BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4528
(87 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MLP|A Chain A, Early B-Cell Factor 1 (Ebf1) Bound To Dna
pdb|3MLP|B Chain B, Early B-Cell Factor 1 (Ebf1) Bound To Dna
pdb|3MLP|E Chain E, Early B-Cell Factor 1 (Ebf1) Bound To Dna
pdb|3MLP|F Chain F, Early B-Cell Factor 1 (Ebf1) Bound To Dna
Length = 402
Score = 100 bits (250), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 45/52 (86%), Positives = 49/52 (94%)
Query: 2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ 53
+LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE+ILKRAADL EALY MP NNQ
Sbjct: 316 ALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYGMPHNNQ 367
>pdb|3N50|A Chain A, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
DOMAINS
pdb|3N50|B Chain B, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
DOMAINS
pdb|3N50|C Chain C, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
DOMAINS
pdb|3N50|D Chain D, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
DOMAINS
pdb|3N50|E Chain E, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
DOMAINS
pdb|3N50|F Chain F, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
DOMAINS
Length = 159
Score = 99.4 bits (246), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 44/52 (84%), Positives = 49/52 (94%)
Query: 2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ 53
+LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE++LKRAADL EALY MP NNQ
Sbjct: 91 ALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYGMPHNNQ 142
>pdb|3MUJ|A Chain A, Early B-Cell Factor 3 (Ebf3) IptTIG AND DIMERIZATION
HELICES
pdb|3MUJ|B Chain B, Early B-Cell Factor 3 (Ebf3) IptTIG AND DIMERIZATION
HELICES
Length = 138
Score = 92.8 bits (229), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 41/48 (85%), Positives = 46/48 (95%)
Query: 2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMP 49
+LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE++LKRAADL EALY MP
Sbjct: 90 ALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYGMP 137
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 1 MSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQLP 55
MSL P G +RL +L + + KL +I + +DL +AL+ NN L
Sbjct: 145 MSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSDLTDALFEARLNNMLS 199
>pdb|3T9L|A Chain A, Structure Of N-Terminal Dusp-Ubl Domains Of Human Usp15
Length = 230
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 55 PLPAPPRSPHHFNSYTGQLNVTVQENGNGQWP 86
PL P + Y GQ+ V Q+N +G WP
Sbjct: 190 PLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWP 221
>pdb|4A3P|A Chain A, Structure Of Usp15 Dusp-Ubl Deletion Mutant
Length = 217
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 55 PLPAPPRSPHHFNSYTGQLNVTVQENGNGQWP 86
PL P + Y GQ+ V Q+N +G WP
Sbjct: 184 PLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWP 215
>pdb|4A3O|A Chain A, Crystal Structure Of The Usp15 Dusp-Ubl Monomer
pdb|4A3O|B Chain B, Crystal Structure Of The Usp15 Dusp-Ubl Monomer
Length = 220
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 55 PLPAPPRSPHHFNSYTGQLNVTVQENGNGQWP 86
PL P + Y GQ+ V Q+N +G WP
Sbjct: 187 PLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWP 218
>pdb|3PPA|A Chain A, Structure Of The Dusp-Ubl Domains Of Usp15
Length = 237
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 55 PLPAPPRSPHHFNSYTGQLNVTVQENGNGQWP 86
PL P + Y GQ+ V Q+N +G WP
Sbjct: 204 PLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWP 235
>pdb|3PV1|A Chain A, Crystal Structure Of The Usp15 Dusp-Ubl Domains
pdb|3PV1|B Chain B, Crystal Structure Of The Usp15 Dusp-Ubl Domains
Length = 225
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 55 PLPAPPRSPHHFNSYTGQLNVTVQENGNGQWP 86
PL P + Y GQ+ V Q+N +G WP
Sbjct: 192 PLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWP 223
>pdb|1UB7|A Chain A, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|B Chain B, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|C Chain C, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|D Chain D, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus
Length = 322
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 4 NEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALY 46
+E T D F+ ++ L+ RHPG E + I+ A + +AL+
Sbjct: 47 DEYTSDLAFKAVEDLLRRHPGALEGVDAVIV---ATNTPDALF 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,081,993
Number of Sequences: 62578
Number of extensions: 110469
Number of successful extensions: 178
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 166
Number of HSP's gapped (non-prelim): 12
length of query: 87
length of database: 14,973,337
effective HSP length: 55
effective length of query: 32
effective length of database: 11,531,547
effective search space: 369009504
effective search space used: 369009504
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)