BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4528
(87 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P56721|COLL_DROME Transcription factor collier OS=Drosophila melanogaster GN=kn PE=2
SV=2
Length = 575
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 67/86 (77%), Gaps = 9/86 (10%)
Query: 2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQLPLPAPPR 61
+LNEPTIDYGFQRLQKLIPRHPGDPEKL KEIILKRAADL EALYSMPR+ P
Sbjct: 384 ALNEPTIDYGFQRLQKLIPRHPGDPEKLQKEIILKRAADLVEALYSMPRS--------PG 435
Query: 62 SPHHFNSYTGQLNVTVQENGNGQWPE 87
FNSY GQL V+VQ+ G+GQW E
Sbjct: 436 GSTGFNSYAGQLAVSVQD-GSGQWTE 460
>sp|Q63398|COE1_RAT Transcription factor COE1 OS=Rattus norvegicus GN=Ebf1 PE=1 SV=2
Length = 584
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 66/104 (63%), Gaps = 26/104 (25%)
Query: 2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ-------- 53
+LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE+ILKRAADL EALY MP NNQ
Sbjct: 339 ALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYGMPHNNQEIILKRAA 398
Query: 54 --------LP-----LPAPPRSPHH-----FNSYTGQLNVTVQE 79
+P LPA + H NS++GQL V V E
Sbjct: 399 DIAEALYSVPRNHNQLPALANTSVHAGMMGVNSFSGQLAVNVSE 442
>sp|Q07802|COE1_MOUSE Transcription factor COE1 OS=Mus musculus GN=Ebf1 PE=1 SV=1
Length = 591
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 66/104 (63%), Gaps = 26/104 (25%)
Query: 2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ-------- 53
+LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE+ILKRAADL EALY MP NNQ
Sbjct: 346 ALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYGMPHNNQEIILKRAA 405
Query: 54 --------LP-----LPAPPRSPHH-----FNSYTGQLNVTVQE 79
+P LPA + H NS++GQL V V E
Sbjct: 406 DIAEALYSVPRNHNQLPALANTSVHAGMMGVNSFSGQLAVNVSE 449
>sp|Q9UH73|COE1_HUMAN Transcription factor COE1 OS=Homo sapiens GN=EBF1 PE=1 SV=2
Length = 591
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 66/104 (63%), Gaps = 26/104 (25%)
Query: 2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ-------- 53
+LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE+ILKRAADL EALY MP NNQ
Sbjct: 346 ALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYGMPHNNQEIILKRAA 405
Query: 54 --------LP-----LPAPPRSPHH-----FNSYTGQLNVTVQE 79
+P LPA + H NS++GQL V V E
Sbjct: 406 DIAEALYSVPRNHNQLPALANTSVHAGMMGVNSFSGQLAVNVSE 449
>sp|O73742|COE3_XENLA Transcription factor COE3 OS=Xenopus laevis GN=coe3 PE=2 SV=2
Length = 598
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/104 (52%), Positives = 66/104 (63%), Gaps = 26/104 (25%)
Query: 2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ-------- 53
+LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE++LKRAADL EALY MP NNQ
Sbjct: 348 ALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYGMPHNNQEIILKRAA 407
Query: 54 --------LP-----LPAPPRSPHH-----FNSYTGQLNVTVQE 79
+P +P+ +P H NS++ QL V V E
Sbjct: 408 DIAEALYSVPRNHNQIPSLANTPSHSGMMGVNSFSSQLAVNVSE 451
>sp|Q9HAK2|COE2_HUMAN Transcription factor COE2 OS=Homo sapiens GN=EBF2 PE=1 SV=4
Length = 575
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 66/108 (61%), Gaps = 26/108 (24%)
Query: 2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ-------- 53
+LNEPTIDYGFQRLQK+IPRHPGDPE+L KE++LKRAADL EALY P NNQ
Sbjct: 337 ALNEPTIDYGFQRLQKVIPRHPGDPERLAKEMLLKRAADLVEALYGTPHNNQDIILKRAA 396
Query: 54 --------LP-----LPAPPRSPHH-----FNSYTGQLNVTVQENGNG 83
+P LPA SP H NSY QL V++ E+ G
Sbjct: 397 DIAEALYSVPRNPSQLPALSSSPAHSGMMGINSYGSQLGVSISESTQG 444
>sp|Q6P4K7|COE2_XENTR Transcription factor coe2 OS=Xenopus tropicalis GN=ebf2 PE=2 SV=1
Length = 575
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 66/105 (62%), Gaps = 26/105 (24%)
Query: 2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ-------- 53
+LNEPTIDYGFQRLQK+IPRHPGDPE+L KE++LKRAADL EALY P NNQ
Sbjct: 338 ALNEPTIDYGFQRLQKVIPRHPGDPERLAKEMLLKRAADLVEALYGTPHNNQDIILKRAA 397
Query: 54 --------LP-----LPAPPRSPHH-----FNSYTGQLNVTVQEN 80
+P +PA SP H NSY GQL V++ E+
Sbjct: 398 DIAEALYSVPRNHNQIPALSSSPVHSGMMGINSYGGQLGVSISES 442
>sp|B7ZRI2|COE2B_XENLA Transcription factor coe2-B OS=Xenopus laevis GN=ebf2-b PE=2 SV=1
Length = 580
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 66/105 (62%), Gaps = 26/105 (24%)
Query: 2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ-------- 53
+LNEPTIDYGFQRLQK+IPRHPGDPE++ KE++LKRAADL EALY P NNQ
Sbjct: 343 ALNEPTIDYGFQRLQKVIPRHPGDPERMAKEMLLKRAADLVEALYGTPHNNQDIILKRAA 402
Query: 54 --------LP-----LPAPPRSPHH-----FNSYTGQLNVTVQEN 80
+P +PA SP H NSY GQL V++ E+
Sbjct: 403 DIAEALYSVPRNHNQIPALSSSPVHSGMMGINSYGGQLGVSISES 447
>sp|Q9H4W6|COE3_HUMAN Transcription factor COE3 OS=Homo sapiens GN=EBF3 PE=1 SV=2
Length = 596
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/52 (84%), Positives = 49/52 (94%)
Query: 2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ 53
+LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE++LKRAADL EALY MP NNQ
Sbjct: 347 ALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYGMPHNNQ 398
>sp|O08792|COE2_MOUSE Transcription factor COE2 OS=Mus musculus GN=Ebf2 PE=1 SV=4
Length = 575
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 66/108 (61%), Gaps = 26/108 (24%)
Query: 2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ-------- 53
+LNEPTIDYGFQRLQK+IPRHPGDPE+L KE++LKRAADL EALY P NNQ
Sbjct: 337 ALNEPTIDYGFQRLQKVIPRHPGDPERLAKEMLLKRAADLVEALYGTPHNNQDIILKRAA 396
Query: 54 --------LP-----LPAPPRSPHH-----FNSYTGQLNVTVQENGNG 83
+P +PA SP H NSY QL V++ E+ G
Sbjct: 397 DIAEALYSVPRNPSQIPALSSSPAHSGMMGINSYGSQLGVSISESTQG 444
>sp|O08791|COE3_MOUSE Transcription factor COE3 OS=Mus musculus GN=Ebf3 PE=2 SV=1
Length = 596
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/52 (84%), Positives = 49/52 (94%)
Query: 2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ 53
+LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE++LKRAADL EALY MP NNQ
Sbjct: 347 ALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYGMPHNNQ 398
>sp|Q08DL5|COE2_BOVIN Transcription factor COE2 OS=Bos taurus GN=EBF2 PE=2 SV=1
Length = 575
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 66/108 (61%), Gaps = 26/108 (24%)
Query: 2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ-------- 53
+LNEPTIDYGFQRLQK+IPRHPGDPE+L KE++LKRAADL EALY P NNQ
Sbjct: 337 ALNEPTIDYGFQRLQKVIPRHPGDPERLAKEMLLKRAADLVEALYGTPHNNQDIILKRAA 396
Query: 54 --------LP-----LPAPPRSPHH-----FNSYTGQLNVTVQENGNG 83
+P +PA SP H NSY QL V++ E+ G
Sbjct: 397 DIAEALYSVPRNPSQIPALSSSPAHSGMMGINSYGSQLGVSISESTQG 444
>sp|B7ZRJ4|COE2A_XENLA Transcription factor coe2-A OS=Xenopus laevis GN=ebf2-a PE=2 SV=1
Length = 575
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 68/107 (63%), Gaps = 30/107 (28%)
Query: 2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKE----------------------IILKRAA 39
+LNEPTIDYGFQRLQK++PRHPGDPE+L KE IILKRAA
Sbjct: 338 ALNEPTIDYGFQRLQKVVPRHPGDPERLAKEMLLKRAADLVESLYGAPHNNQDIILKRAA 397
Query: 40 DLAEALYSMPRN-NQLPLPAPPRSPHH-----FNSYTGQLNVTVQEN 80
D+AEALYS+PRN NQ+P + SP H NSY GQL +++ E+
Sbjct: 398 DIAEALYSVPRNHNQIPTLSS--SPVHSGMMGINSYGGQLGISISES 442
>sp|Q8K4J2|COE4_MOUSE Transcription factor COE4 OS=Mus musculus GN=Ebf4 PE=2 SV=1
Length = 599
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/52 (82%), Positives = 50/52 (96%)
Query: 2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ 53
+LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE++LKRAADLAEALY +P +NQ
Sbjct: 340 ALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLAEALYGVPSSNQ 391
>sp|Q9BQW3|COE4_HUMAN Transcription factor COE4 OS=Homo sapiens GN=EBF4 PE=2 SV=2
Length = 602
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/52 (82%), Positives = 50/52 (96%)
Query: 2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQ 53
+LNEPTIDYGFQRLQK+IPRHPGDPE+LPKE++LKRAADLAEALY +P +NQ
Sbjct: 340 ALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLAEALYGVPGSNQ 391
>sp|O93375|COE2_DANRE Transcription factor COE2 OS=Danio rerio GN=coe2 PE=2 SV=1
Length = 579
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 65/107 (60%), Gaps = 28/107 (26%)
Query: 2 SLNEPTIDYGFQRLQKLIPRHPGDPEKLPKE----------------------IILKRAA 39
+LNEPTIDYGFQRLQKLIPRHPGDP+KL KE ++LKRAA
Sbjct: 344 ALNEPTIDYGFQRLQKLIPRHPGDPDKLAKEMLLKRAADVVESLYGNTTSNQDMLLKRAA 403
Query: 40 DLAEALYSMPRNNQLPLPAPPRSPHH-----FNSYTGQLNVTVQENG 81
D+AEALYS+PR + L A P SP H +SY QL V++ E G
Sbjct: 404 DIAEALYSVPRPHS-QLQAMPSSPVHGSVMGLSSYPTQLGVSIGEPG 449
>sp|Q93705|UNC3_CAEEL Transcription factor unc-3 OS=Caenorhabditis elegans GN=unc-3 PE=2
SV=3
Length = 491
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 45/54 (83%)
Query: 1 MSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQL 54
++L EP I+YGFQRLQKL+P++PGDPE+LPK+ ILKRAA+LAEALY+ L
Sbjct: 356 ITLAEPGIEYGFQRLQKLLPKYPGDPERLPKDQILKRAAELAEALYNRTSTESL 409
>sp|Q71RC2|LARP4_HUMAN La-related protein 4 OS=Homo sapiens GN=LARP4 PE=1 SV=3
Length = 724
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 12 FQRLQKLIPRHPGDPEKLPKEIILK-RAADLAEALYSMPRNNQLPLPAP-PRSPHHFNSY 69
F L P PG ++P E++L+ R +D+ + +Y N +L + P P +
Sbjct: 477 FDLLASNFPPLPGSSSRMPGELVLENRMSDVVKGVYKEKDNEELTISCPVPADEQTECTS 536
Query: 70 TGQLNVTV 77
QLN++
Sbjct: 537 AQQLNMST 544
>sp|Q9SB63|MOS1_ARATH Protein MODIFIER OF SNC1 1 OS=Arabidopsis thaliana GN=MOS1 PE=1
SV=2
Length = 1412
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 46 YSMPRNNQLPLPAPPRSPHHFNSYTGQ 72
Y P N LP P PH +N+++GQ
Sbjct: 385 YGSPSNRDLPFAGRPTGPHAYNNHSGQ 411
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,771,047
Number of Sequences: 539616
Number of extensions: 1462667
Number of successful extensions: 3249
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3206
Number of HSP's gapped (non-prelim): 35
length of query: 87
length of database: 191,569,459
effective HSP length: 57
effective length of query: 30
effective length of database: 160,811,347
effective search space: 4824340410
effective search space used: 4824340410
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)