RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4525
(388 letters)
>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial
p450 systems {Cow (Bos taurus) [TaxId: 9913]}
Length = 225
Score = 158 bits (400), Expect = 3e-47
Identities = 100/224 (44%), Positives = 134/224 (59%), Gaps = 16/224 (7%)
Query: 115 KKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSP 174
+ L+IPGE+ + SAR+FVGWYNGLPE+ L L C+ A ILGQGNVA+DVARILL+P
Sbjct: 2 QALDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTP 61
Query: 175 VDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQ 234
D L+ TDITE +L L SR+K+V +VGRRG LQVAFTIKE REM +LP + +
Sbjct: 62 PDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPAD 121
Query: 235 LCGVHEASATLARPRKRLTELILKTS------NPDESKSNCSKYFRPIFLRSPTEFKLND 288
G+ + ARPRKRL EL+L+T+ +++ S+ + F RSP + +
Sbjct: 122 FLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSP 181
Query: 289 NG-AITGINF---------ANQQALVTEDTELIPSGIAFRSIGY 322
+G GI +A+ T D E +P G+ SIGY
Sbjct: 182 DGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY 225
>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 216
Score = 153 bits (387), Expect = 3e-45
Identities = 74/220 (33%), Positives = 109/220 (49%), Gaps = 15/220 (6%)
Query: 114 DKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLS 173
D+ LNIPGED I+A FVGWYN P + L A ++G GNVA+DVARILL+
Sbjct: 1 DRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLT 60
Query: 174 PVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNE 233
D L TDI +H+LE L I+ V +VGRRG LQ AFT E RE+ L V V
Sbjct: 61 DPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPA 120
Query: 234 QLCGVH-EASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAI 292
+L G+ E +A + + K+ +++ ++ + + R +F + ++ +
Sbjct: 121 ELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHR----RMVFRFLTSPIEIKGKRKV 176
Query: 293 TGINFA----------NQQALVTEDTELIPSGIAFRSIGY 322
I A T + E +P+ + RS+GY
Sbjct: 177 ERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGY 216
>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of
mitochondrial p450 systems {Cow (Bos taurus) [TaxId:
9913]}
Length = 230
Score = 101 bits (253), Expect = 8e-26
Identities = 71/177 (40%), Positives = 96/177 (54%), Gaps = 1/177 (0%)
Query: 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFT 73
P +C+VGSGPAGFY AQ +LK ++ VDIYEK VPFGLVR+GVAPDHPEVKNVINTFT
Sbjct: 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFT 61
Query: 74 KTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSF 133
+T + R FYGN+ +G+D+++ +L +AYHAVVL+YGA++ + P +
Sbjct: 62 QTARSDRCAFYGNVEVGRDVTVQELQDAYHAVVLSYGAEDKSRPIDPSVPFDPKLGVVPN 121
Query: 134 -VGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLE 189
G +P I + +ILL +
Sbjct: 122 MEGRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQDLKAGHLPSGPRPGSA 178
Score = 72.3 bits (176), Expect = 3e-15
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 343 KEGVPVVTWEGWKAIDKEETERGKLKGKPREKIISIEEMISVSGN 387
GV V++ W+ +D EE RG+ GKPREK++ +EM+ + G+
Sbjct: 186 SRGVWPVSFSDWEKLDAEEVSRGQASGKPREKLLDPQEMLRLLGH 230
>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 239
Score = 100 bits (250), Expect = 3e-25
Identities = 63/247 (25%), Positives = 100/247 (40%), Gaps = 25/247 (10%)
Query: 13 KP-NVCIVGSGPAGFYCAQQILKLLPQST-----VDIYEKLPVPFGLVRYGVAPDHPEVK 66
+P + IVGSGP+ F+ A +LK + VD+ E LP P+GLVR GVAPDHP++K
Sbjct: 1 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIK 60
Query: 67 NVINTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKN 126
++ F KT ++PR F+GN+ +G+ + G+L+ Y AV+ GA +
Sbjct: 61 SISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSRGVPTPGLPFDDQ 120
Query: 127 IISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEH 186
+ + G NG P + + I A D L + L +
Sbjct: 121 SGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTL---IKNLGNAKEGAE 177
Query: 187 SLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLA 246
+ + + R ++ H Q + E+ A
Sbjct: 178 CKSFPEDHADQVADWLAARQ-----------PKLVTSAHWQVIDAFER-----AAGEPHG 221
Query: 247 RPRKRLT 253
RPR +L
Sbjct: 222 RPRVKLA 228
Score = 68.2 bits (165), Expect = 9e-14
Identities = 14/62 (22%), Positives = 27/62 (43%)
Query: 324 SRCVDSDIPFNEKSCTVIPKEGVPVVTWEGWKAIDKEETERGKLKGKPREKIISIEEMIS 383
+ C ++ + +VT W+ ID E G+ G+PR K+ S+ E++
Sbjct: 176 AECKSFPEDHADQVADWLAARQPKLVTSAHWQVIDAFERAAGEPHGRPRVKLASLAELLR 235
Query: 384 VS 385
+
Sbjct: 236 IG 237
>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase,
middle domain {Escherichia coli [TaxId: 562]}
Length = 179
Score = 56.3 bits (135), Expect = 4e-10
Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 22/157 (14%)
Query: 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYG-VAPDHPEVKNVINT 71
K N+ +VG+GPAG A V +++ G P E +
Sbjct: 43 KKNLAVVGAGPAGLAFAINAAA--RGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRY 100
Query: 72 FTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISAR 131
+ + + V N + D A+ +L G N + GK
Sbjct: 101 YRRMIEVTGVTLKLNHTVTADQ-----LQAFDETILASGIPNRALAQPLIDSGKT----- 150
Query: 132 SFVGWYNGLPEDASLDLSLDCEEATILGQG-NVAMDV 167
V G D++++ + + QG +A+++
Sbjct: 151 --VHLIGG------CDVAMELDARRAIAQGTRLALEI 179
>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine
dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 196
Score = 52.4 bits (124), Expect = 1e-08
Identities = 26/155 (16%), Positives = 45/155 (29%), Gaps = 4/155 (2%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKT 75
+ ++G+GPA CA L L S + I+EK GL + V
Sbjct: 7 IALLGAGPASISCASF-LARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELM 65
Query: 76 GD-NPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFV 134
D ++ ++ + Y A + G + E I R +
Sbjct: 66 KDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDL 125
Query: 135 GWYNGLPEDASLDLSLDCEEATILGQGNVAMDVAR 169
+ S I+G N ++
Sbjct: 126 PEVDPETMQTSEPWVFAG--GDIVGMANTTVESVN 158
>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 311
Score = 44.5 bits (104), Expect = 1e-05
Identities = 24/120 (20%), Positives = 31/120 (25%), Gaps = 14/120 (11%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYG-VAPDHPEVKNVINTFTK 74
V IVG+G +G A I K P V I E P G G ++ + F +
Sbjct: 53 VIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQ 112
Query: 75 TGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFV 134
L L K L +P N V
Sbjct: 113 -------------ELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLV 159
>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale
cress(Arabidopsis thaliana) [TaxId: 3702]}
Length = 278
Score = 43.3 bits (101), Expect = 3e-05
Identities = 25/168 (14%), Positives = 49/168 (29%), Gaps = 7/168 (4%)
Query: 7 STISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYG--VAPDHPE 64
I+ + +V +VG+G AG A + + P V I E+ P G G +
Sbjct: 27 DMITYAETDVVVVGAGSAGLSAAYE-ISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIV 85
Query: 65 VKNVINTFTKTGDNPRV--NFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGE 122
K + G + S V + A + L + G
Sbjct: 86 RKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGN 145
Query: 123 DGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARI 170
+++ + V + ++ + + G+ A
Sbjct: 146 RVGGVVTNWALVAQNHHTQSCMD-PNVMEAKI-VVSSCGHDGPFGATG 191
>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase
SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}
Length = 335
Score = 42.7 bits (99), Expect = 4e-05
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY----GVAPDHPEVKNVINT 71
+ I+G+GP+G A+ +L V ++E+ P G+ Y P ++ T
Sbjct: 7 IAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTT 66
Query: 72 FTKTGDNPRVNFYGNI 87
G + +
Sbjct: 67 EPIVGPAALPVYPSPL 82
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea
mays) [TaxId: 4577]}
Length = 347
Score = 41.9 bits (96), Expect = 7e-05
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55
P V +VG+G +G A++ L + + I E G +
Sbjct: 1 PRVIVVGAGMSGISAAKR-LSEAGITDLLILEATDHIGGRMH 41
>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus
faecalis [TaxId: 1351]}
Length = 198
Score = 37.9 bits (86), Expect = 0.001
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50
V ++GS G+ +++L L P + + YEK
Sbjct: 3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI 37
>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase,
middle domain {Methylophilus methylotrophus, w3a1
[TaxId: 17]}
Length = 233
Score = 37.5 bits (85), Expect = 0.001
Identities = 23/163 (14%), Positives = 48/163 (29%), Gaps = 16/163 (9%)
Query: 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTF 72
K +V IVG+GP+G A+ +++ + + G + A + +
Sbjct: 49 KDSVLIVGAGPSGSEAARVLMESGYTVH--LTDTAEKIGGHLNQVAALPGLGEWSYHRDY 106
Query: 73 TKTGDNPR----VNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNII 128
+T + + L V++ GA ++ L + ++
Sbjct: 107 RETQITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIATGA-SECTLWNELKARESEW 165
Query: 129 SARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARIL 171
+ G Y + I VAR +
Sbjct: 166 AENDIKGIYL---------IGDAEAPRLIADATFTGHRVAREI 199
>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase
DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}
Length = 265
Score = 37.0 bits (84), Expect = 0.003
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 10 SQLKPNVCIVGSGPAGFYCAQQILKLLPQS--TVDIYEKLPVPFGLVRYGVA 59
S + +VG +G A +L + VD+YE+ P P G+
Sbjct: 1 SPTTDRIAVVGGSISGLTAAL----MLRDAGVDVDVYERSPQPLSGFGTGIV 48
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase
{Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 373
Score = 36.7 bits (83), Expect = 0.004
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55
V ++G+G +G A ++ V ++E G +R
Sbjct: 4 VAVIGAGVSGLAAAYKLKIHGLN--VTVFEAEGKAGGKLR 41
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase
{Myxococcus xanthus [TaxId: 34]}
Length = 347
Score = 36.7 bits (83), Expect = 0.004
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 2/49 (4%)
Query: 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHP 63
NV +VG G +G A + + E G V +
Sbjct: 2 NVAVVGGGISGLAVAHHLRSRGTD--AVLLESSARLGGAVGTHALAGYL 48
>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 288
Score = 36.2 bits (82), Expect = 0.004
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50
++ I G+G G CA L V + E
Sbjct: 3 DILIAGAGIGGLSCALA-LHQAGIGKVTLLESSSEI 37
>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide
dehydrogenase, FCSD, flavin-binding subunit {Purple
phototrophic bacterium (Chromatium vinosum) [TaxId:
1049]}
Length = 186
Score = 35.5 bits (80), Expect = 0.005
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48
V +VG G G A+ I P V + E
Sbjct: 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37
>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide
dehydrogenase {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 233
Score = 35.4 bits (80), Expect = 0.006
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 5/82 (6%)
Query: 15 NVCIVGSGPAGFYCAQQILKL-LPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFT 73
+ I+G GPAG+ A + V + + + V P K I +
Sbjct: 3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPS----KTFIASTG 58
Query: 74 KTGDNPRVNFYGNICLGQDISL 95
+ R G D +
Sbjct: 59 LRTELRRAPHLGFHIDFDDAKI 80
>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase
{Thermobifida fusca [TaxId: 2021]}
Length = 298
Score = 34.8 bits (79), Expect = 0.013
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDH 62
V +VG+G +G Y ++ +L V + E G+ + P
Sbjct: 10 VLVVGAGFSGLYALYRLRELGRS--VHVIETAGDVGGVWYWNRYPGA 54
>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor
(AIF) {Human (Homo sapiens) [TaxId: 9606]}
Length = 213
Score = 34.3 bits (77), Expect = 0.013
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 18 IVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50
++G G A F A+ I P + V I + P
Sbjct: 9 LIGGGTAAFAAARSIRARDPGARVLIVSEDPEL 41
>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 162
Score = 33.7 bits (76), Expect = 0.016
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 11/58 (18%)
Query: 115 KKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILL 172
+ I G D ++S L + A + + I+G G + D A L
Sbjct: 3 RTPPIDGIDHPKVLSYLDV------LRDKAPVG-----NKVAIIGCGGIGFDTAMYLS 49
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone
demethylase 1, LSD1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 449
Score = 34.9 bits (78), Expect = 0.017
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55
V I+GSG +G A+Q+ V + E G V
Sbjct: 5 TGKVIIIGSGVSGLAAARQLQSFGMD--VTLLEARDRVGGRVA 45
>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate
hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}
Length = 292
Score = 34.1 bits (77), Expect = 0.019
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS--TVDIYEKLPVPFGLVRYGVAPDHPEVKNVI 69
+K V I+G+GP+G Q LL ++ I E+ + L R ++
Sbjct: 1 MKTQVAIIGAGPSGLLLGQ----LLHKAGIDNVILERQTPDYVLGRIRAGVLEQ---GMV 53
Query: 70 NTFTKTGDNPRVNFYGNICLGQDISLG 96
+ + G + R+ G + G +I+
Sbjct: 54 DLLREAGVDRRMARDGLVHEGVEIAFA 80
>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 298
Score = 34.0 bits (77), Expect = 0.021
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55
+ IVGSG G CA ++ KL V + EK G
Sbjct: 3 DYIIVGSGLFGAVCANELKKL--NKKVLVIEKRNHIGGNAY 41
>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase
{Escherichia coli [TaxId: 562]}
Length = 305
Score = 34.1 bits (77), Expect = 0.022
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 7 STISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52
+T+ + +V I+GSG AG A L+L Q V + K PV G
Sbjct: 1 NTLPEHSCDVLIIGSGAAGLSLA---LRLADQHQVIVLSKGPVTEG 43
>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase
{Escherichia coli [TaxId: 562]}
Length = 311
Score = 34.2 bits (77), Expect = 0.023
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49
+ IVG+G AG A + P + + + K+
Sbjct: 8 LAIVGAGGAGLRAAIAAAQANPNAKIALISKVYP 41
>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase
{Soil-living yeast (Trichosporon cutaneum) [TaxId:
5554]}
Length = 360
Score = 33.9 bits (76), Expect = 0.030
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQS---TVDIYEKLPVP 50
V IVG+GPAG A+ + + + Q V I +K
Sbjct: 10 VLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK 47
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan
pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Length = 370
Score = 33.2 bits (74), Expect = 0.049
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55
+V IVG+G AG A + Q V + E P G VR
Sbjct: 32 HVVIVGAGMAGLSAAYVLAGAGHQ--VTVLEASERPGGRVR 70
>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
putrefaciens [TaxId: 24]}
Length = 322
Score = 32.6 bits (73), Expect = 0.063
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQ-STVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTK 74
V I+GSG AG A + + V + EK P+P G + +
Sbjct: 26 VVIIGSGGAGLAAA---VSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGI 82
Query: 75 TGDNPRVNFYGNICLGQDI 93
D ++ + G++I
Sbjct: 83 E-DKKQIMIDDTMKGGRNI 100
>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin
reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Length = 183
Score = 32.0 bits (71), Expect = 0.063
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
Query: 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINT 71
LK V ++G+G A ++ + Q + + R ++ D +
Sbjct: 2 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPY-DRPPLSKDFMAHGDAEKI 60
Query: 72 FTKTGDNPRVNFY 84
P V +
Sbjct: 61 RLDCKRAPEVEWL 73
>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 308
Score = 32.7 bits (73), Expect = 0.070
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQ-STVDIYEKLPVPFG 52
V +VGSG AGF A + + V + EK PV G
Sbjct: 19 VVVVGSGGAGFSAA---ISATDSGAKVILIEKEPVIGG 53
>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase,
N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}
Length = 314
Score = 32.5 bits (73), Expect = 0.086
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55
+ IVG+G +G +Q+ + V I ++ G
Sbjct: 5 ILIVGAGFSGAVIGRQLAEK--GHQVHIIDQRDHIGGNSY 42
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 32.0 bits (71), Expect = 0.10
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55
+V +VG G +G A+ + V + E G
Sbjct: 1 DVVVVGGGISGMAAAKLLHDS--GLNVVVLEARDRVGGRTY 39
>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus
cereus [TaxId: 1396]}
Length = 251
Score = 31.9 bits (71), Expect = 0.11
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYG 57
V ++G GP+G A + + V + +K +
Sbjct: 5 VIVIGGGPSGLMAAIGAAEE--GANVLLLDKGNKLGRKLAIS 44
>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase
{Pyrococcus furiosus [TaxId: 2261]}
Length = 167
Score = 31.2 bits (69), Expect = 0.12
Identities = 29/158 (18%), Positives = 48/158 (30%), Gaps = 2/158 (1%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKT 75
V IVG+GP GF A+Q+ + + +D ++ + +A P + +
Sbjct: 3 VVIVGNGPGGFELAKQLSQTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWY 62
Query: 76 GDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVG 135
D + V N+ I + R +
Sbjct: 63 RKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGRGILI 122
Query: 136 WYNGLPEDASLDLSLDCEE--ATILGQGNVAMDVARIL 171
N + DC E I G AM+ AR+L
Sbjct: 123 DDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVL 160
>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase
{Pseudomonas putida [TaxId: 303]}
Length = 185
Score = 31.3 bits (69), Expect = 0.12
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50
NV IVG+G AG A + + + + V
Sbjct: 5 NVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVI 40
>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 317
Score = 30.7 bits (68), Expect = 0.24
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQ-STVDIYEKLPVPFG 52
V +VG+G AGF + L + V + +K P G
Sbjct: 22 VLVVGAGSAGFNAS---LAAKKAGANVILVDKAPFSGG 56
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase,
N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
Length = 268
Score = 30.4 bits (67), Expect = 0.28
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52
+ V ++GSG G A + + V I +
Sbjct: 6 QKRVVVLGSGVIGLSSALILARKGYS--VHILARDLPEDV 43
>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933
{Haemophilus influenzae [TaxId: 727]}
Length = 253
Score = 30.6 bits (68), Expect = 0.28
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50
I+G+G AG +CA Q+ KL +V +++
Sbjct: 7 NIIIGAGAAGLFCAAQLAKL--GKSVTVFDNGKKI 39
>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 336
Score = 30.5 bits (67), Expect = 0.30
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 11/52 (21%)
Query: 2 MKRVYSTISQLKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLPVPFG 52
MK Y + ++G G AG A + + + + +PV
Sbjct: 1 MKVQYC-------DSLVIGGGLAGLRAA---VATQQKGLSTIVLSLIPVKRS 42
>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer
flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 380
Score = 29.8 bits (66), Expect = 0.51
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQS----TVDIYEK 46
V IVG+GPAG A ++ +L Q V + EK
Sbjct: 35 VVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEK 69
>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A
subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 356
Score = 29.6 bits (65), Expect = 0.60
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQS--TVDIYEKLPVPFG 52
+ I+G G +G A + V + EK V
Sbjct: 24 ILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERS 62
>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide
reductase subunit F (AhpF), C-terminal domains
{Escherichia coli [TaxId: 562]}
Length = 184
Score = 29.3 bits (64), Expect = 0.60
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 15 NVCIVGSGPAGFYCA 29
+V IVGSGPAG A
Sbjct: 3 DVLIVGSGPAGAAAA 17
>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase
{Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 192
Score = 29.1 bits (64), Expect = 0.72
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 16 VCIVGSGPAGFYCA 29
+CIVGSGPA A
Sbjct: 8 LCIVGSGPAAHTAA 21
>d1lyva_ c.45.1.2 (A:) Protein-tyrosine phosphatase YopH, catalytic
domain {Yersinia enterocolitica [TaxId: 630]}
Length = 283
Score = 29.0 bits (64), Expect = 0.92
Identities = 3/29 (10%), Positives = 7/29 (24%)
Query: 17 CIVGSGPAGFYCAQQILKLLPQSTVDIYE 45
G G + S + + +
Sbjct: 218 SRAGVGRTAQLIGAMCMNDSRNSQLSVED 246
>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase
{Arthrobacter globiformis [TaxId: 1665]}
Length = 305
Score = 29.0 bits (63), Expect = 0.97
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52
P + I+G+G G A + L + + + ++ P+
Sbjct: 2 PRIVIIGAGIVGTNLADE-LVTRGWNNITVLDQGPLNMP 39
>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide
dehydrogenase {Pseudomonas putida [TaxId: 303]}
Length = 220
Score = 28.4 bits (62), Expect = 1.1
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 12 LKPNVCIVGSGPAGFYCAQQILKL 35
++ + I+G GP G+ A + +L
Sbjct: 4 IQTTLLIIGGGPGGYVAAIRAGQL 27
>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase
{Escherichia coli [TaxId: 562]}
Length = 190
Score = 28.2 bits (62), Expect = 1.3
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 16 VCIVGSGPAGFYCA 29
+ I+GSGPAG+ A
Sbjct: 8 LLILGSGPAGYTAA 21
>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase
{Escherichia coli [TaxId: 562]}
Length = 330
Score = 27.9 bits (61), Expect = 2.2
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49
++G+G AG A QI + T + K+
Sbjct: 10 AVVIGAGGAGMRAALQISQSGQ--TCALLSKVFP 41
>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide
dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId:
9913]}
Length = 336
Score = 27.9 bits (60), Expect = 2.4
Identities = 6/40 (15%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55
V ++G+G + + V ++ P G
Sbjct: 9 VIVLGTGLTECILSGIMSVN--GKKVLHMDRNPYYGGESS 46
>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide
dehydrogenase {Azotobacter vinelandii [TaxId: 354]}
Length = 229
Score = 27.3 bits (59), Expect = 2.6
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTF 72
V ++G+GP G+ A + +L + EK G G +
Sbjct: 6 VIVIGAGPGGYVAAIKSAQL--GLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALL 60
>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide
dehydrogenase {Bacillus stearothermophilus [TaxId:
1422]}
Length = 223
Score = 27.1 bits (59), Expect = 3.2
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 15 NVCIVGSGPAGFYCAQQILKL 35
+VG+GP G+ A + +L
Sbjct: 5 ETLVVGAGPGGYVAAIRAAQL 25
>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase
{Plasmodium falciparum [TaxId: 5833]}
Length = 259
Score = 27.3 bits (59), Expect = 3.2
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 16 VCIVGSGPAGFYCA 29
+ ++G G G A
Sbjct: 4 LIVIGGGSGGMAAA 17
>d2al6a3 d.15.1.4 (A:31-130) Focal adhesion kinase 1 {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 100
Score = 25.9 bits (57), Expect = 3.5
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 51 FGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYG 85
++R+G A D V+ +I V YG
Sbjct: 23 ASIIRHGDATD---VRGIIQKIVDCHKVKNVACYG 54
>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin
reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 235
Score = 27.0 bits (58), Expect = 3.9
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 16 VCIVGSGPAGFYCA 29
+ I+G G G A
Sbjct: 6 LIIIGGGSGGLAAA 19
>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide
dehydrogenase {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 233
Score = 26.8 bits (58), Expect = 4.0
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 16 VCIVGSGPAGFYCA 29
V I+G GPAG+ A
Sbjct: 8 VVIIGGGPAGYVAA 21
>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase
{Escherichia coli [TaxId: 562]}
Length = 217
Score = 26.8 bits (58), Expect = 4.0
Identities = 3/16 (18%), Positives = 5/16 (31%)
Query: 16 VCIVGSGPAGFYCAQQ 31
+G G G +
Sbjct: 5 YIAIGGGSGGIASINR 20
>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide
dehydrogenase {Garden pea (Pisum sativum) [TaxId:
3888]}
Length = 221
Score = 26.7 bits (58), Expect = 4.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 16 VCIVGSGPAGFYCAQQILKL 35
V I+G GP G+ A + +L
Sbjct: 6 VVIIGGGPGGYVAAIKAAQL 25
>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide
dehydrogenase {Neisseria meningitidis [TaxId: 487]}
Length = 229
Score = 26.8 bits (58), Expect = 4.6
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 16 VCIVGSGPAGFYCAQQILKL 35
V ++G GP G+ A
Sbjct: 9 VVVLGGGPGGYSAAFAAADE 28
>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl
coenzyme M oxidoreductase/carboxylase {Xanthobacter
sp., py2 [TaxId: 35809]}
Length = 261
Score = 26.8 bits (58), Expect = 4.7
Identities = 6/46 (13%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAP 60
+ +G G AG + + L+ + + + + P
Sbjct: 44 DAIFIGGGAAGRFGS-AYLRAMGGRQLIVDRWPFLGGSCPHNACVP 88
>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 221
Score = 26.4 bits (57), Expect = 5.3
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50
++G G G A++ +L + + E +
Sbjct: 6 YLVIGGGSGGLASARRAAEL--GARAAVVESHKLG 38
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 25.9 bits (56), Expect = 5.8
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 10/91 (10%)
Query: 2 MKRV---YSTISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGV 58
+KR+ + + P C G + Q + P+S Y+
Sbjct: 3 LKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPES---PYQGGVFFL---TIHF 56
Query: 59 APDHPEVKNVINTFTKTGDNPRVNFYGNICL 89
D+P K FT +P +N G+ICL
Sbjct: 57 PTDYPF-KPPKVAFTTRIYHPNINSNGSICL 86
>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase
{Trypanosoma cruzi [TaxId: 5693]}
Length = 238
Score = 26.2 bits (56), Expect = 6.4
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 16 VCIVGSGPAGFYCA 29
+ ++G+G G A
Sbjct: 6 LVVIGAGSGGLEAA 19
>d2cbia3 d.92.2.3 (A:41-178) Hyaluronidase N-terminal domain
{Clostridium perfringens [TaxId: 1502]}
Length = 138
Score = 25.9 bits (56), Expect = 6.4
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 15 NVCIVGSGPAG-FYCAQQILKLLPQSTV 41
+ I G G FY Q +L+ +S +
Sbjct: 101 KIAIEGKDGDGTFYGVQTFKQLVKESNI 128
>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase
{Crithidia fasciculata [TaxId: 5656]}
Length = 240
Score = 26.1 bits (56), Expect = 6.7
Identities = 3/14 (21%), Positives = 7/14 (50%)
Query: 16 VCIVGSGPAGFYCA 29
+ ++G+G G
Sbjct: 6 LVVIGAGSGGLEAG 19
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.135 0.393
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,425,872
Number of extensions: 66196
Number of successful extensions: 222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 69
Length of query: 388
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 301
Effective length of database: 1,213,086
Effective search space: 365138886
Effective search space used: 365138886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)