RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4525
(388 letters)
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis,
electron transferase, oxidoreductase; HET: FAD; 1.70A
{Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A*
1e1m_A* 1e1n_A* 1e6e_A*
Length = 460
Score = 375 bits (964), Expect = e-128
Identities = 187/454 (41%), Positives = 253/454 (55%), Gaps = 80/454 (17%)
Query: 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFT 73
P +C+VGSGPAGFY AQ +LK ++ VDIYEK VPFGLVR+GVAPDHPEVKNVINTFT
Sbjct: 7 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFT 66
Query: 74 KTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSF 133
+T + R FYGN+ +G+D+++ +L +AYHAVVL+YGA++ + L+IPGE+ + SAR+F
Sbjct: 67 QTARSDRCAFYGNVEVGRDVTVQELQDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAF 126
Query: 134 VGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLST 193
VGWYNGLPE+ L L C+ A ILGQGNVA+DVARILL+P D L+ TDITE +L L
Sbjct: 127 VGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQ 186
Query: 194 SRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLT 253
SR+K+V +VGRRG LQVAFTIKE REM +LP + + G+ + ARPRKRL
Sbjct: 187 SRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLM 246
Query: 254 ELILKTS------NPDESKSNCSKYFRPIFLRSPTEFKLNDNGA-ITGINFA-------- 298
EL+L+T+ +++ S+ + F RSP + + +G GI A
Sbjct: 247 ELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIG 306
Query: 299 -NQQALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCT-------VIPKEGVPVVT 350
+A+ T D E +P G+ SIGY+SR +D +PF+ K V+ G+
Sbjct: 307 EATRAVPTGDVEDLPCGLVLSSIGYKSRPIDPSVPFDPKLGVVPNMEGRVVDVPGLYCSG 366
Query: 351 W-------------------------------------EGWKAIDKEETER--------- 364
W G I R
Sbjct: 367 WVKRGPTGVITTTMTDSFLTGQILLQDLKAGHLPSGPRPGSAFIKALLDSRGVWPVSFSD 426
Query: 365 -----------GKLKGKPREKIISIEEMISVSGN 387
G+ GKPREK++ +EM+ + G+
Sbjct: 427 WEKLDAEEVSRGQASGKPREKLLDPQEMLRLLGH 460
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis}
SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Length = 456
Score = 353 bits (908), Expect = e-119
Identities = 137/452 (30%), Positives = 205/452 (45%), Gaps = 85/452 (18%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQST-----VDIYEKLPVPFGLVRYGVAPDHPEVKNVIN 70
+ IVGSGP+ F+ A +LK + VD+ E LP P+GLVR GVAPDHP++K++
Sbjct: 6 IAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISK 65
Query: 71 TFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISA 130
F KT ++PR F+GN+ +G+ + G+L+ Y AV+ GA +D+ LNIPGED I+A
Sbjct: 66 QFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGSIAA 125
Query: 131 RSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEK 190
FVGWYN P + L A ++G GNVA+DVARILL+ D L TDI +H+LE
Sbjct: 126 VDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALES 185
Query: 191 LSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVH-EASATLARPR 249
L I+ V +VGRRG LQ AFT E RE+ L V V +L G+ E +A + +
Sbjct: 186 LRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVC 245
Query: 250 KRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGA--------ITGINFANQQ 301
K+ +++ ++ + + FR FL SP E K +
Sbjct: 246 KQNIKVLRGYADREPRPGHRRMVFR--FLTSPIEIKGKRKVERIVLGRNELVSDGSGRVA 303
Query: 302 ALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCT-------VIPKEGVPVVTW--- 351
A T + E +P+ + RS+GY+ +PF+++S T + VV W
Sbjct: 304 AKDTGEREELPAQLVVRSVGYRGVPTP-GLPFDDQSGTIPNVGGRINGSPNEYVVGWIKR 362
Query: 352 --------------------------------------EGWKAIDKEETERG-------- 365
+ + R
Sbjct: 363 GPTGVIGTNKKDAQDTVDTLIKNLGNAKEGAECKSFPEDHADQVADWLAARQPKLVTSAH 422
Query: 366 ------------KLKGKPREKIISIEEMISVS 385
+ G+PR K+ S+ E++ +
Sbjct: 423 WQVIDAFERAAGEPHGRPRVKLASLAELLRIG 454
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 84.1 bits (209), Expect = 5e-18
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 27/169 (15%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQS--TVDIYEKLPVPFGLVRYGVAPDHPEV---KNVI- 69
V ++G+GPAG A++ L V +Y++ GL+ YG+ P K+V+
Sbjct: 125 VGVIGAGPAGLAAAEE----LRAKGYEVHVYDRYDRMGGLLVYGI----PGFKLEKSVVE 176
Query: 70 ---NTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKN 126
G V ++ N +G+D SL +L + AV++ G + + PG N
Sbjct: 177 RRVKLLADAG----VIYHPNFEVGRDASLPELRRKHVAVLVATGVYKARDIKAPGSGLGN 232
Query: 127 IISARSFVGWYN----GLPEDASLDLSLDCE--EATILGQGNVAMDVAR 169
I++A ++ N G +A + SL+ +LG G+ AMD R
Sbjct: 233 IVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVR 281
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 83.3 bits (206), Expect = 2e-17
Identities = 39/175 (22%), Positives = 61/175 (34%), Gaps = 36/175 (20%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPE---VKNV---- 68
+ ++G+GPA CA L L S + I+EK GL + P+ +V
Sbjct: 190 IALLGAGPASISCAS-FLARLGYSDITIFEKQEYVGGLSTSEI----PQFRLPYDVVNFE 244
Query: 69 INTFTKTGDNPRVNFYGNICLGQ-DISLGDLTN-AYHAVVLTYGADNDKKLNIPG--EDG 124
I G V L + +I+L L Y A + G K +I
Sbjct: 245 IELMKDLG----VKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQD 300
Query: 125 KNIISARSFVGWYNGLPEDASLDLSLDCEEAT----------ILGQGNVAMDVAR 169
+ +++ F LP A + C + +LG G+ A D A
Sbjct: 301 QGFYTSKDF------LPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCAT 349
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 2e-06
Identities = 45/316 (14%), Positives = 92/316 (29%), Gaps = 109/316 (34%)
Query: 1 MMKRVYSTISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAP 60
++ + +L+P ++ G G + + L + + K+ + +
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLG--SGKTWVALDVCLSYKVQCKMD-------FKI-- 184
Query: 61 DHPEVKNVINTFTKTGDNPRVNFYGNICLGQDIS----LGDLTNAYHAVVLTYGADNDKK 116
F+ + L S L L + + + + +D
Sbjct: 185 ----------------------FW--LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 117 LNIP--GEDGK----NIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDV-AR 169
NI + ++ ++ + N L L L + + A A ++ +
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYE---NCL-----LVLL-NVQNAKAWN----AFNLSCK 267
Query: 170 ILL-----SPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREM---- 220
ILL D L + T SL+ S + T E + +
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMT-----------------LTPDEVKSLLLKY 310
Query: 221 -----TKLPHVQTVFRNEQLCGV-----HEASATLARPR----KRLTELI---LKTSNPD 263
LP + + N + + + AT + +LT +I L P
Sbjct: 311 LDCRPQDLPR-EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 264 ESKSNCSKYFRP--IF 277
E + K F +F
Sbjct: 370 EYR----KMFDRLSVF 381
Score = 48.7 bits (115), Expect = 2e-06
Identities = 41/351 (11%), Positives = 93/351 (26%), Gaps = 106/351 (30%)
Query: 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGED-------------GKNIISARSFVG-- 135
+D+ D+ + +L+ + D + + ++ FV
Sbjct: 36 KDVQ--DMPKS----ILS-KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK--FVEEV 86
Query: 136 ------W----YNGLPEDASLDLSLDCEEATILGQGNVA---MDVARILLSPVDQLKSTD 182
+ S+ + E+ L N +V+R+ P +L+
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL--QPYLKLRQ-- 142
Query: 183 ITEHSLEKLSTSRI----------KSVNLVG---RRGALQVAFTIKEF--------REMT 221
+L +L ++ K+ + +Q K F T
Sbjct: 143 ----ALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 222 KLPHVQTVFRN--EQLCGVHEASATLARP----RKRLTELILKTSNP-------DESKSN 268
L +Q + + S+ + + L L+ + +
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 269 CSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTE--LIPSGIAFRSIGYQSRC 326
F L ++ A + + L P +
Sbjct: 258 AWNAFN---LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD----EVKSLLLKY 310
Query: 327 VD---SDIPFNEKSCTVIP----------KEGVPVVTWEGWKAIDKEETER 364
+D D+P + T P ++G+ TW+ WK ++ ++
Sbjct: 311 LDCRPQDLP--REVLTTNPRRLSIIAESIRDGL--ATWDNWKHVNCDKLTT 357
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 3e-06
Identities = 74/422 (17%), Positives = 130/422 (30%), Gaps = 142/422 (33%)
Query: 47 LPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVV 106
L VP + +A E F K P F + + + +L +
Sbjct: 20 LLVPTAS--FFIASQLQE------QFNKILPEPTEGFAAD---DEPTTPAELVGKF---- 64
Query: 107 LTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMD 166
L Y + + P + G D L+L L E L ++
Sbjct: 65 LGYVSSLVE----PSKVG----------------QFDQVLNLCLTEFENCYLEGNDIHAL 104
Query: 167 VARILL-SPVDQLKSTDI----------TEHSLEKLSTSR-IKSVNLVGRRGALQVAFTI 214
A++L + +K+ ++ + +K S S ++V G Q+ I
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG----EGNAQL-VAI 159
Query: 215 -----------KEFREM--TKLPHVQTVFRN--EQLCGVHEASATLARPRKRLTELI--- 256
+E R++ T V + + E L E T K T+ +
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS---ELIRTTLDAEKVFTQGLNIL 216
Query: 257 --LKTSN--PDESKSNCSKYFR------P-IFL--------------RSPTEFKLNDNGA 291
L+ + PD+ Y P I + +P E + GA
Sbjct: 217 EWLENPSNTPDKD------YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 292 ITGINFANQQALVT------EDT-----ELIPSGI--AFRSIGYQSRCV--DSDIPFNEK 336
TG + Q LVT D+ + I F IG + ++ +P +
Sbjct: 271 -TGHS----QGLVTAVAIAETDSWESFFVSVRKAITVLF-FIGVRCYEAYPNTSLPPSIL 324
Query: 337 SCTVIPKEGVP----VVTWEGWKAIDKEETER--GKL-KGKPREKIISI-----EEMISV 384
++ EGVP + + +E+ + K P K + I + + V
Sbjct: 325 EDSLENNEGVPSPMLSI-----SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV 379
Query: 385 SG 386
SG
Sbjct: 380 SG 381
Score = 44.7 bits (105), Expect = 5e-05
Identities = 38/248 (15%), Positives = 76/248 (30%), Gaps = 85/248 (34%)
Query: 26 FY-CAQQILKLL-----------P---------QSTVDIYEKLPVPFGLVRYGVAPDHPE 64
F+ ++ + +L P + +++ E +P P + + +
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS-NL--TQEQ 348
Query: 65 VKNVINTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLT------YGADND-KKL 117
V++ +N + N + G+ + + L N +V++ YG + +K
Sbjct: 349 VQDYVN---------KTNSHLP--AGKQVEIS-LVNGAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 118 NIP-GEDGKNI-ISARSFVGWYNGLP----------EDASLDLSLDCEEATIL------- 158
P G D I S R LP AS ++ D + +
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 159 --------GQ------GNVAMDVAR-ILLSPVD--QLKSTDITEHSLE--KLSTSRIKSV 199
G G+++ + I+ PV T H L+ S + +
Sbjct: 457 IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT-HILDFGPGGASGLGVL 515
Query: 200 ---NLVGR 204
N G
Sbjct: 516 THRNKDGT 523
Score = 33.9 bits (77), Expect = 0.095
Identities = 26/163 (15%), Positives = 56/163 (34%), Gaps = 67/163 (41%)
Query: 94 SLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWY--NGLPEDASLDLSLD 151
SLG+ Y A L AD ++I E ++ R G +P D
Sbjct: 1763 SLGE----YAA--LASLAD---VMSI--ESLVEVVFYR---GMTMQVAVPRDE------- 1801
Query: 152 CEEATILGQGNVAM---DVARILLSP--------VDQL--KSTDITE------------- 185
LG+ N M + R+ S V+++ ++ + E
Sbjct: 1802 ------LGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA 1855
Query: 186 ----HSLEKLST----SRIKSVNLVGRRGALQVAFTIKEFREM 220
+L+ ++ +++ ++++ LQ + +++E
Sbjct: 1856 AGDLRALDTVTNVLNFIKLQKIDII----ELQKSLSLEEVEGH 1894
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 44.6 bits (106), Expect = 4e-05
Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 11/118 (9%)
Query: 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY-GVAPDHPEVKNVINTFT 73
N+ +VG+GPAG A V +++ G P E + +
Sbjct: 375 NLAVVGAGPAGLAFA-INAAAR-GHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYR 432
Query: 74 KTGDNPRVNFYG-NICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISA 130
+ + G + L ++ L A+ +L G + I G D ++S
Sbjct: 433 R-----MIEVTGVTLKLNHTVTADQLQ-AFDETILASGI-VPRTPPIDGIDHPKVLSY 483
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 42.1 bits (98), Expect = 2e-04
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52
+V IVG+G +G A I K P V I E P G
Sbjct: 67 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG 104
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 41.3 bits (96), Expect = 4e-04
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 1 MMKRVYSTISQ-LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52
M +R ++ + + ++ IVG+G G A + L P + I E P G
Sbjct: 66 MTRRYFADLDAHAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGG 118
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase,
flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE;
1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A*
3ayl_A*
Length = 721
Score = 41.0 bits (94), Expect = 6e-04
Identities = 34/182 (18%), Positives = 50/182 (27%), Gaps = 12/182 (6%)
Query: 14 PNVCIVGSGPAGFYCAQQILKLLPQS------TVDIYEKLPVPFGLVRYGVAPDHPEVKN 67
+ IVG G G ++ +L V IYE P F R G+
Sbjct: 57 YRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVRGLK 116
Query: 68 VINTFTKTGDNPRVNFYGNIC-LGQ-DISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGK 125
N I +G ++A A K PG+
Sbjct: 117 AGRVSAALVHNGDPASGDTIYEVGAMRFPEIAGLTWHYASAAFGDAAPIKVFPNPGKVPT 176
Query: 126 NIISARSFVGWYNGLPEDA----SLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKST 181
+ + P+D S L + A L +VA ++ VD K
Sbjct: 177 EFVFGNRVDRYVGSDPKDWEDPDSPTLKVLGVVAGGLVGNPQGENVAMYPIANVDPAKIA 236
Query: 182 DI 183
I
Sbjct: 237 AI 238
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 38.0 bits (88), Expect = 0.004
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 10 SQLKPNVCIVGSGPAG----FYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55
S K +V I+G G G FY ++I + + + E P G ++
Sbjct: 2 SDGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQ 51
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 37.4 bits (86), Expect = 0.006
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGV 58
+ ++G+GPAG A Q+ + P +DI EK ++ +GV
Sbjct: 2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKND-EQEVLGWGV 44
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 36.6 bits (83), Expect = 0.011
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 13 KPNVCIVGSGPAGFYCAQQILKLLPQS--TVDIYEK 46
+ I+G+G AG AQ L + V +++K
Sbjct: 2 TVPIAIIGTGIAGLSAAQ----ALTAAGHQVHLFDK 33
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 36.5 bits (84), Expect = 0.011
Identities = 10/43 (23%), Positives = 14/43 (32%)
Query: 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55
+ IVG G G A + P + + E G V
Sbjct: 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVA 46
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 36.9 bits (86), Expect = 0.012
Identities = 22/133 (16%), Positives = 37/133 (27%), Gaps = 30/133 (22%)
Query: 15 NVCIVGSGPAGFYCAQQILKLLPQST-------VDIYEKLPVPFGLVRY-GVAPDHPEVK 66
V +VG+GP+G A+ V + E G V P
Sbjct: 393 RVLVVGAGPSGLEAAR---------ALGVRGYDVVLAEAGRDLGGRVTQESALPGLSAWG 443
Query: 67 NVINTF-TKTGDNPRVNFYGNICLGQDISLGDLTN-AYHAVVLTYGA-------DNDKKL 117
V + P V I ++ D+ + V+ GA
Sbjct: 444 RVKEYREAVLAELPNV----EIYRESPMTGDDIVEFGFEHVITATGATWRTDGVARFHTT 499
Query: 118 NIPGEDGKNIISA 130
+P +G ++
Sbjct: 500 ALPIAEGMQVLGP 512
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 36.8 bits (84), Expect = 0.012
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 8 TISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55
T + +V ++G+GP G A+++ ++ S I + P GL
Sbjct: 5 THPDISVDVLVIGAGPTGLGAAKRLNQIDGPS-WMIVDSNETPGGLAS 51
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 36.8 bits (84), Expect = 0.012
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 7 STISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55
+ L P + I+G+GP G A ++ +L ++ +YE P GL R
Sbjct: 3 AMAELLTPKIVIIGAGPTGLGAAVRLTELGYKN-WHLYECNDTPGGLSR 50
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 36.3 bits (82), Expect = 0.018
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 1 MMKRVYSTISQLKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLPVPFGLVRYGVA 59
++ R ++ + IVG G AG+ A + K L + + + + +P V
Sbjct: 14 LVPRGSHMSGKID-KILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATI 72
Query: 60 P 60
P
Sbjct: 73 P 73
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical
bundle, sandwiched sheets, structural genomics; HET:
TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A*
2ar8_A* 2ard_A* 2jkc_A*
Length = 538
Score = 36.2 bits (82), Expect = 0.019
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 15 NVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLPVPFGLVRYGVAP 60
N+ IVG G AG+ A +++ L Q + + E +P V P
Sbjct: 7 NIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIPRIGVGEATIP 53
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
ADP; 2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 35.4 bits (80), Expect = 0.025
Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 2 MKRVYSTISQLKPN----VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50
V++ + Q + ++G+G G CA + +L P ++ + E+ +P
Sbjct: 21 AGSVWAHVGQHFTEEAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLP 73
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 35.5 bits (81), Expect = 0.028
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 7 STISQLKPNVCIVGSGPAGFYCAQQILK 34
+T+S K V I+G+G AG A + +
Sbjct: 2 NTVSPAKKKVIIIGAGIAGLKAASTLHQ 29
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 35.1 bits (79), Expect = 0.029
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 14 PNVCIVGSGPAGFYCAQQILKL-LPQSTVDIYEKLPVPFG 52
V IVG+G G CA + + + +++K G
Sbjct: 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGG 41
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei;
HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 34.7 bits (78), Expect = 0.053
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 15 NVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLPVPFGLVRYGVAP 60
+V IVG G AG+ A + V + E V V
Sbjct: 4 SVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVRRIGVGEATFS 50
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 34.5 bits (79), Expect = 0.056
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEK 46
+ I+G+GPAG L+ I E+
Sbjct: 6 DSRIAIIGAGPAGLAAGMY-LEQAGFHDYTILER 38
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 34.2 bits (77), Expect = 0.069
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYE 45
+ IVG+G AG + + V I E
Sbjct: 45 KRILIVGAGIAGLVAGDLLTRA--GHDVTILE 74
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 33.9 bits (77), Expect = 0.072
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 1 MMKRVYSTISQ-LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVA 59
M +R + + + +V +VG+G AG A +I K P V I E+ P G G
Sbjct: 26 MTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISK-NPNVQVAIIEQSVSPGGGAWLGGQ 84
Query: 60 PDHPEV 65
+
Sbjct: 85 LFSAMI 90
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO,
variegate porphyria disease, VP
oxidoreductase-oxidoreductase inhibitor complex; HET:
ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 33.5 bits (76), Expect = 0.13
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55
V ++G G +G + + + V + E G +R
Sbjct: 4 TVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIR 44
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A
{Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A*
2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A*
2xls_A* 2xlr_A*
Length = 464
Score = 32.7 bits (74), Expect = 0.19
Identities = 13/68 (19%), Positives = 19/68 (27%), Gaps = 15/68 (22%)
Query: 1 MMKRVYSTISQLKPNVCIVGSGPAGF----YCAQQILKLLPQSTVDIYEKLPVPFGLVRY 56
M R+ I+G+GP+G K + +EK G Y
Sbjct: 1 MATRI-----------AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNY 49
Query: 57 GVAPDHPE 64
E
Sbjct: 50 TWRTGLDE 57
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement,
oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum}
SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Length = 665
Score = 32.7 bits (74), Expect = 0.24
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 7 STISQLKPNVCIVGSGPAGFYCA---QQILKLLPQSTVDIYEKLPVPFGLVR 55
+ S+ +V IVG+GPAG A + ++ P V I +K +
Sbjct: 2 TKYSESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQ 53
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 32.2 bits (73), Expect = 0.29
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Query: 8 TISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKN 67
+ ++ + I+G+GP+G A+ +L V ++E+ P G+ Y
Sbjct: 2 CLPTIR-KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY--TSTLSNKLP 58
Query: 68 VINTFTKTGDNPRVNFYG 85
V +T P V
Sbjct: 59 VPSTNPILTTEPIVGPAA 76
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG,
structural genomics, PSI-2, prote structure initiative;
HET: FAD; 2.15A {Vibrio parahaemolyticus}
Length = 549
Score = 31.9 bits (72), Expect = 0.34
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 3 KRVYSTISQLKPNVCIVGSGPAGFYCA 29
K V L ++G GP G +
Sbjct: 97 KFVAKAPENLTERPIVIGFGPCGLFAG 123
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 31.6 bits (71), Expect = 0.39
Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 20/99 (20%)
Query: 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR------YGVAP------ 60
+ IVG+G +G +Q+ + V I ++ G V
Sbjct: 3 SKKILIVGAGFSGAVIGRQLAEK--GHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPH 60
Query: 61 ----DHPEVKNVINTFTKTGDNPRVNFYGNICLGQDISL 95
D+ V N +N + P VN GQ SL
Sbjct: 61 IFHTDNETVWNYVNKHAE--MMPYVNRVKATVNGQVFSL 97
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 31.4 bits (72), Expect = 0.47
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTV 41
+ I+G+GPAGF A+ L T+
Sbjct: 9 STKILILGAGPAGFSAAKAALGKCDDITM 37
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural
genomics, JCSG, protein structure initiative
biosynthetic protein; HET: MSE TLA PG4; 1.50A
{Shewanella frigidimarina}
Length = 526
Score = 31.6 bits (70), Expect = 0.48
Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 7/75 (9%)
Query: 1 MMKRVYSTISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAP 60
MM++ + + IVG G AG+ A + + + L+
Sbjct: 2 MMQK------PIT-EIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVA 54
Query: 61 DHPEVKNVINTFTKT 75
+ + T
Sbjct: 55 TIGVGEGTWPSMRST 69
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 31.5 bits (71), Expect = 0.54
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 16 VCIVGSGPAGFYCA 29
V I+G GPAG
Sbjct: 26 VAIIGGGPAGSVAG 39
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 31.0 bits (70), Expect = 0.63
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 10 SQLKPNVCIVGSGPAGFYCAQQILK 34
+ + P V +VG+G +G A+++ +
Sbjct: 1 ATVGPRVIVVGAGMSGISAAKRLSE 25
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD
BCN; 2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 30.9 bits (69), Expect = 0.65
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 1 MMKRVYSTISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55
M + ++ +VGSG G A+++ L + V + E+ P G
Sbjct: 4 MTA---------RFDLFVVGSGFFGLTIAERVATQLDKR-VLVLERRPHIGGNAY 48
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta
strands, dimer, cavity, oxidoreductase; 2.30A
{Pseudomonas putida}
Length = 430
Score = 31.0 bits (69), Expect = 0.73
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 4 RVYSTISQLKPNVCIVGSGPAGFYCAQQILK 34
+ S +K + IVG+G AG + + +
Sbjct: 13 GLVPRGSHMKKRIGIVGAGTAGLHLGLFLRQ 43
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 30.4 bits (68), Expect = 0.89
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 20/76 (26%)
Query: 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR-----------YGVAP--- 60
+ IVGSG G CA ++ KL V + EK G YG
Sbjct: 3 DYIIVGSGLFGAVCANELKKL--NKKVLVIEKRNHIGGNAYTEDCEGIQIHKYG--AHIF 58
Query: 61 --DHPEVKNVINTFTK 74
+ + + +N +
Sbjct: 59 HTNDKYIWDYVNDLVE 74
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 30.8 bits (70), Expect = 0.91
Identities = 22/141 (15%), Positives = 40/141 (28%), Gaps = 39/141 (27%)
Query: 15 NVCIVGSGPAGFYCAQQILKLLPQST-------VDIYEKLPVPFGLVRY-GVAPDHPEVK 66
+V IVG+GP+G A+ V + + G + P E
Sbjct: 391 SVLIVGAGPSGSEAAR---------VLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWS 441
Query: 67 NVINTFTKTGDNPRVNFYGNICLGQDISLGD--------LTNAYHAVVLTYGA------- 111
+ ++ ++LG L V++ GA
Sbjct: 442 YHRDYRET-----QITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIATGARWNTDGT 496
Query: 112 DNDKKLNIPGEDGK--NIISA 130
+ IPG D + ++
Sbjct: 497 NCLTHDPIPGADASLPDQLTP 517
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 30.7 bits (69), Expect = 0.95
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 16 VCIVGSGPAGFYCA 29
+ ++G GP G A
Sbjct: 10 LIVIGGGPGGSTLA 23
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module,
glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil;
3.30A {Clostridium perfringens}
Length = 737
Score = 30.8 bits (68), Expect = 0.95
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 15 NVCIVGSGPAG-FYCAQQILKLLPQST---VDIYEKLPVPF-GLVR--YGVAPDHPEVKN 67
+ I G G FY Q +L+ +S V+I + V G+V YG H + +
Sbjct: 111 KIAIEGKDGDGTFYGVQTFKQLVKESNIPEVNITDYPTVSARGIVEGFYGTPWTHQDRLD 170
Query: 68 VINTFTKTGDNP 79
I + + N
Sbjct: 171 QIKFYGENKLNT 182
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 30.7 bits (69), Expect = 1.0
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55
V IVG GPAG A Q+ T I E+ P L +
Sbjct: 35 VLIVGCGPAGLTLAAQLAAFPDIRTC-IVEQKEGPMELGQ 73
>2v5c_A O-GLCNACASE NAGJ; glycosidase, GH84, GH84C, hydrolase, coiled coil,
family 84 glycoside hydrolase, carbohydrate binding
module; 2.10A {Clostridium perfringens} PDB: 2cbj_A*
2cbi_A 2vur_A* 2x0y_A* 2j62_A* 2wb5_A* 2xpk_A* 2yds_A*
2ydr_A* 2ydq_A*
Length = 594
Score = 30.6 bits (68), Expect = 1.1
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 15 NVCIVGSGPAG-FYCAQQILKLLPQST---VDIYEKLPVPF-GLVR--YGVAPDHPEVKN 67
+ I G G FY Q +L+ +S V+I + V G+V YG H + +
Sbjct: 111 KIAIEGKDGDGTFYGVQTFKQLVKESNIPEVNITDYPTVSARGIVEGFYGTPWTHQDRLD 170
Query: 68 VINTFTKTGDNP 79
I + + N
Sbjct: 171 QIKFYGENKLNT 182
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis,
FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 30.3 bits (69), Expect = 1.1
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 7 STISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTV 41
+T+ + +V I+GSG AG A L+L Q V
Sbjct: 2 NTLPEHSCDVLIIGSGAAGLSLA---LRLADQHQV 33
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 30.5 bits (68), Expect = 1.2
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55
V ++G+G +G A ++ V ++E G +R
Sbjct: 13 AKRVAVIGAGVSGLAAAYKLKI--HGLNVTVFEAEGKAGGKLR 53
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET:
BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 30.2 bits (68), Expect = 1.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDI 43
V IVG+GPAG A ++ +L Q D+
Sbjct: 38 VVIVGAGPAGLSAATRLKQLAAQHEKDL 65
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET:
FAD; 2.60A {Enterococcus faecalis}
Length = 452
Score = 30.1 bits (69), Expect = 1.4
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEK 46
+ I+G+ AG A K PQ+ + + +K
Sbjct: 5 IVIIGASFAGISAAIASRKKYPQAEISLIDK 35
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 29.8 bits (68), Expect = 1.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEK 46
V +VG AG + +Q + P + V YE
Sbjct: 3 VIVVGCTHAGTFAVKQTIADHPDADVTAYEM 33
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein,
redox-active center, oxidoreductase, D oxidoreductase;
HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5
c.3.1.5 PDB: 2whd_A*
Length = 333
Score = 29.8 bits (68), Expect = 1.5
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 7 STISQLKPNVCIVGSGPAGF 26
+ + +CIVGSGPA
Sbjct: 2 NGLETHNTRLCIVGSGPAAH 21
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 29.8 bits (68), Expect = 1.6
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEK 46
V ++GS G+ +++L L P + + YEK
Sbjct: 3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEK 33
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 29.8 bits (68), Expect = 1.6
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 12/46 (26%)
Query: 1 MMKRVYSTISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEK 46
+ K V I+G G AG A ++ +L P+ V ++E
Sbjct: 3 LKK------------VVIIGGGAAGMSAASRVKRLKPEWDVKVFEA 36
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur
initiative; 2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 29.8 bits (68), Expect = 1.8
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEK 46
V ++G+ G A + +L P++ V + ++
Sbjct: 6 VVVIGAVALGPKAACRFKRLDPEAHVTMIDQ 36
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD;
1.54A {Staphylococcus aureus}
Length = 438
Score = 29.8 bits (68), Expect = 1.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEK 46
+ +VG+ G CA QI +L +S + I+EK
Sbjct: 4 IVVVGAVAGGATCASQIRRLDKESDIIIFEK 34
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 29.5 bits (67), Expect = 1.9
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEK 46
+ +VG G A ++ +L + + + E+
Sbjct: 39 IVVVGGVAGGASVAARLRRLSEEDEIIMVER 69
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved
protein, rossmann fold, structural genomics, NPPSFA;
HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Length = 180
Score = 29.0 bits (66), Expect = 1.9
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 4/19 (21%)
Query: 15 NVCIVGSGPAGF----YCA 29
+V +VG GP+G + A
Sbjct: 3 DVIVVGGGPSGLSAALFLA 21
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 29.3 bits (65), Expect = 2.0
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55
+ IVG+G AG A+++ V I ++ P G
Sbjct: 29 GFDYLIVGAGFAGSVLAERLASS--GQRVLIVDRRPHIGGNAY 69
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 29.5 bits (67), Expect = 2.2
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEK 46
+ I+G G A + +L + + ++E+
Sbjct: 4 ILIIGGVAGGASAAARARRLSETAEIIMFER 34
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 29.4 bits (67), Expect = 2.2
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEK 46
I+G AG A QI++ + V EK
Sbjct: 39 YVIIGGDAAGMSAAMQIVRNDENANVVTLEK 69
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 29.3 bits (66), Expect = 2.3
Identities = 5/30 (16%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDI 43
V ++G A + +L+ D+
Sbjct: 2 TKVLVLGGRFGALTAAYTLKRLVGSK-ADV 30
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 29.2 bits (66), Expect = 2.5
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 16 VCIVGSGPAGFYCA 29
V +VG GP G A
Sbjct: 7 VLVVGGGPGGSTAA 20
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES
protein structure initiative, northeast structural
genomics consortium; HET: FAD; 2.60A {Cytophaga
hutchinsonii}
Length = 421
Score = 29.4 bits (66), Expect = 2.5
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 16 VCIVGSGPAGFYCA 29
V ++G+GPAG A
Sbjct: 8 VLVIGAGPAGTVAA 21
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB:
2ive_A*
Length = 478
Score = 28.8 bits (64), Expect = 3.0
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55
NV +VG G +G A + + + E G V
Sbjct: 17 MNVAVVGGGISGLAVAHHLRSRGTDAVL--LESSARLGGAVG 56
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 29.1 bits (66), Expect = 3.0
Identities = 6/47 (12%), Positives = 18/47 (38%), Gaps = 12/47 (25%)
Query: 1 MMKRVYSTISQLKPNVCIVGSGPAGFYCAQQILKLLPQST-VDIYEK 46
++ +VG+ AG C + +L + + ++++
Sbjct: 34 WGSKI-----------VVVGANHAGTACIKTMLTNYGDANEIVVFDQ 69
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 28.6 bits (64), Expect = 4.0
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 16 VCIVGSGPAGFYCA 29
V I+G G AG A
Sbjct: 9 VLIIGGGFAGSSAA 22
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant,
homotetramer, GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 28.6 bits (63), Expect = 4.1
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 16 VCIVGSGPAG 25
V IVGSGP G
Sbjct: 49 VVIVGSGPIG 58
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 28.3 bits (64), Expect = 4.4
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTV 41
+ + I+G+G AG+ A++ KL ++ +
Sbjct: 4 RAPLVIIGTGLAGYNLAREWRKLDGETPL 32
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 28.3 bits (64), Expect = 4.5
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 3 KRVYSTISQLKPNVCIVGSGPAGFYCA 29
+ +Y + + +V ++G GP+G A
Sbjct: 16 ENLYFQSNAMHYDVIVIGGGPSGLMAA 42
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct
structural genomics, PSI, protein structure initiative;
HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Length = 335
Score = 28.3 bits (64), Expect = 4.6
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 15 NVCIVGSGPAGF 26
+V ++GSGPAG+
Sbjct: 16 DVIVIGSGPAGY 27
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide
binding, FAD, flavoprotein, oxidoreductase; HET: FAD;
1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 27.9 bits (63), Expect = 5.5
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 10/38 (26%)
Query: 15 NVCIVGSGPAGF----YCAQQILKLLPQSTVDIYEKLP 48
+V IVG GPA + Y A+ +LK L + + P
Sbjct: 17 DVIIVGLGPAAYGAALYSARYMLKTL------VIGETP 48
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; HET:
FDA; 2.51A {Sinorhizobium meliloti}
Length = 417
Score = 28.2 bits (64), Expect = 5.5
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 8/29 (27%)
Query: 1 MMKRVYSTISQLKPNVCIVGSGPAGFYCA 29
M+ + I+G+G AG CA
Sbjct: 23 MVAEKQDVV--------IIGAGAAGMMCA 43
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein,
oxidoreductase, enantioselectivity, directed evolution
variant; HET: FAD; 1.85A {Aspergillus niger} PDB:
2vvl_A* 2vvl_G*
Length = 495
Score = 28.0 bits (62), Expect = 6.2
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTV 41
V ++G G G + + ++ +
Sbjct: 42 VIVIGGGYCGLTATRDLTVAGFKTLL 67
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 27.8 bits (63), Expect = 6.4
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 8/28 (28%)
Query: 2 MKRVYSTISQLKPNVCIVGSGPAGFYCA 29
M + I I+G+G AG +CA
Sbjct: 1 MSQYSENI--------IIGAGAAGLFCA 20
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding
subunit); electron transport(flavocytochrome); HET: FAD
HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5
c.3.1.5 d.87.1.1
Length = 401
Score = 27.4 bits (61), Expect = 8.1
Identities = 12/54 (22%), Positives = 16/54 (29%), Gaps = 10/54 (18%)
Query: 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP----------VPFGLVRY 56
V +VG G G A+ I P V + E V G +
Sbjct: 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKL 55
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 27.8 bits (61), Expect = 8.1
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEK 46
+VG+GP G A ++ L + V + EK
Sbjct: 92 NTKCLVVGAGPCGLRAAVELALLGAR--VVLVEK 123
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP,
oxidoreductase, phosphoprotein, redox-A center; HET:
FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Length = 338
Score = 27.5 bits (62), Expect = 8.1
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 16 VCIVGSGPAGF 26
V I+GSGPA
Sbjct: 25 VTIIGSGPAAH 35
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 27.5 bits (62), Expect = 8.6
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52
+ I+G GP G + A + S I E LP G
Sbjct: 10 ITIIGGGPVGLFTAFY-GGMRQASVK-IIESLPQLGG 44
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD;
2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB:
1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Length = 320
Score = 27.1 bits (61), Expect = 9.4
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 15 NVCIVGSGPAGF 26
+ I+GSGPAG+
Sbjct: 7 KLLILGSGPAGY 18
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 27.2 bits (59), Expect = 9.8
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 157 ILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLS 192
+LG G V +L ++ T S +KLS
Sbjct: 8 MLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLS 43
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.393
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,861,151
Number of extensions: 353830
Number of successful extensions: 801
Number of sequences better than 10.0: 1
Number of HSP's gapped: 781
Number of HSP's successfully gapped: 96
Length of query: 388
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 293
Effective length of database: 4,049,298
Effective search space: 1186444314
Effective search space used: 1186444314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.0 bits)