hhcCCCcEEEceEEEE-E-----Eeeeccccc-ccCEEEEeeCCCCCCCCC-CCCCCCCCeeecccccccc
Q psy4525 68 VINTFTK--TGDNPRVNFYGNICLG-Q-----DISLGDLTN-AYHAVVLTYGADNDKKLN-IPGEDGKNIISARSFVGWY 137 (388)
Q Consensus 68 ~~~~~~~--~~~~~~i~~~~~~~v~-~-----~~~~~~~~~-~yd~lvlAtG~~~~~~~~-i~g~~~~~v~~~~~~~~~~ 137 (388)
+.-.-++ ...+-|+-+..+..+. . .+.+.++.. .||+++||||..|. .+. +... .+.+. +-...+
T Consensus 257 FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk-~l~~~~~A-~~evk---~kit~f 331 (659)
T KOG1346|consen 257 FFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPK-KLQVFEEA-SEEVK---QKITYF 331 (659)
T ss_pred ceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcc-cchhhhhc-CHHhh---hheeEE
Confidence 1100111 1223355555443332 1 255666544 89999999999884 443 3211 11110 000111
Q ss_pred cCCCCccccCcC-CCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHH
Q psy4525 138 NGLPEDASLDLS-LDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKE 216 (388)
Q Consensus 138 ~~~~~~~~~~~~-~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~e 216 (388)
....++..+... ..-+.|.|||+|+.|-|+|..|.+ ..+..+ .+|+-+.....-+.
T Consensus 332 r~p~DF~rlek~~aek~siTIiGnGflgSELacsl~r----------------k~r~~g-~eV~QvF~Ek~nm~------ 388 (659)
T KOG1346|consen 332 RYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKR----------------KYRNEG-VEVHQVFEEKYNME------ 388 (659)
T ss_pred ecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHH----------------hhhccC-cEEEEeecccCChh------
Confidence 111122222111 123789999999999999998861 112233 35766543322111
Q ss_pred HHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEE
Q psy4525 217 FREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGIN 296 (388)
Q Consensus 217 l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~ 296 (388)
..|.++++++......+.||.++.+..+..+.... +++ .++
T Consensus 389 -------------------------------------kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~-~nl-~lk 429 (659)
T KOG1346|consen 389 -------------------------------------KILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCC-KNL-VLK 429 (659)
T ss_pred -------------------------------------hhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhc-cce-EEE
Confidence 11111111111112347899999998888776432 221 232
Q ss_pred EccCccccCCceeEEecceEEEccccCCccC---CCCCcccCCC-ccccCCCCCCeecchhhHHhHHHHHHccccCCCCc
Q psy4525 297 FANQQALVTEDTELIPSGIAFRSIGYQSRCV---DSDIPFNEKS-CTVIPKEGVPVVTWEGWKAIDKEETERGKLKGKPR 372 (388)
Q Consensus 297 ~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~---~~~l~~~~~~-gi~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 372 (388)
..+|.++.+|+||+|+|-.||.. .++|.+|+.. |..+|..=- ..-+.|.+.|++--.-|. .|+.|
T Consensus 430 --------L~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~--ar~NvwvAGdaacF~D~~-LGrRR 498 (659)
T KOG1346|consen 430 --------LSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELK--ARENVWVAGDAACFEDGV-LGRRR 498 (659)
T ss_pred --------ecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheee--cccceeeecchhhhhccc-cccee
Confidence 46677999999999999999985 3677777654 566654321 345788888877666543 67666
Q ss_pred cccCCH
Q psy4525 373 EKIISI 378 (388)
Q Consensus 373 ~k~~~~ 378 (388)
--+-++
T Consensus 499 Vehhdh 504 (659)
T KOG1346|consen 499 VEHHDH 504 (659)
T ss_pred cccccc
Confidence 554443
No 89
>PRK09897 hypothetical protein; Provisional
Probab=99.22 E-value=5.2e-10 Score=111.71 Aligned_cols=39 Identities=26% Similarity=0.463 Sum_probs=33.8
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
++|+||||||+|+++|..|.+.....+|+|||+...+|.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~ 40 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGV 40 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCc
Confidence 689999999999999999988444579999999877773
No 90
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.13 E-value=7.3e-09 Score=98.41 Aligned_cols=40 Identities=28% Similarity=0.322 Sum_probs=38.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
.++++|||||+||++||..|+. .|++|+++|+++.+||.+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~--~G~~v~LVEKepsiGGrm 163 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELAD--MGFKVYLVEKEPSIGGRM 163 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHH--cCCeEEEEecCCcccccH
Confidence 4789999999999999999999 999999999999999976
No 91
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.13 E-value=7.8e-09 Score=99.15 Aligned_cols=45 Identities=29% Similarity=0.403 Sum_probs=36.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCC-CcEEEEcCCCCCCCceeeC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQ-STVDIYEKLPVPFGLVRYG 57 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g-~~v~lie~~~~~gg~~~~g 57 (388)
+++|+|||+|++|+..|.+|.+.... ..|.|||+.+.+|+-+.|.
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs 46 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYS 46 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCC
Confidence 36899999999999999999986432 3499999999888666553
No 92
>KOG2755|consensus
Probab=99.12 E-value=1.2e-10 Score=102.07 Aligned_cols=162 Identities=21% Similarity=0.255 Sum_probs=96.7
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCc----------EEE
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRV----------NFY 84 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i----------~~~ 84 (388)
+.+|||||.||.+||..|+...+..+|+++..++.+-..-+| ..+. ++++++.+ +|.
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~---------~~i~----~ylekfdv~eq~~~elg~~f~ 67 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNY---------QKIG----QYLEKFDVKEQNCHELGPDFR 67 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhH---------HHHH----HHHHhcCccccchhhhcccHH
Confidence 368999999999999999998788999999877543211111 0111 11111111 111
Q ss_pred --ceEEE-----EEEeeecccc-cccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEE
Q psy4525 85 --GNICL-----GQDISLGDLT-NAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEAT 156 (388)
Q Consensus 85 --~~~~v-----~~~~~~~~~~-~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vv 156 (388)
.+..+ ...+.++.+. ..|++|++|||+.|. +-..|.+ +.|..-++-..... + . ....+.|.|.
T Consensus 68 ~~~~~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPk--lq~E~~n-~~Iv~irDtDsaQl-l-q----~kl~kaK~Vl 138 (334)
T KOG2755|consen 68 RFLNDVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPK--LQVEGIN-PKIVGIRDTDSAQL-L-Q----CKLVKAKIVL 138 (334)
T ss_pred HHHHhhhhhccccceEEecCCceeeEEEEEEecCCCcc--eeecCCC-ceEEEEecCcHHHH-H-H----HHHhhcceEE
Confidence 00000 0123334443 489999999999873 3344422 33333322211000 0 0 1234579999
Q ss_pred EEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHh
Q psy4525 157 ILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMT 221 (388)
Q Consensus 157 VIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~ 221 (388)
|+|.|-+++|++.+|. .-+|++....+.+...|.++-..++.
T Consensus 139 ilgnGgia~El~yElk-----------------------~~nv~w~ikd~~IsaTFfdpGaaef~ 180 (334)
T KOG2755|consen 139 ILGNGGIAMELTYELK-----------------------ILNVTWKIKDEGISATFFDPGAAEFY 180 (334)
T ss_pred EEecCchhHHHHHHhh-----------------------cceeEEEecchhhhhcccCccHHHHh
Confidence 9999999999999774 23699988888887777777666544
No 93
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.08 E-value=2.1e-11 Score=107.20 Aligned_cols=128 Identities=23% Similarity=0.324 Sum_probs=74.5
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCc-----c-hhHHH--H--HHHHhhcCCCcEEE
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHP-----E-VKNVI--N--TFTKTGDNPRVNFY 84 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~-----~-~~~~~--~--~~~~~~~~~~i~~~ 84 (388)
||+||||||||++||..|++ .+.+++++|+.+..... .... +... . ..... . .+.+.+...+++++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~--~~~~v~ii~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 76 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR--PGAKVLIIEKSPGTPYN-SGCI-PSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIR 76 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TTSEEEEESSSSHHHHH-HSHH-HHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEE
T ss_pred CEEEEecHHHHHHHHHHHhc--CCCeEEEEecccccccc-cccc-cccccccccccccccccccccccccccccceEEEe
Confidence 69999999999999999998 99999999887543211 0000 1000 0 00111 1 33333445677775
Q ss_pred ceEEE-EEEe----------e-----e-cccccccCEEEEeeCCCCCCCCCCCCCC----CCCeeecccccccccCCCCc
Q psy4525 85 GNICL-GQDI----------S-----L-GDLTNAYHAVVLTYGADNDKKLNIPGED----GKNIISARSFVGWYNGLPED 143 (388)
Q Consensus 85 ~~~~v-~~~~----------~-----~-~~~~~~yd~lvlAtG~~~~~~~~i~g~~----~~~v~~~~~~~~~~~~~~~~ 143 (388)
.+..+ ..+. . . +..+..||+||+|||+.+ +.+++||.+ ...+.++..+...
T Consensus 77 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~-~~~~i~g~~~~~~~~~~~~~~~~~~~------- 148 (201)
T PF07992_consen 77 LNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRP-RTPNIPGEEVAYFLRGVDDAQRFLEL------- 148 (201)
T ss_dssp HHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEE-EEESSTTTTTECBTTSEEHHHHHHTH-------
T ss_pred eccccccccccccccccCcccceeeccCCceEecCCeeeecCcccc-ceeecCCCcccccccccccccccccc-------
Confidence 43332 1110 0 1 112248999999999886 577888863 1234444444322
Q ss_pred cccCcCCCCCeEEEEc
Q psy4525 144 ASLDLSLDCEEATILG 159 (388)
Q Consensus 144 ~~~~~~~~~~~vvVIG 159 (388)
...+++++|||
T Consensus 149 -----~~~~~~v~VvG 159 (201)
T PF07992_consen 149 -----LESPKRVAVVG 159 (201)
T ss_dssp -----SSTTSEEEEES
T ss_pred -----ccccccccccc
Confidence 12245999999
No 94
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.03 E-value=2.7e-09 Score=99.90 Aligned_cols=100 Identities=19% Similarity=0.266 Sum_probs=72.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC--------ceeeC---CC-------C-------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG--------LVRYG---VA-------P------------- 60 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg--------~~~~g---~~-------p------------- 60 (388)
..++|+|||||||||.||..+.+ .|.+|+|||+.+.+|- .|+.. .+ |
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~--~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~f 79 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAK--AGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARF 79 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhh--cCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhC
Confidence 45799999999999999999999 9999999999988763 22110 00 1
Q ss_pred --------------------------CCcchhHHHHHHHHhhcCCCcEEEceEEEEE--------Eeeeccc-ccccCEE
Q psy4525 61 --------------------------DHPEVKNVINTFTKTGDNPRVNFYGNICLGQ--------DISLGDL-TNAYHAV 105 (388)
Q Consensus 61 --------------------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~--------~~~~~~~-~~~yd~l 105 (388)
.......+.+.+...+++.|++++.++.+.. .+++.+. ...+|.|
T Consensus 80 t~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~l 159 (408)
T COG2081 80 TPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSL 159 (408)
T ss_pred CHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEE
Confidence 1112456777777778888999998888742 1344444 3589999
Q ss_pred EEeeCCCC
Q psy4525 106 VLTYGADN 113 (388)
Q Consensus 106 vlAtG~~~ 113 (388)
|||||..+
T Consensus 160 ilAtGG~S 167 (408)
T COG2081 160 ILATGGKS 167 (408)
T ss_pred EEecCCcC
Confidence 99999544
No 95
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.93 E-value=2.6e-09 Score=103.54 Aligned_cols=98 Identities=18% Similarity=0.205 Sum_probs=56.9
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC--------CceeeC---C-----------C------------
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF--------GLVRYG---V-----------A------------ 59 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g--------g~~~~g---~-----------~------------ 59 (388)
+||+|||||||||.||..+++ .|.+|+|+|+++.+| |.++.. . .
T Consensus 1 ydviIIGgGaAGl~aA~~aa~--~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~ 78 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAE--KGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFS 78 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHH--TT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCC
Confidence 689999999999999999999 899999999998775 333110 0 0
Q ss_pred ------------------------CCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE---------eee-cccccccCEE
Q psy4525 60 ------------------------PDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD---------ISL-GDLTNAYHAV 105 (388)
Q Consensus 60 ------------------------p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~---------~~~-~~~~~~yd~l 105 (388)
|......++.+.+...+++.++++++++.|... +.. ......+|+|
T Consensus 79 ~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~v 158 (409)
T PF03486_consen 79 PEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAV 158 (409)
T ss_dssp HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEE
T ss_pred HHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEE
Confidence 111124566677777778889999988887422 333 2233478999
Q ss_pred EEeeCCCC
Q psy4525 106 VLTYGADN 113 (388)
Q Consensus 106 vlAtG~~~ 113 (388)
|||||..+
T Consensus 159 ILAtGG~S 166 (409)
T PF03486_consen 159 ILATGGKS 166 (409)
T ss_dssp EE----SS
T ss_pred EEecCCCC
Confidence 99999765
No 96
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.88 E-value=1.3e-08 Score=75.57 Aligned_cols=79 Identities=18% Similarity=0.250 Sum_probs=58.3
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEeccc
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNE 233 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~ 233 (388)
+++|||||++|+|+|..|+ ..+ .+||++.|++.+. +..+++++
T Consensus 1 ~vvViGgG~ig~E~A~~l~--------------------~~g-~~vtli~~~~~~~-~~~~~~~~--------------- 43 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALA--------------------ELG-KEVTLIERSDRLL-PGFDPDAA--------------- 43 (80)
T ss_dssp EEEEESSSHHHHHHHHHHH--------------------HTT-SEEEEEESSSSSS-TTSSHHHH---------------
T ss_pred CEEEECcCHHHHHHHHHHH--------------------HhC-cEEEEEeccchhh-hhcCHHHH---------------
Confidence 6899999999999999886 233 5899999999876 43333332
Q ss_pred ccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEcc
Q psy4525 234 QLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFAN 299 (388)
Q Consensus 234 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~ 299 (388)
+.+.+.+. +.||++++++.++++..++++ +. +++.+
T Consensus 44 ----------------~~~~~~l~------------~~gV~v~~~~~v~~i~~~~~~-~~-V~~~~ 79 (80)
T PF00070_consen 44 ----------------KILEEYLR------------KRGVEVHTNTKVKEIEKDGDG-VE-VTLED 79 (80)
T ss_dssp ----------------HHHHHHHH------------HTTEEEEESEEEEEEEEETTS-EE-EEEET
T ss_pred ----------------HHHHHHHH------------HCCCEEEeCCEEEEEEEeCCE-EE-EEEec
Confidence 22233333 579999999999999987666 66 77644
No 97
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.72 E-value=9.3e-08 Score=87.29 Aligned_cols=99 Identities=23% Similarity=0.298 Sum_probs=67.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-ee--------------------CCCCCC--------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RY--------------------GVAPDH-------- 62 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~--------------------g~~p~~-------- 62 (388)
..+||+||||||||++||..|++ .|++|+|+|+.+.+||.+ .- ++ |..
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~--~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv-~~~~~~~g~~~ 100 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAK--AGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGI-RYKEVEDGLYV 100 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHh--CCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCC-CceeecCccee
Confidence 35799999999999999999999 999999999998876532 11 11 100
Q ss_pred cchhHHHHHHHHhhcCCCcEEEceEEEEEEeeecc----------------------cccccCEEEEeeCCCC
Q psy4525 63 PEVKNVINTFTKTGDNPRVNFYGNICLGQDISLGD----------------------LTNAYHAVVLTYGADN 113 (388)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~~~~~~----------------------~~~~yd~lvlAtG~~~ 113 (388)
....++...+.+.+.+.|++++.++.+..-...++ ....++.||.|||+..
T Consensus 101 vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 101 ADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred ccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 12345566677777778998887766532111000 1125789999999755
No 98
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.62 E-value=3.4e-07 Score=89.19 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=31.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
.+||+|||+|++|+.+|..+.+ .|.+|++||+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~--~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAE--AGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHH--CCCcEEEEECCC
Confidence 4799999999999999999999 899999999863
No 99
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.61 E-value=1.7e-07 Score=91.32 Aligned_cols=100 Identities=22% Similarity=0.267 Sum_probs=70.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee-C-CC--------CCC-------------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY-G-VA--------PDH------------------- 62 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~-g-~~--------p~~------------------- 62 (388)
..+||+||||||||++||..|++ .|++|+++|+.+.+|..... + +. |..
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~--~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~ 79 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAK--AGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEK 79 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHH--cCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCc
Confidence 35899999999999999999999 89999999998877642211 0 00 000
Q ss_pred -----------c-chhHHHHHHHHhhcCCCcEEEceEEEEEEeeecc----------cccccCEEEEeeCCCC
Q psy4525 63 -----------P-EVKNVINTFTKTGDNPRVNFYGNICLGQDISLGD----------LTNAYHAVVLTYGADN 113 (388)
Q Consensus 63 -----------~-~~~~~~~~~~~~~~~~~i~~~~~~~v~~~~~~~~----------~~~~yd~lvlAtG~~~ 113 (388)
. ....+-+++.+.+.+.|.+++.++.+......++ .+..++.||.|+|+..
T Consensus 80 ~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 80 VAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred eEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence 0 1344556677788888999988877643322211 1347899999999765
No 100
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.58 E-value=4.2e-07 Score=82.73 Aligned_cols=75 Identities=20% Similarity=0.270 Sum_probs=54.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC-ceee--------------------CCCCCC--------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG-LVRY--------------------GVAPDH-------- 62 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg-~~~~--------------------g~~p~~-------- 62 (388)
..+||+||||||||++||..|++ .|.+|+|+|+.+.+|| .|.- ++ |..
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~--~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi-~~~~~~~g~~~ 96 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK--NGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGI-RYEDEGDGYVV 96 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCC-CeeeccCceEE
Confidence 46899999999999999999999 8999999999988753 2211 11 110
Q ss_pred cchhHHHHHHHHhhcCCCcEEEceEEE
Q psy4525 63 PEVKNVINTFTKTGDNPRVNFYGNICL 89 (388)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~i~~~~~~~v 89 (388)
....++...+.+.+.+.+++++.++.+
T Consensus 97 ~~~~el~~~L~~~a~e~GV~I~~~t~V 123 (254)
T TIGR00292 97 ADSAEFISTLASKALQAGAKIFNGTSV 123 (254)
T ss_pred eeHHHHHHHHHHHHHHcCCEEECCcEE
Confidence 012355566666677788888877665
No 101
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.50 E-value=5e-07 Score=84.01 Aligned_cols=98 Identities=16% Similarity=0.120 Sum_probs=65.7
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee-------------------------------C---CC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY-------------------------------G---VA 59 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~-------------------------------g---~~ 59 (388)
+||+||||||+|+++|..|++ .|.+|+|+|+.+.++..+.. + ..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~--~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLAD--KGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEI 78 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEe
Confidence 589999999999999999999 89999999998765421100 0 00
Q ss_pred --CCC----cchhHHHHHHHHhhcCCCcEEEceEEEEEE--------eeecc--cccccCEEEEeeCCCC
Q psy4525 60 --PDH----PEVKNVINTFTKTGDNPRVNFYGNICLGQD--------ISLGD--LTNAYHAVVLTYGADN 113 (388)
Q Consensus 60 --p~~----~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~--------~~~~~--~~~~yd~lvlAtG~~~ 113 (388)
+.. .....+...+.+.+.+.+++++.++.+... +.... ....+|+||+|+|...
T Consensus 79 ~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 79 PIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred ccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 000 123455566777777788988877665321 22221 2237899999999754
No 102
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.49 E-value=1.8e-07 Score=66.88 Aligned_cols=36 Identities=31% Similarity=0.392 Sum_probs=33.2
Q ss_pred EECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee
Q psy4525 18 IVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 18 IIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~ 55 (388)
|||||++||++|..|++ .+.+|+|+|+.+.+||.+.
T Consensus 1 IiGaG~sGl~aA~~L~~--~g~~v~v~E~~~~~GG~~~ 36 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAK--AGYRVTVFEKNDRLGGRAR 36 (68)
T ss_dssp EES-SHHHHHHHHHHHH--TTSEEEEEESSSSSSGGGC
T ss_pred CEeeCHHHHHHHHHHHH--CCCcEEEEecCcccCccee
Confidence 89999999999999999 8999999999999999874
No 103
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.49 E-value=9.4e-07 Score=87.01 Aligned_cols=37 Identities=24% Similarity=0.186 Sum_probs=34.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
.+||+||||||||++||..|++ .|++|+|+|+.+.++
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~--~G~~V~llEr~~~~g 41 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAR--EGAQVLVIERGNSAG 41 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHh--CCCeEEEEEcCCCCC
Confidence 5899999999999999999999 899999999986654
No 104
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.48 E-value=1.2e-06 Score=64.88 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=54.4
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
+|+|||||+.|+.+|..|.+ .+.+|+++++.+.+. .....+....+.+.+++.|+++++++.+..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~--~g~~vtli~~~~~~~----------~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~ 65 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE--LGKEVTLIERSDRLL----------PGFDPDAAKILEEYLRKRGVEVHTNTKVKE 65 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TTSEEEEEESSSSSS----------TTSSHHHHHHHHHHHHHTTEEEEESEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHH--hCcEEEEEeccchhh----------hhcCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 58999999999999999999 899999999997753 123455677778888888999999988754
No 105
>PRK06847 hypothetical protein; Provisional
Probab=98.47 E-value=1.2e-06 Score=84.68 Aligned_cols=36 Identities=31% Similarity=0.372 Sum_probs=33.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
.+++|+||||||+|+++|..|++ .|++|+|+|+.+.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~--~g~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRR--AGIAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCC
Confidence 35799999999999999999999 8999999998764
No 106
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.45 E-value=1e-06 Score=76.34 Aligned_cols=41 Identities=37% Similarity=0.495 Sum_probs=33.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
..+||+||||||||++||.+|++ .|++|.+||+...+||..
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~--~g~kV~v~E~~~~~GGg~ 56 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAK--AGLKVAVIERKLSPGGGM 56 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHH--HTS-EEEEESSSS-BTTT
T ss_pred ccCCEEEECCChhHHHHHHHHHH--CCCeEEEEecCCCCCccc
Confidence 35799999999999999999999 799999999998887543
No 107
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.43 E-value=1.7e-06 Score=84.81 Aligned_cols=91 Identities=23% Similarity=0.233 Sum_probs=71.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
.-+++++|||||+.|+..|..+++ .|.+|||+|+.+.+- | ...+++.+.+.+.+++.++.++.++.+.
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~--LG~~VTiie~~~~iL--------p--~~D~ei~~~~~~~l~~~gv~i~~~~~v~ 238 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAA--LGSKVTVVERGDRIL--------P--GEDPEISKELTKQLEKGGVKILLNTKVT 238 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCC--------C--cCCHHHHHHHHHHHHhCCeEEEccceEE
Confidence 457899999999999999999999 999999999997752 4 2456778888888888889999888764
Q ss_pred EE--------eeecccc---cccCEEEEeeCCCC
Q psy4525 91 QD--------ISLGDLT---NAYHAVVLTYGADN 113 (388)
Q Consensus 91 ~~--------~~~~~~~---~~yd~lvlAtG~~~ 113 (388)
.. +..++.. ..+|+|++|+|..|
T Consensus 239 ~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~P 272 (454)
T COG1249 239 AVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKP 272 (454)
T ss_pred EEEecCCeEEEEEecCCCCEEEeeEEEEccCCcc
Confidence 32 2222222 35999999999555
No 108
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.43 E-value=1.5e-06 Score=84.49 Aligned_cols=97 Identities=19% Similarity=0.273 Sum_probs=63.1
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCC-------------------------CCC-------
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVA-------------------------PDH------- 62 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~-------------------------p~~------- 62 (388)
||+||||||||+++|..|.+ .|.+|+|+|+.+..++...+++. +..
T Consensus 1 DviIiGaG~AGl~~A~~la~--~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELAR--PGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTA 78 (388)
T ss_pred CEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCc
Confidence 69999999999999999998 89999999998765542211110 100
Q ss_pred ---cchhHHHHHHHHhhcCCCcEEEceEEEEE--------Eeeeccc-ccccCEEEEeeCCCC
Q psy4525 63 ---PEVKNVINTFTKTGDNPRVNFYGNICLGQ--------DISLGDL-TNAYHAVVLTYGADN 113 (388)
Q Consensus 63 ---~~~~~~~~~~~~~~~~~~i~~~~~~~v~~--------~~~~~~~-~~~yd~lvlAtG~~~ 113 (388)
.....+.+.+.+.+.+.+++++....+.. .++..+. ...++.||.|+|..+
T Consensus 79 ~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 79 YGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred eeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 11234555566666666777764433221 1223333 347899999999765
No 109
>PRK10015 oxidoreductase; Provisional
Probab=98.42 E-value=1.5e-06 Score=85.58 Aligned_cols=37 Identities=24% Similarity=0.207 Sum_probs=33.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
.+||+||||||||++||..|++ .|++|+++|+.+.+|
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~--~G~~VlliEr~~~~g 41 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMAR--AGLDVLVIERGDSAG 41 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCCC
Confidence 5899999999999999999999 899999999986653
No 110
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.42 E-value=1.3e-06 Score=75.35 Aligned_cols=40 Identities=33% Similarity=0.465 Sum_probs=36.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC-ce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG-LV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg-~~ 54 (388)
..||+||||||+||+||.+|++ .|++|++||++-.+|| .|
T Consensus 30 esDViIVGaGPsGLtAAyyLAk--~g~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAK--AGLKVAIFERKLSFGGGIW 70 (262)
T ss_pred hccEEEECcCcchHHHHHHHHh--CCceEEEEEeecccCCccc
Confidence 4699999999999999999999 8999999999988754 44
No 111
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.40 E-value=7.6e-07 Score=90.92 Aligned_cols=40 Identities=33% Similarity=0.342 Sum_probs=36.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
..||||||+|+||++||..+++ .|.+|+|+|+.+..||..
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~--~G~~v~llEk~~~~gG~~ 48 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARK--LGLDVVVLEKEPVFGGTT 48 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHH--cCCeEEEEecCCCCCCcc
Confidence 5799999999999999999999 899999999998887764
No 112
>PLN02463 lycopene beta cyclase
Probab=98.38 E-value=3e-06 Score=83.53 Aligned_cols=100 Identities=20% Similarity=0.210 Sum_probs=64.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC-----CCcee-----eCCC----------------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP-----FGLVR-----YGVA---------------------- 59 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~-----gg~~~-----~g~~---------------------- 59 (388)
..+||+||||||||+++|..|.+ .|++|+++|+.+.. +|.|. .++.
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~--~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~ 104 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSE--AGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDL 104 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHH--CCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccc
Confidence 35799999999999999999999 89999999986532 23221 0000
Q ss_pred --CCC-cchhHHHHHHHHhhcCCCcEEEceEEEEE-------Eeeeccc-ccccCEEEEeeCCCC
Q psy4525 60 --PDH-PEVKNVINTFTKTGDNPRVNFYGNICLGQ-------DISLGDL-TNAYHAVVLTYGADN 113 (388)
Q Consensus 60 --p~~-~~~~~~~~~~~~~~~~~~i~~~~~~~v~~-------~~~~~~~-~~~yd~lvlAtG~~~ 113 (388)
|+. ....++.+.+.+.+.+.+++++....... .++..++ ...+|.||.|+|..+
T Consensus 105 ~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 105 DRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred cCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCc
Confidence 000 12344555666666667888864322211 1333444 347899999999866
No 113
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.36 E-value=2.5e-06 Score=83.20 Aligned_cols=35 Identities=26% Similarity=0.221 Sum_probs=31.9
Q ss_pred EEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCc
Q psy4525 17 CIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGL 53 (388)
Q Consensus 17 vIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~ 53 (388)
+|||||+||++||..+++ .|.+|+|+|+.+.+|+.
T Consensus 1 vIIGgG~aGl~aAi~aa~--~G~~V~llEk~~~~G~k 35 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAR--EGLSVLLLEKNKKIGKK 35 (400)
T ss_pred CEEEEeHHHHHHHHHHHh--cCCcEEEEecCcccccc
Confidence 699999999999999999 89999999999877653
No 114
>PLN02661 Putative thiazole synthesis
Probab=98.33 E-value=3.6e-06 Score=79.22 Aligned_cols=39 Identities=41% Similarity=0.643 Sum_probs=34.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
..||+|||||++|+.||..|++. ++.+|+++|+...+||
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~-~g~kV~viEk~~~~GG 130 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKN-PNVKVAIIEQSVSPGG 130 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHc-CCCeEEEEecCccccc
Confidence 57999999999999999999962 4899999999987765
No 115
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.29 E-value=4.8e-06 Score=81.24 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=31.5
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
.+|+||||||||++||..|++ .|++|+|+|+.+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~--~G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLAS--AGIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHh--CCCcEEEEecCCC
Confidence 489999999999999999999 9999999998754
No 116
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.27 E-value=5.8e-06 Score=81.78 Aligned_cols=91 Identities=19% Similarity=0.223 Sum_probs=66.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++|+|||+|++|+.+|..+++ .|.+|+++++.+.+. |.. ..++.....+.+++.|++++.++.+..
T Consensus 156 ~~~~vvIIGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l--------~~~--~~~~~~~~~~~l~~~GI~i~~~~~V~~ 223 (438)
T PRK07251 156 LPERLGIIGGGNIGLEFAGLYNK--LGSKVTVLDAASTIL--------PRE--EPSVAALAKQYMEEDGITFLLNAHTTE 223 (438)
T ss_pred cCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCccC--------CCC--CHHHHHHHHHHHHHcCCEEEcCCEEEE
Confidence 35799999999999999999999 899999999986642 221 234555566777788999998765532
Q ss_pred E--------eeecccccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLGDLTNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~~~~~~yd~lvlAtG~~~~ 114 (388)
. +..++....||.||+|+|..|.
T Consensus 224 i~~~~~~v~v~~~g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 224 VKNDGDQVLVVTEDETYRFDALLYATGRKPN 254 (438)
T ss_pred EEecCCEEEEEECCeEEEcCEEEEeeCCCCC
Confidence 1 1112223479999999998774
No 117
>PRK06834 hypothetical protein; Provisional
Probab=98.23 E-value=1.2e-05 Score=80.39 Aligned_cols=36 Identities=31% Similarity=0.474 Sum_probs=32.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..++|+||||||+|+++|..|++ .|++|+|+|+.+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~--~G~~v~vlEr~~~ 37 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELAL--AGVDVAIVERRPN 37 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCC
Confidence 34799999999999999999999 8999999998754
No 118
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.22 E-value=4.4e-06 Score=84.99 Aligned_cols=40 Identities=30% Similarity=0.329 Sum_probs=36.5
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
..||+|||+|++|+++|..+++ .|.+|+|+|+.+.+||..
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~--~G~~v~llEk~~~~gG~~ 46 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAH--RGLSTVVVEKAPHYGGST 46 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCCCccc
Confidence 5799999999999999999999 899999999998877654
No 119
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.21 E-value=1.5e-06 Score=85.53 Aligned_cols=40 Identities=30% Similarity=0.372 Sum_probs=33.2
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY 56 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~ 56 (388)
|||||||||||++||..+++ .|.+|+|+|+.+.+||....
T Consensus 1 DVVVvGgG~aG~~AAi~AAr--~G~~VlLiE~~~~lGG~~t~ 40 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAAR--AGAKVLLIEKGGFLGGMATS 40 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHH--TTS-EEEE-SSSSSTGGGGG
T ss_pred CEEEECccHHHHHHHHHHHH--CCCEEEEEECCccCCCcceE
Confidence 79999999999999999999 89999999999999987643
No 120
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.21 E-value=9.3e-06 Score=79.05 Aligned_cols=37 Identities=24% Similarity=0.367 Sum_probs=33.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
+..++|+||||||+|+++|..|++ .|++|+|+|+.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~--~G~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALAD--AGLSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhc--CCCEEEEEeCCCC
Confidence 455799999999999999999999 8999999999753
No 121
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.20 E-value=1.3e-05 Score=79.21 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=33.0
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
...+||+||||||||++||..|++ .|++|+|+|+.+
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~--~G~~VlllEr~~ 72 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAK--GGIETFLIERKL 72 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh--CCCcEEEEecCC
Confidence 346899999999999999999999 999999999874
No 122
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.19 E-value=1.4e-05 Score=77.84 Aligned_cols=32 Identities=22% Similarity=0.462 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
+||+||||||||+++|..|++ .|++|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~--~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLAR--AGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCcEEEEECC
Confidence 589999999999999999999 89999999987
No 123
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.17 E-value=0.00011 Score=71.26 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
+|++|||+|++|+++|..+.+ .+.+|+++|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~--~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAE--AGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHH--CCCCEEEEeCCC
Confidence 489999999999999999999 899999999874
No 124
>KOG0029|consensus
Probab=98.16 E-value=3.2e-06 Score=84.02 Aligned_cols=44 Identities=25% Similarity=0.219 Sum_probs=40.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY 56 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~ 56 (388)
..+++|+|||||+|||+||..|.+ .|++|+|+|..+.+||.+..
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~--~G~~V~VLEARdRvGGRI~t 56 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQD--FGFDVLVLEARDRVGGRIYT 56 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHH--cCCceEEEeccCCcCceeEE
Confidence 456899999999999999999999 99999999999999998743
No 125
>PRK06184 hypothetical protein; Provisional
Probab=98.16 E-value=1.3e-05 Score=80.75 Aligned_cols=36 Identities=33% Similarity=0.605 Sum_probs=33.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
..+|+||||||+|+++|..|++ .|++|+|+|+.+.+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~--~Gi~v~viE~~~~~ 38 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELAR--RGVSFRLIEKAPEP 38 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCC
Confidence 4799999999999999999999 89999999987643
No 126
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.13 E-value=1.3e-05 Score=76.41 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=30.6
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
||+|||||++|+++|..|++ .|.+|+|+|+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~--~G~~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR--RGHSVTLLERGD 32 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH--TTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHH--CCCeEEEEeecc
Confidence 69999999999999999999 999999999983
No 127
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.12 E-value=1.8e-05 Score=78.72 Aligned_cols=91 Identities=19% Similarity=0.237 Sum_probs=67.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|++|+.+|..+.+ .|.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 169 ~~~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~ll--------~~--~d~e~~~~l~~~L~~~GI~i~~~~~V~~ 236 (458)
T PRK06912 169 IPSSLLIVGGGVIGCEFASIYSR--LGTKVTIVEMAPQLL--------PG--EDEDIAHILREKLENDGVKIFTGAALKG 236 (458)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCcC--------cc--ccHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence 35799999999999999999998 899999999886642 22 2345666677778888999998876532
Q ss_pred E------eee--ccc--ccccCEEEEeeCCCCC
Q psy4525 92 D------ISL--GDL--TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~------~~~--~~~--~~~yd~lvlAtG~~~~ 114 (388)
. +.. ++. ...+|.|++|+|..|.
T Consensus 237 i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 237 LNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred EEEcCCEEEEEECCceEEEEeCEEEEecCCccC
Confidence 1 111 111 2479999999997763
No 128
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.12 E-value=1.2e-05 Score=78.53 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=31.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCC--CCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLP--QSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~--g~~v~lie~~~~ 49 (388)
.++|+||||||+|+++|..|++ . |++|+|+|+.+.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~--~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQ--AAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhc--CCCCCEEEEEeCCCc
Confidence 3689999999999999999999 6 499999998753
No 129
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.12 E-value=1.9e-05 Score=78.94 Aligned_cols=90 Identities=14% Similarity=0.110 Sum_probs=66.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD 92 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 92 (388)
+++|+|||||++|+.+|..|++ .|.+|+++++.+.+. |.. ..++...+.+.+++.|++++.++.+...
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~--~g~~Vtli~~~~~il--------~~~--~~~~~~~l~~~l~~~gI~i~~~~~v~~i 247 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLAD--FGVEVTVVEAADRIL--------PTE--DAELSKEVARLLKKLGVRVVTGAKVLGL 247 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCeEEEEEecCccC--------CcC--CHHHHHHHHHHHHhcCCEEEeCcEEEEE
Confidence 5799999999999999999999 899999999886542 322 3445566667778889999988655321
Q ss_pred ----------eeeccc---ccccCEEEEeeCCCCC
Q psy4525 93 ----------ISLGDL---TNAYHAVVLTYGADND 114 (388)
Q Consensus 93 ----------~~~~~~---~~~yd~lvlAtG~~~~ 114 (388)
+...+. ...+|.||+|+|..|.
T Consensus 248 ~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 282 (472)
T PRK05976 248 TLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPN 282 (472)
T ss_pred EEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccC
Confidence 111122 2378999999998774
No 130
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.12 E-value=1.8e-05 Score=77.48 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=31.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
.++|+||||||+|+++|..|++ .|++|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~--~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQG--SGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence 3699999999999999999999 899999999875
No 131
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.12 E-value=2.3e-05 Score=79.07 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=32.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
..+||+||||||||+.||..+++ .|.+|+++|+..
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR--~G~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAAR--MGAKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHH--cCCcEEEEeccc
Confidence 35899999999999999999999 899999999873
No 132
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.11 E-value=3.3e-05 Score=74.81 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=36.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
.++||+|||||..|+++|..|.++.++.+|+|+||.+.++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a 41 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA 41 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccc
Confidence 4579999999999999999999976679999999998765
No 133
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.10 E-value=2e-05 Score=76.33 Aligned_cols=92 Identities=15% Similarity=0.114 Sum_probs=66.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++++|||+|+.|+.+|..|.+ .+.+|+++++.+.+. +.. ........+.+.+++.|++++.++.+..
T Consensus 140 ~~~~vvViGgG~~g~e~A~~L~~--~g~~Vtlv~~~~~~l--------~~~-~~~~~~~~l~~~l~~~gV~i~~~~~v~~ 208 (377)
T PRK04965 140 DAQRVLVVGGGLIGTELAMDLCR--AGKAVTLVDNAASLL--------ASL-MPPEVSSRLQHRLTEMGVHLLLKSQLQG 208 (377)
T ss_pred cCCeEEEECCCHHHHHHHHHHHh--cCCeEEEEecCCccc--------chh-CCHHHHHHHHHHHHhCCCEEEECCeEEE
Confidence 45789999999999999999999 899999999886542 111 1234555666777788999987765532
Q ss_pred --------Eeeecccc-cccCEEEEeeCCCCC
Q psy4525 92 --------DISLGDLT-NAYHAVVLTYGADND 114 (388)
Q Consensus 92 --------~~~~~~~~-~~yd~lvlAtG~~~~ 114 (388)
.+...+.. ..+|.||+|+|..+.
T Consensus 209 i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 209 LEKTDSGIRATLDSGRSIEVDAVIAAAGLRPN 240 (377)
T ss_pred EEccCCEEEEEEcCCcEEECCEEEECcCCCcc
Confidence 12233332 379999999998763
No 134
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.10 E-value=2.3e-05 Score=78.10 Aligned_cols=91 Identities=19% Similarity=0.223 Sum_probs=67.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..|++ .|.+|+++++.+.+. |. ...++...+.+.+++.+++++.++.+..
T Consensus 171 ~~~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l--------~~--~~~~~~~~l~~~l~~~gV~i~~~~~V~~ 238 (462)
T PRK06416 171 VPKSLVVIGGGYIGVEFASAYAS--LGAEVTIVEALPRIL--------PG--EDKEISKLAERALKKRGIKIKTGAKAKK 238 (462)
T ss_pred cCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCCcC--------Cc--CCHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 35799999999999999999999 899999999986642 32 2345566677778888999998866532
Q ss_pred E--------eeeccc----ccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLGDL----TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~~~----~~~yd~lvlAtG~~~~ 114 (388)
. +...+. ...+|.||+|+|..|.
T Consensus 239 i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~ 273 (462)
T PRK06416 239 VEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPN 273 (462)
T ss_pred EEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccC
Confidence 1 222221 2379999999998774
No 135
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.10 E-value=1.9e-05 Score=78.56 Aligned_cols=91 Identities=20% Similarity=0.194 Sum_probs=67.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|++|+.+|..|++ .+.+|+++++.+.+. |. ...++...+.+.+++.+++++.++.+..
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l--------~~--~~~~~~~~~~~~l~~~gi~i~~~~~v~~ 236 (461)
T TIGR01350 169 VPESLVIIGGGVIGIEFASIFAS--LGSKVTVIEMLDRIL--------PG--EDAEVSKVVAKALKKKGVKILTNTKVTA 236 (461)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCCCC--------CC--CCHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 35799999999999999999999 899999999987643 22 2234555666777788999998866531
Q ss_pred ------E--eeeccc---ccccCEEEEeeCCCCC
Q psy4525 92 ------D--ISLGDL---TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ------~--~~~~~~---~~~yd~lvlAtG~~~~ 114 (388)
. +...+. ...+|.||+|+|..|.
T Consensus 237 i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 237 VEKNDDQVVYENKGGETETLTGEKVLVAVGRKPN 270 (461)
T ss_pred EEEeCCEEEEEEeCCcEEEEEeCEEEEecCCccc
Confidence 1 222222 3479999999998774
No 136
>PLN02697 lycopene epsilon cyclase
Probab=98.10 E-value=2.9e-05 Score=77.92 Aligned_cols=100 Identities=15% Similarity=0.159 Sum_probs=62.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC---CCceee-----CCC--------------CC--------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP---FGLVRY-----GVA--------------PD-------- 61 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~---gg~~~~-----g~~--------------p~-------- 61 (388)
..+||+||||||||+++|..+++ .|++|+++|+.... +|.|.. ++. +.
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak--~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~ 184 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAK--LGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGR 184 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHh--CCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccC
Confidence 35899999999999999999999 89999999975322 233311 100 00
Q ss_pred -C--cchhHHHHHHHHhhcCCCcEEEceEEEEEE--------eeecc-cccccCEEEEeeCCCC
Q psy4525 62 -H--PEVKNVINTFTKTGDNPRVNFYGNICLGQD--------ISLGD-LTNAYHAVVLTYGADN 113 (388)
Q Consensus 62 -~--~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~--------~~~~~-~~~~yd~lvlAtG~~~ 113 (388)
+ .....+.+.+.+.+.+.|++++........ +...+ ....++.||.|+|..+
T Consensus 185 ~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 185 AYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred cccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 0 123345555666666678887433222111 11122 2347899999999866
No 137
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.08 E-value=1.9e-05 Score=77.06 Aligned_cols=92 Identities=17% Similarity=0.188 Sum_probs=66.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++++|||+|+.|+.+|..|++ .|.+|+++++.+.+.+. .....+...+.+.+++.|++++.++.+..
T Consensus 143 ~~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~~l~~---------~~~~~~~~~l~~~l~~~GV~i~~~~~V~~ 211 (396)
T PRK09754 143 PERSVVIVGAGTIGLELAASATQ--RRCKVTVIELAATVMGR---------NAPPPVQRYLLQRHQQAGVRILLNNAIEH 211 (396)
T ss_pred cCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCcchhh---------hcCHHHHHHHHHHHHHCCCEEEeCCeeEE
Confidence 35789999999999999999999 89999999988664311 11233455566667778999998766532
Q ss_pred E-------eeecccc-cccCEEEEeeCCCCC
Q psy4525 92 D-------ISLGDLT-NAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~-------~~~~~~~-~~yd~lvlAtG~~~~ 114 (388)
. +.+.+.+ ..+|.||+|+|..+.
T Consensus 212 i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 212 VVDGEKVELTLQSGETLQADVVIYGIGISAN 242 (396)
T ss_pred EEcCCEEEEEECCCCEEECCEEEECCCCChh
Confidence 1 2233332 379999999998774
No 138
>PRK11445 putative oxidoreductase; Provisional
Probab=98.08 E-value=1.6e-05 Score=76.16 Aligned_cols=33 Identities=30% Similarity=0.320 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
+||+||||||||+++|..|++ . ++|+++|+.+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~--~-~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAG--K-MKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhc--c-CCEEEEECCCc
Confidence 699999999999999999999 7 99999998763
No 139
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.08 E-value=2.1e-05 Score=77.71 Aligned_cols=90 Identities=8% Similarity=0.092 Sum_probs=67.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE-
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ- 91 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~- 91 (388)
+++++|||||+.|+.+|..|++ .|.+|+++++.+.+. +. ...++...+.+.+++.|++++.+..+..
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~--~g~~Vtli~~~~~l~--------~~--~d~~~~~~l~~~l~~~gI~i~~~~~v~~i 215 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYE--RGLHPTLIHRSDKIN--------KL--MDADMNQPILDELDKREIPYRLNEEIDAI 215 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCcEEEEecccccc--------hh--cCHHHHHHHHHHHHhcCCEEEECCeEEEE
Confidence 5799999999999999999999 899999999886542 11 2234566677778888999998776642
Q ss_pred ---Eeeeccc-ccccCEEEEeeCCCCC
Q psy4525 92 ---DISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ---~~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
.+...+. ...+|.|++|+|..+.
T Consensus 216 ~~~~v~~~~g~~~~~D~vl~a~G~~pn 242 (438)
T PRK13512 216 NGNEVTFKSGKVEHYDMIIEGVGTHPN 242 (438)
T ss_pred eCCEEEECCCCEEEeCEEEECcCCCcC
Confidence 2333332 2479999999998763
No 140
>PRK07236 hypothetical protein; Provisional
Probab=98.06 E-value=4e-05 Score=74.47 Aligned_cols=37 Identities=22% Similarity=0.509 Sum_probs=33.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
+..++|+|||||++|+++|..|++ .|++|+|+|+.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRR--AGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCC
Confidence 456899999999999999999999 8999999998763
No 141
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.06 E-value=2.7e-05 Score=75.63 Aligned_cols=36 Identities=22% Similarity=0.502 Sum_probs=32.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..++|+||||||+|+++|..|++ .|.+|+|||+.+.
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~--~G~~v~liE~~~~ 41 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALAR--AGASVALVAPEPP 41 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhc--CCCeEEEEeCCCC
Confidence 34799999999999999999999 8999999999754
No 142
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.05 E-value=2.8e-05 Score=77.04 Aligned_cols=91 Identities=15% Similarity=0.155 Sum_probs=67.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD 92 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 92 (388)
.++|+|||+|++|+.+|..+++ .|.+|+++++.+.+. |. ....++...+.+.+++.|++++.++.+...
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l--------~~-~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i 217 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKH--LGKNVRIIQLEDRIL--------PD-SFDKEITDVMEEELRENGVELHLNEFVKSL 217 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHh--cCCcEEEEeCCcccC--------ch-hcCHHHHHHHHHHHHHCCCEEEcCCEEEEE
Confidence 5799999999999999999998 899999999876532 11 123456667777888889999988766421
Q ss_pred --------eeecccccccCEEEEeeCCCCC
Q psy4525 93 --------ISLGDLTNAYHAVVLTYGADND 114 (388)
Q Consensus 93 --------~~~~~~~~~yd~lvlAtG~~~~ 114 (388)
+..++....+|.+|+|+|..+.
T Consensus 218 ~~~~~~~~v~~~~~~i~~d~vi~a~G~~p~ 247 (444)
T PRK09564 218 IGEDKVEGVVTDKGEYEADVVIVATGVKPN 247 (444)
T ss_pred ecCCcEEEEEeCCCEEEcCEEEECcCCCcC
Confidence 1222333479999999997763
No 143
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.04 E-value=1.6e-05 Score=76.09 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=25.3
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEE
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIY 44 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~li 44 (388)
||+|||||+||+.||..+++ .|.+|+|+
T Consensus 1 DViVVGgG~AG~eAA~aaAr--~G~~V~Li 28 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAAR--MGAKVLLI 28 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TT--EEEE
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCCEEEE
Confidence 69999999999999999999 99999999
No 144
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.04 E-value=3.1e-05 Score=76.36 Aligned_cols=92 Identities=14% Similarity=0.091 Sum_probs=66.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++|+|||+|++|+.+|..|++ .+.+|+++++.+.+.. +. ...++...+.+.+++.|++++.++.+..
T Consensus 136 ~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~~~-------~~--~~~~~~~~~~~~l~~~gV~v~~~~~v~~ 204 (427)
T TIGR03385 136 KVENVVIIGGGYIGIEMAEALRE--RGKNVTLIHRSERILN-------KL--FDEEMNQIVEEELKKHEINLRLNEEVDS 204 (427)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--CCCcEEEEECCcccCc-------cc--cCHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 35799999999999999999999 8999999998865410 11 1234556667777888999987766532
Q ss_pred E------eeeccc-ccccCEEEEeeCCCCC
Q psy4525 92 D------ISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~------~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
. +...+. ...+|.||+|+|..+.
T Consensus 205 i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 205 IEGEERVKVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred EecCCCEEEEcCCCEEEeCEEEECCCccCC
Confidence 1 122222 3479999999998763
No 145
>PRK07208 hypothetical protein; Provisional
Probab=98.02 E-value=7.9e-06 Score=81.77 Aligned_cols=43 Identities=40% Similarity=0.574 Sum_probs=39.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~ 55 (388)
+..++|+|||||++||+||..|.+ .|.+|+|+|+.+.+||.+.
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~--~g~~v~v~E~~~~~GG~~~ 44 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLK--RGYPVTVLEADPVVGGISR 44 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCceee
Confidence 345799999999999999999999 8999999999999999863
No 146
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.01 E-value=4.3e-05 Score=75.79 Aligned_cols=90 Identities=14% Similarity=0.069 Sum_probs=67.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD 92 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 92 (388)
+++++|||||+.|+.+|..|++ .|.+|+++++.+.+. +. ...++...+.+.+++.|++++.++.+...
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~il--------~~--~d~~~~~~~~~~l~~~gI~i~~~~~v~~i 233 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHG--LGSETHLVIRHERVL--------RS--FDSMISETITEEYEKEGINVHKLSKPVKV 233 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCC--------cc--cCHHHHHHHHHHHHHcCCEEEcCCEEEEE
Confidence 5799999999999999999999 899999999886642 22 23445666777788889999987655321
Q ss_pred ---------eeeccc--ccccCEEEEeeCCCCC
Q psy4525 93 ---------ISLGDL--TNAYHAVVLTYGADND 114 (388)
Q Consensus 93 ---------~~~~~~--~~~yd~lvlAtG~~~~ 114 (388)
+...+. ...+|.|++|+|..|+
T Consensus 234 ~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 234 EKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred EEeCCceEEEEECCCcEEEEcCEEEEeeCCCcC
Confidence 222223 2379999999998774
No 147
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.01 E-value=4.5e-05 Score=75.52 Aligned_cols=91 Identities=18% Similarity=0.207 Sum_probs=67.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..+.+ .+.+|+++++.+.+. |.. ..++...+.+.+++.|++++.++.+..
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l--------~~~--~~~~~~~l~~~l~~~gV~v~~~~~v~~ 224 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFAN--FGSKVTILEAASLFL--------PRE--DRDIADNIATILRDQGVDIILNAHVER 224 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCC--------CCc--CHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence 35799999999999999999999 899999999876542 322 344566677778888999998766532
Q ss_pred E--------eeecccccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLGDLTNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~~~~~~yd~lvlAtG~~~~ 114 (388)
. +..++.+..+|.|++|+|..|.
T Consensus 225 i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn 255 (441)
T PRK08010 225 ISHHENQVQVHSEHAQLAVDALLIASGRQPA 255 (441)
T ss_pred EEEcCCEEEEEEcCCeEEeCEEEEeecCCcC
Confidence 1 1222233479999999998774
No 148
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.01 E-value=7e-06 Score=82.12 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=38.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~ 55 (388)
+.+||||||||+.||+||..|++ .|++|+|+|+++.+||..+
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~--~G~~V~VlE~~~~~GG~a~ 43 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLAR--AGLKVTVLEKNDRVGGRAR 43 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHh--CCCEEEEEEecCCCCcceE
Confidence 35899999999999999999999 9999999999999999763
No 149
>PRK07190 hypothetical protein; Provisional
Probab=98.01 E-value=3.4e-05 Score=77.22 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=33.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
..++|+||||||+|+.+|..|++ .|.+|+|+|+.+.+
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar--~Gi~V~llEr~~~~ 40 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQL--CGLNTVIVDKSDGP 40 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHH--cCCCEEEEeCCCcc
Confidence 34799999999999999999999 89999999988653
No 150
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.01 E-value=4.3e-05 Score=75.76 Aligned_cols=91 Identities=11% Similarity=0.077 Sum_probs=67.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..+++ .+.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 165 ~~~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~l~~~gV~i~~~~~v~~ 232 (446)
T TIGR01424 165 LPKSILILGGGYIAVEFAGIWRG--LGVQVTLIYRGELIL--------RG--FDDDMRALLARNMEGRGIRIHPQTSLTS 232 (446)
T ss_pred cCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEeCCCCC--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 35789999999999999999998 899999999876542 22 2344556667777888999998765532
Q ss_pred E--------eeeccc-ccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
. +...+. ...+|.||+|+|..|+
T Consensus 233 i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn 264 (446)
T TIGR01424 233 ITKTDDGLKVTLSHGEEIVADVVLFATGRSPN 264 (446)
T ss_pred EEEcCCeEEEEEcCCcEeecCEEEEeeCCCcC
Confidence 1 222222 2479999999998763
No 151
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.00 E-value=1.3e-05 Score=71.46 Aligned_cols=39 Identities=31% Similarity=0.435 Sum_probs=36.6
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
.+|+|||+|+||++||..|+. .|.+|+||||+.-+||.+
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~--aG~~vtV~eKg~GvGGRl 40 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALRE--AGREVTVFEKGRGVGGRL 40 (331)
T ss_pred CcEEEEccchHHHHHHHHHHh--cCcEEEEEEcCCCcccch
Confidence 479999999999999999999 999999999998888876
No 152
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.00 E-value=4.4e-05 Score=76.01 Aligned_cols=91 Identities=12% Similarity=0.077 Sum_probs=67.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..+++ .|.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 174 ~~~~v~IiGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~l~~~gI~v~~~~~v~~ 241 (461)
T PRK05249 174 LPRSLIIYGAGVIGCEYASIFAA--LGVKVTLINTRDRLL--------SF--LDDEISDALSYHLRDSGVTIRHNEEVEK 241 (461)
T ss_pred cCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCcC--------Cc--CCHHHHHHHHHHHHHcCCEEEECCEEEE
Confidence 35899999999999999999999 899999999986642 21 2344566677777778999987766532
Q ss_pred E--------eeeccc-ccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
. +...+. ...+|.|++|+|..|.
T Consensus 242 i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 242 VEGGDDGVIVHLKSGKKIKADCLLYANGRTGN 273 (461)
T ss_pred EEEeCCeEEEEECCCCEEEeCEEEEeecCCcc
Confidence 1 222222 2479999999998774
No 153
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.00 E-value=4.3e-05 Score=76.15 Aligned_cols=90 Identities=13% Similarity=0.189 Sum_probs=66.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD 92 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 92 (388)
+++++|||+|++|+.+|..|++ .|.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+...
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~l~~~gV~i~~~~~V~~i 233 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFAR--LGSEVTILQRSDRLL--------PR--EEPEISAAVEEALAEEGIEVVTSAQVKAV 233 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCcCC--------Cc--cCHHHHHHHHHHHHHcCCEEEcCcEEEEE
Confidence 4799999999999999999999 899999999886642 22 23345566677777889999988755311
Q ss_pred --------eeec---c-cccccCEEEEeeCCCCC
Q psy4525 93 --------ISLG---D-LTNAYHAVVLTYGADND 114 (388)
Q Consensus 93 --------~~~~---~-~~~~yd~lvlAtG~~~~ 114 (388)
+... + ....+|.||+|+|..|.
T Consensus 234 ~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~ 267 (463)
T TIGR02053 234 SVRGGGKIITVEKPGGQGEVEADELLVATGRRPN 267 (463)
T ss_pred EEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcC
Confidence 1221 1 12379999999998774
No 154
>PRK06370 mercuric reductase; Validated
Probab=97.98 E-value=4.3e-05 Score=76.18 Aligned_cols=91 Identities=19% Similarity=0.207 Sum_probs=67.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++|+|||+|+.|+.+|..+++ .|.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 170 ~~~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~~~l--------~~--~~~~~~~~l~~~l~~~GV~i~~~~~V~~ 237 (463)
T PRK06370 170 LPEHLVIIGGGYIGLEFAQMFRR--FGSEVTVIERGPRLL--------PR--EDEDVAAAVREILEREGIDVRLNAECIR 237 (463)
T ss_pred cCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCCCC--------cc--cCHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence 35899999999999999999999 899999999986653 22 2334556667777888999998765531
Q ss_pred E--------eeec--c--cccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLG--D--LTNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~--~--~~~~yd~lvlAtG~~~~ 114 (388)
. +... + ....+|.||+|+|..|.
T Consensus 238 i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn 272 (463)
T PRK06370 238 VERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPN 272 (463)
T ss_pred EEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcC
Confidence 1 1111 1 12379999999998774
No 155
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=97.98 E-value=4.7e-05 Score=74.20 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=32.6
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
+||+|||||.+|+++|..|+++.+|.+|+|+|+.+.+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~ 39 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGP 39 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcc
Confidence 6999999999999999999994349999999998543
No 156
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.98 E-value=4.2e-05 Score=64.35 Aligned_cols=33 Identities=24% Similarity=0.699 Sum_probs=28.6
Q ss_pred EEECccHHHHHHHHHHHhhC---CCCcEEEEcCCCC
Q psy4525 17 CIVGSGPAGFYCAQQILKLL---PQSTVDIYEKLPV 49 (388)
Q Consensus 17 vIIGaG~aGl~aA~~l~~~~---~g~~v~lie~~~~ 49 (388)
+|||+||+|++++..|.+.. ...+|+|||+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 59999999999999999963 4679999999654
No 157
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.97 E-value=8.9e-06 Score=80.63 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=36.8
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCC--CcEEEEcCCCCCCCcee
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQ--STVDIYEKLPVPFGLVR 55 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g--~~v~lie~~~~~gg~~~ 55 (388)
++|+|||||+|||+||..|++ .| .+|+|+|+.+.+||.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~--~G~~~~V~vlEa~~~~GGr~~ 42 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHK--KGPDADITLLEASDRLGGKIQ 42 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHH--hCCCCCEEEEEcCCCCcceEE
Confidence 479999999999999999999 67 89999999999999873
No 158
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.96 E-value=6.6e-05 Score=74.80 Aligned_cols=34 Identities=32% Similarity=0.255 Sum_probs=31.6
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
+||+|||+|.||++||..+++ .|.+|+|+|+.+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae--~G~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAK--KGFDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHH--CCCeEEEEeCCCC
Confidence 699999999999999999999 8999999999753
No 159
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.96 E-value=5.1e-05 Score=73.45 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=30.4
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
.+|+||||||+|+++|..|++ .|++|+|+|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~--~G~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQ--KGIKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHc--CCCeEEEecCC
Confidence 589999999999999999999 89999999976
No 160
>PLN02507 glutathione reductase
Probab=97.96 E-value=5.7e-05 Score=75.85 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=67.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD 92 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 92 (388)
+++|+|||+|+.|+.+|..+++ .|.+|+++++.+.+. +. ...++...+.+.+++.|++++.++.+...
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~l~~~GI~i~~~~~V~~i 270 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRG--MGATVDLFFRKELPL--------RG--FDDEMRAVVARNLEGRGINLHPRTNLTQL 270 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEecCCcC--------cc--cCHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 5799999999999999999999 899999999876532 21 23456666777778889999988665321
Q ss_pred --------eeeccc-ccccCEEEEeeCCCCC
Q psy4525 93 --------ISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 93 --------~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
+...+. ...+|.|++|+|..|.
T Consensus 271 ~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn 301 (499)
T PLN02507 271 TKTEGGIKVITDHGEEFVADVVLFATGRAPN 301 (499)
T ss_pred EEeCCeEEEEECCCcEEEcCEEEEeecCCCC
Confidence 222222 2479999999998774
No 161
>PRK06116 glutathione reductase; Validated
Probab=97.96 E-value=5.9e-05 Score=74.87 Aligned_cols=91 Identities=15% Similarity=0.193 Sum_probs=67.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++|+|||+|+.|+.+|..|.+ .+.+|+++++.+.+. +. ...++...+.+.+++.|++++.++.+..
T Consensus 166 ~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~L~~~GV~i~~~~~V~~ 233 (450)
T PRK06116 166 LPKRVAVVGAGYIAVEFAGVLNG--LGSETHLFVRGDAPL--------RG--FDPDIRETLVEEMEKKGIRLHTNAVPKA 233 (450)
T ss_pred cCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCc--------cc--cCHHHHHHHHHHHHHCCcEEECCCEEEE
Confidence 35799999999999999999999 899999999876532 21 2345666677778888999998776532
Q ss_pred E---------eeeccc-ccccCEEEEeeCCCCC
Q psy4525 92 D---------ISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~---------~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
. +...+. ...+|.||+|+|..|.
T Consensus 234 i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~ 266 (450)
T PRK06116 234 VEKNADGSLTLTLEDGETLTVDCLIWAIGREPN 266 (450)
T ss_pred EEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcC
Confidence 1 122222 2379999999997763
No 162
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.96 E-value=5.3e-05 Score=75.71 Aligned_cols=91 Identities=15% Similarity=0.251 Sum_probs=66.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++|+|||+|+.|+.+|..+++ .+.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 182 ~~~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l--------~~--~d~~~~~~~~~~l~~~gi~i~~~~~v~~ 249 (475)
T PRK06327 182 VPKKLAVIGAGVIGLELGSVWRR--LGAEVTILEALPAFL--------AA--ADEQVAKEAAKAFTKQGLDIHLGVKIGE 249 (475)
T ss_pred cCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCCccC--------Cc--CCHHHHHHHHHHHHHcCcEEEeCcEEEE
Confidence 35799999999999999999999 899999999986542 21 1244556666677778999988765531
Q ss_pred --------Eeeecc-----cccccCEEEEeeCCCCC
Q psy4525 92 --------DISLGD-----LTNAYHAVVLTYGADND 114 (388)
Q Consensus 92 --------~~~~~~-----~~~~yd~lvlAtG~~~~ 114 (388)
.+...+ ....+|.|++|+|..|.
T Consensus 250 i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 250 IKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPN 285 (475)
T ss_pred EEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccC
Confidence 122111 12379999999998774
No 163
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.95 E-value=5.3e-05 Score=75.57 Aligned_cols=91 Identities=19% Similarity=0.188 Sum_probs=67.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..+++ .|.+|+++++.+.+. |.. ..++...+.+.+++.|++++.++.+..
T Consensus 171 ~~~~vvVIGgG~ig~E~A~~l~~--~G~~Vtlv~~~~~~l--------~~~--d~~~~~~l~~~l~~~gV~i~~~~~v~~ 238 (466)
T PRK07818 171 LPKSIVIAGAGAIGMEFAYVLKN--YGVDVTIVEFLDRAL--------PNE--DAEVSKEIAKQYKKLGVKILTGTKVES 238 (466)
T ss_pred CCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCcC--------Ccc--CHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence 35799999999999999999999 899999999876542 322 344566677778888999998876532
Q ss_pred E--------eeec--cc---ccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLG--DL---TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~--~~---~~~yd~lvlAtG~~~~ 114 (388)
. +... +. ...+|.||+|+|..|+
T Consensus 239 i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 239 IDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPR 274 (466)
T ss_pred EEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccC
Confidence 1 1221 22 2379999999997764
No 164
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.95 E-value=1.9e-05 Score=83.36 Aligned_cols=36 Identities=31% Similarity=0.490 Sum_probs=31.8
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
.+|+||||||||+++|..|++..+|++|+|+|+.+.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 379999999999999999999434899999999875
No 165
>PRK14694 putative mercuric reductase; Provisional
Probab=97.95 E-value=6.7e-05 Score=74.84 Aligned_cols=89 Identities=11% Similarity=0.092 Sum_probs=65.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD 92 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 92 (388)
+++++|||+|+.|+.+|..|++ .+.+|+++++...+ |. ...++...+.+.+++.|++++.++.+...
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~--~g~~Vtlv~~~~~l---------~~--~~~~~~~~l~~~l~~~GI~v~~~~~v~~i 244 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFAR--LGSRVTVLARSRVL---------SQ--EDPAVGEAIEAAFRREGIEVLKQTQASEV 244 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEECCCCC---------CC--CCHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 5799999999999999999999 89999999864221 21 23446667777788889999987665321
Q ss_pred --------eeecccccccCEEEEeeCCCCC
Q psy4525 93 --------ISLGDLTNAYHAVVLTYGADND 114 (388)
Q Consensus 93 --------~~~~~~~~~yd~lvlAtG~~~~ 114 (388)
+...+....+|.||+|+|..|.
T Consensus 245 ~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn 274 (468)
T PRK14694 245 DYNGREFILETNAGTLRAEQLLVATGRTPN 274 (468)
T ss_pred EEcCCEEEEEECCCEEEeCEEEEccCCCCC
Confidence 1222233579999999998774
No 166
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.94 E-value=1.3e-05 Score=77.96 Aligned_cols=42 Identities=31% Similarity=0.445 Sum_probs=38.3
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~ 55 (388)
++|+|||||.|||+||.+|++..+..+++|||+++..||.+.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~ 42 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLR 42 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEE
Confidence 479999999999999999999655599999999999999984
No 167
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.93 E-value=3.8e-05 Score=73.78 Aligned_cols=91 Identities=20% Similarity=0.210 Sum_probs=71.1
Q ss_pred CcEEEECccHHHHHHHHHHHhhCC-----------CCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcE
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLP-----------QSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVN 82 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~-----------g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~ 82 (388)
.+|+||||||.|+.+|-.|+.+.. ..+|+|+|+.+.+. |.+ .+++..+..+.+++.||+
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL--------p~~--~~~l~~~a~~~L~~~GV~ 225 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL--------PMF--PPKLSKYAERALEKLGVE 225 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc--------cCC--CHHHHHHHHHHHHHCCCE
Confidence 479999999999999999887521 24899999997753 443 455777888889999999
Q ss_pred EEceEEEEE----Eeeecccc--cccCEEEEeeCCCCC
Q psy4525 83 FYGNICLGQ----DISLGDLT--NAYHAVVLTYGADND 114 (388)
Q Consensus 83 ~~~~~~v~~----~~~~~~~~--~~yd~lvlAtG~~~~ 114 (388)
++.++.|.. .++.++.. ..++.+|.|+|..++
T Consensus 226 v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~ 263 (405)
T COG1252 226 VLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRAS 263 (405)
T ss_pred EEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcCC
Confidence 999988753 25555544 589999999998774
No 168
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.92 E-value=7e-05 Score=76.10 Aligned_cols=38 Identities=29% Similarity=0.424 Sum_probs=34.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
...++|+||||||+|+++|..|++ .|++|+|+|+.+.+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~--~G~~v~v~Er~~~~ 45 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQ--YGVRVLVLERWPTL 45 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCC
Confidence 456899999999999999999999 89999999998653
No 169
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.92 E-value=7.8e-05 Score=74.32 Aligned_cols=90 Identities=14% Similarity=0.124 Sum_probs=66.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD 92 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 92 (388)
+++++|||+|+.|+.+|..|++ .+.+|+++++.+.+. |. ...+....+.+.+++.|++++.++.+...
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~--~g~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~L~~~gV~i~~~~~v~~v 244 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTE--LGVKVTLVSSRDRVL--------PG--EDADAAEVLEEVFARRGMTVLKRSRAESV 244 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCcCC--------CC--CCHHHHHHHHHHHHHCCcEEEcCCEEEEE
Confidence 4789999999999999999999 899999999876542 22 13345566777788889999977654221
Q ss_pred --------eeeccc-ccccCEEEEeeCCCCC
Q psy4525 93 --------ISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 93 --------~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
+...+. ...+|.|++|+|..|+
T Consensus 245 ~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn 275 (466)
T PRK07845 245 ERTGDGVVVTLTDGRTVEGSHALMAVGSVPN 275 (466)
T ss_pred EEeCCEEEEEECCCcEEEecEEEEeecCCcC
Confidence 222222 2379999999998774
No 170
>KOG2415|consensus
Probab=97.90 E-value=2.1e-05 Score=74.06 Aligned_cols=43 Identities=33% Similarity=0.389 Sum_probs=37.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhC----CCCcEEEEcCCCCCCCce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLL----PQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~----~g~~v~lie~~~~~gg~~ 54 (388)
...||+|||||||||+||++|++.. ..++|.++|+...+||..
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gght 121 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHT 121 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCce
Confidence 4579999999999999999999863 457899999999888754
No 171
>PRK07846 mycothione reductase; Reviewed
Probab=97.90 E-value=0.0001 Score=73.16 Aligned_cols=90 Identities=16% Similarity=0.115 Sum_probs=62.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..+++ .|.+|+++++.+.+. |. ...++...+.+.+ +.+++++.++.+..
T Consensus 165 ~~~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~~~ll--------~~--~d~~~~~~l~~l~-~~~v~i~~~~~v~~ 231 (451)
T PRK07846 165 LPESLVIVGGGFIAAEFAHVFSA--LGVRVTVVNRSGRLL--------RH--LDDDISERFTELA-SKRWDVRLGRNVVG 231 (451)
T ss_pred cCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCccc--------cc--cCHHHHHHHHHHH-hcCeEEEeCCEEEE
Confidence 35799999999999999999999 899999999986542 21 1233444444433 35688887765532
Q ss_pred --------Eeeeccc-ccccCEEEEeeCCCCC
Q psy4525 92 --------DISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 --------~~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
.+...+. ...+|.|++|+|..|.
T Consensus 232 i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn 263 (451)
T PRK07846 232 VSQDGSGVTLRLDDGSTVEADVLLVATGRVPN 263 (451)
T ss_pred EEEcCCEEEEEECCCcEeecCEEEEEECCccC
Confidence 1222222 2379999999998774
No 172
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.89 E-value=1.5e-05 Score=79.31 Aligned_cols=43 Identities=26% Similarity=0.369 Sum_probs=37.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCC--CCcEEEEcCCCCCCCcee
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLP--QSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~--g~~v~lie~~~~~gg~~~ 55 (388)
+++|+|||||+|||+||..|.+..+ |.+|+|+|+.+.+||.+.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~ 46 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQ 46 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEE
Confidence 3689999999999999999999222 899999999999999873
No 173
>PLN02576 protoporphyrinogen oxidase
Probab=97.89 E-value=1.7e-05 Score=79.71 Aligned_cols=43 Identities=21% Similarity=0.225 Sum_probs=39.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCC-CCcEEEEcCCCCCCCcee
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLP-QSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~-g~~v~lie~~~~~gg~~~ 55 (388)
...++|+|||||++||+||..|.+ . |.+|+|+|+.+.+||.+.
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~--~~g~~v~vlEa~~rvGGr~~ 53 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALAS--KHGVNVLVTEARDRVGGNIT 53 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHH--hcCCCEEEEecCCCCCCcee
Confidence 345799999999999999999999 7 899999999999999863
No 174
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.88 E-value=8.5e-05 Score=74.04 Aligned_cols=91 Identities=15% Similarity=0.158 Sum_probs=66.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++|+|||+|+.|+.+|..+.+ .|.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~--~G~~Vtlie~~~~il--------~~--~d~~~~~~l~~~l~~~gV~i~~~~~V~~ 240 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRR--LGAQVTVVEYLDRIC--------PG--TDTETAKTLQKALTKQGMKFKLGSKVTG 240 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCCCCC--------CC--CCHHHHHHHHHHHHhcCCEEEECcEEEE
Confidence 46899999999999999999999 899999999876642 32 2234556666777788999998765521
Q ss_pred E--------eeec---c---cccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLG---D---LTNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~---~---~~~~yd~lvlAtG~~~~ 114 (388)
. +... + ....+|.|++|+|..|.
T Consensus 241 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn 277 (466)
T PRK06115 241 ATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPY 277 (466)
T ss_pred EEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccc
Confidence 1 1111 1 12378999999998764
No 175
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.87 E-value=9e-05 Score=71.70 Aligned_cols=36 Identities=36% Similarity=0.616 Sum_probs=30.8
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
||+||||||||+++|..|.+...+.+|+|+|+.+..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 799999999999999999332289999999987654
No 176
>PRK13748 putative mercuric reductase; Provisional
Probab=97.87 E-value=8.2e-05 Score=76.00 Aligned_cols=89 Identities=13% Similarity=0.109 Sum_probs=66.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD 92 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 92 (388)
+++++|||+|+.|+.+|..|.+ .|.+|+++++...+ +. ...++...+.+.+++.|++++.++.+...
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~--~g~~Vtli~~~~~l---------~~--~d~~~~~~l~~~l~~~gI~i~~~~~v~~i 336 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFAR--LGSKVTILARSTLF---------FR--EDPAIGEAVTAAFRAEGIEVLEHTQASQV 336 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCEEEEEecCccc---------cc--cCHHHHHHHHHHHHHCCCEEEcCCEEEEE
Confidence 5799999999999999999999 89999999975321 21 23456666777788889999987765321
Q ss_pred --------eeecccccccCEEEEeeCCCCC
Q psy4525 93 --------ISLGDLTNAYHAVVLTYGADND 114 (388)
Q Consensus 93 --------~~~~~~~~~yd~lvlAtG~~~~ 114 (388)
+...+....+|.|++|+|..|+
T Consensus 337 ~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn 366 (561)
T PRK13748 337 AHVDGEFVLTTGHGELRADKLLVATGRAPN 366 (561)
T ss_pred EecCCEEEEEecCCeEEeCEEEEccCCCcC
Confidence 2222233478999999998774
No 177
>KOG1335|consensus
Probab=97.87 E-value=5.6e-05 Score=70.55 Aligned_cols=99 Identities=14% Similarity=0.166 Sum_probs=75.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
-+++++|||+|..||..+.-..+ .|.+||++|-.+.+++. ...++.+.+++.+.+.++.|++++.+..
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~r--LGseVT~VEf~~~i~~~----------mD~Eisk~~qr~L~kQgikF~l~tkv~~ 277 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSR--LGSEVTVVEFLDQIGGV----------MDGEISKAFQRVLQKQGIKFKLGTKVTS 277 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHh--cCCeEEEEEehhhhccc----------cCHHHHHHHHHHHHhcCceeEeccEEEE
Confidence 46899999999999999999999 89999999998887743 2345777888888889999999988742
Q ss_pred E---------eeeccc------ccccCEEEEeeCCCCCCCCCCCCCCCCC
Q psy4525 92 D---------ISLGDL------TNAYHAVVLTYGADNDKKLNIPGEDGKN 126 (388)
Q Consensus 92 ~---------~~~~~~------~~~yd~lvlAtG~~~~~~~~i~g~~~~~ 126 (388)
. +++.+. ....|.+++|+|.+| -..|+.++.
T Consensus 278 a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP----~t~GLgle~ 323 (506)
T KOG1335|consen 278 ATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRP----FTEGLGLEK 323 (506)
T ss_pred eeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcc----cccCCChhh
Confidence 1 222211 126899999999655 345554433
No 178
>PLN02268 probable polyamine oxidase
Probab=97.87 E-value=1.7e-05 Score=78.30 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=37.5
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~ 55 (388)
++|+|||||.|||+||..|.+ .|++|+|+|+.+.+||.+.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~--~g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHD--ASFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCCceee
Confidence 479999999999999999999 8999999999999999874
No 179
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=1.7e-05 Score=77.26 Aligned_cols=41 Identities=29% Similarity=0.321 Sum_probs=38.3
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY 56 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~ 56 (388)
++|+|+|||.|||+||..|.+ .|++|||+|+.+.+||.+..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~--~g~~vt~~ea~~~~GGk~~s 41 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELAD--AGYDVTLYEARDRLGGKVAS 41 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHh--CCCceEEEeccCccCceeee
Confidence 589999999999999999999 99999999999999998743
No 180
>PRK14727 putative mercuric reductase; Provisional
Probab=97.86 E-value=0.00011 Score=73.59 Aligned_cols=89 Identities=15% Similarity=0.115 Sum_probs=65.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD 92 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 92 (388)
+++++|||+|+.|+.+|..+.+ .|.+|+++++...+ +. ...++...+.+.+++.|++++.++.+...
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~--~G~~Vtlv~~~~~l---------~~--~d~~~~~~l~~~L~~~GV~i~~~~~V~~i 254 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYAR--LGSRVTILARSTLL---------FR--EDPLLGETLTACFEKEGIEVLNNTQASLV 254 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCEEEEEEcCCCC---------Cc--chHHHHHHHHHHHHhCCCEEEcCcEEEEE
Confidence 5799999999999999999999 89999999875211 21 23446667777788889999987665321
Q ss_pred --------eeecccccccCEEEEeeCCCCC
Q psy4525 93 --------ISLGDLTNAYHAVVLTYGADND 114 (388)
Q Consensus 93 --------~~~~~~~~~yd~lvlAtG~~~~ 114 (388)
+...+.+..+|.||+|+|..|.
T Consensus 255 ~~~~~~~~v~~~~g~i~aD~VlvA~G~~pn 284 (479)
T PRK14727 255 EHDDNGFVLTTGHGELRAEKLLISTGRHAN 284 (479)
T ss_pred EEeCCEEEEEEcCCeEEeCEEEEccCCCCC
Confidence 2222333478999999998774
No 181
>PRK07233 hypothetical protein; Provisional
Probab=97.86 E-value=1.7e-05 Score=78.05 Aligned_cols=38 Identities=32% Similarity=0.428 Sum_probs=36.4
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
+|+|||||++||+||..|.+ .|++|+|+|+.+.+||.+
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~--~G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAK--RGHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCcEEEEEeCCCCCCce
Confidence 68999999999999999999 899999999999999976
No 182
>KOG3851|consensus
Probab=97.85 E-value=0.00015 Score=66.23 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=34.0
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
+...+|+|||||.+|+..|..+.++...-+|.|+|....
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 456899999999999999999999876778999997654
No 183
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.84 E-value=9.9e-05 Score=72.68 Aligned_cols=91 Identities=15% Similarity=0.172 Sum_probs=67.3
Q ss_pred CcEEEECccHHHHHHHHHHHhhC------------CCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCc
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLL------------PQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRV 81 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~------------~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i 81 (388)
++++|||||++|+.+|..|.... ++.+|+++++.+.+. |. ....+.+...+.+++.|+
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll--------~~--~~~~~~~~~~~~L~~~gV 243 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL--------GS--FDQALRKYGQRRLRRLGV 243 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc--------cc--CCHHHHHHHHHHHHHCCC
Confidence 48999999999999999887531 368899999886542 22 234566777788888999
Q ss_pred EEEceEEEEE----Eeeecccc-cccCEEEEeeCCCCC
Q psy4525 82 NFYGNICLGQ----DISLGDLT-NAYHAVVLTYGADND 114 (388)
Q Consensus 82 ~~~~~~~v~~----~~~~~~~~-~~yd~lvlAtG~~~~ 114 (388)
+++.++.+.. .+.+.+++ ..+|.+|+|+|..++
T Consensus 244 ~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~ 281 (424)
T PTZ00318 244 DIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPG 281 (424)
T ss_pred EEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCc
Confidence 9998876642 24444443 389999999997663
No 184
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.84 E-value=0.00012 Score=73.18 Aligned_cols=93 Identities=14% Similarity=0.039 Sum_probs=66.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhC-CCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLL-PQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~-~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
.+++++|||||+.|+.+|..+.... .|.+|+|+++.+.+. |. ...++...+.+.+++.|++++.++.+.
T Consensus 186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il--------~~--~d~~~~~~l~~~L~~~GI~i~~~~~v~ 255 (486)
T TIGR01423 186 PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL--------RG--FDSTLRKELTKQLRANGINIMTNENPA 255 (486)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc--------cc--cCHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence 3579999999999999998776521 489999999886642 22 234566677777888899999877543
Q ss_pred EE---------eeeccc-ccccCEEEEeeCCCCC
Q psy4525 91 QD---------ISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 91 ~~---------~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
.. +...+. ...+|.|++|+|..|+
T Consensus 256 ~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 256 KVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPR 289 (486)
T ss_pred EEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcC
Confidence 21 222222 2479999999997764
No 185
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.82 E-value=9.4e-05 Score=72.11 Aligned_cols=91 Identities=18% Similarity=0.151 Sum_probs=69.3
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE-E
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG-Q 91 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~-~ 91 (388)
.++++|||+|++|+.+|..+++ .|.+|+++|+.+.+++.... .++.+.+.+.++..+++++.+..+. .
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~--~G~~v~l~e~~~~~~~~~~~---------~~~~~~~~~~l~~~gi~~~~~~~~~~i 204 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAK--RGKKVTLIEAADRLGGQLLD---------PEVAEELAELLEKYGVELLLGTKVVGV 204 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEcccccchhhhh---------HHHHHHHHHHHHHCCcEEEeCCceEEE
Confidence 4799999999999999999999 89999999999887644211 5567777888888889887766642 1
Q ss_pred E----------eeeccc-ccccCEEEEeeCCCCC
Q psy4525 92 D----------ISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~----------~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
+ ...... ...+|.+++++|..++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 205 EGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred EcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 1 122222 2379999999998873
No 186
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.81 E-value=9.6e-05 Score=78.45 Aligned_cols=92 Identities=12% Similarity=0.067 Sum_probs=67.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++++|||||+.|+.+|..|++ .|.+|+|+++.+.+. | .....+....+.+.+++.|++++.+..+..
T Consensus 144 ~~k~vvVIGgG~iGlE~A~~L~~--~G~~VtvVe~~~~ll--------~-~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~ 212 (847)
T PRK14989 144 RSKRGAVVGGGLLGLEAAGALKN--LGVETHVIEFAPMLM--------A-EQLDQMGGEQLRRKIESMGVRVHTSKNTLE 212 (847)
T ss_pred cCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEeccccch--------h-hhcCHHHHHHHHHHHHHCCCEEEcCCeEEE
Confidence 45789999999999999999999 899999999876531 2 112344556677778888999998866532
Q ss_pred E----------eeecccc-cccCEEEEeeCCCCC
Q psy4525 92 D----------ISLGDLT-NAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~----------~~~~~~~-~~yd~lvlAtG~~~~ 114 (388)
. +...+.+ ..+|.||+|+|..|.
T Consensus 213 I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn 246 (847)
T PRK14989 213 IVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQ 246 (847)
T ss_pred EEecCCCceEEEEECCCCEEEcCEEEECCCcccC
Confidence 1 2222232 379999999998874
No 187
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.80 E-value=0.00017 Score=71.55 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=61.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD 92 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 92 (388)
+++++|||+|+.|+.+|..|.+ .|.+|+++++.+.+. |. ...++...+.+..+ .+++++.+..+...
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~~~ll--------~~--~d~~~~~~l~~~~~-~gI~i~~~~~V~~i 235 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSA--LGTRVTIVNRSTKLL--------RH--LDEDISDRFTEIAK-KKWDIRLGRNVTAV 235 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHh--CCCcEEEEEccCccc--------cc--cCHHHHHHHHHHHh-cCCEEEeCCEEEEE
Confidence 5799999999999999999999 899999999886542 21 12334444444443 47888877654321
Q ss_pred --------eeeccc-ccccCEEEEeeCCCCC
Q psy4525 93 --------ISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 93 --------~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
+...+. ...+|.|++|+|..|.
T Consensus 236 ~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 236 EQDGDGVTLTLDDGSTVTADVLLVATGRVPN 266 (452)
T ss_pred EEcCCeEEEEEcCCCEEEcCEEEEeeccCcC
Confidence 222222 2479999999998774
No 188
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.80 E-value=7.3e-05 Score=69.67 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=32.2
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCV 327 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~ 327 (388)
+.++++++ ..++.+..++ .. ..+. +.++.++.+|.||+|+|..|+..
T Consensus 69 ~~gv~~~~-~~v~~v~~~~-~~-~~v~--------~~~~~~~~~d~liiAtG~~~~~~ 115 (300)
T TIGR01292 69 KFGAEIIY-EEVIKVDLSD-RP-FKVK--------TGDGKEYTAKAVIIATGASARKL 115 (300)
T ss_pred HcCCeEEE-EEEEEEEecC-Ce-eEEE--------eCCCCEEEeCEEEECCCCCcccC
Confidence 45788888 7788887542 21 1222 23446899999999999988753
No 189
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.79 E-value=0.0001 Score=77.95 Aligned_cols=92 Identities=12% Similarity=0.113 Sum_probs=66.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++++|||||+.|+.+|..|++ .|.+|+++++.+.+. +. .........+.+.+++.|++++.++.+..
T Consensus 139 ~~k~vvVVGgG~~GlE~A~~L~~--~G~~Vtvv~~~~~ll--------~~-~ld~~~~~~l~~~l~~~GV~v~~~~~v~~ 207 (785)
T TIGR02374 139 RFKKAAVIGGGLLGLEAAVGLQN--LGMDVSVIHHAPGLM--------AK-QLDQTAGRLLQRELEQKGLTFLLEKDTVE 207 (785)
T ss_pred cCCeEEEECCCHHHHHHHHHHHh--cCCeEEEEccCCchh--------hh-hcCHHHHHHHHHHHHHcCCEEEeCCceEE
Confidence 45789999999999999999999 899999999875531 11 12234455566677888999998765422
Q ss_pred --------Eeeecccc-cccCEEEEeeCCCCC
Q psy4525 92 --------DISLGDLT-NAYHAVVLTYGADND 114 (388)
Q Consensus 92 --------~~~~~~~~-~~yd~lvlAtG~~~~ 114 (388)
.+...+.+ ..+|.||+|+|..|.
T Consensus 208 i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn 239 (785)
T TIGR02374 208 IVGATKADRIRFKDGSSLEADLIVMAAGIRPN 239 (785)
T ss_pred EEcCCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence 12333333 379999999998774
No 190
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.78 E-value=2.2e-05 Score=74.79 Aligned_cols=35 Identities=40% Similarity=0.639 Sum_probs=30.5
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
++|+||||||+|+++|..|++ .|++|+|||+.+.+
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~--~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALAR--AGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHH--TTCEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHh--cccccccchhcccc
Confidence 589999999999999999999 89999999998653
No 191
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.78 E-value=0.00016 Score=72.32 Aligned_cols=90 Identities=16% Similarity=0.209 Sum_probs=64.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||||+.|+.+|..+++ .|.+|+++++. .+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 179 ~~~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~-~~l--------~~--~d~~~~~~l~~~L~~~gV~i~~~~~v~~ 245 (484)
T TIGR01438 179 CPGKTLVVGASYVALECAGFLAG--IGLDVTVMVRS-ILL--------RG--FDQDCANKVGEHMEEHGVKFKRQFVPIK 245 (484)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH--hCCcEEEEEec-ccc--------cc--cCHHHHHHHHHHHHHcCCEEEeCceEEE
Confidence 34689999999999999999999 89999999864 321 22 2345666677778888999987764321
Q ss_pred --------Eeeeccc----ccccCEEEEeeCCCCC
Q psy4525 92 --------DISLGDL----TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 --------~~~~~~~----~~~yd~lvlAtG~~~~ 114 (388)
.++..+. +..+|.|++|+|..|.
T Consensus 246 v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn 280 (484)
T TIGR01438 246 VEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDAC 280 (484)
T ss_pred EEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcC
Confidence 1222222 3479999999997763
No 192
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.78 E-value=3.2e-05 Score=75.89 Aligned_cols=38 Identities=26% Similarity=0.396 Sum_probs=34.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
...++|+||||||||+++|..|++ .|++|+|+|+.+.+
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKD--SGLRIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhc--CCCEEEEEecCCcc
Confidence 346899999999999999999999 89999999987653
No 193
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.78 E-value=3e-05 Score=77.93 Aligned_cols=39 Identities=28% Similarity=0.421 Sum_probs=37.3
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
+||+|||||++||+||..|++ .|++|+|+|+++.+||..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~--~G~~v~vlE~~~~~GG~~ 40 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAK--RGYRVTLLEQHAQPGGCA 40 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCCcc
Confidence 689999999999999999999 899999999999999876
No 194
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.77 E-value=0.00018 Score=71.79 Aligned_cols=90 Identities=19% Similarity=0.294 Sum_probs=63.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..+.+ .|.+|+++++.+.+. |. ...++...+.+.+++. ++++.++.+..
T Consensus 173 ~~~~vvIiGgG~iG~E~A~~l~~--~G~~Vtlv~~~~~il--------~~--~d~~~~~~~~~~l~~~-v~i~~~~~v~~ 239 (471)
T PRK06467 173 VPKRLLVMGGGIIGLEMGTVYHR--LGSEVDVVEMFDQVI--------PA--ADKDIVKVFTKRIKKQ-FNIMLETKVTA 239 (471)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCCEEEEecCCCCC--------Cc--CCHHHHHHHHHHHhhc-eEEEcCCEEEE
Confidence 35799999999999999999999 899999999887642 32 2334555566666655 77777765431
Q ss_pred --------Eeeecc--c---ccccCEEEEeeCCCCC
Q psy4525 92 --------DISLGD--L---TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 --------~~~~~~--~---~~~yd~lvlAtG~~~~ 114 (388)
.+...+ . +..+|.||+|+|..|+
T Consensus 240 i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn 275 (471)
T PRK06467 240 VEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPN 275 (471)
T ss_pred EEEcCCEEEEEEEeCCCcceEEEeCEEEEeeccccc
Confidence 122111 1 2479999999998774
No 195
>PTZ00058 glutathione reductase; Provisional
Probab=97.77 E-value=0.00015 Score=73.55 Aligned_cols=89 Identities=13% Similarity=0.153 Sum_probs=65.5
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD 92 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 92 (388)
+++|+|||+|+.|+.+|..+.+ .|.+|+++++.+.+. |. ...++...+.+.+++.|++++.+..+...
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~--~G~~Vtli~~~~~il--------~~--~d~~i~~~l~~~L~~~GV~i~~~~~V~~I 304 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNR--LGAESYIFARGNRLL--------RK--FDETIINELENDMKKNNINIITHANVEEI 304 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--cCCcEEEEEeccccc--------cc--CCHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 6899999999999999999999 899999999886532 22 23445566677778889999877765321
Q ss_pred -------e--eecc-c-ccccCEEEEeeCCCC
Q psy4525 93 -------I--SLGD-L-TNAYHAVVLTYGADN 113 (388)
Q Consensus 93 -------~--~~~~-~-~~~yd~lvlAtG~~~ 113 (388)
+ ...+ . ...+|.|++|+|..|
T Consensus 305 ~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~P 336 (561)
T PTZ00058 305 EKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSP 336 (561)
T ss_pred EecCCCcEEEEECCCCEEEECCEEEECcCCCC
Confidence 1 1111 1 237899999999766
No 196
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.77 E-value=0.00021 Score=72.20 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=30.7
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
+||+|||+|+||+.+|..+++ .|.+|+++++..
T Consensus 1 yDViVIGaG~AGl~aA~ala~--~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAAR--MGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHH--CCCCEEEEeccc
Confidence 589999999999999999999 899999999864
No 197
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.77 E-value=3.5e-05 Score=74.03 Aligned_cols=40 Identities=25% Similarity=0.180 Sum_probs=36.9
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~ 55 (388)
.||+|||||+||+++|..|.+ .|.+|+|+|+.+.+||.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~--~G~~V~viEk~~~iGG~~~ 41 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQ--LNKRVLVVEKRNHIGGNCY 41 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCCCCCcee
Confidence 589999999999999999998 8999999999999998753
No 198
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.76 E-value=3.3e-05 Score=76.98 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=36.4
Q ss_pred CcEEEECccHHHHHHHHHHHhhC----CCCcEEEEcCCCCCCCcee
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLL----PQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~----~g~~v~lie~~~~~gg~~~ 55 (388)
++|+|||||.|||+||..|.+.- .+.+|+|+|+.+.+||.++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~ 47 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH 47 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence 57999999999999999999821 1479999999999999873
No 199
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.75 E-value=0.0002 Score=73.29 Aligned_cols=39 Identities=33% Similarity=0.364 Sum_probs=32.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
..||+|||+|.||++||..+++.-++.+|+|+|+.+..+
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~g 41 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIR 41 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCc
Confidence 369999999999999999999732358999999986544
No 200
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.75 E-value=3.6e-05 Score=74.97 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=33.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
.+.+|+|||||++|+++|..|++ .|++|+|+|+.+.+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~--~g~~v~v~Er~~~~ 39 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALAR--QGIKVKLLEQAAEI 39 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHh--CCCcEEEEeeCccc
Confidence 34799999999999999999999 89999999998654
No 201
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.74 E-value=0.00022 Score=71.66 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=64.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..|++ .|.+|+++++. .+. +. ...++.+.+.+.+++.|++++.++.+..
T Consensus 181 ~~~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~-~~l--------~~--~d~~~~~~l~~~l~~~GV~i~~~~~v~~ 247 (499)
T PTZ00052 181 DPGKTLIVGASYIGLETAGFLNE--LGFDVTVAVRS-IPL--------RG--FDRQCSEKVVEYMKEQGTLFLEGVVPIN 247 (499)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcC-ccc--------cc--CCHHHHHHHHHHHHHcCCEEEcCCeEEE
Confidence 34689999999999999999999 89999999864 221 21 2334556677778888999988765421
Q ss_pred --------Eeeeccc-ccccCEEEEeeCCCCC
Q psy4525 92 --------DISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 --------~~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
.+...+. ...+|.|++|+|..|.
T Consensus 248 v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 248 IEKMDDKIKVLFSDGTTELFDTVLYATGRKPD 279 (499)
T ss_pred EEEcCCeEEEEECCCCEEEcCEEEEeeCCCCC
Confidence 1222222 2379999999997763
No 202
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.73 E-value=0.00022 Score=71.07 Aligned_cols=90 Identities=16% Similarity=0.141 Sum_probs=65.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..|.+ .|.+|+++++.+.+. |. ...++...+.+.+++. ++++.++.+..
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l--------~~--~d~~~~~~~~~~l~~~-I~i~~~~~v~~ 234 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSR--LGVKVTVFERGDRIL--------PL--EDPEVSKQAQKILSKE-FKIKLGAKVTS 234 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCcC--------cc--hhHHHHHHHHHHHhhc-cEEEcCCEEEE
Confidence 45899999999999999999999 899999999886643 21 2345666667777777 88887765521
Q ss_pred E-------eee--ccc---ccccCEEEEeeCCCCC
Q psy4525 92 D-------ISL--GDL---TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~-------~~~--~~~---~~~yd~lvlAtG~~~~ 114 (388)
. +.+ .+. ...+|.|++|+|..|.
T Consensus 235 i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~ 269 (460)
T PRK06292 235 VEKSGDEKVEELEKGGKTETIEADYVLVATGRRPN 269 (460)
T ss_pred EEEcCCceEEEEEcCCceEEEEeCEEEEccCCccC
Confidence 1 221 111 2379999999998764
No 203
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.72 E-value=3.4e-05 Score=77.66 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=36.0
Q ss_pred EEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee
Q psy4525 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 16 vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~ 55 (388)
|||||||.+||+||..|++ .|++|+|+|+++.+||.+.
T Consensus 1 vvVIGaG~~GL~aA~~La~--~G~~V~VlE~~~~~GG~~~ 38 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAA--AGIPVTVVEQRDKPGGRAG 38 (502)
T ss_pred CEEECcCHHHHHHHHHHHh--CCCcEEEEECCCCCcCceE
Confidence 6899999999999999999 8999999999999999873
No 204
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.72 E-value=0.00025 Score=68.48 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=33.2
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
||+|||||+||+++|..|.+..+|.+|+++|+.+..++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 69999999999999999998334999999999876665
No 205
>PRK07045 putative monooxygenase; Reviewed
Probab=97.71 E-value=3.8e-05 Score=74.66 Aligned_cols=37 Identities=27% Similarity=0.236 Sum_probs=33.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
..++|+||||||+|+++|..|++ .|++|+|+|+.+.+
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~--~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGA--RGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHh--cCCcEEEEeCCCcc
Confidence 34799999999999999999999 89999999988753
No 206
>PLN02568 polyamine oxidase
Probab=97.71 E-value=5.2e-05 Score=76.57 Aligned_cols=41 Identities=24% Similarity=0.385 Sum_probs=37.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCC-----CcEEEEcCCCCCCCcee
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQ-----STVDIYEKLPVPFGLVR 55 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g-----~~v~lie~~~~~gg~~~ 55 (388)
.++|+|||||+|||+||..|.+ .| ++|+|+|+.+.+||.+.
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~--~g~~~~~~~v~v~E~~~~~GGr~~ 50 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYT--SSAANDMFELTVVEGGDRIGGRIN 50 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHh--cccccCCceEEEEeCCCCcCCeEE
Confidence 3689999999999999999998 55 89999999999999873
No 207
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.71 E-value=0.00025 Score=73.17 Aligned_cols=90 Identities=18% Similarity=0.145 Sum_probs=63.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhh-cCCCcEEEceEEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTG-DNPRVNFYGNICLGQ 91 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~-~~~~i~~~~~~~v~~ 91 (388)
+++|+|||+|+.|+.+|..+.+ .|.+|+++++.+.+. |. ...++...+.+.+ ++.|++++.++.+..
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~--~G~eVTLIe~~~~ll--------~~--~d~eis~~l~~~ll~~~GV~I~~~~~V~~ 379 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTA--LGSEVVSFEYSPQLL--------PL--LDADVAKYFERVFLKSKPVRVHLNTLIEY 379 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHh--CCCeEEEEeccCccc--------cc--CCHHHHHHHHHHHhhcCCcEEEcCCEEEE
Confidence 5789999999999999999999 899999999987653 32 2334555555543 567899988766521
Q ss_pred E--------eee--c-------cc---------ccccCEEEEeeCCCCC
Q psy4525 92 D--------ISL--G-------DL---------TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~--~-------~~---------~~~yd~lvlAtG~~~~ 114 (388)
. +.+ . +. ...+|.|++|+|..|.
T Consensus 380 I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pn 428 (659)
T PTZ00153 380 VRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPN 428 (659)
T ss_pred EEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccC
Confidence 1 111 1 01 2478999999997763
No 208
>PLN02546 glutathione reductase
Probab=97.71 E-value=0.00023 Score=72.21 Aligned_cols=91 Identities=13% Similarity=0.105 Sum_probs=66.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++|+|||+|+.|+.+|..|.+ .+.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~--~g~~Vtlv~~~~~il--------~~--~d~~~~~~l~~~L~~~GV~i~~~~~v~~ 318 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNG--LKSDVHVFIRQKKVL--------RG--FDEEVRDFVAEQMSLRGIEFHTEESPQA 318 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHh--cCCeEEEEEeccccc--------cc--cCHHHHHHHHHHHHHCCcEEEeCCEEEE
Confidence 45799999999999999999998 899999999876542 21 2344556667777888999987765422
Q ss_pred E---------eeeccccc-ccCEEEEeeCCCCC
Q psy4525 92 D---------ISLGDLTN-AYHAVVLTYGADND 114 (388)
Q Consensus 92 ~---------~~~~~~~~-~yd~lvlAtG~~~~ 114 (388)
. +...+... .+|.|++|+|..++
T Consensus 319 i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pn 351 (558)
T PLN02546 319 IIKSADGSLSLKTNKGTVEGFSHVMFATGRKPN 351 (558)
T ss_pred EEEcCCCEEEEEECCeEEEecCEEEEeeccccC
Confidence 1 11122222 48999999998774
No 209
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.69 E-value=0.00028 Score=70.83 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=31.2
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
.||+|||+|.||+.||..+++ .|. |+|+|+.+..+
T Consensus 3 ~DVlVVG~G~AGl~AA~~aa~--~G~-V~lleK~~~~~ 37 (488)
T TIGR00551 3 CDVVVIGSGAAGLSAALALAD--QGR-VIVLSKAPVTE 37 (488)
T ss_pred ccEEEECccHHHHHHHHHHHh--CCC-EEEEEccCCCC
Confidence 599999999999999999998 787 99999986544
No 210
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.68 E-value=5e-05 Score=75.43 Aligned_cols=38 Identities=34% Similarity=0.426 Sum_probs=35.9
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
+|+|||||++||+||..|.+ .|++|+|+|+.+.+||.+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~--~G~~v~vlE~~~~~GG~~ 38 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLAD--AGHTPIVLEARDVLGGKV 38 (453)
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCCCc
Confidence 58999999999999999999 899999999999999975
No 211
>PRK09126 hypothetical protein; Provisional
Probab=97.67 E-value=5.2e-05 Score=73.75 Aligned_cols=35 Identities=29% Similarity=0.616 Sum_probs=32.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
.++|+||||||+|+++|..|++ .|++|+|+|+.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~--~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAG--SGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCCc
Confidence 4799999999999999999999 8999999998764
No 212
>PRK08013 oxidoreductase; Provisional
Probab=97.66 E-value=5.4e-05 Score=73.95 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=32.5
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
.++|+||||||+|+++|..|++ .|++|+|+|+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~--~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG--SGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh--CCCEEEEEeCCCC
Confidence 4799999999999999999999 8999999998765
No 213
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.65 E-value=5.9e-05 Score=73.26 Aligned_cols=34 Identities=26% Similarity=0.308 Sum_probs=31.5
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
.++|+||||||+|+++|..|++ .|++|+|||+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~--~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAK--QGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHh--CCCcEEEEcCCC
Confidence 3699999999999999999999 899999999764
No 214
>KOG1276|consensus
Probab=97.65 E-value=7.1e-05 Score=70.88 Aligned_cols=46 Identities=28% Similarity=0.435 Sum_probs=41.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY 56 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~ 56 (388)
...++|+|+|||.+||++|++|+++.+...+++||+.++.||.++.
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 4578999999999999999999997777788999999999998855
No 215
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.64 E-value=6.4e-05 Score=72.99 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=33.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
.++|+||||||||+++|..|.+ .|++|+|+|+.+.+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~--~G~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQ--SGLRVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCc
Confidence 4799999999999999999999 89999999988664
No 216
>PRK06753 hypothetical protein; Provisional
Probab=97.63 E-value=5.9e-05 Score=72.84 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=32.1
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
.+|+||||||||+++|..|++ .|++|+|+|+.+.+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~--~g~~v~v~E~~~~~ 35 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQE--QGHEVKVFEKNESV 35 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCcc
Confidence 379999999999999999999 89999999988753
No 217
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.63 E-value=7.3e-05 Score=75.10 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=37.6
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~ 55 (388)
+||||||||.+|+++|..|++ .|.+|+|+|+++.+||...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~--~G~~V~vlE~~~~~GG~~~ 40 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAV--KGAKVLVLERYLIPGGSAG 40 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHH--CCCcEEEEECCCCCCCcee
Confidence 489999999999999999999 9999999999999998874
No 218
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.63 E-value=9.1e-05 Score=74.13 Aligned_cols=43 Identities=30% Similarity=0.410 Sum_probs=38.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhC--CCCcEEEEcCCCCCCCce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLL--PQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~--~g~~v~lie~~~~~gg~~ 54 (388)
..++++|||||.|||+||.+|.+.. +|.+|+|+|+.+.+||.+
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~ 65 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSL 65 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCc
Confidence 3579999999999999999999832 478999999999999986
No 219
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.63 E-value=0.00039 Score=70.70 Aligned_cols=34 Identities=32% Similarity=0.295 Sum_probs=31.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..||+|||+|.||++||..+ + .|.+|+|+|+.+.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~--~G~~VilleK~~~ 40 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-E--RGKNVVIVSKGLF 40 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-h--cCCCEEEEEccCC
Confidence 47999999999999999999 7 8999999999754
No 220
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.63 E-value=5.8e-05 Score=73.11 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=31.6
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
||+||||||||+++|..|++ .|++|+|+|+.+.+
T Consensus 1 dViIvGaG~aGl~~A~~L~~--~G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALAR--SGLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhc--CCCEEEEEeCCCcc
Confidence 69999999999999999999 89999999998653
No 221
>PRK10262 thioredoxin reductase; Provisional
Probab=97.61 E-value=0.00048 Score=65.17 Aligned_cols=89 Identities=16% Similarity=0.163 Sum_probs=64.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++|+|||+|..|+.+|..|++ .+.+|+++++.+.+. . ...+...+.+.+++.+++++.++.+..
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~--~~~~Vtlv~~~~~~~--------~----~~~~~~~~~~~l~~~gV~i~~~~~v~~ 210 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSN--IASEVHLIHRRDGFR--------A----EKILIKRLMDKVENGNIILHTNRTLEE 210 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--hCCEEEEEEECCccC--------C----CHHHHHHHHhhccCCCeEEEeCCEEEE
Confidence 45799999999999999999999 789999999875421 1 123455667777888999887765421
Q ss_pred ---------Eeeecc-------cccccCEEEEeeCCCCC
Q psy4525 92 ---------DISLGD-------LTNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ---------~~~~~~-------~~~~yd~lvlAtG~~~~ 114 (388)
.+.... ....+|.||+|+|..|+
T Consensus 211 v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~ 249 (321)
T PRK10262 211 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPN 249 (321)
T ss_pred EEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccC
Confidence 122211 12378999999998774
No 222
>KOG1336|consensus
Probab=97.61 E-value=0.00034 Score=67.37 Aligned_cols=92 Identities=21% Similarity=0.232 Sum_probs=71.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
....|+++|+|..|+.+|..|.. .+.+||+|++++.+- |. .....+.+.+..++++.++++++++.+..
T Consensus 212 ~~~~vV~vG~G~ig~Evaa~l~~--~~~~VT~V~~e~~~~--------~~-lf~~~i~~~~~~y~e~kgVk~~~~t~~s~ 280 (478)
T KOG1336|consen 212 LGGKVVCVGGGFIGMEVAAALVS--KAKSVTVVFPEPWLL--------PR-LFGPSIGQFYEDYYENKGVKFYLGTVVSS 280 (478)
T ss_pred cCceEEEECchHHHHHHHHHHHh--cCceEEEEccCccch--------hh-hhhHHHHHHHHHHHHhcCeEEEEecceee
Confidence 35789999999999999999999 799999999886532 22 23456777888889999999998887642
Q ss_pred E----------eeeccccc-ccCEEEEeeCCCCC
Q psy4525 92 D----------ISLGDLTN-AYHAVVLTYGADND 114 (388)
Q Consensus 92 ~----------~~~~~~~~-~yd~lvlAtG~~~~ 114 (388)
- +.+.+... ..|.||+.+|+.|.
T Consensus 281 l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 281 LEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPN 314 (478)
T ss_pred cccCCCCcEEEEEeccCCEeccCeEEEeeccccc
Confidence 1 33333333 79999999999884
No 223
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.59 E-value=0.00086 Score=63.51 Aligned_cols=79 Identities=10% Similarity=-0.066 Sum_probs=51.0
Q ss_pred CCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccC----CCCCcccCCCccccCC
Q psy4525 268 NCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCV----DSDIPFNEKSCTVIPK 343 (388)
Q Consensus 268 ~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~----~~~l~~~~~~gi~l~~ 343 (388)
+++.||++++++.+..+..++ ....+ .+.+++++.||.+|+|+|=...+- ..+.++.+..|+.+-+
T Consensus 121 ~~~~gV~i~~~~~v~~v~~~~--~~f~l--------~t~~g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I~~ 190 (408)
T COG2081 121 LEALGVTIRTRSRVSSVEKDD--SGFRL--------DTSSGETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTITP 190 (408)
T ss_pred HHHcCcEEEecceEEeEEecC--ceEEE--------EcCCCCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCcccc
Confidence 347899999999999998643 22222 245566899999999999654442 1345666667776543
Q ss_pred C--CCCeecchhhHHh
Q psy4525 344 E--GVPVVTWEGWKAI 357 (388)
Q Consensus 344 ~--~~~~~~~~~w~~~ 357 (388)
- .....+++ |..+
T Consensus 191 ~rpalvpft~~-~~~~ 205 (408)
T COG2081 191 LRPALVPFTLD-ESFL 205 (408)
T ss_pred CccccCCccCC-HHHH
Confidence 2 22344444 5555
No 224
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.58 E-value=7.1e-05 Score=72.86 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=31.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCC---CCcEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLP---QSTVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~---g~~v~lie~~ 47 (388)
..++|+||||||||+++|..|++ . |++|+|||+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~--~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSR--LSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhh--cccCCCEEEEEeCC
Confidence 35799999999999999999999 7 9999999994
No 225
>PLN02529 lysine-specific histone demethylase 1
Probab=97.57 E-value=0.00011 Score=76.41 Aligned_cols=42 Identities=36% Similarity=0.370 Sum_probs=38.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
...++|+|||||+||++||..|.+ .|++|+|+|+.+.+||.+
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~--~g~~v~v~E~~~~~GG~~ 199 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLS--FGFKVVVLEGRNRPGGRV 199 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHH--cCCcEEEEecCccCcCce
Confidence 346899999999999999999999 899999999999999876
No 226
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.57 E-value=8.6e-05 Score=72.27 Aligned_cols=35 Identities=31% Similarity=0.480 Sum_probs=32.5
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
+++|+||||||+|+++|..|++ .|++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~--~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHK--AGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHH--CCCCEEEEECCCC
Confidence 3689999999999999999999 8999999999874
No 227
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.57 E-value=8.2e-05 Score=72.35 Aligned_cols=33 Identities=33% Similarity=0.530 Sum_probs=31.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
.++|+||||||+|+++|..|++ .|++|+|+|+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~--~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR--AGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh--CCCcEEEEccC
Confidence 4799999999999999999999 99999999997
No 228
>PRK05868 hypothetical protein; Validated
Probab=97.56 E-value=9.7e-05 Score=71.42 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=32.4
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
++|+||||||+|+++|..|++ .|++|+|||+.+.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~--~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR--HGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCCEEEEcCCCCC
Confidence 589999999999999999999 89999999988654
No 229
>PLN02676 polyamine oxidase
Probab=97.56 E-value=0.00012 Score=73.35 Aligned_cols=44 Identities=27% Similarity=0.328 Sum_probs=39.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCCCCCCceee
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLPVPFGLVRY 56 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~~~gg~~~~ 56 (388)
...++|+|||||++||+||..|.+ .|. +|+|+|+.+.+||.+..
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~--~g~~~v~vlE~~~~~GG~~~~ 68 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSE--AGIEDILILEATDRIGGRMRK 68 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH--cCCCcEEEecCCCCCCCccee
Confidence 346799999999999999999999 787 69999999999997743
No 230
>KOG0685|consensus
Probab=97.55 E-value=0.00012 Score=70.35 Aligned_cols=42 Identities=26% Similarity=0.264 Sum_probs=36.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
...+|||||||.||++||.+|.+. -..+++|+|..+++||.+
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~-gf~~~~IlEa~dRIGGRI 61 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLEN-GFIDVLILEASDRIGGRI 61 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHh-CCceEEEEEeccccCceE
Confidence 456899999999999999999962 346899999999999976
No 231
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.55 E-value=8.1e-05 Score=72.12 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=30.9
Q ss_pred cEEEECccHHHHHHHHHHHhhCCC-CcEEEEcCCCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQ-STVDIYEKLPV 49 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g-~~v~lie~~~~ 49 (388)
||+||||||+|+++|..|++ .| ++|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~--~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSR--LGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhc--CCCceEEEEeCCCc
Confidence 69999999999999999999 89 99999998754
No 232
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.55 E-value=0.00024 Score=62.25 Aligned_cols=132 Identities=13% Similarity=0.166 Sum_probs=60.1
Q ss_pred EEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCH-HHHHHHhcCCCceE-Eeccc
Q psy4525 156 TILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTI-KEFREMTKLPHVQT-VFRNE 233 (388)
Q Consensus 156 vVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~-~el~~l~~~~~~~~-~~~~~ 233 (388)
+|||+|++|+-+|..|. +.+.++|+++.|.+..--.... .....+ ..|.... .+.-.
T Consensus 1 ~IIGaG~aGl~~a~~l~--------------------~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~-~~~~~~~~~~~~~ 59 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLL--------------------ERGIDPVVVLERNDRPGGVWRRYYSYTRL-HSPSFFSSDFGLP 59 (203)
T ss_dssp EEE--SHHHHHHHHHHH--------------------HTT---EEEEESSSSSTTHHHCH-TTTT--BSSSCCTGGSS--
T ss_pred CEECcCHHHHHHHHHHH--------------------hCCCCcEEEEeCCCCCCCeeEEeCCCCcc-ccCccccccccCC
Confidence 69999999999999775 3566559999988543211000 000000 1111000 00000
Q ss_pred ccc--cchhhh----ccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCc
Q psy4525 234 QLC--GVHEAS----ATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTED 307 (388)
Q Consensus 234 ~~~--~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~ 307 (388)
++. .....+ .......+.+.+++..+.. +.++++++++.++++..++++ -.+++ .+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~--------~~~l~i~~~~~V~~v~~~~~~--w~v~~--------~~ 121 (203)
T PF13738_consen 60 DFESFSFDDSPEWRWPHDFPSGEEVLDYLQEYAE--------RFGLEIRFNTRVESVRRDGDG--WTVTT--------RD 121 (203)
T ss_dssp CCCHSCHHHHHHHHHSBSSEBHHHHHHHHHHHHH--------HTTGGEETS--EEEEEEETTT--EEEEE--------TT
T ss_pred cccccccccCCCCCCCcccCCHHHHHHHHHHHHh--------hcCcccccCCEEEEEEEeccE--EEEEE--------Ee
Confidence 000 011110 0111224455566655543 345568899999999876544 23332 33
Q ss_pred eeEEecceEEEcccc--CCcc
Q psy4525 308 TELIPSGIAFRSIGY--QSRC 326 (388)
Q Consensus 308 ~~~l~~D~Vi~a~G~--~p~~ 326 (388)
++++.||.||+|||. .|+.
T Consensus 122 ~~~~~a~~VVlAtG~~~~p~~ 142 (203)
T PF13738_consen 122 GRTIRADRVVLATGHYSHPRI 142 (203)
T ss_dssp S-EEEEEEEEE---SSCSB--
T ss_pred cceeeeeeEEEeeeccCCCCc
Confidence 468899999999997 4544
No 233
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.53 E-value=0.0001 Score=72.17 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=31.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
.++|+||||||+|+++|..|.+ .|++|+|+|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~--~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE--SDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh--CCCEEEEEcCC
Confidence 4799999999999999999999 89999999985
No 234
>PRK07538 hypothetical protein; Provisional
Probab=97.53 E-value=0.0001 Score=72.24 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=31.6
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
++|+||||||+|+++|..|++ .|++|+|||+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQ--RGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCcEEEEEcCCc
Confidence 379999999999999999999 8999999999864
No 235
>PRK06847 hypothetical protein; Provisional
Probab=97.52 E-value=0.0012 Score=63.85 Aligned_cols=47 Identities=13% Similarity=0.083 Sum_probs=34.1
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.|+++++++.++++..++ +. ..+.+ .+++++.+|.||.|+|..+..
T Consensus 119 ~~gv~v~~~~~v~~i~~~~-~~-~~v~~--------~~g~~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 119 AAGADVRLGTTVTAIEQDD-DG-VTVTF--------SDGTTGRYDLVVGADGLYSKV 165 (375)
T ss_pred HhCCEEEeCCEEEEEEEcC-CE-EEEEE--------cCCCEEEcCEEEECcCCCcch
Confidence 4689999999999987643 22 22332 344579999999999987654
No 236
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.52 E-value=0.00012 Score=71.58 Aligned_cols=34 Identities=29% Similarity=0.310 Sum_probs=32.0
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
.+|+|||||++|+++|..|++ .|++|+|+|+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~--~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA--RGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCc
Confidence 689999999999999999999 8999999998764
No 237
>PRK08244 hypothetical protein; Provisional
Probab=97.52 E-value=0.00012 Score=73.67 Aligned_cols=35 Identities=29% Similarity=0.456 Sum_probs=32.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
.++|+||||||+|+++|..|++ .|++|+|+|+.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~--~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELAL--AGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCC
Confidence 3699999999999999999999 8999999998764
No 238
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.52 E-value=9.7e-05 Score=71.85 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=32.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
..++|+||||||+|+++|..|++ .|++|+|+|+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~--~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQ--HGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence 45899999999999999999999 899999999874
No 239
>PRK07588 hypothetical protein; Provisional
Probab=97.50 E-value=0.00012 Score=71.29 Aligned_cols=35 Identities=26% Similarity=0.235 Sum_probs=31.9
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
.+|+||||||+|+++|..|++ .|++|+|+|+.+..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~--~G~~v~v~E~~~~~ 35 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR--YGHEPTLIERAPEL 35 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH--CCCceEEEeCCCCc
Confidence 379999999999999999999 89999999987653
No 240
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.50 E-value=0.0005 Score=66.21 Aligned_cols=91 Identities=18% Similarity=0.166 Sum_probs=62.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhC--CC--CcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLL--PQ--STVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNIC 88 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~--~g--~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 88 (388)
.++|+|||+|++|+.+|..|.+.. .+ .+|+++. .+.+. +. ....+...+.+.+++.+++++.++.
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~-~~~~l--------~~--~~~~~~~~~~~~l~~~gV~v~~~~~ 213 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIA-GASLL--------PG--FPAKVRRLVLRLLARRGIEVHEGAP 213 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEe-CCccc--------cc--CCHHHHHHHHHHHHHCCCEEEeCCe
Confidence 469999999999999999998632 23 4899993 32221 11 2234556667778888999998876
Q ss_pred EEE----Eeeeccc-ccccCEEEEeeCCCCC
Q psy4525 89 LGQ----DISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 89 v~~----~~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
+.. .+.+.+. ...+|.||+|+|..++
T Consensus 214 v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 214 VTRGPDGALILADGRTLPADAILWATGARAP 244 (364)
T ss_pred eEEEcCCeEEeCCCCEEecCEEEEccCCChh
Confidence 532 2334333 3489999999998764
No 241
>PRK06185 hypothetical protein; Provisional
Probab=97.50 E-value=0.00013 Score=71.37 Aligned_cols=36 Identities=31% Similarity=0.531 Sum_probs=32.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..+||+||||||+|+++|..|++ .|++|+|+|+.+.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~--~G~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLAR--AGVDVTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCc
Confidence 45799999999999999999999 8999999998753
No 242
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.49 E-value=0.00013 Score=72.74 Aligned_cols=39 Identities=38% Similarity=0.517 Sum_probs=36.3
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~ 55 (388)
+|+|||||.+|+++|..|.+ .|++|+|+|+.+.+||.+.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~--~G~~v~v~E~~~~~GG~~~ 39 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVD--AGHEVDIYESRSFIGGKVG 39 (474)
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCcEEEEEecCCCCceee
Confidence 58999999999999999999 8999999999999998763
No 243
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.48 E-value=0.00013 Score=71.09 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=32.5
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..+|+||||||+|+++|..|++ .|++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~--~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL--AGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh--cCCCEEEEEcCCc
Confidence 4689999999999999999999 8999999999864
No 244
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.48 E-value=0.00044 Score=67.75 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=30.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
..+||+|||||.||+.||.+.++ .|.++.++--+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaAR--mG~ktlLlT~~ 36 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAAR--MGAKTLLLTLN 36 (621)
T ss_pred CCCceEEECCCccchHHHHhhhc--cCCeEEEEEcC
Confidence 34899999999999999999999 99999888654
No 245
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.46 E-value=0.00017 Score=69.17 Aligned_cols=42 Identities=31% Similarity=0.305 Sum_probs=39.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
....+|+|||+|.+||++|..|.+ .|++|+|+|..+.+||.+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~k--aG~~v~ilEar~r~GGR~ 46 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKK--AGYQVQILEARDRVGGRS 46 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhh--cCcEEEEEeccCCcCcee
Confidence 567899999999999999999999 999999999999999876
No 246
>PLN02487 zeta-carotene desaturase
Probab=97.46 E-value=0.00016 Score=73.25 Aligned_cols=40 Identities=43% Similarity=0.588 Sum_probs=37.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
+++|+|||+|++|+++|..|.+ .|++|+|+|+.+.+||.+
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~--~g~~v~i~E~~~~~gG~~ 114 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLD--QGHEVDIYESRPFIGGKV 114 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHh--CCCeeEEEecCCCCCCce
Confidence 3599999999999999999999 899999999999999876
No 247
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.46 E-value=0.00017 Score=75.33 Aligned_cols=41 Identities=37% Similarity=0.430 Sum_probs=38.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
..++|+|||||++|++||..|.+ .|.+|+|+|+.+.+||.+
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~--~g~~v~v~E~~~r~GGr~ 277 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLS--MGFKVVVLEGRARPGGRV 277 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeccccCCCcc
Confidence 46899999999999999999999 899999999999999876
No 248
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.44 E-value=0.00014 Score=67.25 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=37.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
.++.+|+|||+|.+||+||..|.+ -.+||+||.....||--
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~---rhdVTLfEA~~rlGGha 46 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSR---RHDVTLFEADRRLGGHA 46 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhc---ccceEEEeccccccCcc
Confidence 467899999999999999999998 68999999999998864
No 249
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.44 E-value=0.0021 Score=58.52 Aligned_cols=56 Identities=11% Similarity=0.060 Sum_probs=38.9
Q ss_pred ceeEEEEecCcceeeeeCCCC-ceeEEEEccCccccC---CceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNG-AITGINFANQQALVT---EDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~-~v~~v~~~~~~~~~~---~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.|+++++++.+.++..++++ ++.++.......... .+...+.|+.||.|||....
T Consensus 112 e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~ 171 (254)
T TIGR00292 112 QAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAE 171 (254)
T ss_pred HcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCch
Confidence 568999999999998765432 688887642210001 13468999999999997754
No 250
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.44 E-value=0.00026 Score=61.87 Aligned_cols=52 Identities=12% Similarity=0.050 Sum_probs=36.3
Q ss_pred ceeEEEEecCcceeeeeCCCCce----eEEEEccCccccCCceeEEecceEEEccccCCccC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAI----TGINFANQQALVTEDTELIPSGIAFRSIGYQSRCV 327 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v----~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~ 327 (388)
..++++++...+.++.... +.+ ..+.. ..++++.++.+|.||+|||.+|+.+
T Consensus 70 ~~~v~~~~~~~v~~i~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~d~lviAtG~~~~~~ 125 (201)
T PF07992_consen 70 NRGVEIRLNAKVVSIDPES-KRVVCPAVTIQV-----VETGDGREIKYDYLVIATGSRPRTP 125 (201)
T ss_dssp HHTHEEEHHHTEEEEEEST-TEEEETCEEEEE-----EETTTEEEEEEEEEEEESTEEEEEE
T ss_pred cceEEEeeccccccccccc-cccccCccccee-----eccCCceEecCCeeeecCcccccee
Confidence 4678888888888887643 322 01110 1256788999999999999988754
No 251
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.43 E-value=0.00099 Score=66.16 Aligned_cols=64 Identities=8% Similarity=-0.023 Sum_probs=38.2
Q ss_pred hHHHHHHHhhCCCCCCCCCCceeEE--EEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccc--cCCc
Q psy4525 250 KRLTELILKTSNPDESKSNCSKYFR--PIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIG--YQSR 325 (388)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~gv~--~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G--~~p~ 325 (388)
+.+.+++..++. ..++. +++++.|+++...+ +.. .+...++ .+...+..+|.||+|+| ..|+
T Consensus 111 ~ev~~YL~~~a~--------~fgl~~~I~~~t~V~~V~~~~-~~w-~V~~~~~----~~~~~~~~~d~VIvAtG~~~~P~ 176 (461)
T PLN02172 111 REVLAYLQDFAR--------EFKIEEMVRFETEVVRVEPVD-GKW-RVQSKNS----GGFSKDEIFDAVVVCNGHYTEPN 176 (461)
T ss_pred HHHHHHHHHHHH--------HcCCcceEEecCEEEEEeecC-CeE-EEEEEcC----CCceEEEEcCEEEEeccCCCCCc
Confidence 456666666543 34555 78899999997643 322 2222111 11223568999999999 4565
Q ss_pred cC
Q psy4525 326 CV 327 (388)
Q Consensus 326 ~~ 327 (388)
.+
T Consensus 177 ~P 178 (461)
T PLN02172 177 VA 178 (461)
T ss_pred CC
Confidence 43
No 252
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.43 E-value=0.00058 Score=66.52 Aligned_cols=49 Identities=8% Similarity=0.008 Sum_probs=29.7
Q ss_pred CceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 269 CSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 269 ~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.+.||++++++.+..+..++ +.+..++. .+..++.||.||+|+|-...+
T Consensus 120 ~~~gv~i~~~~~V~~i~~~~-~~~f~v~~--------~~~~~~~a~~vILAtGG~S~p 168 (409)
T PF03486_consen 120 KRLGVEIHFNTRVKSIEKKE-DGVFGVKT--------KNGGEYEADAVILATGGKSYP 168 (409)
T ss_dssp HHHT-EEE-S--EEEEEEET-TEEEEEEE--------TTTEEEEESEEEE----SSSG
T ss_pred HHcCCEEEeCCEeeeeeecC-CceeEeec--------cCcccccCCEEEEecCCCCcc
Confidence 36799999999999998643 44555543 345689999999999976543
No 253
>PRK06126 hypothetical protein; Provisional
Probab=97.42 E-value=0.00019 Score=73.02 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=33.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..++|+||||||+|+++|..|++ .|++|+|||+.+.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~--~G~~v~viEr~~~ 41 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGR--RGVDSILVERKDG 41 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCC
Confidence 35799999999999999999999 8999999998753
No 254
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.40 E-value=0.00025 Score=72.20 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=33.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
...+|+||||||+|+++|..|.+ .|++|+|||+.+.+
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~--~G~~v~viE~~~~~ 58 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQ--QGVPVVLLDDDDTL 58 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCCCCC
Confidence 45799999999999999999999 89999999998643
No 255
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.39 E-value=0.00016 Score=70.93 Aligned_cols=38 Identities=29% Similarity=0.347 Sum_probs=32.9
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
||+|||+|.||+.||..+++ .|.+|+|+|+.+..||..
T Consensus 1 DVvVIG~G~AGl~AA~~Aae--~G~~V~lvek~~~~gg~~ 38 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAE--AGAKVLLVEKGPRLGGSS 38 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHH--TTT-EEEEESSSGGGSGG
T ss_pred CEEEECCCHHHHHHHHHHhh--hcCeEEEEEeeccccccc
Confidence 79999999999999999999 999999999998876643
No 256
>PLN02612 phytoene desaturase
Probab=97.39 E-value=0.00023 Score=72.59 Aligned_cols=42 Identities=26% Similarity=0.228 Sum_probs=38.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
..+++|+|||||++|+++|.+|.+ .|.+++++|+.+.+||..
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~--~g~~~~~~e~~~~~gG~~ 132 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLAD--AGHKPILLEARDVLGGKV 132 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHh--cCCeEEEEecCCCCCCcc
Confidence 346899999999999999999999 899999999998888875
No 257
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.39 E-value=0.00023 Score=71.66 Aligned_cols=38 Identities=37% Similarity=0.479 Sum_probs=35.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
..||||||+|.||++||..+++ .|.+|+|+|+.+..||
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~--~Ga~VivlEK~~~~GG 98 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKD--AGMNPVILEKMPVAGG 98 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCCC
Confidence 5799999999999999999999 8999999999987765
No 258
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.38 E-value=0.00021 Score=70.15 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=31.4
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCC-CcEEEEcCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQ-STVDIYEKLPVP 50 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g-~~v~lie~~~~~ 50 (388)
.+|+|||||++|+++|..|++ .| ++|+|||+.+.+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~--~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCK--HSHLNVQLFEAAPAF 36 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHh--cCCCCEEEEecCCcC
Confidence 379999999999999999999 77 699999998764
No 259
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.38 E-value=0.0029 Score=57.83 Aligned_cols=56 Identities=11% Similarity=0.056 Sum_probs=38.8
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccc---cCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQAL---VTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~---~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.|+++++++.+.++..++++++.++........ ...+...+.|+.||.|+|....
T Consensus 116 ~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~ 174 (257)
T PRK04176 116 DAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE 174 (257)
T ss_pred HcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence 5689999999999987654457877765421000 0123468999999999997654
No 260
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.38 E-value=0.00049 Score=68.92 Aligned_cols=77 Identities=17% Similarity=0.112 Sum_probs=56.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++|+|||+|++|+++|..|++ .|.+|+++|+.+.. ......+.+++.|+.++.+....
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~--~G~~V~~~d~~~~~-----------------~~~~~~~~l~~~gv~~~~~~~~~- 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLE--LGARVTVVDDGDDE-----------------RHRALAAILEALGATVRLGPGPT- 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCchh-----------------hhHHHHHHHHHcCCEEEECCCcc-
Confidence 45789999999999999999998 89999999976321 12223444566788887665432
Q ss_pred EeeecccccccCEEEEeeCCCCC
Q psy4525 92 DISLGDLTNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~~~~~~~~~~yd~lvlAtG~~~~ 114 (388)
....+|.||+++|..+.
T Consensus 75 ------~~~~~D~Vv~s~Gi~~~ 91 (480)
T PRK01438 75 ------LPEDTDLVVTSPGWRPD 91 (480)
T ss_pred ------ccCCCCEEEECCCcCCC
Confidence 12368999999998764
No 261
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.37 E-value=0.00021 Score=73.35 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=33.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
.++.+|+|||||++|+++|..|++ .|++|+|||+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r--~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKK--KGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHh--cCCeEEEEeccc
Confidence 356899999999999999999999 899999999875
No 262
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.36 E-value=0.00026 Score=70.63 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=33.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
...||||||+|+||++||..+++ .|.+|+|+|+.+.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~--~G~~V~vlEk~~~ 38 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAARE--AGASVLLLEAAPR 38 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCC
Confidence 34799999999999999999999 8999999999863
No 263
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.36 E-value=0.00045 Score=63.27 Aligned_cols=39 Identities=28% Similarity=0.147 Sum_probs=36.8
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
+|++|||+|.+|+.+|..+.+ .|.+|.|+|+.+++||.+
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~--~gk~VLIvekR~HIGGNa 40 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQ--LGKRVLIVEKRNHIGGNA 40 (374)
T ss_pred CcEEEECCchhHHHHHHHHHH--cCCEEEEEeccccCCCcc
Confidence 689999999999999998888 899999999999999986
No 264
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.36 E-value=0.00025 Score=68.63 Aligned_cols=34 Identities=38% Similarity=0.534 Sum_probs=31.2
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
++|+|||||++|+.+|..|++ .|++|+|+|+.+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr--~Gl~V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAK--RGVPVELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCcEEEEEccCc
Confidence 589999999999999999999 8999999996543
No 265
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.35 E-value=0.00026 Score=69.34 Aligned_cols=35 Identities=14% Similarity=0.394 Sum_probs=32.5
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
++|+|||||.+|+++|.+|++ .|.+|+|+|+++.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~--~g~~V~vle~~~~~ 36 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQ--RGYQVTVFDRHRYA 36 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCC
Confidence 599999999999999999999 89999999998643
No 266
>KOG2404|consensus
Probab=97.33 E-value=0.00085 Score=61.46 Aligned_cols=39 Identities=26% Similarity=0.332 Sum_probs=34.9
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
..|||||+|.|||+++..+.. .+-.|+++|+...+||..
T Consensus 10 spvvVIGgGLAGLsasn~iin--~gg~V~llek~~s~GGNS 48 (477)
T KOG2404|consen 10 SPVVVIGGGLAGLSASNDIIN--KGGIVILLEKAGSIGGNS 48 (477)
T ss_pred CcEEEECCchhhhhhHHHHHh--cCCeEEEEeccCCcCCcc
Confidence 379999999999999999999 777799999998888754
No 267
>PLN02985 squalene monooxygenase
Probab=97.33 E-value=0.00028 Score=71.04 Aligned_cols=36 Identities=28% Similarity=0.285 Sum_probs=32.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
...+||+|||||++|+++|..|++ .|.+|+|+|+.+
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~--~G~~V~vlEr~~ 76 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAK--DGRRVHVIERDL 76 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHH--cCCeEEEEECcC
Confidence 346899999999999999999999 899999999874
No 268
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.32 E-value=0.0012 Score=55.53 Aligned_cols=139 Identities=14% Similarity=0.136 Sum_probs=71.3
Q ss_pred EEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcc-cccCCHH-HHHHHhcCCCceEEeccc
Q psy4525 156 TILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGAL-QVAFTIK-EFREMTKLPHVQTVFRNE 233 (388)
Q Consensus 156 vVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~-~~~~~~~-el~~l~~~~~~~~~~~~~ 233 (388)
+|||+|.+|+-++..|.+.. ......+|+++.+.+.. -.++... .-..+.+.+.-.+.+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~----------------~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~ 64 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA----------------DPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPD 64 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc----------------CCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccc
Confidence 59999999999999887221 01233579999986664 2233332 223355655544444332
Q ss_pred c-----cccchhhhc----cc---c-chhhHHHHHHHhhCCCCCCCCCCceeEEEE-ecCcceeeeeCCCCceeEEEEcc
Q psy4525 234 Q-----LCGVHEASA----TL---A-RPRKRLTELILKTSNPDESKSNCSKYFRPI-FLRSPTEFKLNDNGAITGINFAN 299 (388)
Q Consensus 234 ~-----~~~~~~~~~----~l---~-~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~-~~~~~~~i~~~~~~~v~~v~~~~ 299 (388)
+ .+|+..... .. . -+|.-.-++|...+..... ....++++. ....++.+...+++. .+
T Consensus 65 ~~~~~f~~Wl~~~~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~--~~~~~i~v~~~~~~V~~i~~~~~~~--~v---- 136 (156)
T PF13454_consen 65 DPGDDFVDWLRANGADEAEEIDPDDFPPRALFGEYLRDRFDRLLA--RLPAGITVRHVRAEVVDIRRDDDGY--RV---- 136 (156)
T ss_pred cCCCCHHHHHHhcCcccccccccccCCCHHHHHHHHHHHHHHHHH--hhcCCcEEEEEeeEEEEEEEcCCcE--EE----
Confidence 2 223333221 00 0 0122222333332221111 013444433 234566776654442 22
Q ss_pred CccccCCceeEEecceEEEcccc
Q psy4525 300 QQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 300 ~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
.+.++..+.+|.||+|||.
T Consensus 137 ----~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 137 ----VTADGQSIRADAVVLATGH 155 (156)
T ss_pred ----EECCCCEEEeCEEEECCCC
Confidence 2455678999999999995
No 269
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.31 E-value=0.00028 Score=69.79 Aligned_cols=37 Identities=41% Similarity=0.498 Sum_probs=33.5
Q ss_pred cEEEECccHHHHHHHHHHHhhCCC-CcEEEEcCCCCCCCc
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQ-STVDIYEKLPVPFGL 53 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g-~~v~lie~~~~~gg~ 53 (388)
||||||+|.||++||..+++ .| .+|+|+|+.+..||.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~--~G~~~V~vlEk~~~~gg~ 38 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKK--AGAANVVLLEKMPVIGGN 38 (439)
T ss_pred CEEEECCCHHHHHHHHHHHH--cCCccEEEEecCCCCCCc
Confidence 69999999999999999999 89 999999998776543
No 270
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.30 E-value=0.00032 Score=67.77 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=32.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
.+||+|||||.+|+++|..|++ .|.+|+|+|+....
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~--~g~~V~lie~~~~~ 38 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLAR--RGLRVLGLDRFMPP 38 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHH--CCCeEEEEecccCC
Confidence 4799999999999999999999 89999999998543
No 271
>PTZ00367 squalene epoxidase; Provisional
Probab=97.29 E-value=0.00032 Score=71.26 Aligned_cols=36 Identities=28% Similarity=0.239 Sum_probs=33.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
+..++|+|||||++|+++|..|++ .|.+|+|+|+.+
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar--~G~~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSK--QGRKVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHh--cCCEEEEEcccc
Confidence 346899999999999999999999 899999999875
No 272
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.29 E-value=0.00031 Score=69.10 Aligned_cols=43 Identities=14% Similarity=0.053 Sum_probs=39.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~ 55 (388)
...+||+|||+|.+|+.+|..|.+ .|.+|+++|+++..||.+.
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~--~GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSV--NGKKVLHMDRNPYYGGESA 44 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhh--CCCEEEEecCCCCcCcccc
Confidence 345899999999999999999999 9999999999999998864
No 273
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.29 E-value=0.0011 Score=63.67 Aligned_cols=43 Identities=21% Similarity=0.279 Sum_probs=32.8
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
..++.+. ...++++..+ +++|.+|.. .+++.+.+|.||+|||.
T Consensus 108 ~~nl~i~-~~~V~~l~~e-~~~v~GV~~--------~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 108 HPNLTII-QGEVTDLIVE-NGKVKGVVT--------KDGEEIEADAVVLATGT 150 (392)
T ss_dssp STTEEEE-ES-EEEEEEC-TTEEEEEEE--------TTSEEEEECEEEE-TTT
T ss_pred CCCeEEE-EcccceEEec-CCeEEEEEe--------CCCCEEecCEEEEeccc
Confidence 4678885 5788888764 488888864 56679999999999998
No 274
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.27 E-value=0.00093 Score=66.27 Aligned_cols=34 Identities=32% Similarity=0.534 Sum_probs=27.2
Q ss_pred cEEEECccHHHHHHHHHHHhhCCC-CcEEEEcCCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQ-STVDIYEKLP 48 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g-~~v~lie~~~ 48 (388)
+|+|||||+||..+|..|++..+. .+|+|+|+..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~ 35 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD 35 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC
Confidence 699999999999999999996443 8999999874
No 275
>PRK07121 hypothetical protein; Validated
Probab=97.27 E-value=0.00035 Score=70.18 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=36.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
..||||||+|.||++||..+++ .|.+|+|+|+.+..||..
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae--~G~~VillEK~~~~gG~s 59 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAA--AGARVLVLERAAGAGGAT 59 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCcc
Confidence 5799999999999999999999 899999999988766543
No 276
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.25 E-value=0.00043 Score=69.73 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=35.0
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
...+||+|||||.+|+++|..|++ .|++|+|+|+++..+|
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~--rGl~V~LvEk~d~~~G 43 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAG--RGLSVLLCEQDDLASA 43 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCC
Confidence 345899999999999999999999 8999999999865433
No 277
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.25 E-value=0.00037 Score=72.05 Aligned_cols=36 Identities=39% Similarity=0.459 Sum_probs=32.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCC-CCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLP-QSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~-g~~v~lie~~~~ 49 (388)
...+|+||||||+||.+|..|++ . |++|+|||+.+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar--~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSA--FPDITTRIVERKPG 67 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhc--CCCCcEEEEEcCCC
Confidence 46799999999999999999998 6 999999998754
No 278
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.25 E-value=0.00038 Score=67.36 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=31.4
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
+||+|||||.+|+++|..|.+ .|.+|+|+|+.+.
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~--~g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAK--HGKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCC
Confidence 489999999999999999999 8999999999754
No 279
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.23 E-value=0.0032 Score=58.30 Aligned_cols=47 Identities=9% Similarity=0.037 Sum_probs=33.4
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.|+++++++.++++..++ +.+ .+.+ ++++.++.+|.||.|+|....
T Consensus 103 ~~gv~~~~~~~v~~~~~~~-~~~-~~~~-------~~~~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 103 EAGAELRLGTTVLDVEIHD-DRV-VVIV-------RGGEGTVTAKIVIGADGSRSI 149 (295)
T ss_pred HcCCEEEeCcEEeeEEEeC-CEE-EEEE-------cCccEEEEeCEEEECCCcchH
Confidence 5689999999999887644 322 2222 234467999999999998653
No 280
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.22 E-value=0.00046 Score=70.88 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=33.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
...||+|||+|.||++||..+++ .|.+|+|+|+....
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~--~G~~V~lveK~~~~ 47 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAE--AGLKTACITKVFPT 47 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHH--cCCcEEEEEccCCC
Confidence 35799999999999999999999 89999999997543
No 281
>PRK07236 hypothetical protein; Provisional
Probab=97.21 E-value=0.0065 Score=59.01 Aligned_cols=134 Identities=11% Similarity=0.069 Sum_probs=71.5
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccccc------CCHHHHHHHhcCCC
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVA------FTIKEFREMTKLPH 225 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~------~~~~el~~l~~~~~ 225 (388)
..+|+|||||.+|+.+|..|+ +.|. +|+++.|.+..... +.+.-++.+..+.-
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~--------------------~~G~-~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~ 64 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLR--------------------RAGW-DVDVFERSPTELDGRGAGIVLQPELLRALAEAGV 64 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHH--------------------hCCC-CEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCC
Confidence 578999999999999999886 3454 69999988643211 22322222222110
Q ss_pred c----------eEEecccccccchhhhcc-ccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeE
Q psy4525 226 V----------QTVFRNEQLCGVHEASAT-LARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITG 294 (388)
Q Consensus 226 ~----------~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~ 294 (388)
. ...+....-..+...... ....+..+...+...+ .++.+++++.++.+..++ +.+ .
T Consensus 65 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~----------~~~~i~~~~~v~~i~~~~-~~v-~ 132 (386)
T PRK07236 65 ALPADIGVPSRERIYLDRDGRVVQRRPMPQTQTSWNVLYRALRAAF----------PAERYHLGETLVGFEQDG-DRV-T 132 (386)
T ss_pred CcccccccCccceEEEeCCCCEeeccCCCccccCHHHHHHHHHHhC----------CCcEEEcCCEEEEEEecC-CeE-E
Confidence 0 000100000000000000 0011233334443221 245789999999997643 333 2
Q ss_pred EEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 295 INFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 295 v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.+ .+++++.||+||.|-|.+...
T Consensus 133 v~~--------~~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 133 ARF--------ADGRRETADLLVGADGGRSTV 156 (386)
T ss_pred EEE--------CCCCEEEeCEEEECCCCCchH
Confidence 443 334579999999999976544
No 282
>PLN03000 amine oxidase
Probab=97.20 E-value=0.00048 Score=72.25 Aligned_cols=41 Identities=34% Similarity=0.448 Sum_probs=38.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
..++|+|||||++|+.+|..|.+ .|++|+|+|+.+.+||.+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~--~G~~V~VlE~~~riGGRi 223 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMR--FGFKVTVLEGRKRPGGRV 223 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHH--CCCcEEEEEccCcCCCCc
Confidence 45899999999999999999999 899999999999999976
No 283
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.20 E-value=0.00054 Score=68.97 Aligned_cols=40 Identities=20% Similarity=0.177 Sum_probs=35.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
...+||+|||||.+|+++|..|++ .|.+|+|+|+.+..+|
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~--rG~~V~LlEk~d~~~G 43 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAG--RGLKVLLCEKDDLAQG 43 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHh--CCCcEEEEECCCCCCC
Confidence 345899999999999999999999 8999999999965443
No 284
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.19 E-value=0.0004 Score=68.71 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=29.7
Q ss_pred CcEEEECccHHHHHHHHHHHhhC--CCCcEEEEcCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLL--PQSTVDIYEKL 47 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~--~g~~v~lie~~ 47 (388)
+||+||||||+|+++|..|++.. .|++|+|||+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~ 36 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV 36 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCC
Confidence 58999999999999999998721 48999999994
No 285
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.19 E-value=0.00051 Score=66.15 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=31.4
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
+||+|||||.+|+++|..|++ .|.+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~--~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAAR--RGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCC
Confidence 489999999999999999999 8999999999754
No 286
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.19 E-value=0.00049 Score=70.56 Aligned_cols=37 Identities=30% Similarity=0.490 Sum_probs=33.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
+.||+|||+|.||++||..+++ .|.+|+|+|+.+..+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~--~G~~V~lieK~~~~~ 39 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAE--AGVHVDLFSLVPVKR 39 (589)
T ss_pred CccEEEECchHHHHHHHHHHHH--cCCcEEEEEccCCCC
Confidence 4599999999999999999999 899999999876543
No 287
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.18 E-value=0.00052 Score=66.48 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=34.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
..+++|+|||||.+|+++|.+|.+ .|.+|+++|+....+
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~--~G~~V~vie~~~~~~ 40 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAE--RGADVTVLEAGEAGG 40 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHH--cCCEEEEEecCccCC
Confidence 346899999999999999999999 899999999886543
No 288
>KOG2820|consensus
Probab=97.18 E-value=0.0024 Score=59.05 Aligned_cols=38 Identities=29% Similarity=0.490 Sum_probs=33.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
....+++|||||.-|+++|..|++ .|.++.++|+.+.+
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK--~g~killLeqf~~p 42 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAK--RGDKILLLEQFPLP 42 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHh--cCCeEEEEeccCCC
Confidence 345799999999999999999999 89999999987543
No 289
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.17 E-value=0.0027 Score=64.14 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=33.3
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCV 327 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~ 327 (388)
..++.++++..++.+..++ + ...+. ..++..+.+|.+|+|||..|..+
T Consensus 279 ~~gv~i~~~~~V~~I~~~~-~-~~~v~--------~~~g~~i~~d~lIlAtGa~~~~~ 326 (515)
T TIGR03140 279 QYPIDLMENQRAKKIETED-G-LIVVT--------LESGEVLKAKSVIVATGARWRKL 326 (515)
T ss_pred HhCCeEEcCCEEEEEEecC-C-eEEEE--------ECCCCEEEeCEEEECCCCCcCCC
Confidence 4578898888888886532 2 12232 23345799999999999987543
No 290
>KOG2495|consensus
Probab=97.17 E-value=0.00053 Score=65.12 Aligned_cols=90 Identities=16% Similarity=0.177 Sum_probs=65.7
Q ss_pred CcEEEECccHHHHHHHHHHHhhC------------CCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCc
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLL------------PQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRV 81 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~------------~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i 81 (388)
-.+|||||||.|+.+|..|+... ..++||++|..+.+- +. -.+.+.++.++++.+.++
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL--------~m--Fdkrl~~yae~~f~~~~I 288 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL--------NM--FDKRLVEYAENQFVRDGI 288 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH--------HH--HHHHHHHHHHHHhhhccc
Confidence 47999999999999999998642 235899999875431 11 245677778888899999
Q ss_pred EEEceEEEEE----Eeeec--cc---ccccCEEEEeeCCCC
Q psy4525 82 NFYGNICLGQ----DISLG--DL---TNAYHAVVLTYGADN 113 (388)
Q Consensus 82 ~~~~~~~v~~----~~~~~--~~---~~~yd~lvlAtG~~~ 113 (388)
++..++.|.. ++..+ ++ +..|--||.|||..+
T Consensus 289 ~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~ 329 (491)
T KOG2495|consen 289 DLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGP 329 (491)
T ss_pred eeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCC
Confidence 9998877632 22222 22 237999999999877
No 291
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.16 E-value=0.0023 Score=64.78 Aligned_cols=48 Identities=6% Similarity=0.137 Sum_probs=33.2
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCV 327 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~ 327 (388)
+.++.+++++.+..+...+ ....+.+ .++.++.+|.||+|||.+|..+
T Consensus 278 ~~gv~i~~~~~V~~I~~~~--~~~~V~~--------~~g~~i~a~~vViAtG~~~r~~ 325 (517)
T PRK15317 278 EYDVDIMNLQRASKLEPAA--GLIEVEL--------ANGAVLKAKTVILATGARWRNM 325 (517)
T ss_pred HCCCEEEcCCEEEEEEecC--CeEEEEE--------CCCCEEEcCEEEECCCCCcCCC
Confidence 4578888888888887532 2222322 3345799999999999987653
No 292
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.16 E-value=0.0005 Score=68.84 Aligned_cols=40 Identities=20% Similarity=0.369 Sum_probs=34.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
...+||+|||||..|+++|..|.+..++.+|+|+||.+.+
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~ 42 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV 42 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch
Confidence 3457999999999999999999986568999999998654
No 293
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.16 E-value=0.003 Score=60.03 Aligned_cols=65 Identities=14% Similarity=0.170 Sum_probs=41.1
Q ss_pred hhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 249 RKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+..+.+.|...+. +.++++++++.++.+..+.++....+.. . .++..+++.||+||-|-|.+...
T Consensus 110 r~~l~~~L~~~~~--------~~gv~i~~~~~v~~~~~d~~~~~~~~~~--~---~~g~~~~i~adlvVgADG~~S~v 174 (356)
T PF01494_consen 110 RPELDRALREEAE--------ERGVDIRFGTRVVSIEQDDDGVTVVVRD--G---EDGEEETIEADLVVGADGAHSKV 174 (356)
T ss_dssp HHHHHHHHHHHHH--------HHTEEEEESEEEEEEEEETTEEEEEEEE--T---CTCEEEEEEESEEEE-SGTT-HH
T ss_pred HHHHHHhhhhhhh--------hhhhhheeeeeccccccccccccccccc--c---cCCceeEEEEeeeecccCcccch
Confidence 4455555555432 5679999999999887654332222221 1 13455689999999999998754
No 294
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.15 E-value=0.00052 Score=69.29 Aligned_cols=39 Identities=23% Similarity=0.215 Sum_probs=35.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
..||||||+| ||++||..+++ .|.+|+|+|+.+..||..
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~--~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAR--EGLSVALVEATDKFGGTT 45 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHH--CCCcEEEEecCCCCCcce
Confidence 5799999999 99999999999 899999999988766544
No 295
>PLN02976 amine oxidase
Probab=97.15 E-value=0.00063 Score=74.16 Aligned_cols=43 Identities=26% Similarity=0.373 Sum_probs=39.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~ 55 (388)
...++|+|||||++|+++|..|.+ .|++|+|||+.+.+||.+.
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~--~G~~V~VlEa~~~vGGri~ 733 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQR--QGFSVTVLEARSRIGGRVY 733 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHH--CCCcEEEEeeccCCCCcee
Confidence 446899999999999999999999 8999999999999999873
No 296
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.15 E-value=0.0039 Score=60.85 Aligned_cols=136 Identities=12% Similarity=0.148 Sum_probs=80.7
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccccc------CCHHHHHHHhcCCCc
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVA------FTIKEFREMTKLPHV 226 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~------~~~~el~~l~~~~~~ 226 (388)
-.|+|||+|++|.-+|..|+ +.| -+|.++.|....-.+ .++..+.++...+..
T Consensus 4 ~DVvIVGaGPAGs~aA~~la--------------------~~G-~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~ 62 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLA--------------------KAG-LDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDE 62 (396)
T ss_pred eeEEEECCchHHHHHHHHHH--------------------HcC-CeEEEEecCCCCCCCccccceechhhHHHhCCCcch
Confidence 36999999999999999876 455 479999997665443 334444444433321
Q ss_pred --eEEecccccc------cchhh-hccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEE
Q psy4525 227 --QTVFRNEQLC------GVHEA-SATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINF 297 (388)
Q Consensus 227 --~~~~~~~~~~------~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~ 297 (388)
........+. .+... .....-.+.++-+.|...+ .+.|.+++..+.++.+..++++.+..+.
T Consensus 63 ~i~~~v~~~~~~~~~~~~~~~~~~~~~y~v~R~~fd~~La~~A--------~~aGae~~~~~~~~~~~~~~~~~~~~~~- 133 (396)
T COG0644 63 EIERKVTGARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERA--------EEAGAELYPGTRVTGVIREDDGVVVGVR- 133 (396)
T ss_pred hhheeeeeeEEEecCCceEEecCCCceEEEEhHHhhHHHHHHH--------HHcCCEEEeceEEEEEEEeCCcEEEEEE-
Confidence 1111111110 00000 0000001344444444332 2689999999999999887656555543
Q ss_pred ccCccccCCceeEEecceEEEccccCCcc
Q psy4525 298 ANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 298 ~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.++ .++.++.||.|.|.+...
T Consensus 134 -------~~~-~e~~a~~vI~AdG~~s~l 154 (396)
T COG0644 134 -------AGD-DEVRAKVVIDADGVNSAL 154 (396)
T ss_pred -------cCC-EEEEcCEEEECCCcchHH
Confidence 222 689999999999987654
No 297
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.14 E-value=0.00051 Score=68.63 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=32.5
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
.||+|||||.+|+++|..|++..++.+|+|+|+.+.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~ 36 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDA 36 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 489999999999999999999656999999999754
No 298
>PRK07045 putative monooxygenase; Reviewed
Probab=97.14 E-value=0.008 Score=58.37 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=36.7
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
..++++++++.++.+..++++.+..+.+ .+++++.+|.||.|.|.+..
T Consensus 119 ~~gv~i~~~~~v~~i~~~~~~~~~~v~~--------~~g~~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 119 LPNVRLRFETSIERIERDADGTVTSVTL--------SDGERVAPTVLVGADGARSM 166 (388)
T ss_pred CCCeeEEeCCEEEEEEECCCCcEEEEEe--------CCCCEEECCEEEECCCCChH
Confidence 3579999999999998765555555654 33457999999999998753
No 299
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.14 E-value=0.00068 Score=69.05 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=35.3
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC--CCCCc
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP--VPFGL 53 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~--~~gg~ 53 (388)
..||+|||+|.|||+||..+++ .|.+|+|+|+.+ ..||.
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~--~G~~VivlEK~~~~~~GG~ 44 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELAD--AGKRVLLLDQENEANLGGQ 44 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCCCc
Confidence 4799999999999999999999 899999999998 56664
No 300
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.12 E-value=0.0006 Score=66.41 Aligned_cols=34 Identities=32% Similarity=0.419 Sum_probs=31.2
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
.+|+|||||++|+.+|..|++ .|.+|+|||+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr--~G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQ--AGVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHh--CCCcEEEEecccc
Confidence 379999999999999999999 8999999997655
No 301
>KOG0405|consensus
Probab=97.12 E-value=0.0013 Score=60.95 Aligned_cols=91 Identities=12% Similarity=0.074 Sum_probs=66.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
..+++++|||||+.++..|--++. .|.++.+|=|.+.+ -....+.+.+...+.++..|++++.++.+.
T Consensus 187 e~Pkr~vvvGaGYIavE~Agi~~g--LgsethlfiR~~kv----------LR~FD~~i~~~v~~~~~~~ginvh~~s~~~ 254 (478)
T KOG0405|consen 187 EQPKRVVVVGAGYIAVEFAGIFAG--LGSETHLFIRQEKV----------LRGFDEMISDLVTEHLEGRGINVHKNSSVT 254 (478)
T ss_pred hcCceEEEEccceEEEEhhhHHhh--cCCeeEEEEecchh----------hcchhHHHHHHHHHHhhhcceeecccccce
Confidence 567999999999999999999999 89999988777543 111234456667777888899999887764
Q ss_pred EEeee----------cccccccCEEEEeeCCCC
Q psy4525 91 QDISL----------GDLTNAYHAVVLTYGADN 113 (388)
Q Consensus 91 ~~~~~----------~~~~~~yd~lvlAtG~~~ 113 (388)
..+.. .+....+|.|+.|+|..|
T Consensus 255 ~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~P 287 (478)
T KOG0405|consen 255 KVIKTDDGLELVITSHGTIEDVDTLLWAIGRKP 287 (478)
T ss_pred eeeecCCCceEEEEeccccccccEEEEEecCCC
Confidence 33222 122236899999999554
No 302
>PRK06996 hypothetical protein; Provisional
Probab=97.07 E-value=0.00071 Score=66.05 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=31.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCC----CcEEEEcCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQ----STVDIYEKLP 48 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g----~~v~lie~~~ 48 (388)
...++|+||||||+|+++|..|++ .| ++|+|+|+.+
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~--~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLAR--RSATRALSIALIDARE 48 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhc--CCCcCCceEEEecCCC
Confidence 345799999999999999999998 65 5799999864
No 303
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.06 E-value=0.00073 Score=68.64 Aligned_cols=38 Identities=29% Similarity=0.363 Sum_probs=34.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
..||+|||+|.||+.||..+++ .|.+|+|+|+.+..+|
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae--~G~~VilleK~~~~~g 53 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARR--AGRRVLVVTKAALDDG 53 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHH--cCCeEEEEEccCCCCC
Confidence 5799999999999999999999 8999999999876543
No 304
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.05 E-value=0.0015 Score=63.42 Aligned_cols=33 Identities=33% Similarity=0.469 Sum_probs=29.8
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
+|+|||+|.|||++|..|.+ . ++|+|+.|.+..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~--~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAP--S-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCC--C-CcEEEEeCCCCC
Confidence 89999999999999999998 4 999999987654
No 305
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.04 E-value=0.0008 Score=68.89 Aligned_cols=40 Identities=25% Similarity=0.167 Sum_probs=36.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCc
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGL 53 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~ 53 (388)
...||||||+|.||++||..+++ .|.+|+|+|+.+..||.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae--~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAA--RGLDTLVVEKSAHFGGS 49 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHH--CCCcEEEEEcCCCCCch
Confidence 45799999999999999999999 89999999999877764
No 306
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.02 E-value=0.0023 Score=63.07 Aligned_cols=140 Identities=26% Similarity=0.358 Sum_probs=74.7
Q ss_pred CCcEEEECccH-HHHHHHHHHHhhCCCC----cEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCc-----E
Q psy4525 13 KPNVCIVGSGP-AGFYCAQQILKLLPQS----TVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRV-----N 82 (388)
Q Consensus 13 ~~~vvIIGaG~-aGl~aA~~l~~~~~g~----~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i-----~ 82 (388)
..+.+++|.++ +++..|..+.. .+. .+-+.+.-|.+.++.++|. ....++...+.+.. +
T Consensus 5 ~~~e~~~~~~~~~a~~~a~rCl~--C~~~C~~~cp~~~~IP~~~~lv~~g~---------~~~a~~~i~~tn~~p~~~gR 73 (457)
T COG0493 5 DFREAVVGSGPEAAIYEAARCLD--CGDPCITGCPVHNDIPEPIGLVREGV---------DHEAIKLIHKTNNLPAITGR 73 (457)
T ss_pred cceeeecCCCHHHHHHHHHHHHc--CCCccccCCcCCCcCCCHHHHHhcCC---------cHHHHHHHHHhCCCccccCc
Confidence 57899999999 88888888877 332 1222222233333333333 11112222222221 1
Q ss_pred EE--ceEEEEEEeee-cccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEc
Q psy4525 83 FY--GNICLGQDISL-GDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILG 159 (388)
Q Consensus 83 ~~--~~~~v~~~~~~-~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG 159 (388)
+. .+...+..+.. .+....|+.|..+.|....+...+++.. .....+++|+|||
T Consensus 74 vcp~~~~ceg~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~~-----------------------~~~~tg~~VaviG 130 (457)
T COG0493 74 VCPLGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGEL-----------------------PGSRTGKKVAVIG 130 (457)
T ss_pred cCCCCCceeeeeeeccCCCchhhhhHHHHHhhHHHHhCCCCCCC-----------------------CCCCCCCEEEEEC
Confidence 11 12223333332 2333467777766665442222232221 1123469999999
Q ss_pred CChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 160 QGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 160 gG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
+|+.|+.+|..|+ +.+ ..||++.|...
T Consensus 131 aGPAGl~~a~~L~--------------------~~G-~~Vtv~e~~~~ 157 (457)
T COG0493 131 AGPAGLAAADDLS--------------------RAG-HDVTVFERVAL 157 (457)
T ss_pred CCchHhhhHHHHH--------------------hCC-CeEEEeCCcCC
Confidence 9999999999887 234 46999877653
No 307
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.02 E-value=0.0093 Score=59.00 Aligned_cols=125 Identities=14% Similarity=0.155 Sum_probs=68.2
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccc----c-------cCCHHHHHHH
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQ----V-------AFTIKEFREM 220 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~----~-------~~~~~el~~l 220 (388)
..+|+|||+|.+|+=+|..|. +.+...+.++++++.+- . ..++.....+
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~--------------------~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~ 67 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALK--------------------QAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGF 67 (443)
T ss_pred cccEEEECCCHHHHHHHHHHH--------------------HcCCCcEEEEEccCCcCCcchhccCCceEECCchheecc
Confidence 468999999999999999765 45555588888875221 1 1112221111
Q ss_pred hcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccC
Q psy4525 221 TKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQ 300 (388)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~ 300 (388)
...|.. -...+...+.++..+...+..+ .....+.++..+..+..+.++..-.+...++
T Consensus 68 ~~~p~~-----------~~~~~~~~~~~~~y~~~~~~~y----------~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~ 126 (443)
T COG2072 68 PFLPFR-----------WDEAFAPFAEIKDYIKDYLEKY----------GLRFQIRFNTRVEVADWDEDTKRWTVTTSDG 126 (443)
T ss_pred CCCccC-----------CcccCCCcccHHHHHHHHHHHc----------CceeEEEcccceEEEEecCCCCeEEEEEcCC
Confidence 111110 0112222233444454555443 2345555566666566655555545544322
Q ss_pred ccccCCceeEEecceEEEccccC
Q psy4525 301 QALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 301 ~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
+..+ +.||.||+|||+-
T Consensus 127 -----~~~~-~~a~~vV~ATG~~ 143 (443)
T COG2072 127 -----GTGE-LTADFVVVATGHL 143 (443)
T ss_pred -----Ceee-EecCEEEEeecCC
Confidence 1122 7899999999985
No 308
>PRK12839 hypothetical protein; Provisional
Probab=97.01 E-value=0.0011 Score=67.64 Aligned_cols=41 Identities=27% Similarity=0.248 Sum_probs=37.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
...+|+|||+|.+|+++|..+.+ .|.+|+|+|+...+||..
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~--~g~~v~~iek~~~~gg~~ 47 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAY--GGAKVLVVEKASTCGGAT 47 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCccc
Confidence 35799999999999999999999 899999999998888765
No 309
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.00 E-value=0.00096 Score=67.99 Aligned_cols=40 Identities=28% Similarity=0.213 Sum_probs=36.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
..||+|||+|.+|+++|..+++ .|.+|+|+|+.+..||..
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~--~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAAD--SGLEPLIVEKQDKVGGST 45 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCcee
Confidence 5799999999999999999999 899999999998777764
No 310
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.00 E-value=0.00085 Score=68.65 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=31.8
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
||+|||+|.||++||..+++ .|.+|+|+|+.+..+
T Consensus 1 DVlVVG~G~AGl~AA~~aae--~G~~V~lleK~~~~~ 35 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAK--AGLNTAVISKVYPTR 35 (566)
T ss_pred CEEEECccHHHHHHHHHHHH--CCCcEEEEeccCCCC
Confidence 69999999999999999999 899999999976543
No 311
>PRK05868 hypothetical protein; Validated
Probab=97.00 E-value=0.012 Score=56.79 Aligned_cols=47 Identities=13% Similarity=0.178 Sum_probs=33.9
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
..+++++++.+++.+..++ +.+ .+.+ .+++++.+|+||-|-|.+...
T Consensus 116 ~~~v~i~~~~~v~~i~~~~-~~v-~v~~--------~dg~~~~adlvIgADG~~S~v 162 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDG-DSV-RVTF--------ERAAAREFDLVIGADGLHSNV 162 (372)
T ss_pred cCCcEEEeCCEEEEEEecC-CeE-EEEE--------CCCCeEEeCEEEECCCCCchH
Confidence 4689999999999987543 322 3444 334578999999999987654
No 312
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.00 E-value=0.00089 Score=67.39 Aligned_cols=39 Identities=28% Similarity=0.239 Sum_probs=35.8
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
+||+|||+||+|+.+|..|.+ .|++|++||+....|+.|
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~--~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVD--AGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHH--CCCeEEEEeccCccCCCc
Confidence 589999999999999999999 899999999998887655
No 313
>PLN02463 lycopene beta cyclase
Probab=96.99 E-value=0.0072 Score=59.79 Aligned_cols=132 Identities=12% Similarity=0.177 Sum_probs=69.1
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccccc--CC--HHHHHHH------h-
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVA--FT--IKEFREM------T- 221 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~--~~--~~el~~l------~- 221 (388)
-+|+|||||.+|+-+|..|+ +.| .+|.++.+.+....+ +. ..++.++ .
T Consensus 29 ~DVvIVGaGpAGLalA~~La--------------------~~G-l~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~ 87 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVS--------------------EAG-LSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDT 87 (447)
T ss_pred ceEEEECCCHHHHHHHHHHH--------------------HCC-CeEEEeccCccchhccccchHHHHHHHCCcHHHHHh
Confidence 37999999999999999776 244 369999886532221 11 1222211 0
Q ss_pred cCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCc
Q psy4525 222 KLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQ 301 (388)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~ 301 (388)
.-+.....+..............+ .+..+.+.+.+... +.|++++ ...++++..++ +. ..+.
T Consensus 88 ~w~~~~v~~~~~~~~~~~~~y~~V--~R~~L~~~Ll~~~~--------~~GV~~~-~~~V~~I~~~~-~~-~~V~----- 149 (447)
T PLN02463 88 TWPGAVVYIDDGKKKDLDRPYGRV--NRKKLKSKMLERCI--------ANGVQFH-QAKVKKVVHEE-SK-SLVV----- 149 (447)
T ss_pred hCCCcEEEEeCCCCccccCcceeE--EHHHHHHHHHHHHh--------hcCCEEE-eeEEEEEEEcC-Ce-EEEE-----
Confidence 111111111111100000000101 13444444444321 4577775 45677776543 22 2333
Q ss_pred cccCCceeEEecceEEEccccCCcc
Q psy4525 302 ALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 302 ~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.++.++.||.||.|+|+.+..
T Consensus 150 ---~~dG~~i~A~lVI~AdG~~s~l 171 (447)
T PLN02463 150 ---CDDGVKIQASLVLDATGFSRCL 171 (447)
T ss_pred ---ECCCCEEEcCEEEECcCCCcCc
Confidence 3445689999999999998653
No 314
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=96.98 E-value=0.00086 Score=65.77 Aligned_cols=34 Identities=26% Similarity=0.471 Sum_probs=31.3
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
+|+|||||.+|+++|.+|++ .|.+|+|+|+...+
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~--~g~~V~vle~~~~~ 35 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQ--AGHEVTVIDRQPGP 35 (416)
T ss_pred EEEEECCcHHHHHHHHHHHH--CCCEEEEEeCCCch
Confidence 79999999999999999999 89999999997543
No 315
>PRK06175 L-aspartate oxidase; Provisional
Probab=96.98 E-value=0.001 Score=65.72 Aligned_cols=37 Identities=30% Similarity=0.374 Sum_probs=32.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
..||+|||+|.||++||..+ . .|.+|+|+|+.+..+|
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a-~--~G~~V~lleK~~~~gg 40 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNL-R--KDLKILMVSKGKLNEC 40 (433)
T ss_pred cccEEEECchHHHHHHHHHh-c--cCCCEEEEecCCCCCC
Confidence 46999999999999999997 4 5899999999876554
No 316
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.98 E-value=0.0012 Score=67.75 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=32.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..||+|||+|.||+.||..+++ .|.+|+|+|+...
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~--~G~~V~vleK~~~ 46 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLAR--AGLSVAVLSKVFP 46 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHH--CCCcEEEEeccCC
Confidence 4799999999999999999999 8999999999754
No 317
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.97 E-value=0.00093 Score=69.65 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=32.2
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
.+|+|||||.+|+++|.+|++ .|.+|+|+|+...+
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~--~G~~V~VlE~~~~~ 295 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR--RGWQVTLYEADEAP 295 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH--CCCeEEEEecCCCc
Confidence 599999999999999999999 89999999997543
No 318
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.96 E-value=0.00098 Score=68.83 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=33.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
..||+|||+|.||+.||..+++ .|.+|+|+|+.+..+
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae--~G~~V~lieK~~~~~ 44 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARE--RGLRVAVVCKSLFGK 44 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHH--CCCCEEEEeccCCCC
Confidence 4799999999999999999999 899999999986543
No 319
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.96 E-value=0.001 Score=67.91 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=33.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
..||+|||+|.||++||..+++ .|.+|+|+|+.+..+
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae--~G~~V~lveK~~~~~ 41 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIAS--AGFKVAVISKVFPTR 41 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHH--CCCcEEEEEccCCCC
Confidence 4699999999999999999999 899999999986543
No 320
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=96.95 E-value=0.001 Score=68.58 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=33.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
..||+|||+|.||+.||..+++ .|.+|+|+|+.+..+|
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~--~G~~V~lveK~~~~~g 66 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVE--LGYKTACISKLFPTRS 66 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHH--cCCcEEEEeccCCCCC
Confidence 4699999999999999999999 8999999999865443
No 321
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=96.95 E-value=0.0013 Score=64.33 Aligned_cols=38 Identities=29% Similarity=0.249 Sum_probs=32.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLPV 49 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~~ 49 (388)
...+||+|||||.+|+++|.+|.+. .|. +|+|+|+...
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~-~g~~~V~vle~~~~ 66 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKE-HGITNVAVLEKGWL 66 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHh-cCCCeEEEEEcccc
Confidence 3568999999999999999999982 274 8999999753
No 322
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=96.95 E-value=0.001 Score=66.32 Aligned_cols=37 Identities=32% Similarity=0.476 Sum_probs=32.3
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..||+|||||.+|+++|.+|++..+|.+|+|+|+...
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 4799999999999999999998334899999998743
No 323
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.95 E-value=0.001 Score=67.84 Aligned_cols=40 Identities=28% Similarity=0.231 Sum_probs=36.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
...||||||+| +|++||..+++ .|.+|+|+|+.+.+||..
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~--~G~~v~v~Ek~~~~GG~~ 54 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHE--LGLSVLIVEKSSYVGGST 54 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHH--CCCcEEEEecCCCCcCcc
Confidence 36899999999 89999999999 999999999998888865
No 324
>KOG2614|consensus
Probab=96.94 E-value=0.0012 Score=62.78 Aligned_cols=36 Identities=31% Similarity=0.441 Sum_probs=32.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
..+|+|||||.+|+++|..|.+ .|++|+|+|+...+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r--~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHR--KGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHH--cCCeEEEEeecccc
Confidence 4689999999999999999999 99999999986543
No 325
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.94 E-value=0.0013 Score=67.54 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=33.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
...||+|||+|.||++||..+++ .|.+|+|+|+....+
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~--~G~~V~lleK~~~~~ 43 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQ--SGQSCALLSKVFPTR 43 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHH--cCCcEEEEEccCCCC
Confidence 35799999999999999999999 899999999986543
No 326
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=96.92 E-value=0.0013 Score=66.96 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=32.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
.+||+|||||..|+++|..|++ .|.+|+|+|+.+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~--rG~~V~LlEk~d~ 40 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCAL--RGLRCILVERHDI 40 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHH--cCCeEEEEECCCC
Confidence 5899999999999999999999 8999999999754
No 327
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.92 E-value=0.0044 Score=61.50 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=32.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..++|+|||+|..|+.+|..+.+ .|.+|+++++.+.
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~--~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALR--LGAEVHCLYRRTR 306 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCEEEEEeecCc
Confidence 45899999999999999999999 8999999998743
No 328
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=96.91 E-value=0.0012 Score=65.79 Aligned_cols=39 Identities=23% Similarity=0.373 Sum_probs=34.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
..+||||||||.+|+++|..|++..++.+|+|+||.+.+
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~ 43 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSP 43 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCc
Confidence 457999999999999999999996668999999994444
No 329
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=96.90 E-value=0.0012 Score=68.18 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=33.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
..||+|||+|.||++||..+++ .|.+|+|+|+....+
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae--~G~~VilveK~~~~~ 86 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSE--HGFNTACITKLFPTR 86 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHh--cCCcEEEEEcCCCCC
Confidence 4699999999999999999999 899999999986544
No 330
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.89 E-value=0.018 Score=56.46 Aligned_cols=49 Identities=6% Similarity=0.053 Sum_probs=34.2
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.++++++++.++++..++++ + .+.+.+ .++..++.||+||.|.|.....
T Consensus 135 ~~v~i~~~~~v~~v~~~~~~-~-~v~~~~-----~~~~~~i~adlvIgADG~~S~v 183 (415)
T PRK07364 135 PNITWLCPAEVVSVEYQQDA-A-TVTLEI-----EGKQQTLQSKLVVAADGARSPI 183 (415)
T ss_pred CCcEEEcCCeeEEEEecCCe-e-EEEEcc-----CCcceEEeeeEEEEeCCCCchh
Confidence 47999999999998764433 2 244421 1233579999999999987654
No 331
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.89 E-value=0.01 Score=54.84 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=32.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
...+|+|||+|.|||.+|..++. .|.+|+++|.+.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~--aG~~V~ildQEg 38 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELAD--AGKRVLILDQEG 38 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHh--cCceEEEEcccc
Confidence 35799999999999999999999 999999999764
No 332
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=96.88 E-value=0.0081 Score=59.22 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=33.1
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQS 324 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p 324 (388)
+.|+++++++.++++..+ ++.+..+. .++.++.||.||.|+|...
T Consensus 120 ~~Gv~i~~~~~V~~i~~~-~g~v~~v~---------~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 120 EAGAQLITGIRVDNLVQR-DGKVVGVE---------ADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HCCCEEECCCEEEEEEEe-CCEEEEEE---------cCCcEEECCEEEEEeCCCH
Confidence 568999999999988754 34544432 2234799999999999864
No 333
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=96.88 E-value=0.0015 Score=65.33 Aligned_cols=38 Identities=21% Similarity=0.196 Sum_probs=32.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..+||||||||..|+++|..|++..++.+|+|+|+.+.
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~ 81 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD 81 (497)
T ss_pred CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence 45899999999999999999998434479999999864
No 334
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.88 E-value=0.0013 Score=67.99 Aligned_cols=36 Identities=28% Similarity=0.339 Sum_probs=32.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
..||+|||+|.|||+||..+++ .|.+|+|+|+...+
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae--~G~~VilieK~~~~ 70 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGE--LGYNVKVFCYQDSP 70 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHH--cCCcEEEEecCCCC
Confidence 4699999999999999999999 89999999986544
No 335
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.86 E-value=0.0012 Score=67.54 Aligned_cols=38 Identities=32% Similarity=0.304 Sum_probs=33.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCC---CcEEEEcCCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQ---STVDIYEKLPVPFG 52 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g---~~v~lie~~~~~gg 52 (388)
..||+|||+|.||++||..+++ .| .+|+|+|+.+..++
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~--~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAE--RSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHH--hCCCCCcEEEEEcccCCCC
Confidence 4699999999999999999998 77 89999999865543
No 336
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.86 E-value=0.0051 Score=65.93 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=30.2
Q ss_pred CCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 150 LDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 150 ~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
..+++|+|||||++|+.+|..|+ +.| .+|+++.+.+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~La--------------------r~G-~~VtV~Ek~~~ 573 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLA--------------------RAG-HPVTVFEREEN 573 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHH--------------------HcC-CeEEEEecccc
Confidence 35789999999999999999886 244 47999997754
No 337
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=96.85 E-value=0.0077 Score=58.57 Aligned_cols=47 Identities=9% Similarity=0.104 Sum_probs=34.5
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.|+++++++.++++..++ +.+ .+++ .+++++.+|.||.|.|..++.
T Consensus 125 ~~gv~i~~~~~v~~i~~~~-~~v-~v~~--------~~g~~~~a~~vV~AdG~~S~v 171 (392)
T PRK08773 125 AAGVQLHCPARVVALEQDA-DRV-RLRL--------DDGRRLEAALAIAADGAASTL 171 (392)
T ss_pred hCCCEEEcCCeEEEEEecC-CeE-EEEE--------CCCCEEEeCEEEEecCCCchH
Confidence 4689999999999987643 333 2433 334579999999999998754
No 338
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=96.84 E-value=0.0011 Score=61.81 Aligned_cols=54 Identities=11% Similarity=0.196 Sum_probs=38.7
Q ss_pred ceeEEEEecCcceeeeeC-CCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLN-DNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~-~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
..++++++++.|++|..+ .++++.+|++.+.... .....+.++.||+|.|.-..
T Consensus 205 ~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~--~~~~~~~ak~VIlaAGai~T 259 (296)
T PF00732_consen 205 RPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGG--VQRRIVAAKEVILAAGAIGT 259 (296)
T ss_dssp TTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTS--EEEEEEEEEEEEE-SHHHHH
T ss_pred cCCccEEcCcEEEEEeeeccccceeeeeeeecCCc--ceeeeccceeEEeccCCCCC
Confidence 458999999999999553 4678999988653200 12367789999999996533
No 339
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.83 E-value=0.0069 Score=58.64 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=30.8
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccc
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQ 209 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~ 209 (388)
.++++|||||.+|++.|..|+ +.|. +|+++.+.+.+-
T Consensus 124 ~~svLVIGGGvAGitAAl~La--------------------~~G~-~v~LVEKepsiG 160 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELA--------------------DMGF-KVYLVEKEPSIG 160 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHH--------------------HcCC-eEEEEecCCccc
Confidence 578999999999999999987 3454 599999887653
No 340
>PLN02815 L-aspartate oxidase
Probab=96.83 E-value=0.0017 Score=66.41 Aligned_cols=38 Identities=26% Similarity=0.204 Sum_probs=33.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
...||+|||+|.|||.||..+++ .| +|+|+|+.+..+|
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae--~G-~VvlleK~~~~gg 65 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAE--YG-TVAIITKDEPHES 65 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhh--CC-CEEEEECCCCCCC
Confidence 35799999999999999999999 78 8999999876554
No 341
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=96.83 E-value=0.0016 Score=67.19 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=34.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
..+||+|||||..|+++|..|.+ .|++|+|+|+.+..+|
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~--rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAAT--RGLRVGLVEREDFSSG 108 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHh--CCCEEEEEeccccCCC
Confidence 45899999999999999999999 8999999999854433
No 342
>PRK06834 hypothetical protein; Provisional
Probab=96.83 E-value=0.012 Score=59.09 Aligned_cols=135 Identities=14% Similarity=0.138 Sum_probs=74.0
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccc------cCCHHHHHH-------
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQV------AFTIKEFRE------- 219 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~------~~~~~el~~------- 219 (388)
.+|+|||+|.+|+-+|..|+ +.|. +|+++.|.+.... .+.+.-++-
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La--------------------~~G~-~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~ 62 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELA--------------------LAGV-DVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIA 62 (488)
T ss_pred ceEEEECCCHHHHHHHHHHH--------------------HCCC-cEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcH
Confidence 57999999999999999886 3454 5999998764221 122222211
Q ss_pred --HhcC----CCceEEecccccccchh-hhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCce
Q psy4525 220 --MTKL----PHVQTVFRNEQLCGVHE-ASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAI 292 (388)
Q Consensus 220 --l~~~----~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v 292 (388)
+... ....+....-+...+.. .+..+.-.+..+.+.+.+.+. +.|+++++++.++.+..++++ +
T Consensus 63 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~--------~~gv~i~~~~~v~~v~~~~~~-v 133 (488)
T PRK06834 63 DRFLAQGQVAQVTGFAATRLDISDFPTRHNYGLALWQNHIERILAEWVG--------ELGVPIYRGREVTGFAQDDTG-V 133 (488)
T ss_pred HHHHhcCCccccceeeeEecccccCCCCCCccccccHHHHHHHHHHHHH--------hCCCEEEcCCEEEEEEEcCCe-E
Confidence 1100 00000000000000000 011111224445555554432 458999999999999865432 2
Q ss_pred eEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 293 TGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 293 ~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.+++ .+++++.||.||.|.|.++..
T Consensus 134 -~v~~--------~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 134 -DVEL--------SDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred -EEEE--------CCCCEEEeCEEEEecCCCCCc
Confidence 2332 223579999999999998754
No 343
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.80 E-value=0.0015 Score=67.31 Aligned_cols=35 Identities=29% Similarity=0.299 Sum_probs=32.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCC--CCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLP--QSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~--g~~v~lie~~~~ 49 (388)
..||+|||+|.||+.||..+++ . |.+|+|+|+.+.
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae--~~~G~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKE--WAPDLKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHH--hCCCCeEEEEECCCc
Confidence 4799999999999999999998 6 899999999764
No 344
>PRK06184 hypothetical protein; Provisional
Probab=96.79 E-value=0.0078 Score=60.68 Aligned_cols=50 Identities=18% Similarity=0.131 Sum_probs=35.1
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.|+++++++.++++..++++ +. +.+.+ .++++++.||.||.|.|.+...
T Consensus 121 ~~gv~i~~~~~v~~i~~~~~~-v~-v~~~~-----~~~~~~i~a~~vVgADG~~S~v 170 (502)
T PRK06184 121 ELGHRVEFGCELVGFEQDADG-VT-ARVAG-----PAGEETVRARYLVGADGGRSFV 170 (502)
T ss_pred HCCCEEEeCcEEEEEEEcCCc-EE-EEEEe-----CCCeEEEEeCEEEECCCCchHH
Confidence 458999999999999865433 32 22211 2445789999999999988643
No 345
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.78 E-value=0.013 Score=57.39 Aligned_cols=41 Identities=34% Similarity=0.517 Sum_probs=35.4
Q ss_pred CcEEEECccHHHHHHHHHHHhh--CCCCcEEEEcCCCCCCCce
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKL--LPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~--~~g~~v~lie~~~~~gg~~ 54 (388)
++.=|||+|.|+|+||.+|-+- .+|-+|+|+|+.+.+||.+
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsl 45 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSL 45 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcc
Confidence 5677999999999999999984 3678999999998888765
No 346
>PRK07588 hypothetical protein; Provisional
Probab=96.77 E-value=0.022 Score=55.39 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=33.7
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.++++++++.++++..++ +.+ .+.+ .+++.+.+|+||-|-|.+...
T Consensus 115 ~~v~i~~~~~v~~i~~~~-~~v-~v~~--------~~g~~~~~d~vIgADG~~S~v 160 (391)
T PRK07588 115 GQVETIFDDSIATIDEHR-DGV-RVTF--------ERGTPRDFDLVIGADGLHSHV 160 (391)
T ss_pred cCeEEEeCCEEeEEEECC-CeE-EEEE--------CCCCEEEeCEEEECCCCCccc
Confidence 479999999999998654 333 2433 345568999999999987554
No 347
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.77 E-value=0.0051 Score=58.99 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=30.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCc-EEEEcCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQST-VDIYEKLP 48 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~-v~lie~~~ 48 (388)
.++++|||+|+.|+.+|..|.+ .+.+ |+++++.+
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~--~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVL--LGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeecc
Confidence 4799999999999999999988 7887 99998764
No 348
>PRK12831 putative oxidoreductase; Provisional
Probab=96.76 E-value=0.0098 Score=59.26 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=32.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
...++|+|||+|..|+.+|..+.+ .|.+|+++.+.+
T Consensus 279 ~~gk~VvVIGgG~va~d~A~~l~r--~Ga~Vtlv~r~~ 314 (464)
T PRK12831 279 KVGKKVAVVGGGNVAMDAARTALR--LGAEVHIVYRRS 314 (464)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHH--cCCEEEEEeecC
Confidence 356899999999999999999999 899999998764
No 349
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=96.75 E-value=0.0019 Score=66.15 Aligned_cols=41 Identities=34% Similarity=0.332 Sum_probs=37.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
...||+|||+|++|+++|..+.+ .|.+|+|+|+.+..||..
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~--~g~~v~~iek~~~~gg~~ 51 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAW--HGLKVIVVEKDPVFGGTT 51 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCccc
Confidence 46899999999999999999999 899999999988777754
No 350
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=96.74 E-value=0.0019 Score=66.12 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=33.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
..||+|||+|.||+.||..+++..++.+|+|+|+....++
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS 42 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 3689999999999999999998324689999999866544
No 351
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.74 E-value=0.0018 Score=71.45 Aligned_cols=39 Identities=28% Similarity=0.218 Sum_probs=35.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCc
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGL 53 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~ 53 (388)
..||||||+|.||++||..+++ .|.+|+|+|+.+..||.
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae--~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAAS--CGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEEccCCCCCc
Confidence 4799999999999999999999 89999999999877764
No 352
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.73 E-value=0.0044 Score=66.75 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=29.9
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
.+++|+|||+|+.|+.+|..|+ +.| .+||++.+.+.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~La--------------------r~G-~~VtVfE~~~~ 340 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLA--------------------VEG-FPVTVFEAFHD 340 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHH--------------------HCC-CeEEEEeeCCC
Confidence 4799999999999999999887 244 46999998753
No 353
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=96.73 E-value=0.002 Score=66.09 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=33.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
..||+|||+|.|||.||..+++.-++.+|+|+|+.+..+|
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 4699999999999999999997323589999999865443
No 354
>PRK06753 hypothetical protein; Provisional
Probab=96.70 E-value=0.029 Score=54.08 Aligned_cols=131 Identities=13% Similarity=0.165 Sum_probs=71.1
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccccc-----CCHHHHHHHhc------
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVA-----FTIKEFREMTK------ 222 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~-----~~~~el~~l~~------ 222 (388)
+|+|||||.+|+-+|..|+ +.|. +|++++|++..... ..+.-++.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~--------------------~~g~-~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~ 60 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQ--------------------EQGH-EVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKG 60 (373)
T ss_pred EEEEECCCHHHHHHHHHHH--------------------hCCC-cEEEEecCCcccccccceeeChHHHHHHHhcChHHH
Confidence 6999999999999999876 3454 59999988754211 11221111111
Q ss_pred -----CCCceE-Eecccccccchhh-----hccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCc
Q psy4525 223 -----LPHVQT-VFRNEQLCGVHEA-----SATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGA 291 (388)
Q Consensus 223 -----~~~~~~-~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~ 291 (388)
.+.... .+++... .+... .....-.+..+...|...+ ...++++++.++++..++ +.
T Consensus 61 ~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~i~R~~l~~~L~~~~----------~~~~i~~~~~v~~i~~~~-~~ 128 (373)
T PRK06753 61 IKNAGQILSTMNLLDDKGT-LLNKVKLKSNTLNVTLHRQTLIDIIKSYV----------KEDAIFTGKEVTKIENET-DK 128 (373)
T ss_pred HHhcCCcccceeEEcCCCC-EEeecccccCCccccccHHHHHHHHHHhC----------CCceEEECCEEEEEEecC-Cc
Confidence 011111 1111110 00000 0001112455555555433 234788999999997543 33
Q ss_pred eeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 292 ITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 292 v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+ .+.+ .+++++.+|+||.|-|.+...
T Consensus 129 v-~v~~--------~~g~~~~~~~vigadG~~S~v 154 (373)
T PRK06753 129 V-TIHF--------ADGESEAFDLCIGADGIHSKV 154 (373)
T ss_pred E-EEEE--------CCCCEEecCEEEECCCcchHH
Confidence 3 2332 345678999999999977543
No 355
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.69 E-value=0.0066 Score=59.01 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=38.3
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccc--cCCHHHHHHHhcCCCceEEe
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQV--AFTIKEFREMTKLPHVQTVF 230 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~--~~~~~el~~l~~~~~~~~~~ 230 (388)
.+|+|||+|++|+.+|..|++++. ....|+++.+++.+-. +|+..+-..+.+.|..++-.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~------------------~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~ 63 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPR------------------PSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSA 63 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC------------------CCCceEEeccccccCCCccCCCCCchhhhccccccccc
Confidence 479999999999999999984321 1123888888776543 34444433344555444433
Q ss_pred c
Q psy4525 231 R 231 (388)
Q Consensus 231 ~ 231 (388)
.
T Consensus 64 ~ 64 (474)
T COG4529 64 F 64 (474)
T ss_pred c
Confidence 3
No 356
>PRK08071 L-aspartate oxidase; Provisional
Probab=96.69 E-value=0.0022 Score=64.66 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=32.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
..||+|||+|.||+.||..+++ +.+|+|+|+.+..+|
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~---g~~V~lveK~~~~~g 39 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH---EYNVIIITKKTKRNS 39 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc---CCCEEEEeccCCCCC
Confidence 4699999999999999999964 789999999876544
No 357
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=96.68 E-value=0.0022 Score=66.54 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=32.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
..||+|||+|.||+.||..+++ .|.+|+|+++.+..
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae--~G~~VivleK~~~~ 40 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQ--RGLDTIVLSLVPAK 40 (657)
T ss_pred eccEEEECccHHHHHHHHHHHH--cCCCEEEEeCCCCC
Confidence 4699999999999999999999 89999999987654
No 358
>PRK08275 putative oxidoreductase; Provisional
Probab=96.68 E-value=0.0021 Score=65.62 Aligned_cols=37 Identities=27% Similarity=0.371 Sum_probs=32.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..||+|||+|.||++||..+++..+|.+|+|+|+.+.
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 4799999999999999999997323789999999865
No 359
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.67 E-value=0.027 Score=54.99 Aligned_cols=64 Identities=14% Similarity=0.084 Sum_probs=40.8
Q ss_pred hhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 249 RKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+..+.+.|.+.+. ...++++++++.++.+..++ +.+ .+.+.+ .++++.+.+|+||-|-|.+...
T Consensus 106 r~~l~~~L~~~~~-------~~~~i~v~~~~~v~~~~~~~-~~v-~v~~~~-----~~~~~~~~adlvIgADG~~S~v 169 (400)
T PRK06475 106 RADLQSALLDACR-------NNPGIEIKLGAEMTSQRQTG-NSI-TATIIR-----TNSVETVSAAYLIACDGVWSML 169 (400)
T ss_pred HHHHHHHHHHHHH-------hcCCcEEEECCEEEEEecCC-Cce-EEEEEe-----CCCCcEEecCEEEECCCccHhH
Confidence 4556666655432 12478999999999997543 222 232211 2344579999999999988543
No 360
>PRK07395 L-aspartate oxidase; Provisional
Probab=96.67 E-value=0.0022 Score=65.23 Aligned_cols=38 Identities=29% Similarity=0.384 Sum_probs=32.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
...||+|||+|.||++||..+. .|.+|+|+|+.+..+|
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~---~G~~V~lieK~~~~gg 45 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP---SHLRVGLITKDTLKTS 45 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh---cCCCEEEEEccCCCCC
Confidence 4579999999999999999984 4899999999876554
No 361
>PLN02697 lycopene epsilon cyclase
Probab=96.67 E-value=0.0077 Score=60.72 Aligned_cols=131 Identities=15% Similarity=0.185 Sum_probs=68.7
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccC--CHHHHHHHh------c-C
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAF--TIKEFREMT------K-L 223 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~--~~~el~~l~------~-~ 223 (388)
-.|+|||+|.+|+-+|..|+ +.|. +|.++.+..++...+ ...++.++. + -
T Consensus 109 ~DVvIVGaGPAGLalA~~La--------------------k~Gl-~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w 167 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESA--------------------KLGL-NVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVW 167 (529)
T ss_pred ccEEEECcCHHHHHHHHHHH--------------------hCCC-cEEEecCcccCCCccccchhHHHhcCcHHHHHhhc
Confidence 47999999999999998776 3444 689998765554332 122322211 0 0
Q ss_pred CCceEEeccccccc-chhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCcc
Q psy4525 224 PHVQTVFRNEQLCG-VHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQA 302 (388)
Q Consensus 224 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~ 302 (388)
+..... .+..... +......+. +..+.+.+..... +.|+++ +...++.+..++ +.+..+.
T Consensus 168 ~~~~v~-~~~~~~~~~~~~Yg~V~--R~~L~~~Ll~~a~--------~~GV~~-~~~~V~~I~~~~-~~~~vv~------ 228 (529)
T PLN02697 168 RDTIVY-LDDDKPIMIGRAYGRVS--RTLLHEELLRRCV--------ESGVSY-LSSKVDRITEAS-DGLRLVA------ 228 (529)
T ss_pred CCcEEE-ecCCceeeccCcccEEc--HHHHHHHHHHHHH--------hcCCEE-EeeEEEEEEEcC-CcEEEEE------
Confidence 111111 1111000 000000111 2334444443321 457777 566777776533 2222222
Q ss_pred ccCCceeEEecceEEEccccCCc
Q psy4525 303 LVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 303 ~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
..++.++.||.||.|+|..+.
T Consensus 229 --~~dG~~i~A~lVI~AdG~~S~ 249 (529)
T PLN02697 229 --CEDGRVIPCRLATVASGAASG 249 (529)
T ss_pred --EcCCcEEECCEEEECCCcChh
Confidence 234467999999999999763
No 362
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.66 E-value=0.025 Score=54.95 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=42.4
Q ss_pred hhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 249 RKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+..+...|.+... ...++++++++.++.+..++ +.+. +.+. . +|+++.||+||-|=|....
T Consensus 103 ~~~l~~~L~~~~~-------~~~~v~~~~~~~v~~~~~~~-~~v~-v~l~------~-dG~~~~a~llVgADG~~S~ 163 (387)
T COG0654 103 RSDLLNALLEAAR-------ALPNVTLRFGAEVEAVEQDG-DGVT-VTLS------F-DGETLDADLLVGADGANSA 163 (387)
T ss_pred hHHHHHHHHHHHh-------hCCCcEEEcCceEEEEEEcC-CceE-EEEc------C-CCcEEecCEEEECCCCchH
Confidence 5555566655543 13459999999999998754 4444 5542 2 5569999999999997754
No 363
>KOG2960|consensus
Probab=96.65 E-value=0.00048 Score=59.29 Aligned_cols=43 Identities=37% Similarity=0.425 Sum_probs=37.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC-Ccee
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF-GLVR 55 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g-g~~~ 55 (388)
..||+|||+|.|||++|..+.++.++.+|.+||.+-.+| |.|.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL 119 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL 119 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccc
Confidence 469999999999999999999877999999999987775 4453
No 364
>PRK08163 salicylate hydroxylase; Provisional
Probab=96.65 E-value=0.028 Score=54.69 Aligned_cols=45 Identities=7% Similarity=-0.056 Sum_probs=32.4
Q ss_pred eEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 272 YFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 272 gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
++++++++.++++..++ +.+. +.+ .+++++.||.||.|.|.....
T Consensus 124 ~v~~~~~~~v~~i~~~~-~~v~-v~~--------~~g~~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 124 LVEFRTSTHVVGIEQDG-DGVT-VFD--------QQGNRWTGDALIGCDGVKSVV 168 (396)
T ss_pred CcEEEeCCEEEEEecCC-CceE-EEE--------cCCCEEecCEEEECCCcChHH
Confidence 58999999999987543 3332 332 344579999999999987554
No 365
>PRK11445 putative oxidoreductase; Provisional
Probab=96.64 E-value=0.04 Score=52.75 Aligned_cols=49 Identities=12% Similarity=0.007 Sum_probs=33.0
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.++++++++.++.+..++++ + .+.+.. .++..++.||.||.|.|....
T Consensus 110 ~~gv~v~~~~~v~~i~~~~~~-~-~v~~~~-----~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 110 PASVEVYHNSLCRKIWREDDG-Y-HVIFRA-----DGWEQHITARYLVGADGANSM 158 (351)
T ss_pred hcCCEEEcCCEEEEEEEcCCE-E-EEEEec-----CCcEEEEEeCEEEECCCCCcH
Confidence 457999999999988764433 2 233211 232347899999999998754
No 366
>PRK09897 hypothetical protein; Provisional
Probab=96.63 E-value=0.011 Score=59.70 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=29.2
Q ss_pred EEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCC
Q psy4525 273 FRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQS 324 (388)
Q Consensus 273 v~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p 324 (388)
+.++..+.++.+...+++ + .+.. .+++..+.+|.||+|+|..+
T Consensus 124 V~v~~~~~V~~I~~~~~g-~-~V~t-------~~gg~~i~aD~VVLAtGh~~ 166 (534)
T PRK09897 124 VAVYESCQVTDLQITNAG-V-MLAT-------NQDLPSETFDLAVIATGHVW 166 (534)
T ss_pred EEEEECCEEEEEEEeCCE-E-EEEE-------CCCCeEEEcCEEEECCCCCC
Confidence 777788888888764422 2 2221 23346799999999999753
No 367
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=96.63 E-value=0.025 Score=54.76 Aligned_cols=42 Identities=10% Similarity=0.179 Sum_probs=29.2
Q ss_pred EEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 273 FRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 273 v~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
++++ +..++++..++ +.+ .+.+ .++.++.||.||.|.|....
T Consensus 127 v~~~-~~~v~~i~~~~-~~~-~v~~--------~~g~~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 127 LTWF-PARAQGLEVDP-DAA-TLTL--------ADGQVLRADLVVGADGAHSW 168 (388)
T ss_pred cEEE-cceeEEEEecC-CeE-EEEE--------CCCCEEEeeEEEEeCCCCch
Confidence 8887 88888886543 222 2432 33457999999999998754
No 368
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=96.62 E-value=0.0028 Score=64.98 Aligned_cols=41 Identities=22% Similarity=0.209 Sum_probs=37.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~ 55 (388)
..+|+|||+|++|+.+|..+.+ .|.+|+|+|+.+.+||...
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~--~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAI--AGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCCccc
Confidence 4799999999999999999999 8999999999988887663
No 369
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.62 E-value=0.0043 Score=62.14 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=28.2
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
.+++|+|||+|.+|+++|..|. +.|. +|+++.+++
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~--------------------~~G~-~V~~~d~~~ 49 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALL--------------------ELGA-RVTVVDDGD 49 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHH--------------------HCCC-EEEEEeCCc
Confidence 4789999999999999998775 3454 699987664
No 370
>PRK09077 L-aspartate oxidase; Provisional
Probab=96.61 E-value=0.0031 Score=64.04 Aligned_cols=38 Identities=32% Similarity=0.460 Sum_probs=32.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
...||+|||+|.||++||..+++ . .+|+|+|+.+..+|
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~--~-~~VilveK~~~~~g 44 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAE--H-RRVAVLSKGPLSEG 44 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHH--C-CCEEEEeccCCCCC
Confidence 34799999999999999999988 5 89999999876554
No 371
>PRK10015 oxidoreductase; Provisional
Probab=96.59 E-value=0.0097 Score=58.70 Aligned_cols=46 Identities=11% Similarity=0.079 Sum_probs=33.5
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.|+++++++.++.+..+ ++.+..+.. + +.++.||.||.|.|....
T Consensus 120 ~~Gv~i~~~~~V~~i~~~-~~~v~~v~~--------~-~~~i~A~~VI~AdG~~s~ 165 (429)
T PRK10015 120 QAGAQFIPGVRVDALVRE-GNKVTGVQA--------G-DDILEANVVILADGVNSM 165 (429)
T ss_pred HcCCEEECCcEEEEEEEe-CCEEEEEEe--------C-CeEEECCEEEEccCcchh
Confidence 468999999999888754 355554431 2 247999999999998654
No 372
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.59 E-value=0.025 Score=55.15 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=34.1
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.|+++++++.++.+..++ +.+ .+++ .+++.+.||.||.|.|..+..
T Consensus 123 ~~gv~v~~~~~v~~i~~~~-~~v-~v~~--------~~g~~~~ad~vI~AdG~~S~v 169 (403)
T PRK07333 123 ALGIDLREATSVTDFETRD-EGV-TVTL--------SDGSVLEARLLVAADGARSKL 169 (403)
T ss_pred hCCCEEEcCCEEEEEEEcC-CEE-EEEE--------CCCCEEEeCEEEEcCCCChHH
Confidence 4589999999999987543 222 2332 344579999999999988654
No 373
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.57 E-value=0.0023 Score=65.75 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=30.3
Q ss_pred EEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 16 vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
|+|||+|.|||+||..+++ .|.+|+|+|+.+.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae--~G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAE--LGYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHH--cCCCEEEEEecCCC
Confidence 6899999999999999999 89999999998733
No 374
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=96.57 E-value=0.039 Score=48.28 Aligned_cols=137 Identities=13% Similarity=0.102 Sum_probs=76.6
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccC-----------CHHHHHHH
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAF-----------TIKEFREM 220 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~-----------~~~el~~l 220 (388)
...|+|+|+|++|+-+|.+|+ +.+. +|.++.|+-.+--.+ -.++..++
T Consensus 30 esDViIVGaGPsGLtAAyyLA--------------------k~g~-kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~i 88 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLA--------------------KAGL-KVAIFERKLSFGGGIWGGGMLFNKIVVREEADEI 88 (262)
T ss_pred hccEEEECcCcchHHHHHHHH--------------------hCCc-eEEEEEeecccCCcccccccccceeeecchHHHH
Confidence 467999999999999999998 3454 599999875432211 12233333
Q ss_pred hcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccC
Q psy4525 221 TKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQ 300 (388)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~ 300 (388)
.+.-++...-..+. .+..... .-...++... .+.|.++.....+..+...++.+|.++...=.
T Consensus 89 L~e~gI~ye~~e~g--~~v~ds~------e~~skl~~~a---------~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt 151 (262)
T COG1635 89 LDEFGIRYEEEEDG--YYVADSA------EFASKLAARA---------LDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWT 151 (262)
T ss_pred HHHhCCcceecCCc--eEEecHH------HHHHHHHHHH---------HhcCceeeecceEEEEEEecCCceEEEEEecc
Confidence 33222222211111 1111110 1111122221 15788998888988887655447888876511
Q ss_pred ccccC---CceeEEecceEEEccccCCcc
Q psy4525 301 QALVT---EDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 301 ~~~~~---~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
-.... =+--.++++.||-|||.....
T Consensus 152 ~V~~~~lhvDPl~i~a~~VvDaTGHda~v 180 (262)
T COG1635 152 PVQMAGLHVDPLTIRAKAVVDATGHDAEV 180 (262)
T ss_pred hhhhcccccCcceeeEEEEEeCCCCchHH
Confidence 00000 011367899999999987654
No 375
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=96.55 E-value=0.013 Score=57.92 Aligned_cols=48 Identities=8% Similarity=0.161 Sum_probs=37.1
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIG 321 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G 321 (388)
+.|+++++++.++++..++++++.++.+.+. .+....+.+|.||+|+|
T Consensus 142 ~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~----~g~~~~~~a~~VVlAtG 189 (439)
T TIGR01813 142 KEGIDTRLNSKVEDLIQDDQGTVVGVVVKGK----GKGIYIKAAKAVVLATG 189 (439)
T ss_pred HcCCEEEeCCEeeEeEECCCCcEEEEEEEeC----CCeEEEEecceEEEecC
Confidence 5789999999999998765678888776431 22234689999999999
No 376
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=96.55 E-value=0.0029 Score=64.96 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=29.8
Q ss_pred cEEEECccHHHHHHHHHHH----hhCCCCcEEEEcCCCC
Q psy4525 15 NVCIVGSGPAGFYCAQQIL----KLLPQSTVDIYEKLPV 49 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~----~~~~g~~v~lie~~~~ 49 (388)
||+|||+|.|||.||..++ + .|.+|+|+|+...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e--~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDK--KGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhh--CCCeEEEEEccCC
Confidence 6999999999999999998 5 6899999998753
No 377
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.54 E-value=0.018 Score=55.95 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=26.5
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
+|+|||+|.+|+-+|..|+ +.+ .+|+++.+.+.
T Consensus 1 DviIiGaG~AGl~~A~~la--------------------~~g-~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELA--------------------RPG-LRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHH--------------------hCC-CeEEEEccCCC
Confidence 4899999999999999776 234 46999997754
No 378
>KOG2311|consensus
Probab=96.53 E-value=0.01 Score=57.33 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=30.9
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
...++|||||||.||+.||.+.++ .|.+.+++..+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR--~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAAR--LGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHh--cCCceEEeecc
Confidence 356899999999999999999999 89998888654
No 379
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.52 E-value=0.0034 Score=64.40 Aligned_cols=36 Identities=28% Similarity=0.306 Sum_probs=31.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
..||+|||+|.||++||..+++ . .+|+|+|+.+..+
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~--~-~~VilleK~~~~~ 40 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGP--R-ARTAVLTKLYPTR 40 (583)
T ss_pred eccEEEECccHHHHHHHHHHHh--C-CCEEEEeCCCCCC
Confidence 4699999999999999999987 5 8999999975433
No 380
>KOG3923|consensus
Probab=96.51 E-value=0.011 Score=53.87 Aligned_cols=37 Identities=27% Similarity=0.504 Sum_probs=30.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhh-----CCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKL-----LPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~-----~~g~~v~lie~~~ 48 (388)
.+.+|+|||+|..|++.|..+.+. .+..+|+++....
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 357999999999999999888873 2567899987543
No 381
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.51 E-value=0.011 Score=58.71 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=31.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~ 48 (388)
..++|+|||+|..|+.+|..+.+ .|. +|+++++.+
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~--~G~~~Vtlv~~~~ 307 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKR--LGAESVTIVYRRG 307 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCCeEEEeeecC
Confidence 46899999999999999999998 787 899999764
No 382
>PRK06185 hypothetical protein; Provisional
Probab=96.50 E-value=0.037 Score=54.02 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=35.4
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCce-eEEecceEEEccccCCc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDT-ELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~-~~l~~D~Vi~a~G~~p~ 325 (388)
.++++++++.++++..+ ++.+.++.+. ..++ .++.||.||.|.|....
T Consensus 122 ~~v~i~~~~~v~~~~~~-~~~v~~v~~~------~~~g~~~i~a~~vI~AdG~~S~ 170 (407)
T PRK06185 122 PNFTLRMGAEVTGLIEE-GGRVTGVRAR------TPDGPGEIRADLVVGADGRHSR 170 (407)
T ss_pred CCcEEEeCCEEEEEEEe-CCEEEEEEEE------cCCCcEEEEeCEEEECCCCchH
Confidence 57999999999998764 3566555542 2233 47999999999998753
No 383
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=96.50 E-value=0.026 Score=57.41 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=30.4
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
.++.+. ...++++..+ ++++.++.. .++..+.|+.||.|||.-
T Consensus 114 ~nV~I~-q~~V~~Li~e-~grV~GV~t--------~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 114 PNLDLF-QGEVEDLIVE-NGRVVGVVT--------QDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred CCcEEE-EeEEEEEEec-CCEEEEEEE--------CCCCEEECCEEEEeeCcc
Confidence 467764 5567777653 467777764 345689999999999954
No 384
>PRK09126 hypothetical protein; Provisional
Probab=96.46 E-value=0.025 Score=54.96 Aligned_cols=47 Identities=6% Similarity=0.023 Sum_probs=34.6
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
..|+++++++.++.+..++ +.+ .+.+ .+++++.||.||.|.|..+..
T Consensus 123 ~~g~~i~~~~~v~~~~~~~-~~~-~v~~--------~~g~~~~a~~vI~AdG~~S~v 169 (392)
T PRK09126 123 QDGIELLTGTRVTAVRTDD-DGA-QVTL--------ANGRRLTARLLVAADSRFSAT 169 (392)
T ss_pred CCCcEEEcCCeEEEEEEcC-CeE-EEEE--------cCCCEEEeCEEEEeCCCCchh
Confidence 4689999999999987643 222 3433 234579999999999988664
No 385
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=96.42 E-value=0.022 Score=55.07 Aligned_cols=43 Identities=9% Similarity=0.176 Sum_probs=31.4
Q ss_pred EEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 273 FRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 273 v~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+++++++.++++..++ +.+ .+.+ .+++.+.+|.||.|.|....
T Consensus 122 ~~v~~~~~v~~i~~~~-~~~-~v~~--------~~g~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 122 VTLLCPARVVELPRHS-DHV-ELTL--------DDGQQLRARLLVGADGANSK 164 (385)
T ss_pred cEEecCCeEEEEEecC-Cee-EEEE--------CCCCEEEeeEEEEeCCCCCH
Confidence 8999999999987543 333 2333 34457999999999998754
No 386
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.41 E-value=0.045 Score=53.12 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=32.8
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.++++++++.++.+..++++ ..+.+ .+++++.+|+||.|.|.....
T Consensus 126 ~gv~i~~~~~v~~i~~~~~~--~~v~~--------~~g~~~~a~~vI~AdG~~S~v 171 (391)
T PRK08020 126 PNVTLRCPASLQALQRDDDG--WELTL--------ADGEEIQAKLVIGADGANSQV 171 (391)
T ss_pred CCcEEEcCCeeEEEEEcCCe--EEEEE--------CCCCEEEeCEEEEeCCCCchh
Confidence 48999999999988754322 22332 334579999999999988754
No 387
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=96.39 E-value=0.0046 Score=57.01 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=31.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
.++|+|||||.||++|+..+.+ .|.++.++.+..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~--~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQ--AGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHh--cCCcEEEEeCCh
Confidence 4799999999999999999999 999999998753
No 388
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.39 E-value=0.047 Score=52.80 Aligned_cols=45 Identities=9% Similarity=0.130 Sum_probs=32.6
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
.|++++++..++++..++++ + .+.+ .+++++.||.||.|.|....
T Consensus 119 ~gv~~~~~~~v~~i~~~~~~-~-~v~~--------~~g~~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 119 TNIQLYCPARYKEIIRNQDY-V-RVTL--------DNGQQLRAKLLIAADGANSK 163 (382)
T ss_pred CCcEEEcCCeEEEEEEcCCe-E-EEEE--------CCCCEEEeeEEEEecCCChH
Confidence 48999999999999764432 2 2332 23457999999999998753
No 389
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=96.39 E-value=0.071 Score=54.37 Aligned_cols=49 Identities=10% Similarity=0.146 Sum_probs=33.8
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.++++++++.++++..++++ + .+.+.+ .++.+++.||.||.|.|.+...
T Consensus 139 ~~v~v~~~~~v~~i~~~~~~-v-~v~~~~-----~~g~~~i~ad~vVgADG~~S~v 187 (547)
T PRK08132 139 PNIDLRWKNKVTGLEQHDDG-V-TLTVET-----PDGPYTLEADWVIACDGARSPL 187 (547)
T ss_pred CCcEEEeCCEEEEEEEcCCE-E-EEEEEC-----CCCcEEEEeCEEEECCCCCcHH
Confidence 46999999999999865433 2 222221 1223479999999999988754
No 390
>PRK08244 hypothetical protein; Provisional
Probab=96.38 E-value=0.023 Score=57.17 Aligned_cols=50 Identities=10% Similarity=0.032 Sum_probs=34.3
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.|+++++++.++++..++++ + .+.+.+ .+..+++.+|.||.|.|.+...
T Consensus 112 ~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~-----~~g~~~i~a~~vVgADG~~S~v 161 (493)
T PRK08244 112 SLGVEIFRGAEVLAVRQDGDG-V-EVVVRG-----PDGLRTLTSSYVVGADGAGSIV 161 (493)
T ss_pred HcCCeEEeCCEEEEEEEcCCe-E-EEEEEe-----CCccEEEEeCEEEECCCCChHH
Confidence 458999999999998765433 2 233321 1112579999999999998754
No 391
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.38 E-value=0.012 Score=58.46 Aligned_cols=77 Identities=14% Similarity=0.122 Sum_probs=51.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++++|+|+|.+|+.+|..|.+ .|++|+++|+.... .+ ....+.+...+++++.+....
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~--~G~~V~~~d~~~~~----------------~~-~~~~~~l~~~~~~~~~~~~~~- 63 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKK--LGAKVILTDEKEED----------------QL-KEALEELGELGIELVLGEYPE- 63 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCchH----------------HH-HHHHHHHHhcCCEEEeCCcch-
Confidence 35789999999999999999999 99999999976310 11 111222344566554333221
Q ss_pred EeeecccccccCEEEEeeCCCC
Q psy4525 92 DISLGDLTNAYHAVVLTYGADN 113 (388)
Q Consensus 92 ~~~~~~~~~~yd~lvlAtG~~~ 113 (388)
.....+|.||+++|..+
T Consensus 64 -----~~~~~~d~vv~~~g~~~ 80 (450)
T PRK14106 64 -----EFLEGVDLVVVSPGVPL 80 (450)
T ss_pred -----hHhhcCCEEEECCCCCC
Confidence 12236899999999654
No 392
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.37 E-value=0.033 Score=54.03 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=34.6
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.+++++++..++++..++++ + .+.+ .++.++.||+||.|.|.+...
T Consensus 124 ~~i~i~~~~~v~~~~~~~~~-~-~v~~--------~~g~~~~~~lvIgADG~~S~v 169 (384)
T PRK08849 124 PNLTLMCPEKLADLEFSAEG-N-RVTL--------ESGAEIEAKWVIGADGANSQV 169 (384)
T ss_pred CCeEEECCCceeEEEEcCCe-E-EEEE--------CCCCEEEeeEEEEecCCCchh
Confidence 57999999999999865433 2 3443 344689999999999998764
No 393
>KOG1399|consensus
Probab=96.36 E-value=0.025 Score=55.68 Aligned_cols=127 Identities=13% Similarity=0.119 Sum_probs=70.6
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcc----ccc----------------
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGAL----QVA---------------- 211 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~----~~~---------------- 211 (388)
.++|+|||+|.+|+-.|..|. +.| .+|+++.|++.+ ...
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~--------------------~~g-~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~t 64 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELL--------------------REG-HEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRT 64 (448)
T ss_pred CCceEEECcchHHHHHHHHHH--------------------HCC-CCceEEEecCCccceEeecCcccccccchhhhhhc
Confidence 589999999999999999776 233 468888887643 221
Q ss_pred CCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCc
Q psy4525 212 FTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGA 291 (388)
Q Consensus 212 ~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~ 291 (388)
-+++|+..+.+.|+... .+... -....++++|..++... .....+.++..+.++....+|.
T Consensus 65 n~pKe~~~~~dfpf~~~------------~~~~~-p~~~e~~~YL~~yA~~F------~l~~~i~f~~~v~~v~~~~~gk 125 (448)
T KOG1399|consen 65 NLPKEMMGYSDFPFPER------------DPRYF-PSHREVLEYLRDYAKHF------DLLKMINFNTEVVRVDSIDKGK 125 (448)
T ss_pred cCChhhhcCCCCCCccc------------CcccC-CCHHHHHHHHHHHHHhc------ChhhheEecccEEEEeeccCCc
Confidence 01122222222221110 00000 01346677777766422 2234567777777776543233
Q ss_pred eeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 292 ITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 292 v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
...... +. .+..++.-+|.|++|+|-.
T Consensus 126 W~V~~~-~~----~~~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 126 WRVTTK-DN----GTQIEEEIFDAVVVCTGHY 152 (448)
T ss_pred eeEEEe-cC----CcceeEEEeeEEEEcccCc
Confidence 322211 11 1114678899999999987
No 394
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.36 E-value=0.0051 Score=62.34 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=34.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
...||+|||+|.|||.||..+++ .|.+|+|+|+.+..+
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~--~g~~V~l~~K~~~~r 42 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAE--AGLKVALLSKAPPKR 42 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHh--cCCcEEEEEccccCC
Confidence 45799999999999999999999 899999999876543
No 395
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.36 E-value=0.012 Score=58.77 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=29.8
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
.+++|+|||+|+.|+.+|..|++ +....+|+++.+.+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~-------------------~~~g~~Vtv~E~~p~ 62 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLK-------------------AHDGARVDIIERLPT 62 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHh-------------------hCCCCeEEEEecCCC
Confidence 46899999999999999998861 012347999998864
No 396
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.35 E-value=0.026 Score=57.63 Aligned_cols=86 Identities=19% Similarity=0.111 Sum_probs=56.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++|+|||||+.|+.+|..|.+ .+.+|+++++.+.+. . ...+.. ......+++++.++.+..
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~--~g~~Vtli~~~~~~~--------~----~~~~~~---~~~~~~gV~i~~~~~V~~ 204 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTR--YASKVTVIVREPDFT--------C----AKLIAE---KVKNHPKIEVKFNTELKE 204 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHc--cCCEEEEEEeCCccc--------c----CHHHHH---HHHhCCCcEEEeCCEEEE
Confidence 46899999999999999999998 899999999875431 1 111222 223446898887766532
Q ss_pred E--------ee---ecccc-c----ccCE----EEEeeCCCCC
Q psy4525 92 D--------IS---LGDLT-N----AYHA----VVLTYGADND 114 (388)
Q Consensus 92 ~--------~~---~~~~~-~----~yd~----lvlAtG~~~~ 114 (388)
. +. ..+++ . .+|. |++|+|..|.
T Consensus 205 i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn 247 (555)
T TIGR03143 205 ATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPS 247 (555)
T ss_pred EEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCC
Confidence 1 11 11121 1 2455 9999998774
No 397
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.33 E-value=0.0095 Score=59.44 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=29.1
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
.+++|+|||+|.+|+.+|..|+ +.+. +|+++.+.+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~--------------------~~G~-~V~i~e~~~~ 175 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILA--------------------RAGV-QVVVFDRHPE 175 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHH--------------------HcCC-eEEEEecCCC
Confidence 4789999999999999999776 2343 6999987754
No 398
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=96.32 E-value=0.043 Score=55.86 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=35.7
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.++++++++.++++..++++ + .+.+.+. .++.+++.||.||-|.|.+...
T Consensus 127 ~gv~v~~g~~v~~i~~~~~~-v-~v~~~~~----~G~~~~i~ad~vVgADG~~S~v 176 (538)
T PRK06183 127 PHVRVRFGHEVTALTQDDDG-V-TVTLTDA----DGQRETVRARYVVGCDGANSFV 176 (538)
T ss_pred CCcEEEcCCEEEEEEEcCCe-E-EEEEEcC----CCCEEEEEEEEEEecCCCchhH
Confidence 48999999999999875533 2 2333211 2334689999999999988654
No 399
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.29 E-value=0.016 Score=61.41 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=31.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCc-EEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQST-VDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~-v~lie~~~ 48 (388)
..++|+|||||..|+.+|..+.+ .|.+ |+++++.+
T Consensus 569 ~gk~VvVIGgG~~a~d~A~~~~r--~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 569 FGKKVAVVGGGNTAMDSARTAKR--LGAERVTIVYRRS 604 (752)
T ss_pred CCCcEEEECCcHHHHHHHHHHHH--cCCCeEEEeeecC
Confidence 45899999999999999999999 7887 99999764
No 400
>PRK07538 hypothetical protein; Provisional
Probab=96.29 E-value=0.051 Score=53.26 Aligned_cols=48 Identities=8% Similarity=0.023 Sum_probs=32.8
Q ss_pred EEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 273 FRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 273 v~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
..+++++.++++..++++.+..+ .++ ..++++++.||+||-|-|.+..
T Consensus 119 ~~i~~~~~v~~~~~~~~~~~~~~--~~~---~~g~~~~~~adlvIgADG~~S~ 166 (413)
T PRK07538 119 DAVRTGHRVVGFEQDADVTVVFL--GDR---AGGDLVSVRGDVLIGADGIHSA 166 (413)
T ss_pred cEEEcCCEEEEEEecCCceEEEE--ecc---CCCccceEEeeEEEECCCCCHH
Confidence 46899999999876554433222 221 1344568999999999998653
No 401
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.27 E-value=0.015 Score=57.60 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=29.9
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcc
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGAL 208 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~ 208 (388)
.+++|+|||+|++|+.+|..|+ .+.+ .+|+++.|.+.+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll-------------------~~~g-~~VtlfEk~p~p 75 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLL-------------------KHER-VKVDIFEKLPNP 75 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHH-------------------HhcC-CeEEEEecCCCC
Confidence 4689999999999999999764 1123 469999988653
No 402
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.25 E-value=0.036 Score=56.39 Aligned_cols=46 Identities=17% Similarity=0.142 Sum_probs=31.9
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
.++.++.. .++.+..++++.+.++.. .++..+.||.||+|||.-.+
T Consensus 110 pgV~Ile~-~Vv~li~e~~g~V~GV~t--------~~G~~I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 110 PNLSLFQG-EVEDLILEDNDEIKGVVT--------QDGLKFRAKAVIITTGTFLR 155 (617)
T ss_pred CCcEEEEe-EEEEEEEecCCcEEEEEE--------CCCCEEECCEEEEccCcccC
Confidence 47777654 566665433467777765 33457999999999998754
No 403
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.24 E-value=0.014 Score=58.61 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=29.3
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
.+++|+|||+|.+|+.+|..|+ +.+ .+|+++.+.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~--------------------~~g-~~V~v~e~~~~ 177 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLN--------------------RAG-HTVTVFEREDR 177 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHH--------------------HcC-CeEEEEecCCC
Confidence 4689999999999999999886 234 36999988754
No 404
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.23 E-value=0.072 Score=52.01 Aligned_cols=47 Identities=6% Similarity=0.046 Sum_probs=33.9
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.++++++++.++++..++++ + .+.+ .+++++.||.||.|.|.....
T Consensus 124 ~~gv~v~~~~~v~~i~~~~~~-v-~v~~--------~~g~~~~a~~vVgAdG~~S~v 170 (405)
T PRK05714 124 DSDIGLLANARLEQMRRSGDD-W-LLTL--------ADGRQLRAPLVVAADGANSAV 170 (405)
T ss_pred cCCCEEEcCCEEEEEEEcCCe-E-EEEE--------CCCCEEEeCEEEEecCCCchh
Confidence 458999999999998765432 2 2332 344579999999999987644
No 405
>PRK02106 choline dehydrogenase; Validated
Probab=96.22 E-value=0.0061 Score=62.32 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=32.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
.+|+||||+|+||+.+|..|.+. ++.+|+|+|+.+.
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~-~g~~VlvlEaG~~ 40 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSED-PDVSVLLLEAGGP 40 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhC-CCCeEEEecCCCc
Confidence 47999999999999999999984 6999999999853
No 406
>PRK06126 hypothetical protein; Provisional
Probab=96.21 E-value=0.073 Score=54.26 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=35.7
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.++++++++.++++..+++ .+. +.+.+. .+++..++.+|.||.|.|.+...
T Consensus 140 ~~v~i~~~~~v~~i~~~~~-~v~-v~~~~~---~~g~~~~i~ad~vVgADG~~S~V 190 (545)
T PRK06126 140 PGVTLRYGHRLTDFEQDAD-GVT-ATVEDL---DGGESLTIRADYLVGCDGARSAV 190 (545)
T ss_pred CCceEEeccEEEEEEECCC-eEE-EEEEEC---CCCcEEEEEEEEEEecCCcchHH
Confidence 5799999999999987543 333 333221 13444689999999999987643
No 407
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=96.21 E-value=0.023 Score=53.99 Aligned_cols=47 Identities=21% Similarity=0.168 Sum_probs=34.2
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.|+.+++++.++++..+ ++.+.+++ +.+++ +.+|.||+|+|...+.
T Consensus 159 ~~Gv~i~~~~~V~~i~~~-~~~v~gv~--------~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 159 RAGVEIRTGTEVTSIDVD-GGRVTGVR--------TSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HTT-EEEESEEEEEEEEE-TTEEEEEE--------ETTEE-EEECEEEE--GGGHHH
T ss_pred Hhhhhccccccccchhhc-cccccccc--------ccccc-cccceeEeccccccee
Confidence 568999999999999875 35666675 45555 9999999999987655
No 408
>KOG1298|consensus
Probab=96.20 E-value=0.006 Score=57.42 Aligned_cols=35 Identities=31% Similarity=0.304 Sum_probs=32.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
...||+|||||.+|.++|..|.+ .|-+|+++||.-
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~k--dGRrVhVIERDl 78 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAK--DGRRVHVIERDL 78 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhh--CCcEEEEEeccc
Confidence 45799999999999999999999 999999999863
No 409
>PRK08013 oxidoreductase; Provisional
Probab=96.19 E-value=0.073 Score=51.97 Aligned_cols=46 Identities=9% Similarity=0.087 Sum_probs=33.3
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.+++++++..++.+..++++ + .+.+ .+++++.+|+||-|-|.+...
T Consensus 125 ~~v~i~~~~~v~~i~~~~~~-v-~v~~--------~~g~~i~a~lvVgADG~~S~v 170 (400)
T PRK08013 125 SDITLLAPAELQQVAWGENE-A-FLTL--------KDGSMLTARLVVGADGANSWL 170 (400)
T ss_pred CCcEEEcCCeeEEEEecCCe-E-EEEE--------cCCCEEEeeEEEEeCCCCcHH
Confidence 47999999999998754432 2 2333 234679999999999987554
No 410
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.12 E-value=0.0088 Score=59.55 Aligned_cols=41 Identities=22% Similarity=0.197 Sum_probs=36.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCc
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGL 53 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~ 53 (388)
....||+|||||..|+.+|..++. .|++|+|+|+.+...|.
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~--RGl~v~LvE~~D~AsGT 50 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAG--RGLKVALVEKGDLASGT 50 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHh--CCCeEEEEecCcccCcc
Confidence 367899999999999999999999 89999999998765543
No 411
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.12 E-value=0.013 Score=58.44 Aligned_cols=79 Identities=14% Similarity=0.126 Sum_probs=51.2
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEEee
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQDIS 94 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~~~ 94 (388)
+|+|||.|++|+++|..|.+ .|++|+++|+.... . .......+...|+.+..+...... .
T Consensus 2 ~v~viG~G~sG~s~a~~l~~--~G~~V~~~D~~~~~----------~-------~~~~~~~l~~~gi~~~~g~~~~~~-~ 61 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKA--QGWEVVVSDRNDSP----------E-------LLERQQELEQEGITVKLGKPLELE-S 61 (459)
T ss_pred eEEEEccCHHHHHHHHHHHH--CCCEEEEECCCCch----------h-------hHHHHHHHHHcCCEEEECCccchh-h
Confidence 58999999999999999999 89999999987442 1 111122334457776654322100 0
Q ss_pred ecccccccCEEEEeeCCCC
Q psy4525 95 LGDLTNAYHAVVLTYGADN 113 (388)
Q Consensus 95 ~~~~~~~yd~lvlAtG~~~ 113 (388)
.......+|.||++.|..+
T Consensus 62 ~~~~~~~~d~vv~s~gi~~ 80 (459)
T PRK02705 62 FQPWLDQPDLVVVSPGIPW 80 (459)
T ss_pred hhHHhhcCCEEEECCCCCC
Confidence 0011235899999888654
No 412
>PRK07190 hypothetical protein; Provisional
Probab=96.09 E-value=0.068 Score=53.62 Aligned_cols=47 Identities=19% Similarity=0.075 Sum_probs=34.0
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.|+++++++.++.+..++++ +. +.+ .+++++.|+.||.|.|.+...
T Consensus 121 ~~Gv~v~~~~~v~~l~~~~~~-v~-v~~--------~~g~~v~a~~vVgADG~~S~v 167 (487)
T PRK07190 121 EAGAAVKRNTSVVNIELNQAG-CL-TTL--------SNGERIQSRYVIGADGSRSFV 167 (487)
T ss_pred HCCCEEEeCCEEEEEEEcCCe-eE-EEE--------CCCcEEEeCEEEECCCCCHHH
Confidence 468999999999999865433 22 221 234589999999999987643
No 413
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.07 E-value=0.004 Score=61.39 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=0.0
Q ss_pred CCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 268 NCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 268 ~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
+.+.|+++++++.++.+..+ ++++.+|.+.+. . ...++.||.+|=|||.
T Consensus 100 l~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~----~-g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 100 LAEAGVEVLLGTRVVDVIRD-GGRITGVIVETK----S-GRKEIRAKVFIDATGD 148 (428)
T ss_dssp -------------------------------------------------------
T ss_pred cccccccccccccccccccc-cccccccccccc----c-cccccccccccccccc
Confidence 34689999999999999875 478888887542 1 2578999999999994
No 414
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=96.06 E-value=0.042 Score=53.85 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=32.1
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.|+++++++.++++..++ +.+..++ +.+ .++.||.||+|+|....
T Consensus 213 ~~G~~i~~~~~V~~i~~~~-~~~~~v~--------t~~-~~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 213 QLGVKFRFNTPVDGLLVEG-GRITGVQ--------TGG-GVITADAYVVALGSYST 258 (416)
T ss_pred HCCCEEEcCCEEEEEEecC-CEEEEEE--------eCC-cEEeCCEEEECCCcchH
Confidence 5688998888888887543 4444443 222 36899999999997543
No 415
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.06 E-value=0.0067 Score=65.43 Aligned_cols=36 Identities=31% Similarity=0.391 Sum_probs=32.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
...||+|||+|.||+.||..+++ .|.+|+|+|+.+.
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~--~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAE--HGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHH--CCCeEEEEecccc
Confidence 35799999999999999999999 8999999998764
No 416
>KOG1346|consensus
Probab=96.06 E-value=0.019 Score=54.57 Aligned_cols=94 Identities=16% Similarity=0.131 Sum_probs=66.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhC--CCCcEE-EEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLL--PQSTVD-IYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNI 87 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~--~g~~v~-lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~ 87 (388)
...+.|-|||+|+-|-.+|..|.++. .|.+|. +|+..... ....++.+..|-.+.+++.|+.++.+.
T Consensus 345 aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm----------~kiLPeyls~wt~ekir~~GV~V~pna 414 (659)
T KOG1346|consen 345 AEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNM----------EKILPEYLSQWTIEKIRKGGVDVRPNA 414 (659)
T ss_pred hhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCCh----------hhhhHHHHHHHHHHHHHhcCceeccch
Confidence 44578999999999999999888863 456664 55543111 112344466677777888899998887
Q ss_pred EEEE--------Eeeeccccc-ccCEEEEeeCCCCC
Q psy4525 88 CLGQ--------DISLGDLTN-AYHAVVLTYGADND 114 (388)
Q Consensus 88 ~v~~--------~~~~~~~~~-~yd~lvlAtG~~~~ 114 (388)
.|.. .+.+.++.. .-|.||+|+|..|+
T Consensus 415 ~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN 450 (659)
T KOG1346|consen 415 KVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPN 450 (659)
T ss_pred hhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCc
Confidence 7631 245566544 88999999998874
No 417
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.04 E-value=0.056 Score=53.00 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=29.6
Q ss_pred EEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 273 FRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 273 v~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
..+++++.++++..++++ + .+.+ .++.++.+|.||.|.|....
T Consensus 118 ~~v~~~~~v~~i~~~~~~-~-~v~~--------~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 118 GIASFGKRATQIEEQAEE-V-QVLF--------TDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred ceEEcCCEEEEEEecCCc-E-EEEE--------cCCCEEEeeEEEECCCccHH
Confidence 456788999988764432 2 3433 33457999999999997753
No 418
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.03 E-value=0.049 Score=52.63 Aligned_cols=37 Identities=27% Similarity=0.431 Sum_probs=30.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhC---CCCcEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLL---PQSTVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~---~g~~v~lie~~ 47 (388)
....+++|||+||+|+.+|..+.... +.+.+.++|..
T Consensus 16 ~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g 55 (486)
T COG2509 16 NAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVG 55 (486)
T ss_pred hhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEec
Confidence 34589999999999999999998642 36788888854
No 419
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.01 E-value=0.039 Score=53.69 Aligned_cols=51 Identities=8% Similarity=0.010 Sum_probs=34.6
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
..|+++++++.++++...+ +....+.+.. .++..++.||+||-|-|.+...
T Consensus 115 ~~gv~v~~~~~v~~i~~~~-~~~~~V~~~~-----~G~~~~i~ad~vVgADG~~S~v 165 (392)
T PRK08243 115 AAGGPIRFEASDVALHDFD-SDRPYVTYEK-----DGEEHRLDCDFIAGCDGFHGVS 165 (392)
T ss_pred hCCCeEEEeeeEEEEEecC-CCceEEEEEc-----CCeEEEEEeCEEEECCCCCCch
Confidence 4578999999998887422 2223344421 2334579999999999988654
No 420
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.01 E-value=0.021 Score=59.32 Aligned_cols=36 Identities=22% Similarity=0.466 Sum_probs=29.8
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
.+++|+|||+|.+|+..|..|+ +.|. +|+++.+.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~--------------------~~G~-~Vtv~e~~~~ 344 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILA--------------------RAGV-QVDVFDRHPE 344 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHH--------------------HcCC-cEEEEeCCCC
Confidence 4799999999999999999876 2444 6999988764
No 421
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.01 E-value=0.022 Score=61.34 Aligned_cols=36 Identities=11% Similarity=0.352 Sum_probs=29.5
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
.+++|+|||||+.|+.+|..|+ +.| .+|+++.+.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LA--------------------r~G-~~VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLA--------------------RAG-HPVTVFEKKEK 571 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHH--------------------HCC-CeEEEEecccc
Confidence 4679999999999999999886 244 46999988754
No 422
>PLN02985 squalene monooxygenase
Probab=95.99 E-value=0.072 Score=53.81 Aligned_cols=65 Identities=12% Similarity=0.136 Sum_probs=38.2
Q ss_pred hhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 249 RKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.++...+.+... ...++++..+ +++++..+ ++.+.++++.+. .++..++.+|+||.|.|.....
T Consensus 146 r~~l~~~L~~~a~-------~~~~V~i~~g-tvv~li~~-~~~v~gV~~~~~----dG~~~~~~AdLVVgADG~~S~v 210 (514)
T PLN02985 146 NGRFVQRLRQKAS-------SLPNVRLEEG-TVKSLIEE-KGVIKGVTYKNS----AGEETTALAPLTVVCDGCYSNL 210 (514)
T ss_pred cHHHHHHHHHHHH-------hCCCeEEEee-eEEEEEEc-CCEEEEEEEEcC----CCCEEEEECCEEEECCCCchHH
Confidence 3445555554432 1346888765 45655543 355666665321 2333467899999999987653
No 423
>PLN02661 Putative thiazole synthesis
Probab=95.99 E-value=0.074 Score=50.49 Aligned_cols=54 Identities=9% Similarity=0.108 Sum_probs=36.9
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCcc-cc--C---CceeEEecceEEEccccCC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQA-LV--T---EDTELIPSGIAFRSIGYQS 324 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~-~~--~---~~~~~l~~D~Vi~a~G~~p 324 (388)
..+++++.+..+.++..+ ++++.++.+..... .. . .+...+.|+.||+|||-.+
T Consensus 185 ~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g 244 (357)
T PLN02661 185 RPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDG 244 (357)
T ss_pred cCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCC
Confidence 468999999999998875 47788876431000 00 0 1224789999999999654
No 424
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.94 E-value=0.032 Score=55.72 Aligned_cols=37 Identities=22% Similarity=0.564 Sum_probs=30.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLPVP 50 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~~~ 50 (388)
..++|+|||+|+.|+.+|..+.+ .|. +|++++..+.+
T Consensus 280 ~gk~VvVIGgG~~g~e~A~~~~~--~ga~~Vt~~~~~~~~ 317 (471)
T PRK12810 280 KGKHVVVIGGGDTGMDCVGTAIR--QGAKSVTQRDIMPMP 317 (471)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--cCCCeEEEccccCCC
Confidence 46899999999999999998887 665 78887766443
No 425
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=95.91 E-value=0.048 Score=55.04 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=38.3
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccc-cCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIG-YQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G-~~p~ 325 (388)
+.|+++++++.++++..+ +++|.++.+... .++...+.+|.||+|+| |.+|
T Consensus 202 ~~gv~i~~~t~v~~l~~~-~g~V~Gv~~~~~----~g~~~~i~a~~VVlAtGG~~~n 253 (506)
T PRK06481 202 ERKIPLFVNADVTKITEK-DGKVTGVKVKIN----GKETKTISSKAVVVTTGGFGAN 253 (506)
T ss_pred HcCCeEEeCCeeEEEEec-CCEEEEEEEEeC----CCeEEEEecCeEEEeCCCcccC
Confidence 568999999999999864 478888766421 22345799999999998 6554
No 426
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.89 E-value=0.03 Score=59.66 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=29.9
Q ss_pred CCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 150 LDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 150 ~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
..+++|+|||+|+.|+.+|..|+ +.| .+|+++.+..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La--------------------~~G-h~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLL--------------------RSG-HNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHH--------------------hCC-CeEEEEcccc
Confidence 45799999999999999999887 234 4799999763
No 427
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=95.86 E-value=0.11 Score=50.83 Aligned_cols=46 Identities=4% Similarity=0.104 Sum_probs=33.4
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.+++++++..++.+..+++ . ..+.+ .+++++.||+||.|.|.+...
T Consensus 125 ~~v~v~~~~~v~~i~~~~~-~-~~v~~--------~~g~~~~a~lvIgADG~~S~v 170 (405)
T PRK08850 125 DNVTLLMPARCQSIAVGES-E-AWLTL--------DNGQALTAKLVVGADGANSWL 170 (405)
T ss_pred CCeEEEcCCeeEEEEeeCC-e-EEEEE--------CCCCEEEeCEEEEeCCCCChh
Confidence 5799999999999875432 2 23433 344689999999999987543
No 428
>PRK07121 hypothetical protein; Validated
Probab=95.85 E-value=0.049 Score=54.74 Aligned_cols=48 Identities=15% Similarity=0.157 Sum_probs=37.5
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEec-ceEEEcccc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPS-GIAFRSIGY 322 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~-D~Vi~a~G~ 322 (388)
+.|+++++++.++++..++++++.++.... .++...+.+ +.||+|||-
T Consensus 189 ~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-----~~~~~~i~a~k~VVlAtGg 237 (492)
T PRK07121 189 ALGVQIRYDTRATRLIVDDDGRVVGVEARR-----YGETVAIRARKGVVLAAGG 237 (492)
T ss_pred hCCCEEEeCCEEEEEEECCCCCEEEEEEEe-----CCcEEEEEeCCEEEECCCC
Confidence 568999999999999876557888887632 233456888 999999993
No 429
>PRK07512 L-aspartate oxidase; Provisional
Probab=95.83 E-value=0.012 Score=59.41 Aligned_cols=34 Identities=29% Similarity=0.448 Sum_probs=29.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
...||+|||+|.||+.||..++. .+|+|+|+.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa~----~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLAP----RPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhCc----CCEEEEECCCC
Confidence 35799999999999999999863 59999999876
No 430
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.80 E-value=0.13 Score=49.96 Aligned_cols=44 Identities=9% Similarity=0.190 Sum_probs=29.9
Q ss_pred eEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 272 YFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 272 gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
++. +++..++.+..+++ .+ .+.+ .+++++.+|.||.|.|.....
T Consensus 126 ~~~-~~~~~v~~i~~~~~-~~-~v~~--------~~g~~~~a~~vI~AdG~~S~v 169 (388)
T PRK07494 126 NIT-RFGDEAESVRPRED-EV-TVTL--------ADGTTLSARLVVGADGRNSPV 169 (388)
T ss_pred CcE-EECCeeEEEEEcCC-eE-EEEE--------CCCCEEEEeEEEEecCCCchh
Confidence 455 77888888875432 22 2332 334679999999999987643
No 431
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.78 E-value=0.02 Score=51.12 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=30.3
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
++++|||+|..|.+.|..|.+ .|.+|+++|+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~--~g~~Vv~Id~d 32 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSE--EGHNVVLIDRD 32 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHh--CCCceEEEEcC
Confidence 479999999999999999999 89999999987
No 432
>KOG4254|consensus
Probab=95.77 E-value=0.0099 Score=57.09 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=42.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCc
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHP 63 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~ 63 (388)
++.+|++|||+|.-||.||.+|++ -+.+|.++|+....||.- ...+.|.+.
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r--~g~~V~vlerrhv~gGaavteeivpGfK 63 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLAR--YGQSVAVLERRHVIGGAAVTEEIVPGFK 63 (561)
T ss_pred CcccceEEecCCccchhHHHHHHh--cCcceEEEEEeeecCcceeeehhccccc
Confidence 567999999999999999999999 899999999997776654 334456654
No 433
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.77 E-value=0.17 Score=48.95 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=39.2
Q ss_pred hhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 249 RKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+..+...|.+.+. ...++.+++++.++++..+++ .+ .+.+ +++ ++.+|+||.|-|.+...
T Consensus 103 r~~L~~~L~~~~~-------~~~~v~~~~~~~v~~i~~~~~-~v-~v~~--------~~~-~~~adlvIgADG~~S~v 162 (374)
T PRK06617 103 NSDFKKILLSKIT-------NNPLITLIDNNQYQEVISHND-YS-IIKF--------DDK-QIKCNLLIICDGANSKV 162 (374)
T ss_pred HHHHHHHHHHHHh-------cCCCcEEECCCeEEEEEEcCC-eE-EEEE--------cCC-EEeeCEEEEeCCCCchh
Confidence 4555555555432 123588999999999876443 22 2433 233 79999999999988655
No 434
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=95.76 E-value=0.08 Score=51.22 Aligned_cols=42 Identities=14% Similarity=0.028 Sum_probs=28.4
Q ss_pred EEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 274 RPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 274 ~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
...++..++.+...++ ...+ .+.++.++.|+.||-|.|..+.
T Consensus 102 ~~~~~~~V~~i~~~~~--~~~v--------~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 102 VIRLNARVTSIEETGD--GVLV--------VLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEccEEEEEEecCc--eEEE--------EECCCCEEEeeEEEECCCcccc
Confidence 3556778888875432 2222 2455668999999999997654
No 435
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=95.75 E-value=0.011 Score=60.02 Aligned_cols=37 Identities=27% Similarity=0.288 Sum_probs=33.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
...+|+||||+|.+|..+|..|.. ++.+|+|+|+...
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~--~g~~VllLEaG~~ 41 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSD--AGLSVLVLEAGGP 41 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcC--CCCeEEEEeCCCC
Confidence 456899999999999999999997 9999999998843
No 436
>PRK06996 hypothetical protein; Provisional
Probab=95.72 E-value=0.089 Score=51.33 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=30.8
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
..++.+++++.++++..++++ + .+.+.++ +.++++.||+||-|-|.
T Consensus 127 ~~g~~~~~~~~v~~~~~~~~~-v-~v~~~~~-----~g~~~i~a~lvIgADG~ 172 (398)
T PRK06996 127 GTPVRWLTSTTAHAPAQDADG-V-TLALGTP-----QGARTLRARIAVQAEGG 172 (398)
T ss_pred hCCCEEEcCCeeeeeeecCCe-E-EEEECCC-----CcceEEeeeEEEECCCC
Confidence 457889999998888654333 2 2333221 11267999999999995
No 437
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=95.71 E-value=0.11 Score=50.35 Aligned_cols=53 Identities=6% Similarity=0.028 Sum_probs=30.6
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.|++++.. .++++..++ +.+ .+.+.++..-..+...++.+|.||.|.|....
T Consensus 104 ~~G~~v~~~-~v~~v~~~~-~~~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 104 KAGAELIHG-LFLKLERDR-DGV-TLTYRTPKKGAGGEKGSVEADVVIGADGANSP 156 (388)
T ss_pred hCCCEEEee-EEEEEEEcC-CeE-EEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence 457888654 577776543 322 34432210000123357999999999997654
No 438
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=95.68 E-value=0.086 Score=50.90 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=26.0
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
.|+|||||..|+.+|..|++. ....+|.++.+.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~-------------------~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRA-------------------RPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhc-------------------CCCCeEEEEeCCC
Confidence 489999999999999988611 1134699998876
No 439
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=95.65 E-value=0.028 Score=61.24 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=29.5
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
.+++|+|||+|+.|+.+|..|+ +.+ .+|+++.+.+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La--------------------~~G-~~VtV~E~~~~ 464 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLV--------------------KYG-VDVTVYEALHV 464 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHH--------------------HcC-CcEEEEecCCC
Confidence 4689999999999999999886 244 46999997754
No 440
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=95.64 E-value=0.024 Score=57.30 Aligned_cols=35 Identities=17% Similarity=0.397 Sum_probs=25.3
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcc
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGAL 208 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~ 208 (388)
|+|+|||+|.+|+-.|..|. ..|. ++++++|++.+
T Consensus 2 krVaVIGaG~sGL~a~k~l~--------------------e~g~-~~~~fE~~~~i 36 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLL--------------------EEGL-EVTCFEKSDDI 36 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHH--------------------HTT--EEEEEESSSSS
T ss_pred CEEEEECccHHHHHHHHHHH--------------------HCCC-CCeEEecCCCC
Confidence 79999999999999999775 2454 69999987653
No 441
>KOG2665|consensus
Probab=95.54 E-value=0.011 Score=54.20 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=36.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
...+|+||||||..|++.|..|.-+.++.+|.++|++..++
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 46799999999999999999998877899999999986543
No 442
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=95.53 E-value=0.15 Score=49.85 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=27.3
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
+|+|||+|+.|+-+|..|+ +.|. +|.++.|...
T Consensus 2 ~VvIVGaGPAG~~aA~~la--------------------~~G~-~V~llE~~~~ 34 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLA--------------------SAGI-QTFLLERKPD 34 (398)
T ss_pred eEEEECCcHHHHHHHHHHH--------------------hCCC-cEEEEecCCC
Confidence 6999999999999999876 3454 5999998754
No 443
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.52 E-value=0.046 Score=52.09 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=29.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
...++|+|||||-++...+..|.+..+..+|+++-|.+.
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG 226 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence 456899999999999999999999544468999988754
No 444
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.49 E-value=0.2 Score=48.56 Aligned_cols=46 Identities=11% Similarity=0.131 Sum_probs=32.6
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.|+++++++.++++..++ +.+ .+.+ .++..+.+|.||.|.|.....
T Consensus 126 ~g~~~~~~~~v~~i~~~~-~~~-~v~~--------~~g~~~~a~~vI~AdG~~S~v 171 (395)
T PRK05732 126 PGVTLHCPARVANVERTQ-GSV-RVTL--------DDGETLTGRLLVAADGSHSAL 171 (395)
T ss_pred CCcEEEcCCEEEEEEEcC-CeE-EEEE--------CCCCEEEeCEEEEecCCChhh
Confidence 578999999999887543 222 2332 334578999999999987643
No 445
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=95.49 E-value=0.013 Score=59.41 Aligned_cols=49 Identities=12% Similarity=0.074 Sum_probs=37.0
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
+.+++++.++.+++|..+ ++++.++++.++ ......+.++.||+|.|.-
T Consensus 206 r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~----~~~~~~~~ak~VIlaAGai 254 (532)
T TIGR01810 206 RPNLEVQTRAFVTKINFE-GNRATGVEFKKG----GRKEHTEANKEVILSAGAI 254 (532)
T ss_pred CCCeEEEeCCEEEEEEec-CCeEEEEEEEeC----CcEEEEEEeeeEEEccCCC
Confidence 567999999999999875 578888877432 1122346899999999974
No 446
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=95.48 E-value=0.087 Score=51.65 Aligned_cols=52 Identities=15% Similarity=0.110 Sum_probs=37.6
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.++++++++.++++..+ +++|.++...+. ..+....+.++.||+|||--..
T Consensus 153 ~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~---~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 153 EAGVDIRFNTRVTDLITE-DGRVTGVVAENP---ADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HTTEEEEESEEEEEEEEE-TTEEEEEEEEET---TTCEEEEEEESEEEE----BGG
T ss_pred hcCeeeeccceeeeEEEe-CCceeEEEEEEC---CCCeEEEEeeeEEEeccCcccc
Confidence 567999999999999885 579999988632 1355567899999999986554
No 447
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.46 E-value=0.082 Score=55.08 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=31.0
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLP 48 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~ 48 (388)
...++|+|||+|..|+.+|..+.+ .|. +|+++.+.+
T Consensus 321 ~~gk~VvVIGgG~~a~e~A~~l~~--~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 321 HPGKKVVVIGGGNTAIDAARTALR--LGAESVTILYRRT 357 (652)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHH--cCCCeEEEeeecC
Confidence 346899999999999999999998 776 599998764
No 448
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.45 E-value=0.026 Score=47.38 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=30.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEK 46 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~ 46 (388)
-..++|+|||||..|..-+..|.+ .|.+|+++++
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~--~ga~V~VIsp 44 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKD--TGAFVTVVSP 44 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcC
Confidence 356899999999999999999999 8999999963
No 449
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.39 E-value=0.028 Score=53.42 Aligned_cols=47 Identities=15% Similarity=0.225 Sum_probs=38.3
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDH 62 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~ 62 (388)
++|.|||.|+.|+..|..+++ .|.+|+++|..+.--..++.|..|-+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~--~GHeVv~vDid~~KV~~ln~g~~PI~ 47 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAE--LGHEVVCVDIDESKVELLNKGISPIY 47 (414)
T ss_pred CceEEECCchHHHHHHHHHHH--cCCeEEEEeCCHHHHHHHhCCCCCCc
Confidence 379999999999999999999 89999999987554345566665654
No 450
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.39 E-value=0.096 Score=53.79 Aligned_cols=49 Identities=16% Similarity=0.123 Sum_probs=37.3
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecc-eEEEccc-cC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSG-IAFRSIG-YQ 323 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D-~Vi~a~G-~~ 323 (388)
..|+++++++.++++..+++|+|.++.... .++...+.+. .||+||| |.
T Consensus 225 ~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~-----~~~~~~i~a~~aVilAtGGf~ 275 (584)
T PRK12835 225 DAGVPLWLDSPMTELITDPDGAVVGAVVER-----EGRTLRIGARRGVILATGGFD 275 (584)
T ss_pred hCCceEEeCCEEEEEEECCCCcEEEEEEEe-----CCcEEEEEeceeEEEecCccc
Confidence 568999999999999886668999987632 3444568887 5877776 44
No 451
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.27 E-value=0.095 Score=57.25 Aligned_cols=83 Identities=7% Similarity=0.049 Sum_probs=58.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
..++|+|||+|+.|+.+|..|.+ .|. .|+|+|..+.+ ...+.+.+++.+++++.++.+.
T Consensus 316 ~gk~VvViG~G~~g~e~A~~L~~--~G~~vV~vv~~~~~~------------------~~~l~~~L~~~GV~i~~~~~v~ 375 (985)
T TIGR01372 316 PGKRIVVATNNDSAYRAAADLLA--AGIAVVAIIDARADV------------------SPEARAEARELGIEVLTGHVVA 375 (985)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCceEEEEccCcch------------------hHHHHHHHHHcCCEEEcCCeEE
Confidence 35899999999999999999999 785 57899876332 1123345667789888776542
Q ss_pred E--------Eeeec----cc-ccccCEEEEeeCCCCC
Q psy4525 91 Q--------DISLG----DL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 91 ~--------~~~~~----~~-~~~yd~lvlAtG~~~~ 114 (388)
. .+++. +. ...+|.|+++.|..|.
T Consensus 376 ~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pn 412 (985)
T TIGR01372 376 ATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPV 412 (985)
T ss_pred EEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCch
Confidence 1 12222 11 2368999999998773
No 452
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=95.27 E-value=0.28 Score=48.96 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=36.3
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIG 321 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G 321 (388)
+.|+++++++.++++..+ ++++.++...+ ..++...+.++.||+|+|
T Consensus 143 ~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~----~~g~~~~i~a~~VIlAtG 189 (466)
T PRK08274 143 RLGVEIRYDAPVTALELD-DGRFVGARAGS----AAGGAERIRAKAVVLAAG 189 (466)
T ss_pred HCCCEEEcCCEEEEEEec-CCeEEEEEEEc----cCCceEEEECCEEEECCC
Confidence 568999999999999864 57788776532 134456789999999998
No 453
>PLN02785 Protein HOTHEAD
Probab=95.25 E-value=0.03 Score=57.43 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=31.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..+|++|||+|.||+.+|..|.+ +.+|+|+|+.+.
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~---~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ---NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc---CCcEEEEecCCC
Confidence 45899999999999999999998 489999999864
No 454
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.21 E-value=0.097 Score=54.62 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=30.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~~ 49 (388)
..++|+|||+|..|+.+|..+.+ .|. +|+++.+.+.
T Consensus 467 ~gk~VvVIGgG~~a~d~A~~a~r--~ga~~Vt~i~~~~~ 503 (654)
T PRK12769 467 AGLNVVVLGGGDTAMDCVRTALR--HGASNVTCAYRRDE 503 (654)
T ss_pred CCCeEEEECCcHHHHHHHHHHHH--cCCCeEEEeEecCC
Confidence 35799999999999999998888 776 6999887643
No 455
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.19 E-value=0.087 Score=52.43 Aligned_cols=48 Identities=21% Similarity=0.258 Sum_probs=37.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGV 58 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~ 58 (388)
....+++|||||-+|-..+..+++......|-++|.++..-|.--+|+
T Consensus 114 ~~~~r~lIiGAG~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g~~i~Gv 161 (588)
T COG1086 114 DNRIRLLIIGAGSAGDLLLRALRRDPEYTPVAFLDDDPDLTGMKIRGV 161 (588)
T ss_pred cCCCceEEEcCchHHHHHHHHHHhCCCcceEEEECCChhhcCCEEece
Confidence 345899999999999999999998644446778898877666655565
No 456
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.13 Score=48.10 Aligned_cols=86 Identities=14% Similarity=0.204 Sum_probs=58.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++|+|||||.+++..|..|.+ -..+|+++-|.+.+ ...+.+.+.+.+ ..++.++.++.+..
T Consensus 142 ~~k~v~ViGgG~sAve~Al~L~~--~a~~Vtlv~r~~~~------------ra~~~~~~~l~~---~~~i~~~~~~~i~e 204 (305)
T COG0492 142 KGKDVVVIGGGDSAVEEALYLSK--IAKKVTLVHRRDEF------------RAEEILVERLKK---NVKIEVLTNTVVKE 204 (305)
T ss_pred cCCeEEEEcCCHHHHHHHHHHHH--hcCeEEEEecCccc------------CcCHHHHHHHHh---cCCeEEEeCCceeE
Confidence 34699999999999999999999 78889999988543 222233333322 22677776655421
Q ss_pred -------Eeeeccc-----ccccCEEEEeeCCCCC
Q psy4525 92 -------DISLGDL-----TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 -------~~~~~~~-----~~~yd~lvlAtG~~~~ 114 (388)
.+.+.+. ...+|.++++.|..|+
T Consensus 205 i~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~ 239 (305)
T COG0492 205 ILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPN 239 (305)
T ss_pred EecCccceEEEEecCCceEEEEeceEEEecCCCCc
Confidence 2233221 2268999999998874
No 457
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=95.16 E-value=0.074 Score=54.21 Aligned_cols=53 Identities=11% Similarity=0.166 Sum_probs=38.9
Q ss_pred CceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 269 CSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 269 ~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
...|+++++++.++.+..+ ++++.++++.+. .++++.++.||.||.|+|.-..
T Consensus 160 ~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~---~~g~~~~i~A~~VVnAaG~wa~ 212 (546)
T PRK11101 160 KEHGAQILTYHEVTGLIRE-GDTVCGVRVRDH---LTGETQEIHAPVVVNAAGIWGQ 212 (546)
T ss_pred HhCCCEEEeccEEEEEEEc-CCeEEEEEEEEc---CCCcEEEEECCEEEECCChhHH
Confidence 4568999999999998764 467777765432 1344568999999999997543
No 458
>KOG1238|consensus
Probab=95.14 E-value=0.027 Score=56.77 Aligned_cols=39 Identities=26% Similarity=0.299 Sum_probs=34.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
...+|.+|||||.||+.+|..|.+. +..+|.++|+...+
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn-~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSEN-PNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccC-CCceEEEEecCCCC
Confidence 4569999999999999999999985 77999999988654
No 459
>KOG2853|consensus
Probab=95.08 E-value=0.043 Score=51.02 Aligned_cols=37 Identities=22% Similarity=0.194 Sum_probs=32.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhC--CCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLL--PQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~--~g~~v~lie~~~~ 49 (388)
.-+|+|||||-.|.+.|..|.++. .|++|+++|+.+.
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 468999999999999999999863 5799999999864
No 460
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=95.02 E-value=0.021 Score=56.33 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=28.3
Q ss_pred EECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 18 IVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 18 IIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
|||+|.||++||..+++ .|.+|+|+|+.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~--~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARR--AGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHh--CCCcEEEEeCCCC
Confidence 79999999999999999 8999999999874
No 461
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=94.96 E-value=0.38 Score=47.56 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=33.0
Q ss_pred eEEEEecCcceeeeeC-----CCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 272 YFRPIFLRSPTEFKLN-----DNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 272 gv~~~~~~~~~~i~~~-----~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
++++++++.++++..+ +++....+.+ .+++++.||+||-|-|.+...
T Consensus 134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~--------~~g~~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 134 NVKILNPARLISVTIPSKYPNDNSNWVHITL--------SDGQVLYTKLLIGADGSNSNV 185 (437)
T ss_pred CeEEecCCeeEEEEeccccccCCCCceEEEE--------cCCCEEEeeEEEEecCCCChh
Confidence 5999999999998642 1122223433 345689999999999988654
No 462
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.94 E-value=0.028 Score=43.54 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=30.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
+.++|+|||+|..|..-+..|.+ .|.+|+++.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~--~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLE--AGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCC--CTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCEEEEECCc
Confidence 46899999999999999999999 89999999866
No 463
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=94.85 E-value=0.39 Score=50.23 Aligned_cols=59 Identities=10% Similarity=0.133 Sum_probs=39.0
Q ss_pred eEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC--CCCcccCCCccc
Q psy4525 272 YFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD--SDIPFNEKSCTV 340 (388)
Q Consensus 272 gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~--~~l~~~~~~gi~ 340 (388)
|+++++++.++++...+ +.+. +. +.++..+.||.||+|+|.....+. ..+|+...+|.+
T Consensus 421 Gv~i~~~~~V~~i~~~~-~~~~-v~--------t~~g~~~~ad~VV~A~G~~s~~l~~~~~lpl~p~RGqv 481 (662)
T PRK01747 421 QLTIHFGHEVARLERED-DGWQ-LD--------FAGGTLASAPVVVLANGHDAARFAQTAHLPLYSVRGQV 481 (662)
T ss_pred CcEEEeCCEeeEEEEeC-CEEE-EE--------ECCCcEEECCEEEECCCCCccccccccCCCcccccceE
Confidence 89999998888887543 3332 32 344556789999999998765442 235555555544
No 464
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=94.82 E-value=0.057 Score=47.33 Aligned_cols=56 Identities=13% Similarity=0.173 Sum_probs=36.4
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccC----ccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQ----QALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~----~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.|+++.....+..+...++++|.++...-. ...-. +--.+.+..||=|||...+.
T Consensus 108 ~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHv-DPl~i~ak~ViDaTGHda~v 167 (230)
T PF01946_consen 108 DAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHV-DPLTIRAKVVIDATGHDAEV 167 (230)
T ss_dssp TTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T--B-EEEEESEEEE---SSSSS
T ss_pred cCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCC-CcceEEEeEEEeCCCCchHH
Confidence 5899999998888887654579999877611 00001 22478999999999988754
No 465
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=94.79 E-value=0.42 Score=49.35 Aligned_cols=49 Identities=16% Similarity=0.050 Sum_probs=37.5
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
.+|++++++.++++..+++++|.++...+. .++....+.|+.||+|||=
T Consensus 146 ~gV~i~~~t~v~~Li~dd~grV~GV~~~~~---~~g~~~~i~AkaVVLATGG 194 (603)
T TIGR01811 146 GLVEKYEGWEMLDIIVVDGNRARGIIARNL---VTGEIETHSADAVILATGG 194 (603)
T ss_pred CCcEEEeCcEEEEEEEcCCCEEEEEEEEEC---CCCcEEEEEcCEEEECCCC
Confidence 479999999999998755578888876431 1233457899999999985
No 466
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=94.76 E-value=0.071 Score=54.53 Aligned_cols=93 Identities=13% Similarity=0.165 Sum_probs=62.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
+..++-+|||+|.-|+.+|..|.. .|.++++++-.+.+ +. ......--..++..+++.|++++++..+.
T Consensus 143 r~~~~avVIGGGLLGlEaA~~L~~--~Gm~~~Vvh~~~~l--Me-------rQLD~~ag~lL~~~le~~Gi~~~l~~~t~ 211 (793)
T COG1251 143 RNKKKAVVIGGGLLGLEAARGLKD--LGMEVTVVHIAPTL--ME-------RQLDRTAGRLLRRKLEDLGIKVLLEKNTE 211 (793)
T ss_pred hccCCcEEEccchhhhHHHHHHHh--CCCceEEEeecchH--HH-------HhhhhHHHHHHHHHHHhhcceeecccchh
Confidence 445668999999999999999999 89999999855321 10 01112222334556677888888765432
Q ss_pred E--------Eeeeccccc-ccCEEEEeeCCCCC
Q psy4525 91 Q--------DISLGDLTN-AYHAVVLTYGADND 114 (388)
Q Consensus 91 ~--------~~~~~~~~~-~yd~lvlAtG~~~~ 114 (388)
. .+...++.. .+|-||+|+|..|.
T Consensus 212 ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn 244 (793)
T COG1251 212 EIVGEDKVEGVRFADGTEIPADLVVMAVGIRPN 244 (793)
T ss_pred hhhcCcceeeEeecCCCcccceeEEEecccccc
Confidence 1 133344433 79999999998873
No 467
>PRK06175 L-aspartate oxidase; Provisional
Probab=94.76 E-value=0.45 Score=47.02 Aligned_cols=47 Identities=15% Similarity=0.000 Sum_probs=34.6
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
..||++++++.++++..+ ++++.++.... .++...+.|+.||+|||-
T Consensus 141 ~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~-----~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 141 RKNITIIENCYLVDIIEN-DNTCIGAICLK-----DNKQINIYSKVTILATGG 187 (433)
T ss_pred cCCCEEEECcEeeeeEec-CCEEEEEEEEE-----CCcEEEEEcCeEEEccCc
Confidence 358999999999998764 46777764321 233347899999999995
No 468
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=94.73 E-value=0.44 Score=47.84 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=36.8
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
.+|++++++.++++..+ ++.+.++...+ .+....+.++.||+|||-...
T Consensus 142 ~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~-----~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 142 PNIRIIEGENALDLLIE-TGRVVGVWVWN-----RETVETCHADAVVLATGGAGK 190 (488)
T ss_pred CCcEEEECeEeeeeecc-CCEEEEEEEEE-----CCcEEEEEcCEEEECCCcccC
Confidence 58999999999999764 46777776532 123357899999999997543
No 469
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=94.70 E-value=0.2 Score=49.00 Aligned_cols=43 Identities=9% Similarity=-0.050 Sum_probs=30.7
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
+.|+++++++.++++..++ + ...++. ++.++.+|.||+|+|..
T Consensus 117 ~~gv~i~~~~~V~~i~~~~-~-~~~v~~---------~~~~i~ad~VIlAtG~~ 159 (400)
T TIGR00275 117 ELGVEILTNSKVKSIKKDD-N-GFGVET---------SGGEYEADKVILATGGL 159 (400)
T ss_pred HCCCEEEeCCEEEEEEecC-C-eEEEEE---------CCcEEEcCEEEECCCCc
Confidence 5689999999999987533 2 223322 23468999999999964
No 470
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=94.68 E-value=0.047 Score=53.15 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=36.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
..+|||+||||..|.+++..|++..+..+|.||||.+.++
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A 41 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVA 41 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcch
Confidence 3579999999999999999999988999999999987654
No 471
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.68 E-value=0.08 Score=54.21 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=29.8
Q ss_pred CCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 150 LDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 150 ~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
..+++|+|||+|.+|+-+|..|. ..|. +|+++.+.+.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~--------------------~~G~-~V~v~e~~~~ 171 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLR--------------------RMGH-AVTIFEAGPK 171 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH--------------------HCCC-eEEEEecCCC
Confidence 35789999999999999999775 3454 5999987653
No 472
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=94.65 E-value=0.49 Score=46.00 Aligned_cols=51 Identities=4% Similarity=0.077 Sum_probs=31.6
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
..++.++++..++.+...++.. ..+.+.. .++..++.+|+||-|-|.+...
T Consensus 115 ~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~-----~g~~~~i~adlvIGADG~~S~V 165 (390)
T TIGR02360 115 AAGLTTVYDADDVRLHDLAGDR-PYVTFER-----DGERHRLDCDFIAGCDGFHGVS 165 (390)
T ss_pred hcCCeEEEeeeeEEEEecCCCc-cEEEEEE-----CCeEEEEEeCEEEECCCCchhh
Confidence 3477888888877775322122 2344320 2333579999999999987643
No 473
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.62 E-value=0.18 Score=51.86 Aligned_cols=52 Identities=8% Similarity=-0.016 Sum_probs=37.6
Q ss_pred ceeEEEEecCcceeeeeCCC---CceeEEEEccCccccCCceeEEecceEEEccccCC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDN---GAITGINFANQQALVTEDTELIPSGIAFRSIGYQS 324 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~---~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p 324 (388)
+.||++++++.++++..+++ +++.++...+. .++....+.++.||+|||-..
T Consensus 152 ~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~---~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 152 KHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYEL---ATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred hcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEc---CCCeEEEEEeCeEEECCCCCc
Confidence 56899999999999876442 78888865221 123334789999999999654
No 474
>KOG4716|consensus
Probab=94.62 E-value=0.04 Score=51.16 Aligned_cols=90 Identities=12% Similarity=0.125 Sum_probs=62.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEE-
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICL- 89 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v- 89 (388)
..+-+-+|||||..+|.||-.|.- -|++|++.=|+-.+ .-..+++.+...+.++..|+.|......
T Consensus 196 ~~PGkTLvVGa~YVaLECAgFL~g--fg~~vtVmVRSI~L-----------rGFDqdmae~v~~~m~~~Gikf~~~~vp~ 262 (503)
T KOG4716|consen 196 YEPGKTLVVGAGYVALECAGFLKG--FGYDVTVMVRSILL-----------RGFDQDMAELVAEHMEERGIKFLRKTVPE 262 (503)
T ss_pred CCCCceEEEccceeeeehhhhHhh--cCCCcEEEEEEeec-----------ccccHHHHHHHHHHHHHhCCceeecccce
Confidence 455678899999999999999999 89999988776211 1224567777777788888888754322
Q ss_pred --EE------------EeeecccccccCEEEEeeCCCC
Q psy4525 90 --GQ------------DISLGDLTNAYHAVVLTYGADN 113 (388)
Q Consensus 90 --~~------------~~~~~~~~~~yd~lvlAtG~~~ 113 (388)
.. ..+.++.+..||.|++|.|..+
T Consensus 263 ~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~ 300 (503)
T KOG4716|consen 263 RVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKA 300 (503)
T ss_pred eeeeccCCcEEEEeecccccccccchhhhhhhhhcccc
Confidence 11 0111223458999999999544
No 475
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.52 E-value=0.052 Score=45.57 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=29.2
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
+|+|||||..|.++|..|.. .|.+|+++.++
T Consensus 1 KI~ViGaG~~G~AlA~~la~--~g~~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD--NGHEVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH--CTEEEEEETSC
T ss_pred CEEEECcCHHHHHHHHHHHH--cCCEEEEEecc
Confidence 58999999999999999999 89999999976
No 476
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.51 E-value=0.069 Score=46.96 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=31.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
..++|+|||||..|...+..|.+ .|.+|+|++..
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~--~ga~VtVvsp~ 41 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLK--AGAQLRVIAEE 41 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHH--CCCEEEEEcCC
Confidence 45799999999999999999999 89999999865
No 477
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=94.46 E-value=0.42 Score=47.46 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=27.9
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
-+|+|||||+.|.-+|..|+ +.|. +|.+++|...
T Consensus 40 ~DViIVGaGPAG~~aA~~LA--------------------~~G~-~VlllEr~~~ 73 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLA--------------------KGGI-ETFLIERKLD 73 (450)
T ss_pred CeEEEECCCHHHHHHHHHHH--------------------hCCC-cEEEEecCCC
Confidence 47999999999999999876 3554 5999998754
No 478
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=94.43 E-value=0.54 Score=48.22 Aligned_cols=50 Identities=8% Similarity=-0.010 Sum_probs=36.8
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
+.|+++++++.++++..+ ++++.++...+. ..+....+.|+.||+|||-.
T Consensus 141 ~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~---~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 141 KLGVSFFNEYFALDLIHD-DGRVRGVVAYDL---KTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred HcCCEEEeccEEEEEEEe-CCEEEEEEEEEC---CCCcEEEEECCeEEECCCcc
Confidence 458999999999999765 578888765321 12333578999999999953
No 479
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=94.43 E-value=0.24 Score=51.19 Aligned_cols=46 Identities=9% Similarity=-0.046 Sum_probs=33.3
Q ss_pred eEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccc
Q psy4525 272 YFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIG 321 (388)
Q Consensus 272 gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G 321 (388)
++++++++.++++..+ ++++.++...+. .+++...+.|+.||+|||
T Consensus 147 gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~---~~g~~~~i~AkaVILATG 192 (608)
T PRK06854 147 GDNVLNRVFITDLLVD-DNRIAGAVGFSV---RENKFYVFKAKAVIVATG 192 (608)
T ss_pred CCEEEeCCEEEEEEEe-CCEEEEEEEEEc---cCCcEEEEECCEEEECCC
Confidence 4999999999998754 467777653211 123345789999999999
No 480
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=94.38 E-value=0.15 Score=54.08 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=27.2
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCC-CcEEEEEeecCc
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSR-IKSVNLVGRRGA 207 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~-~~~V~~i~r~~~ 207 (388)
+|+|||||.+|+=+|..|+ +.+ ..+|+++++...
T Consensus 2 ~V~IIGaGpAGLaaAi~L~--------------------~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMK--------------------LLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHH--------------------HhCCCCeEEEEecCCC
Confidence 6999999999999998775 221 357999998865
No 481
>PRK08275 putative oxidoreductase; Provisional
Probab=94.36 E-value=0.7 Score=47.21 Aligned_cols=51 Identities=12% Similarity=-0.014 Sum_probs=37.6
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
+.|+++++++.++++..++++++.++...+. ..++...+.++.||+|||-.
T Consensus 149 ~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~---~~g~~~~i~Ak~VIlATGG~ 199 (554)
T PRK08275 149 RARVLITNRIMATRLLTDADGRVAGALGFDC---RTGEFLVIRAKAVILCCGAA 199 (554)
T ss_pred HCCCEEEcceEEEEEEEcCCCeEEEEEEEec---CCCcEEEEECCEEEECCCCc
Confidence 4689999999999998754577887764221 12334578999999999975
No 482
>PRK07804 L-aspartate oxidase; Provisional
Probab=94.32 E-value=0.38 Score=49.00 Aligned_cols=54 Identities=7% Similarity=0.032 Sum_probs=36.8
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
+.+|++++++.++++..++++++.++...+...-..+....+.++.||+|||-.
T Consensus 156 ~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~ 209 (541)
T PRK07804 156 ADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGL 209 (541)
T ss_pred hCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCC
Confidence 456999999999999865556888876531000001222578999999999854
No 483
>KOG2852|consensus
Probab=94.29 E-value=0.022 Score=51.72 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=33.0
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhC----CCCcEEEEcCCCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLL----PQSTVDIYEKLPVPF 51 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~----~g~~v~lie~~~~~g 51 (388)
.+.++|+|||||..|+.+|.+|.+.. ....|++||+....|
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ 52 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAG 52 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccc
Confidence 45689999999999999999999941 126899999875443
No 484
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=94.24 E-value=0.11 Score=51.61 Aligned_cols=45 Identities=9% Similarity=0.098 Sum_probs=29.0
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
..++.+.-. .+.++..+++.+|.++. +..|..+.|+.||++||.-
T Consensus 113 ~~NL~l~q~-~v~dli~e~~~~v~GV~--------t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 113 QPNLHLLQG-EVEDLIVEEGQRVVGVV--------TADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred CCCceehHh-hhHHHhhcCCCeEEEEE--------eCCCCeeecCEEEEeeccc
Confidence 446666433 34444443333577775 5667799999999999953
No 485
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.21 E-value=0.28 Score=50.51 Aligned_cols=50 Identities=18% Similarity=0.126 Sum_probs=35.9
Q ss_pred eEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCC
Q psy4525 272 YFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQS 324 (388)
Q Consensus 272 gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p 324 (388)
+|+++.++.++++..+++++|.++...+. .++....+.++.||+|||--.
T Consensus 151 ~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~~~i~AkaVILATGG~~ 200 (589)
T PRK08641 151 LVTKYEGWEFLGAVLDDEGVCRGIVAQDL---FTMEIESFPADAVIMATGGPG 200 (589)
T ss_pred CcEEEeeEEEEEEEECCCCEEEEEEEEEC---CCCcEEEEECCEEEECCCCCc
Confidence 38888888888887655678988876431 123345789999999998543
No 486
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=94.17 E-value=0.41 Score=49.69 Aligned_cols=72 Identities=13% Similarity=0.236 Sum_probs=41.4
Q ss_pred hhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCC-ceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 249 RKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNG-AITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~-~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.++.+.|...+... ..++.++++..++.+..++++ .-..+.+.+.....++..+++.||.||-|=|.+...
T Consensus 140 Q~~le~~L~~~l~~~------g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~V 212 (634)
T PRK08294 140 QARVHDYFLDVMRNS------PTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRV 212 (634)
T ss_pred HHHHHHHHHHHHHhc------CCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHH
Confidence 455556665544210 124688889999988754322 223344432100002334689999999999988654
No 487
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.13 E-value=0.18 Score=46.13 Aligned_cols=36 Identities=19% Similarity=0.498 Sum_probs=31.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCC-CcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQ-STVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g-~~v~lie~~~~ 49 (388)
...+|+|||+|-.|..+|..|.+ .| .+++|+|....
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar--~GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALAR--TGIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHH--cCCCEEEEEeCCEe
Confidence 45799999999999999999999 88 58999997643
No 488
>PRK13984 putative oxidoreductase; Provisional
Probab=94.12 E-value=0.16 Score=52.45 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=29.7
Q ss_pred CCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 150 LDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 150 ~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
..+++|+|||+|..|+.+|..|. +.+ .+|+++.+.+.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~--------------------~~G-~~v~vie~~~~ 317 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLA--------------------TMG-YEVTVYESLSK 317 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHH--------------------HCC-CeEEEEecCCC
Confidence 35789999999999999999776 244 36999987754
No 489
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.96 E-value=0.33 Score=49.96 Aligned_cols=51 Identities=12% Similarity=0.038 Sum_probs=38.3
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
+.++++++++.++++..+++++|.++...+. ..+....+.++.||+|||--
T Consensus 155 ~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~~~i~AkaVILATGG~ 205 (588)
T PRK08958 155 KNHTTIFSEWYALDLVKNQDGAVVGCTAICI---ETGEVVYFKARATVLATGGA 205 (588)
T ss_pred hcCCEEEeCcEEEEEEECCCCEEEEEEEEEc---CCCcEEEEEcCeEEECCCCc
Confidence 4689999999999988754688888875321 13445678999999999843
No 490
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.79 E-value=0.051 Score=46.99 Aligned_cols=87 Identities=10% Similarity=0.069 Sum_probs=46.3
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEEe
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQDI 93 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~~ 93 (388)
++|.|||.|..|+.+|..+++ .|++|+.+|.++..-..++.|..|.+. ..+.+.+.+..+..++.+..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~--~G~~V~g~D~~~~~v~~l~~g~~p~~E--~~l~~ll~~~~~~~~l~~t~-------- 68 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAE--KGHQVIGVDIDEEKVEALNNGELPIYE--PGLDELLKENVSAGRLRATT-------- 68 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHH--TTSEEEEE-S-HHHHHHHHTTSSSS-C--TTHHHHHHHHHHTTSEEEES--------
T ss_pred CEEEEECCCcchHHHHHHHHh--CCCEEEEEeCChHHHHHHhhccccccc--cchhhhhccccccccchhhh--------
Confidence 479999999999999999999 999999999876543344555534331 12333334444333332211
Q ss_pred eecccccccCEEEEeeCCC
Q psy4525 94 SLGDLTNAYHAVVLTYGAD 112 (388)
Q Consensus 94 ~~~~~~~~yd~lvlAtG~~ 112 (388)
.....-..+|.++||.+..
T Consensus 69 ~~~~ai~~adv~~I~VpTP 87 (185)
T PF03721_consen 69 DIEEAIKDADVVFICVPTP 87 (185)
T ss_dssp EHHHHHHH-SEEEE----E
T ss_pred hhhhhhhccceEEEecCCC
Confidence 1111123689999999843
No 491
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.74 E-value=0.14 Score=41.78 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=31.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCc-EEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQST-VDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~-v~lie~~ 47 (388)
..++++|||+|-+|-.++.+|.. .|.+ ++++.|.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~--~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAA--LGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHH--TTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHH--cCCCEEEEEECC
Confidence 56899999999999999999999 7876 9999986
No 492
>KOG3851|consensus
Probab=93.68 E-value=0.032 Score=51.42 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=26.8
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
-+|+|||||.-|+-+|..+. ++.+..+|-++...+
T Consensus 40 ~kvLVvGGGsgGi~~A~k~~-------------------rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 40 FKVLVVGGGSGGIGMAAKFY-------------------RKLGSGSVGIVEPAE 74 (446)
T ss_pred eEEEEEcCCcchhHHHHHHH-------------------hhcCCCceEEecchh
Confidence 47999999999999999765 234445788887654
No 493
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.62 E-value=0.12 Score=45.27 Aligned_cols=34 Identities=24% Similarity=0.200 Sum_probs=30.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
..++|+|||||..|...+..|.+ .|.+|+++++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~--~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLK--YGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEcCC
Confidence 46899999999999999999999 89999999854
No 494
>KOG2404|consensus
Probab=93.58 E-value=0.27 Score=45.51 Aligned_cols=48 Identities=10% Similarity=0.270 Sum_probs=38.2
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
...+++..++.+++|.. .+|+|.+++..+. .++...+.+|.||+|+|-
T Consensus 157 pe~~ki~~nskvv~il~-n~gkVsgVeymd~----sgek~~~~~~~VVlatGG 204 (477)
T KOG2404|consen 157 PELVKILLNSKVVDILR-NNGKVSGVEYMDA----SGEKSKIIGDAVVLATGG 204 (477)
T ss_pred hHHHhhhhcceeeeeec-CCCeEEEEEEEcC----CCCccceecCceEEecCC
Confidence 45689999999999995 4699999988653 456667888988888873
No 495
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.53 E-value=0.34 Score=49.63 Aligned_cols=48 Identities=10% Similarity=-0.020 Sum_probs=36.7
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIG 321 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G 321 (388)
..||++++++.++++..+ +|+|.++...+. .++....+.++.||+|||
T Consensus 148 ~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~---~~g~~~~i~AkaVVLATG 195 (566)
T PRK06452 148 GLNVDFYNEWFSLDLVTD-NKKVVGIVAMQM---KTLTPFFFKTKAVVLATG 195 (566)
T ss_pred hCCCEEEeCcEEEEEEEE-CCEEEEEEEEEC---CCCeEEEEEeCeEEECCC
Confidence 458999999999999874 588988876431 123345789999999999
No 496
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.47 E-value=0.12 Score=44.54 Aligned_cols=32 Identities=25% Similarity=0.503 Sum_probs=27.6
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
+|.|||+|..|...|..+.. .|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR--AGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH--TTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHh--CCCcEEEEECCh
Confidence 58999999999999999999 899999999863
No 497
>PTZ00367 squalene epoxidase; Provisional
Probab=93.46 E-value=1.1 Score=45.78 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=27.9
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
.-+|+|||||..|+-+|..|+ +.| .+|++++|..
T Consensus 33 ~~dViIVGaGiaGlalA~aLa--------------------r~G-~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALS--------------------KQG-RKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHH--------------------hcC-CEEEEEcccc
Confidence 357999999999999999876 344 4799999875
No 498
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=93.45 E-value=1.5 Score=45.59 Aligned_cols=35 Identities=11% Similarity=0.021 Sum_probs=28.9
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
+..+|+|||||..|+=+|..|. +.|. +|++++|.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~--------------------r~Gi-~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAK--------------------KKGF-DVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHH--------------------hcCC-eEEEEeccc
Confidence 4578999999999999999876 3554 699999865
No 499
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.40 E-value=0.53 Score=48.95 Aligned_cols=49 Identities=16% Similarity=0.106 Sum_probs=37.2
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
+.||++++++.++++..+ +++|.++...+. .++....+.|+.||+|||-
T Consensus 182 ~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~---~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 182 AGTVKMYTRTEMLDLVVV-DGRARGIVARNL---VTGEIERHTADAVVLATGG 230 (640)
T ss_pred hcCCEEEeceEEEEEEEe-CCEEEEEEEEEC---CCCcEEEEECCEEEECCCC
Confidence 468999999999998764 478888876431 1233457899999999995
No 500
>KOG3855|consensus
Probab=93.34 E-value=0.098 Score=49.96 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=29.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhC--CCCcEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLL--PQSTVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~--~g~~v~lie~~ 47 (388)
.++|+|+||||.|++.|..|.... ...++.++|..
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 689999999999999999998642 34689999977
Done!