RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4525
(388 letters)
>gnl|CDD|215457 PLN02852, PLN02852, ferredoxin-NADP+ reductase.
Length = 491
Score = 363 bits (933), Expect = e-122
Identities = 181/475 (38%), Positives = 247/475 (52%), Gaps = 96/475 (20%)
Query: 7 STISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVK 66
S+ + +VC+VGSGPAGFY A ++LK + VDI E+LP PFGLVR GVAPDHPE K
Sbjct: 20 SSSTSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETK 79
Query: 67 NVINTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKN 126
NV N F++ + RV+F+GN+ LG+D+SL +L + YH VVL YGA++D++L IPGED
Sbjct: 80 NVTNQFSRVATDDRVSFFGNVTLGRDVSLSELRDLYHVVVLAYGAESDRRLGIPGEDLPG 139
Query: 127 IISARSFVGWYNGLPEDASL--DLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDIT 184
++SAR FV WYNG P+ L DL + A +LGQGNVA+D ARILL P D+L STDI
Sbjct: 140 VLSAREFVWWYNGHPDCVHLPPDLKSS-DTAVVLGQGNVALDCARILLRPTDELASTDIA 198
Query: 185 EHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASAT 244
EH+LE L S ++ V LVGRRG +Q A T KE RE+ L +V+ + L E
Sbjct: 199 EHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEE 258
Query: 245 LA--RPRKRLTELILKT-SNPDESKSNCSKYFRPIFLRSPTEFKLND--NGAITGINF-- 297
L RP++R+ EL+ K + + S + +F R+PT F + NG + G+
Sbjct: 259 LKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLER 318
Query: 298 --------ANQQALV-TEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTVIP------ 342
+ +Q V T + E +P G+ +SIGY+S VD +PF+ K V+P
Sbjct: 319 TVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDG-LPFDHKR-GVVPNVHGRV 376
Query: 343 ---------KEGVPVVTWE--------GWKAIDKEET--------ERGKLK--------- 368
+ G+ VV W G EET E+G+L+
Sbjct: 377 LSSASGADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAEDLEQGRLRGVASPPKPG 436
Query: 369 -----------------------------------GKPREKIISIEEMISVSGNS 388
GKPREKI SIEEM+ +
Sbjct: 437 RDGLLELLESRGVRVVPFSGWEKIDSAEKEAGRARGKPREKITSIEEMLKAANEK 491
>gnl|CDD|240308 PTZ00188, PTZ00188, adrenodoxin reductase; Provisional.
Length = 506
Score = 165 bits (418), Expect = 3e-46
Identities = 108/331 (32%), Positives = 167/331 (50%), Gaps = 43/331 (12%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKT 75
V I+G+GP+ YC + +LK + VDI+EKLP P+GL+RYGVAPDH VKN TF
Sbjct: 42 VGIIGAGPSALYCCKHLLKH-ERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPV 100
Query: 76 GDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGA----------DNDKKLNIPGEDGK 125
+P F+GN+ +G D+ + +L N Y+ V+ GA D DK ++ + +
Sbjct: 101 FLSPNYRFFGNVHVGVDLKMEELRNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPR 160
Query: 126 N---IISARSFVGWYNGLPEDA---SLDLSLDCEE----ATILGQGNVAMDVARILLSPV 175
I AR + +YN + D ++D L+ E + I+G GNV++D+ARIL+
Sbjct: 161 KQNGIFHARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSP 220
Query: 176 DQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVF--RNE 233
D L TDI+ L+ + IK + +VGRRG Q +FT E RE+ L + + + +N
Sbjct: 221 DDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELRELISLENTKVILSKKNY 280
Query: 234 QLCGVHEASATLARPRKRLTELILK-TSNPDESKSNCSKY----------------FRPI 276
LC ++ +KR E+ K N +E + N Y RPI
Sbjct: 281 DLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQIRPI 340
Query: 277 --FLRSPTEFKLNDNGAITGINFANQQALVT 305
+++ E +LN N ++ +F + LVT
Sbjct: 341 DGAMKN-VELELNKNVPMSFSSFKENKVLVT 370
>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
related oxidoreductases [Amino acid transport and
metabolism / General function prediction only].
Length = 457
Score = 111 bits (280), Expect = 3e-27
Identities = 54/205 (26%), Positives = 80/205 (39%), Gaps = 10/205 (4%)
Query: 18 IVGSGP-AGFYCAQQILKLLP--QSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTK 74
+VGSGP A Y A + L + ++ +P P GLVR GV DH +K + T
Sbjct: 10 VVGSGPEAAIYEAARCLDCGDPCITGCPVHNDIPEPIGLVREGV--DHEAIKLIHKTNNL 67
Query: 75 TGDNPRVNFYGNICLGQDISL-GDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSF 133
RV GN+C G + +L A+ G D++ IPGE +
Sbjct: 68 PAITGRVCPLGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGELPGSRT--GKK 125
Query: 134 VGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLST 193
V P + L + VA+D +L D DI + LE L
Sbjct: 126 VAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLER 185
Query: 194 SRIKSVNLVGRRGA-LQVAFTIKEF 217
S ++ L R G + + +KE+
Sbjct: 186 SGVE-FKLNVRVGRDITLEELLKEY 209
Score = 84.6 bits (210), Expect = 6e-18
Identities = 49/163 (30%), Positives = 78/163 (47%), Gaps = 18/163 (11%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNV----INT 71
V ++G+GPAG A + + V ++E++ + GL+ YG+ PD K++ +
Sbjct: 126 VAVIGAGPAGLAAADDLSRA--GHDVTVFERVALDGGLLLYGI-PDFKLPKDILDRRLEL 182
Query: 72 FTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISAR 131
++G V F N+ +G+DI+L +L Y AV L GA + L+IPGED K + A
Sbjct: 183 LERSG----VEFKLNVRVGRDITLEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFAL 238
Query: 132 SFVGWYNGLPEDASLDLSLDCEEAT-----ILGQGNVAMDVAR 169
F+ N E A ++G G+ AMD A
Sbjct: 239 DFLTRLNK--EVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAG 279
>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A;
Provisional.
Length = 457
Score = 87.5 bits (218), Expect = 6e-19
Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 20/161 (12%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPE---VKNV---- 68
V ++G+GPAG A ++ + V I+E GL+RYG+ PE K++
Sbjct: 143 VAVIGAGPAGLTAAHRLARKGYD--VTIFEARDKAGGLLRYGI----PEFRLPKDIVDRE 196
Query: 69 INTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNII 128
+ K G V N +G+DI+L +L Y AV + GA + L IPGE+ +
Sbjct: 197 VERLLKLG----VEIRTNTEVGRDITLDELRAGYDAVFIGTGAGLPRFLGIPGENLGGVY 252
Query: 129 SARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVAR 169
SA F+ N D L + + ++G GN AMD AR
Sbjct: 253 SAVDFLTRVNQAVADYDLPVG---KRVVVIGGGNTAMDAAR 290
>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small
subunit; Provisional.
Length = 564
Score = 84.2 bits (209), Expect = 1e-17
Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 25/162 (15%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDH--P------EVKN 67
V ++G GPAG A L+ + + V I+E P G++RYG+ P + P E++
Sbjct: 140 VAVIGGGPAGLSAAYH-LRRMGHA-VTIFEAGPKLGGMMRYGI-PAYRLPREVLDAEIQR 196
Query: 68 VINTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNI 127
+++ + RV G+DI+L L + AV + GA K+L IPGED +
Sbjct: 197 ILDLGVEVRLGVRV--------GEDITLEQLEGEFDAVFVAIGAQLGKRLPIPGEDAAGV 248
Query: 128 ISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVAR 169
+ A F+ + ++G GN AMD AR
Sbjct: 249 LDAVDFLRAV----GEGEPPFLGK--RVVVIGGGNTAMDAAR 284
>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric. This
protein is homologous to the small subunit of NADPH and
NADH forms of glutamate synthase as found in eukaryotes
and some bacteria. This protein is found in numerous
species having no homolog of the glutamate synthase
large subunit. The prototype of the family, from
Pyrococcus sp. KOD1, was shown to be active as a
homotetramer and to require NADPH [Amino acid
biosynthesis, Glutamate family].
Length = 449
Score = 78.8 bits (194), Expect = 6e-16
Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 6/157 (3%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKT 75
V ++G+GPAG CA ++ K +V ++E L P G+V YG+ P+ K ++ T KT
Sbjct: 136 VAVIGAGPAGLACASELAKA--GHSVTVFEALHKPGGVVTYGI-PEFRLPKEIVVTEIKT 192
Query: 76 GDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVG 135
V F N +G+ +L +L + Y AV + GA K +NIPGE+ + SA F+
Sbjct: 193 LKKLGVTFRMNFLVGKTATLEELFSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLT 252
Query: 136 WYNGLP--EDASLDLSLDCEEAT-ILGQGNVAMDVAR 169
N + E D + ++ ++G GN A+D AR
Sbjct: 253 RANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSAR 289
>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional.
Length = 604
Score = 78.3 bits (193), Expect = 1e-15
Identities = 54/162 (33%), Positives = 76/162 (46%), Gaps = 20/162 (12%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVA----PDHPEVKNVINT 71
V IVGSGPAG A + + + V +YE L P G++RYG+ PD K+ I
Sbjct: 286 VAIVGSGPAGLSAAYFLATMGYE--VTVYESLSKPGGVMRYGIPSYRLPDEALDKD-IAF 342
Query: 72 FTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISA- 130
G V + N +G+DI L +L + AV L+ G + IPG D ++I A
Sbjct: 343 IEALG----VKIHLNTRVGKDIPLEELREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQAL 398
Query: 131 ---RSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVAR 169
R + G + SL ++G GNVAMD+AR
Sbjct: 399 PLLREIRDYLRGEGPKPKIPRSL-----VVIGGGNVAMDIAR 435
>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family
protein, proteobacterial. This model represents one of
three built for the NADPH-dependent or NADH-dependent
glutamate synthase (EC 1.4.1.13 and 1.4.1.14,
respectively) small subunit and homologs. TIGR01317
describes the small subunit (or equivalent region from
longer forms) in eukaryotes, Gram-positive bacteria, and
some other lineages, both NADH and NADPH-dependent.
TIGR01316 describes a protein of similar length, from
Archaea and a number of bacterial lineages, that forms
glutamate synthase homotetramers without a large
subunit. This model describes both glutatate synthase
small subunit and closely related paralogs of unknown
function from a number of gamma and alpha subdivision
Proteobacteria, including E. coli.
Length = 467
Score = 76.0 bits (187), Expect = 5e-15
Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 19/173 (10%)
Query: 9 ISQLKPN---VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEV 65
+S + P V ++G+GPAG CA + + Q V ++++ P GL+ +G+ +
Sbjct: 134 LSHVVPTGKRVAVIGAGPAGLACADILARAGVQ--VVVFDRHPEIGGLLTFGIPSFKLD- 190
Query: 66 KNVI----NTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPG 121
K V+ FT G + F+ N +G+DISL DL Y AV L G + +PG
Sbjct: 191 KAVLSRRREIFTAMG----IEFHLNCEVGRDISLDDLLEDYDAVFLGVGTYRSMRGGLPG 246
Query: 122 EDGKNIISARSFVGWYN----GLPEDASLDL-SLDCEEATILGQGNVAMDVAR 169
ED ++ A F+ GLPE L ++ + +LG G+ AMD R
Sbjct: 247 EDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVR 299
>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed.
Length = 471
Score = 75.6 bits (187), Expect = 6e-15
Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 17/125 (13%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVK-------NV 68
V +VGSGPAG A Q+ + + TV +E+ GL+RYG+ P+ K
Sbjct: 146 VAVVGSGPAGLAAADQLARAGHKVTV--FERADRIGGLLRYGI----PDFKLEKEVIDRR 199
Query: 69 INTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNII 128
I G + F N+ +G+DI+ +L Y AV L GA + L IPG D +
Sbjct: 200 IELMEAEG----IEFRTNVEVGKDITAEELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVH 255
Query: 129 SARSF 133
A F
Sbjct: 256 FAMDF 260
>gnl|CDD|183762 PRK12809, PRK12809, putative oxidoreductase Fe-S binding subunit;
Reviewed.
Length = 639
Score = 75.8 bits (186), Expect = 7e-15
Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 8/168 (4%)
Query: 7 STISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVK 66
S + V ++G+GPAG CA + + Q VD++++ P G++ +G+ P + K
Sbjct: 304 SKVVPRSEKVAVIGAGPAGLGCADILARAGVQ--VDVFDRHPEIGGMLTFGIPPFKLD-K 360
Query: 67 NVINTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKN 126
V++ + ++F+ N +G+DI+ DLT+ Y AV + G + ++P ED
Sbjct: 361 TVLSQRREIFTAMGIDFHLNCEIGRDITFSDLTSEYDAVFIGVGTYGMMRADLPHEDAPG 420
Query: 127 IISARSFVGWYN----GLPEDASLDLS-LDCEEATILGQGNVAMDVAR 169
+I A F+ + GLPE L+ ++ + +LG G+ MD R
Sbjct: 421 VIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLR 468
>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small
subunit. This model represents one of three built for
the NADPH-dependent or NADH-dependent glutamate synthase
(EC 1.4.1.13 and 1.4.1.14, respectively) small subunit
or homologous region. TIGR01316 describes a family in
several archaeal and deeply branched bacterial lineages
of a homotetrameric form for which there is no large
subunit. Another model describes glutamate synthase
small subunit from gamma and some alpha subdivision
Proteobacteria plus paralogs of unknown function. This
model describes the small subunit, or homologous region
of longer forms proteins, of eukaryotes, Gram-positive
bacteria, cyanobacteria, and some other lineages. All
members with known function participate in NADH or
NADPH-dependent reactions to interconvert between
glutamine plus 2-oxoglutarate and two molecules of
glutamate.
Length = 485
Score = 73.7 bits (181), Expect = 3e-14
Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 7/155 (4%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKT 75
V +VGSGPAG A Q+ + TV ++E+ GL+ YG+ P+ K +++
Sbjct: 146 VAVVGSGPAGLAAADQLNR--AGHTVTVFEREDRCGGLLMYGI-PNMKLDKAIVDRRIDL 202
Query: 76 GDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVG 135
++F N +G DIS +L + AVVL GA + L IPG + K I A F+
Sbjct: 203 LSAEGIDFVTNTEIGVDISADELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLP 262
Query: 136 WYNGLPEDASLD----LSLDCEEATILGQGNVAMD 166
+ ++ ++G G+ D
Sbjct: 263 SATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGAD 297
>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional.
Length = 464
Score = 70.0 bits (172), Expect = 5e-13
Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 20/168 (11%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVA----PDHPEVKNVINT 71
V ++GSGPAG CA + K+ V I+E L P G++ YG+ P VK I
Sbjct: 143 VAVIGSGPAGLTCAGDLAKM--GYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIEN 200
Query: 72 FTKTGDNPRVNFYGNICLGQDISLGDLTN--AYHAVVLTYGADNDKKLNIPGEDGKNIIS 129
K G V N+ +G+ +++ +L + AV + GA K + IPGE+ + S
Sbjct: 201 IKKLG----VKIETNVVVGKTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFS 256
Query: 130 ARSFVGWYN----GLPE-DASLDLSLDCEEATILGQGNVAMDVARILL 172
A F+ N PE D + + ++ ++G GNVAMD AR L
Sbjct: 257 ANEFLTRVNLMKAYKPEYDTPIKVG---KKVAVVGGGNVAMDAARTAL 301
>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta;
Provisional.
Length = 352
Score = 68.5 bits (168), Expect = 1e-12
Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 27/174 (15%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNV------- 68
V I+G+GPAG A L L V +Y+KLP P GL+ +G+ ++ V
Sbjct: 21 VAIIGAGPAGL-AAAGYLACLGYE-VHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKEL 78
Query: 69 ----INTFTKT---GDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPG 121
+ T+T P G+ + + +SL +L Y AV++ G +KL IPG
Sbjct: 79 EEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGIPG 138
Query: 122 EDGKNIISARSFVGW-----YNGLPEDASLDLSLDCEEATIL--GQGNVAMDVA 168
ED + SA ++ LP + + E ++ G G A+D A
Sbjct: 139 EDLPGVYSALEYLFRIRAAKLGYLPWEKVPPV----EGKKVVVVGAGLTAVDAA 188
>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase
small subunit; Provisional.
Length = 652
Score = 68.6 bits (168), Expect = 1e-12
Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 11/158 (6%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKT 75
V I+G+GPAG A +L+ V I++ G++RYG+ P ++VI+
Sbjct: 196 VAIIGAGPAGLTAAYYLLRK--GHDVTIFDANEQAGGMMRYGI-PRFRLPESVIDADIAP 252
Query: 76 GDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVG 135
F N G+DI+L +L + AV+L GA K+ IPGE+ +IS F+
Sbjct: 253 LRAMGAEFRFNTVFGRDITLEELQKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFL- 311
Query: 136 WYNGLPEDASLDLSLDCEEATIL-GQGNVAMDVARILL 172
+ +L +L + ++ G GN A+D AR L
Sbjct: 312 ------RNVALGTALHPGKKVVVIGGGNTAIDAARTAL 343
>gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta/ferritin
domain-containing protein; Provisional.
Length = 1006
Score = 65.0 bits (158), Expect = 3e-11
Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 8/160 (5%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKT 75
V I GSGPAG A ++K TV YE L V G+++YG+ P +++I+ +
Sbjct: 433 VAICGSGPAGLAAAADLVKYGVDVTV--YEALHVVGGVLQYGI-PSFRLPRDIIDREVQR 489
Query: 76 GDNPRVNFYGNICLGQDISLGDLTN--AYHAVVLTYGADNDKKLNIPGEDGKNIISARSF 133
+ V N +G+ ++ L N + AV L GA L IPGE + SA F
Sbjct: 490 LVDIGVKIETNKVIGKTFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEF 549
Query: 134 VGWYNGLPEDA--SLDLSLDCEEATI-LGQGNVAMDVARI 170
+ N + D LD + ++ + +G GN AMD R+
Sbjct: 550 LTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRV 589
>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta;
Provisional.
Length = 752
Score = 60.9 bits (148), Expect = 5e-10
Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 22/165 (13%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPE-------VKNV 68
V ++GSGPAG A + K V ++E L G+++YG+ PE V
Sbjct: 434 VAVIGSGPAGLSFAGDLAKR--GYDVTVFEALHEIGGVLKYGI----PEFRLPKKIVDVE 487
Query: 69 INTFTKTGDNPRVNFYGNICLGQDISLGDL-TNAYHAVVLTYGADNDKKLNIPGEDGKNI 127
I K G V F ++ +G+ I++ +L + + + GA +NIPGE+ +
Sbjct: 488 IENLKKLG----VKFETDVIVGKTITIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGV 543
Query: 128 ISARSF---VGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVAR 169
+S+ + V + D+ + + A + G GN AMD AR
Sbjct: 544 MSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVV-GGGNTAMDSAR 587
>gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase
subunit beta/2-polyprenylphenol hydroxylase;
Provisional.
Length = 944
Score = 58.3 bits (141), Expect = 4e-09
Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 22/169 (13%)
Query: 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPE-------V 65
KP + +VGSGP+G A L + V ++E G++RYG+ PE +
Sbjct: 306 KPPIAVVGSGPSGLINA--YLLAVEGFPVTVFEAFHDLGGVLRYGI----PEFRLPNQLI 359
Query: 66 KNVINTFTKTGDNPRVNFYGNICLGQDISLGDLTNA-YHAVVLTYGADNDKKLNIPGEDG 124
+V+ G F N +G+ +L DL A + + + GA +N+PGE
Sbjct: 360 DDVVEKIKLLGG----RFVKNFVVGKTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHL 415
Query: 125 KNIISARSF---VGWYNGLPEDASLDL-SLDCEEATILGQGNVAMDVAR 169
++SA F V GL +D L + +E ++G GN AMD AR
Sbjct: 416 LGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAAR 464
>gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit;
Reviewed.
Length = 654
Score = 55.1 bits (133), Expect = 4e-08
Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 19/173 (10%)
Query: 9 ISQLKP---NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEV 65
+SQ+ V I+G+GPAG CA + + TV Y++ P GL+ +G+ P
Sbjct: 320 LSQVTKSDKRVAIIGAGPAGLACADVLARNGVAVTV--YDRHPEIGGLLTFGI-PAFKLD 376
Query: 66 KNVI----NTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPG 121
K+++ F+ G + F N +G+DISL L Y AV + G K +P
Sbjct: 377 KSLLARRREIFSAMG----IEFELNCEVGKDISLESLLEDYDAVFVGVGTYRSMKAGLPN 432
Query: 122 EDGKNIISARSFV----GWYNGLPE-DASLDLSLDCEEATILGQGNVAMDVAR 169
ED + A F+ GL E ++ +LG G+ AMD R
Sbjct: 433 EDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVR 485
>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
Provisional.
Length = 1019
Score = 52.3 bits (126), Expect = 3e-07
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 28/166 (16%)
Query: 13 KPNVCIVGSGPAG----FYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDH----PE 64
+ V ++G+GPAG ++ A+ V ++E+ G+V+ + P
Sbjct: 539 RKKVAVIGAGPAGLAAAYFLARAGHP------VTVFEREENAGGVVKN-IIPQFRIPAEL 591
Query: 65 VKNVINTFTKTGDNPRVNFYGNICLGQDISLGDLTNA-YHAVVLTYGADNDKKLNIPGED 123
+++ I G V F D+++ L N Y VV+ GAD + L + G
Sbjct: 592 IQHDIEFVKAHG----VKFEFGC--SPDLTVEQLKNEGYDYVVVAIGADKNGGLKLEG-G 644
Query: 124 GKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVAR 169
+N+I A F+ Y L + ++G GN AMD AR
Sbjct: 645 NQNVIKALPFLEEYKNKGTALKLG-----KHVVVVGGGNTAMDAAR 685
>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit.
Members of this protein family are YgfK, predicted to be
one subunit of a three-subunit, molybdopterin-containing
selenate reductase. This enzyme is found, typically, in
genomic regions associated with xanthine dehydrogenase
homologs predicted to belong to the selenium-dependent
molybdenum hydroxylases (SDMH). Therefore, the selenate
reductase is suggested to play a role in furnishing
selenide for SelD, the selenophosphate synthase.
Length = 1012
Score = 51.3 bits (123), Expect = 5e-07
Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 24/164 (14%)
Query: 13 KPNVCIVGSGPAGFYCAQQILKL-LPQSTVDIYEKLPVPFGLVRYGVAPDH--PE--VKN 67
V ++G+GPAG + + P V ++EK P G+V+ + P+ ++
Sbjct: 537 AHKVAVIGAGPAGLSAGYFLARAGHP---VTVFEKKEKPGGVVKN-IIPEFRISAESIQK 592
Query: 68 VINTFTKTGDNPRVNF-YGNICLGQDISLGDLTNA-YHAVVLTYGADNDKKLNIPGEDGK 125
I G V F YG D+++ +L N Y V+L GA L + G G+
Sbjct: 593 DIELVKFHG----VEFKYG---CSPDLTVAELKNQGYKYVILAIGAWKHGPLRLEG-GGE 644
Query: 126 NIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVAR 169
++ + F+ + P L + ++G GN AMD AR
Sbjct: 645 RVLKSLEFLRAFKEGPTINPLG-----KHVVVVGGGNTAMDAAR 683
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 34.8 bits (81), Expect = 0.005
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 18 IVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHP 63
IVG+G +G A + K V + EK G P +
Sbjct: 1 IVGAGLSGLVAAYLLAKR--GKDVLVLEKRDRIGGNAYSERDPGYR 44
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 36.6 bits (85), Expect = 0.013
Identities = 30/177 (16%), Positives = 60/177 (33%), Gaps = 36/177 (20%)
Query: 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-------------RYGVAPD 61
+V I+G GPAG A ++ +L V + E+ +A
Sbjct: 1 DVVIIGGGPAGLAAAIRLARL--GLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIG 58
Query: 62 HPEVKNVINTF---TKTGDN-PRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKL 117
+ V F G ++ + +D+ G Y +++ GA +
Sbjct: 59 LALPEEVYKEFGVEVLLGTEVVDIDRGEKTVVLKDVETG-REITYDKLIIATGA-RPRIP 116
Query: 118 NIPGED---GKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARIL 171
IPG + + +I + L+L + ++G G + +++A L
Sbjct: 117 GIPGVEVATLRGVIDSDEI------------LELLELPKRVVVVGGGYIGLELAAAL 161
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and
related FAD-dependent oxidoreductases [Coenzyme
metabolism / Energy production and conversion].
Length = 387
Score = 34.7 bits (80), Expect = 0.084
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 15 NVCIVGSGPAGFYCAQQILKLLPQS--TVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTF 72
+V IVG+GPAG A L ++ V + E+ P G+A N +
Sbjct: 4 DVAIVGAGPAGLALAL----ALARAGLDVTLLERAPRELLERGRGIALSP----NALRAL 55
Query: 73 TKTGDNPRV 81
+ G R+
Sbjct: 56 ERLGLWDRL 64
>gnl|CDD|222141 pfam13454, NAD_binding_9, FAD-NAD(P)-binding.
Length = 153
Score = 32.6 bits (75), Expect = 0.15
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 17 CIVGSGPAGFYCAQQILKLLPQS--TVDIYEKLPVPFGLVRYGVAPDH 62
I+G+GP G +++L+ P + +++ P G V P
Sbjct: 1 AIIGAGPRGLSVLERLLRRAPDRPLDITVFDPSPPGAGGVWRTDQPPQ 48
>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional.
Length = 434
Score = 33.3 bits (77), Expect = 0.19
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 15 NVCIVGSGPAGFYCAQQILKLLPQST-VDIYEKLPVPFGL 53
+ IVG G AG A ++ K + V ++E GL
Sbjct: 1 KIAIVGGGIAGLAAAYRLAK---RGHEVTVFEADDQLGGL 37
>gnl|CDD|226906 COG4529, COG4529, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 474
Score = 32.0 bits (73), Expect = 0.49
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 13 KPNVCIVGSGPAGFYCAQQILKLL-PQSTVDIYEKLPVPFGLVRYGVA--PDHPE-VKNV 68
V I+G G +G Y A +LK P + I+E P FG G+A + PE + NV
Sbjct: 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRP-NFGQ---GIAYSTEEPEHLLNV 56
>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism].
Length = 444
Score = 31.9 bits (73), Expect = 0.58
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55
+ I+G G AG A ++ K P V ++E GL+R
Sbjct: 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLR 42
>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase
[General function prediction only].
Length = 331
Score = 30.9 bits (70), Expect = 1.2
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEK 46
P++ IVG+G AG A L+ + V ++EK
Sbjct: 2 PSIAIVGAGIAGLAAAYA-LREAGRE-VTVFEK 32
>gnl|CDD|163504 TIGR03792, TIGR03792, uncharacterized cyanobacterial protein,
TIGR03792 family. Members of this family are found, no
more than one to a genome, exclusively in (but not
universal to) the Cyanobacteria. These proteins are
small, 100-150 amino acids. The function is unknown
[Unknown function, General].
Length = 90
Score = 28.8 bits (65), Expect = 1.4
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 341 IPKEGVPVVTW---EGWKAIDKEETER 364
P+EGV ++ W E WKAI +EE E
Sbjct: 46 KPEEGVLLIRWESREQWKAIPQEELEA 72
>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function
unknown].
Length = 485
Score = 30.5 bits (69), Expect = 1.5
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPD 61
V I G+G AG A ++ V +YE G V D
Sbjct: 3 VAIAGAGLAGLAAAYELAD--AGYDVTLYEARDRLGGKVASWRDSD 46
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 30.3 bits (68), Expect = 1.8
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 18 IVGSGPAGFYCAQQILKLLPQSTVDIYE---KLPVPFGLVRYGVA 59
IVG G AG A + +LL + + + K + V
Sbjct: 3 IVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVG 47
Score = 29.1 bits (65), Expect = 4.7
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 13 KPNVCIVGSGPAGFYCAQQILKL 35
+V +VG+GP G A+ K
Sbjct: 136 PKDVVVVGAGPIGLEAAEAAAKR 158
>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional.
Length = 424
Score = 30.1 bits (68), Expect = 1.9
Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 34/134 (25%)
Query: 12 LKPNVCIVGSGPAGFYCAQQI------------------LKLLPQSTVDIYEKLPVPFGL 53
KPNV ++G+G AG Y + + LLPQ+T E
Sbjct: 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLE-------- 60
Query: 54 VRYGVAPDHPEVKNVINTFTKTG------DNPRVNFYGNICLGQDISLGDLTNAYHAVVL 107
R P P + + N + + + RV G + + ++ + Y +V+
Sbjct: 61 FRSICEPVRPALAKLPNRYLRAVVYDVDFEEKRVKC-GVVSKSNNANVNTFSVPYDKLVV 119
Query: 108 TYGADNDKKLNIPG 121
+GA + NIPG
Sbjct: 120 AHGARPN-TFNIPG 132
>gnl|CDD|233947 TIGR02600, Verru_Chthon_A, Verru_Chthon cassette protein A. In
Verrucomicrobium spinosum and Chthoniobacter flavus, a
four-gene operon that includes proteins with an
N-terminal signal sequence for cleavage and methylation
recurs many times. Each operon is likely to encode a
membrane complex, the function of which is unknown. This
model represents a long protein from this putative
membrame complex, with members averaging about 1300
amino acids. The N-terminal region includes an apparent
signal sequence. The function is unknown. Most cassettes
are adjacent to an unusually large protein with both an
outer membrane autotransporter region and PEP-CTERM
putative protein-sorting motif [Cell envelope, Surface
structures].
Length = 1265
Score = 30.2 bits (68), Expect = 2.0
Identities = 20/120 (16%), Positives = 30/120 (25%), Gaps = 14/120 (11%)
Query: 19 VGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVA--PDHPEVKNVINTFTKTG 76
G A + + L L+ + PVP V NT T
Sbjct: 712 AGEYAAAY---PKALTLMQNARP----TTPVPTEAWVPTVNLRLPRALNAEYANTQVATQ 764
Query: 77 DNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGW 136
R N + I+ GD +V + L + A +V
Sbjct: 765 LQARPESVANNPRRELIAPGDTV---RSVTVDPAGPAKGDLRSIA--VLRDVPADYYVPH 819
>gnl|CDD|216767 pfam01890, CbiG_C, Cobalamin synthesis G C-terminus. Members of
this family are involved in cobalamin synthesis. A
Synechocystis sp. PCC 6803 precorrin methylase has been
designated cbiH but in fact represents a fusion between
cbiH and cbiG. As other multi-functional proteins
involved in cobalamin biosynthesis catalyze adjacent
steps in the pathway, including CysG, CobL (CbiET),
CobIJ and CobA-HemD, it is therefore possible that CbiG
catalyzes a reaction step adjacent to CbiH. In the
anaerobic pathway such a step could be the formation of
a gamma lactone, which is thought to help to mediate the
anaerobic ring contraction process. Within the cobalamin
synthesis pathway CbiG catalyzes the both the opening of
the lactone ring and the extrusion of the two-carbon
fragment of cobalt-precorrin-5A from C-20 and its
associated methyl group (deacylation) to give
cobalt-precorrin-5B. This family is the C-terminal
region, and the mid- and N-termival parts are conserved
independently in other families.
Length = 120
Score = 28.6 bits (65), Expect = 2.1
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 178 LKSTDITEHSLEKLSTSRIKS-----VNLVGRRGALQVAFTIKEFREMTKLPHV-QTVFR 231
L ++ ++ +++ +K+ + L R G F+ +E + ++P + VF
Sbjct: 24 LAEAGLSPEAVAAIASIDLKADEPGLLELAARLGVPLRFFSAEELAAVERVPTPSEFVFA 83
Query: 232 NEQLCGVHEASATLARPRKRL 252
+ V EA+A LA P RL
Sbjct: 84 EVGVGSVAEAAALLAAPGGRL 104
>gnl|CDD|237118 PRK12496, PRK12496, hypothetical protein; Provisional.
Length = 164
Score = 29.2 bits (66), Expect = 2.1
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
Query: 49 VPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLT 108
+ G ++ + P ++ V KTGD R++ DI + L + + T
Sbjct: 45 ISAGKLKI-LEPSPESIEKVEEAAIKTGDLMRLS-------NTDIEVLALALELNGTLYT 96
Query: 109 --YGADN-DKKLNIP 120
YG N KKLNI
Sbjct: 97 DDYGIQNVAKKLNIK 111
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 29.7 bits (67), Expect = 2.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 16 VCIVGSGPAGFYCA 29
V IVG+GPAG A
Sbjct: 6 VVIVGAGPAGSSAA 19
>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 29.8 bits (68), Expect = 2.5
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEK 46
+V ++G G AG A K V + +K
Sbjct: 1 YDVIVIGGGAAGLMAAISAAK--RGRRVLLIDK 31
>gnl|CDD|131413 TIGR02360, pbenz_hydroxyl, 4-hydroxybenzoate 3-monooxygenase.
Members of this family are the enzyme 4-hydroxybenzoate
3-monooxygenase, also called p-hydroxybenzoate
hydroxylase. It converts 4-hydroxybenzoate + NADPH +
molecular oxygen to protocatechuate + NADPH + water. It
contains monooxygenase (pfam01360) and FAD binding
(pfam01494) domains. Pathways that contain this enzyme
include the protocatechuate 4,5-degradation pathway
[Energy metabolism, Other].
Length = 390
Score = 29.7 bits (67), Expect = 2.9
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVD 42
+K V I+G+GP+G Q LL ++ +D
Sbjct: 1 MKTQVAIIGAGPSGLLLGQ----LLHKAGID 27
>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional.
Length = 479
Score = 29.5 bits (67), Expect = 3.3
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55
K +V I+G+GPAG A ++LK V + E PV G+ R
Sbjct: 4 KKSVVIIGAGPAGLTAAYELLKR--GYPVTVLEADPVVGGISR 44
>gnl|CDD|178267 PLN02661, PLN02661, Putative thiazole synthesis.
Length = 357
Score = 29.4 bits (66), Expect = 3.3
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 2 MKRVYST--ISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52
M R Y T I+ +V IVG+G AG CA ++ K P V I E+ P G
Sbjct: 79 MTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSK-NPNVKVAIIEQSVSPGG 130
>gnl|CDD|236223 PRK08294, PRK08294, phenol 2-monooxygenase; Provisional.
Length = 634
Score = 29.6 bits (67), Expect = 3.4
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50
V IVG GPAG A Q L P T I E+ P
Sbjct: 35 VLIVGCGPAGLTLAAQ-LSAFPDITTRIVERKPGR 68
>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed.
Length = 451
Score = 29.4 bits (67), Expect = 3.7
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55
V I+G G G A ++ K P + + + E G ++
Sbjct: 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQ 42
>gnl|CDD|182134 PRK09897, PRK09897, hypothetical protein; Provisional.
Length = 534
Score = 29.3 bits (66), Expect = 3.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEK 46
+ IVG+GP G Y +L+ ++ I+E+
Sbjct: 4 IAIVGAGPTGIYTFFSLLQQQTPLSISIFEQ 34
>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide
oxidoreductase.
Length = 202
Score = 28.4 bits (64), Expect = 5.5
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 13/73 (17%)
Query: 102 YHAVVL-TYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQ 160
VV T K PG D + + + L + ++G
Sbjct: 127 ADYVVDATGAFSVPKPPGFPGAD-AEGVHLVDVLERID-----------LKGKTVAVIGG 174
Query: 161 GNVAMDVARILLS 173
G+ A+D A LL
Sbjct: 175 GHTAIDAALNLLD 187
>gnl|CDD|236036 PRK07512, PRK07512, L-aspartate oxidase; Provisional.
Length = 513
Score = 28.7 bits (65), Expect = 5.5
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTV 41
IVG G AG A LKL P+ V
Sbjct: 12 PVIVGGGLAGLMAA---LKLAPRPVV 34
>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional.
Length = 438
Score = 28.6 bits (64), Expect = 6.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEK 46
P + +VG+ G CA QI +L +S + I+EK
Sbjct: 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEK 34
>gnl|CDD|216076 pfam00712, DNA_pol3_beta, DNA polymerase III beta subunit,
N-terminal domain. A dimer of the beta subunit of DNA
polymerase beta forms a ring which encircles duplex DNA.
Each monomer contains three domains of identical
topology and DNA clamp fold.
Length = 120
Score = 27.2 bits (61), Expect = 6.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 117 LNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATI 157
I E G +I AR F+ LP+D + LS++ + I
Sbjct: 59 AEIESEPGSVLIPARKFLDIVRALPDDKDVKLSVNEDRLLI 99
>gnl|CDD|233855 TIGR02410, carnitine_TMLD, trimethyllysine dioxygenase. Members of
this family with known function act as trimethyllysine
dioxygenase, an enzyme in the pathway for carnitine
biosynthesis from lysine. This enzyme is homologous to
gamma-butyrobetaine,2-oxoglutarate dioxygenase, which
catalyzes the last step in carnitine biosynthesis.
Members of this family appear to be eukaryotic only.
Length = 362
Score = 28.6 bits (64), Expect = 6.7
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 25 GFYCAQQILKLLPQSTVDIYEKLPVPF 51
GFYCA+Q+ K P+ ++ K+P+P
Sbjct: 214 GFYCAEQLRKEAPED-FELLTKVPIPH 239
>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain. This domain is
involved in FAD binding in a number of enzymes.
Length = 349
Score = 28.4 bits (64), Expect = 7.0
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVD--IYEKLPVPFGLVRYGV 58
V IVG GPAG A LL ++ V + E+ L R G
Sbjct: 4 VLIVGGGPAGLMLAL----LLARAGVRVVLVERHATTSVLPRAGG 44
>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism].
Length = 443
Score = 28.6 bits (64), Expect = 7.2
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAP 60
+V I+G+G +G A + + V I+EK G RY P
Sbjct: 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFV-IFEKRDDVGGTWRYNRYP 54
>gnl|CDD|235729 PRK06185, PRK06185, hypothetical protein; Provisional.
Length = 407
Score = 28.3 bits (64), Expect = 7.6
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 16 VCIVGSGPAG 25
CIVG GPAG
Sbjct: 9 CCIVGGGPAG 18
>gnl|CDD|219349 pfam07250, Glyoxal_oxid_N, Glyoxal oxidase N-terminus. This family
represents the N-terminus (approximately 300 residues)
of a number of plant and fungal glyoxal oxidase enzymes.
Glyoxal oxidase catalyzes the oxidation of aldehydes to
carboxylic acids, coupled with reduction of dioxygen to
hydrogen peroxide. It is an essential component of the
extracellular lignin degradation pathways of the
wood-rot fungus Phanerochaete chrysosporium.
Length = 243
Score = 27.8 bits (62), Expect = 7.8
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLE-KLSTSRIKSVNLV 202
+ T G N+++ R P D D + HS+ ++T+ I+ + +
Sbjct: 15 DRTNFGPSNISLPPGRCRPDPGDAPLKIDCSAHSVLYDVATNTIRPLTVQ 64
>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model
when searched with a partial length search brings in
proteins with a dinucleotide-binding motif (Rossman
fold) over the initial 40 residues of the model,
including oxidoreductases and dehydrogenases. Partially
characterized members include an FAD-binding protein
from Bacillus cereus and flavoprotein HI0933 from
Haemophilus influenzae [Unknown function, Enzymes of
unknown specificity].
Length = 400
Score = 27.9 bits (63), Expect = 9.1
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 18 IVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48
I+G G AG A + +V + EK
Sbjct: 2 IIGGGAAGLMAAITAAR--EGLSVLLLEKNK 30
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.135 0.393
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,625,052
Number of extensions: 1888861
Number of successful extensions: 1726
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1673
Number of HSP's successfully gapped: 65
Length of query: 388
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 289
Effective length of database: 6,546,556
Effective search space: 1891954684
Effective search space used: 1891954684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.9 bits)