Query psy4528
Match_columns 87
No_of_seqs 52 out of 54
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 19:28:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4528.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4528hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mlp_A Transcription factor CO 100.0 1.2E-34 4.1E-39 234.0 3.5 64 1-64 315-389 (402)
2 3muj_A Transcription factor CO 100.0 8.2E-34 2.8E-38 203.5 4.6 50 1-50 89-138 (138)
3 3mlp_A Transcription factor CO 97.4 2.7E-05 9.3E-10 63.5 0.0 24 30-53 366-389 (402)
4 2ql2_B Neurod1, neurogenic dif 96.6 0.0023 7.9E-08 39.0 3.8 39 8-47 17-55 (60)
5 2lfh_A DNA-binding protein inh 96.5 0.0027 9.1E-08 40.7 3.8 38 8-46 29-66 (68)
6 1mdy_A Protein (MYOD BHLH doma 96.3 0.004 1.4E-07 38.9 3.7 38 8-47 27-64 (68)
7 1hlo_A Protein (transcription 96.3 0.0028 9.5E-08 39.6 2.8 38 8-47 27-64 (80)
8 3u5v_A Protein MAX, transcript 95.7 0.0026 8.9E-08 40.5 0.8 40 7-46 19-58 (76)
9 1nkp_B MAX protein, MYC proto- 95.7 0.0081 2.8E-07 37.5 2.9 38 8-47 17-54 (83)
10 1nlw_A MAD protein, MAX dimeri 95.6 0.011 3.8E-07 37.6 3.5 38 8-46 16-53 (80)
11 4aya_A DNA-binding protein inh 95.6 0.011 3.8E-07 39.9 3.6 39 8-47 40-78 (97)
12 1nkp_A C-MYC, MYC proto-oncoge 95.5 0.011 3.8E-07 38.0 3.1 38 8-46 21-58 (88)
13 4ath_A MITF, microphthalmia-as 92.7 0.13 4.3E-06 33.9 3.8 40 7-46 6-45 (83)
14 4ati_A MITF, microphthalmia-as 92.2 0.13 4.3E-06 34.6 3.4 39 8-46 42-80 (118)
15 1am9_A Srebp-1A, protein (ster 92.1 0.12 4.3E-06 32.4 3.1 36 8-46 21-56 (82)
16 1an4_A Protein (upstream stimu 92.1 0.04 1.4E-06 32.9 0.7 40 8-47 20-61 (65)
17 1a0a_A BHLH, protein (phosphat 88.3 0.25 8.5E-06 30.0 2.0 40 7-46 16-58 (63)
18 4h10_B Circadian locomoter out 88.0 0.59 2E-05 29.4 3.7 36 8-46 23-58 (71)
19 4h10_A ARYL hydrocarbon recept 83.3 0.42 1.4E-05 30.0 1.2 45 7-51 23-67 (73)
20 3nrd_A Histidine triad (HIT) p 54.3 6.3 0.00022 25.9 1.9 10 18-27 96-105 (135)
21 3i4s_A Histidine triad protein 45.2 14 0.00046 25.1 2.4 28 18-45 99-138 (149)
22 4f3l_A Mclock, circadian locom 43.5 22 0.00077 25.9 3.5 37 8-47 27-63 (361)
23 3i24_A HIT family hydrolase; s 42.8 15 0.00053 24.7 2.4 28 18-45 94-133 (149)
24 3txv_A Probable tagatose 6-pho 32.7 26 0.00089 28.6 2.6 23 24-46 138-160 (450)
25 3ohe_A Histidine triad (HIT) p 30.9 31 0.0011 22.6 2.4 28 18-45 94-133 (137)
26 4f3l_B BMAL1B; BHLH, PAS, circ 28.5 14 0.00049 27.5 0.4 42 8-49 28-69 (387)
27 3p0t_A Uncharacterized protein 28.1 29 0.00099 22.1 1.8 28 18-45 100-134 (138)
28 3ksv_A Uncharacterized protein 26.8 43 0.0015 22.1 2.5 28 18-45 111-146 (149)
29 3lb5_A HIT-like protein involv 25.6 36 0.0012 22.8 2.0 12 18-29 128-139 (161)
30 1whz_A Hypothetical protein; a 23.8 30 0.001 20.0 1.2 8 18-25 40-47 (70)
No 1
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=100.00 E-value=1.2e-34 Score=234.00 Aligned_cols=64 Identities=73% Similarity=1.171 Sum_probs=34.4
Q ss_pred CCCCCCcchhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHhCCCCCCCCCC-----------CCCCCCCC
Q psy4528 1 MSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQLPL-----------PAPPRSPH 64 (87)
Q Consensus 1 ~~lneptIdygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy~~p~n~q~~l-----------~~~p~sp~ 64 (87)
++|||||||||||||||+|||||||||||||||||||||||+|+|||||+|||++| ++.||+|.
T Consensus 315 tALnePtIdygfqRLqK~iPrhpGdpErLpKevilkRaadl~ealy~~p~~nqeiilkrAaDlAeAlys~PR~~~ 389 (402)
T 3mlp_A 315 TALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYGMPHNNQEIILKRAADIAEALYSVPRNHN 389 (402)
T ss_dssp C---CCTTTTTTTTTTTC-----------CHHHHHHHHHHHHHHHTTCC--------------------------
T ss_pred ecCCCCccccchhhhcccCCCCCCChHhChHHHHHHHHHHHHHHhcCCCCCcchhhcccchhhhhhhccCCCCcc
Confidence 37999999999999999999999999999999999999999999999999999997 46777763
No 2
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=99.98 E-value=8.2e-34 Score=203.45 Aligned_cols=50 Identities=82% Similarity=1.376 Sum_probs=47.0
Q ss_pred CCCCCCcchhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHhCCCC
Q psy4528 1 MSLNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPR 50 (87)
Q Consensus 1 ~~lneptIdygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy~~p~ 50 (87)
++|||||||||||||||+|||||||||||||||||||||||+|+|||||+
T Consensus 89 ~~l~ePtId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~~~~~~ 138 (138)
T 3muj_A 89 TALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYGMPH 138 (138)
T ss_dssp ECCCSCCHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHHHCC--
T ss_pred ecCCCCccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHHhCCCC
Confidence 47999999999999999999999999999999999999999999999985
No 3
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=97.36 E-value=2.7e-05 Score=63.46 Aligned_cols=24 Identities=75% Similarity=1.088 Sum_probs=0.0
Q ss_pred hHHHHHHhHHhHHHHHhCCCCCCC
Q psy4528 30 PKEIILKRAADLAEALYSMPRNNQ 53 (87)
Q Consensus 30 pKeiiLkRaadl~ealy~~p~n~q 53 (87)
..|||||||+|||||||++|++..
T Consensus 366 nqeiilkrAaDlAeAlys~PR~~~ 389 (402)
T 3mlp_A 366 NQEIILKRAADIAEALYSVPRNHN 389 (402)
T ss_dssp ------------------------
T ss_pred cchhhcccchhhhhhhccCCCCcc
Confidence 468899999999999999999843
No 4
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=96.60 E-value=0.0023 Score=39.05 Aligned_cols=39 Identities=26% Similarity=0.322 Sum_probs=34.3
Q ss_pred chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHhC
Q psy4528 8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYS 47 (87)
Q Consensus 8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy~ 47 (87)
|.=||++|.+.||-+|. ..+|.|.-+|+.|.+|+..|-.
T Consensus 17 iN~af~~LR~~lP~~~~-~~klSKi~tLr~Ai~YI~~L~~ 55 (60)
T 2ql2_B 17 LNAALDNLRKVVPCYSK-TQKLSKIETLRLAKNYIWALSE 55 (60)
T ss_dssp HHHHHHHHHHTSSSCCS-SSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCC-cCcCCHHHHHHHHHHHHHHHHH
Confidence 45689999999998875 4899999999999999998864
No 5
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=96.51 E-value=0.0027 Score=40.72 Aligned_cols=38 Identities=29% Similarity=0.482 Sum_probs=34.0
Q ss_pred chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHh
Q psy4528 8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALY 46 (87)
Q Consensus 8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy 46 (87)
+.=||.+|.++||-.|.| .+|.|.-+|+.|.+|+..|-
T Consensus 29 lN~aF~~LR~~VP~~p~~-kKLSKiEtLr~Ai~YI~~Lq 66 (68)
T 2lfh_A 29 MNHCYSRLRELVPGVPRG-TQLSQVEILQRVIDYILDLQ 66 (68)
T ss_dssp HHHHHHHHHHHCCCCCTT-CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCC-CCccHHHHHHHHHHHHHHHH
Confidence 456999999999999955 79999999999999999873
No 6
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=96.32 E-value=0.004 Score=38.92 Aligned_cols=38 Identities=29% Similarity=0.517 Sum_probs=33.3
Q ss_pred chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHhC
Q psy4528 8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYS 47 (87)
Q Consensus 8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy~ 47 (87)
|.-||+.|.++||-.| .++|+|.-+|+.|.+|+..|-.
T Consensus 27 iN~af~~LR~~iP~~~--~~KlSKi~tLr~Ai~YI~~L~~ 64 (68)
T 1mdy_A 27 VNEAFETLKRSTSSNP--NQRLPKVEILRNAIRYIEGLQA 64 (68)
T ss_dssp HHHHHHHHHTTSCSCT--TSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCC--CCCCCHHHHHHHHHHHHHHHHH
Confidence 4568999999999776 3799999999999999999864
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=96.25 E-value=0.0028 Score=39.61 Aligned_cols=38 Identities=26% Similarity=0.459 Sum_probs=33.7
Q ss_pred chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHhC
Q psy4528 8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYS 47 (87)
Q Consensus 8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy~ 47 (87)
|--+|..|..+||-.+| +++.|..||+.|.++++.|-.
T Consensus 27 in~~f~~Lr~lvP~~~~--~k~sK~~iL~~Ai~YI~~L~~ 64 (80)
T 1hlo_A 27 IKDSFHSLRDSVPSLQG--EKASRAQILDKATEYIQYMRR 64 (80)
T ss_dssp HHHHHHHHHHHSGGGTT--SCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCC--CCccHHHHHHHHHHHHHHHHH
Confidence 56799999999998775 689999999999999998853
No 8
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=95.72 E-value=0.0026 Score=40.47 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=32.0
Q ss_pred cchhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHh
Q psy4528 7 TIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALY 46 (87)
Q Consensus 7 tIdygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy 46 (87)
.|-.+|..|.++||-+......++|..||+.|.+++..|-
T Consensus 19 ~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq 58 (76)
T 3u5v_A 19 DINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLE 58 (76)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHH
Confidence 3677999999999964422344589999999999999884
No 9
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=95.66 E-value=0.0081 Score=37.51 Aligned_cols=38 Identities=26% Similarity=0.459 Sum_probs=33.5
Q ss_pred chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHhC
Q psy4528 8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYS 47 (87)
Q Consensus 8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy~ 47 (87)
|.-+|..|..+||-.++ +++.|..||+.|.++++.|-.
T Consensus 17 in~~f~~Lr~lvP~~~~--~k~sK~~iL~~Ai~YI~~L~~ 54 (83)
T 1nkp_B 17 IKDSFHSLRDSVPSLQG--EKASRAQILDKATEYIQYMRR 54 (83)
T ss_dssp HHHHHHHHHTTSGGGTT--SCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCC--CCCCHHHHHHHHHHHHHHHHH
Confidence 56799999999998774 689999999999999998853
No 10
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=95.61 E-value=0.011 Score=37.59 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=32.5
Q ss_pred chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHh
Q psy4528 8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALY 46 (87)
Q Consensus 8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy 46 (87)
|--||.+|.++||-.+ +.++.+|..||+.|.+++..|-
T Consensus 16 lk~~f~~Lr~~vP~~~-~~~k~sk~~iL~kA~~yI~~L~ 53 (80)
T 1nlw_A 16 LRLSLEKLKGLVPLGP-DSSRHTTLSLLTKAKLHIKKLE 53 (80)
T ss_dssp HHHHHHHHHHSSCCCS-SSCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCC-CCCCCCHHHHHHHHHHHHHHHH
Confidence 4458999999999664 4589999999999999998874
No 11
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=95.60 E-value=0.011 Score=39.86 Aligned_cols=39 Identities=26% Similarity=0.441 Sum_probs=35.1
Q ss_pred chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHhC
Q psy4528 8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYS 47 (87)
Q Consensus 8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy~ 47 (87)
+.-||.+|.+.+|-.|.| .+|.|.=+|+.|.+|+..|-.
T Consensus 40 lN~AF~~LR~~vP~~p~~-kKLSKIETLRlAi~YI~~Lq~ 78 (97)
T 4aya_A 40 MNDCYSKLKELVPSIPQN-KKVSKMEILQHVIDYILDLQI 78 (97)
T ss_dssp HHHHHHHHHHHCTTSCSS-SCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCC-CcccHHHHHHHHHHHHHHHHH
Confidence 677999999999999854 899999999999999998864
No 12
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=95.45 E-value=0.011 Score=38.02 Aligned_cols=38 Identities=32% Similarity=0.448 Sum_probs=32.8
Q ss_pred chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHh
Q psy4528 8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALY 46 (87)
Q Consensus 8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy 46 (87)
|-=+|..|.++||-.++ .+++.|..||+.|.+++..|-
T Consensus 21 ln~~f~~Lr~~vP~~~~-~~K~sK~~iL~~A~~YI~~L~ 58 (88)
T 1nkp_A 21 LKRSFFALRDQIPELEN-NEKAPKVVILKKATAYILSVQ 58 (88)
T ss_dssp HHHHHHHHHTTCGGGTT-CTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCC-CCCCCHHHHHHHHHHHHHHHH
Confidence 44589999999997764 479999999999999999885
No 13
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=92.69 E-value=0.13 Score=33.93 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=34.8
Q ss_pred cchhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHh
Q psy4528 7 TIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALY 46 (87)
Q Consensus 7 tIdygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy 46 (87)
.|.+++.-|.++||.-.+.--++-|.-||+++-||+.-|-
T Consensus 6 nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq 45 (83)
T 4ath_A 6 NINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQ 45 (83)
T ss_dssp HHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHH
T ss_pred hHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHH
Confidence 4778899999999998665579999999999999998873
No 14
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=92.20 E-value=0.13 Score=34.57 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=31.7
Q ss_pred chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHh
Q psy4528 8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALY 46 (87)
Q Consensus 8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy 46 (87)
|.-+|..|..+||-..+...++.|..||+.|.++++.|-
T Consensus 42 In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq 80 (118)
T 4ati_A 42 INDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQ 80 (118)
T ss_dssp HHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHH
Confidence 667899999999987665568999999999999999884
No 15
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=92.08 E-value=0.12 Score=32.42 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=31.4
Q ss_pred chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHh
Q psy4528 8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALY 46 (87)
Q Consensus 8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy 46 (87)
|.-+|..|..+||- ...++.|..||+.|.++++.|-
T Consensus 21 in~~f~~L~~lvP~---~~~k~~Ka~IL~~Ai~YI~~Lq 56 (82)
T 1am9_A 21 INDKIIELKDLVVG---TEAKLNKSAVLRKAIDYIRFLQ 56 (82)
T ss_dssp HHHHHHHHHHHHTC---SSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC---CCCCCCHHHHHHHHHHHHHHHH
Confidence 56789999999985 3579999999999999999874
No 16
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=92.06 E-value=0.04 Score=32.86 Aligned_cols=40 Identities=28% Similarity=0.345 Sum_probs=34.8
Q ss_pred chhhhhhhhhccCCCCCCC--CCchHHHHHHhHHhHHHHHhC
Q psy4528 8 IDYGFQRLQKLIPRHPGDP--EKLPKEIILKRAADLAEALYS 47 (87)
Q Consensus 8 Idygfqrl~K~~pr~pGdp--ErlpKeiiLkRaadl~ealy~ 47 (87)
|.-+|..|..+||-..++. .++.|..||+.|.++++.|-.
T Consensus 20 in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~ 61 (65)
T 1an4_A 20 INNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQ 61 (65)
T ss_dssp HHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 5678999999999887763 478999999999999999865
No 17
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=88.33 E-value=0.25 Score=29.98 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=32.6
Q ss_pred cchhhhhhhhhccCCCCCC---CCCchHHHHHHhHHhHHHHHh
Q psy4528 7 TIDYGFQRLQKLIPRHPGD---PEKLPKEIILKRAADLAEALY 46 (87)
Q Consensus 7 tIdygfqrl~K~~pr~pGd---pErlpKeiiLkRaadl~ealy 46 (87)
.|--+|.-|+.+||--..+ ..++-|--||..|.+|+..|=
T Consensus 16 rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq 58 (63)
T 1a0a_A 16 RLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQ 58 (63)
T ss_dssp HHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHH
Confidence 3667999999999954322 468889999999999999884
No 18
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=87.99 E-value=0.59 Score=29.44 Aligned_cols=36 Identities=19% Similarity=0.442 Sum_probs=31.1
Q ss_pred chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHh
Q psy4528 8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALY 46 (87)
Q Consensus 8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy 46 (87)
|..+|.-|.++|| +-..++-|.-||+.|-++++.|-
T Consensus 23 IN~~i~eL~~LvP---~~~~K~dK~sIL~~aI~yik~Lq 58 (71)
T 4h10_B 23 FNVLIKELGSMLP---GNARKMDKSTVLQKSIDFLRKHK 58 (71)
T ss_dssp HHHHHHHHHTTSS---SCCSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC---CCCCCCcHHHHHHHHHHHHHHHH
Confidence 6678999999998 44569999999999999999874
No 19
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=83.28 E-value=0.42 Score=29.97 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=36.5
Q ss_pred cchhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHhCCCCC
Q psy4528 7 TIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRN 51 (87)
Q Consensus 7 tIdygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy~~p~n 51 (87)
.|..+|.-|..+||-..+-..++-|.-||+.|-++++.|-+.|..
T Consensus 23 rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~~~~ 67 (73)
T 4h10_A 23 KMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGAWLE 67 (73)
T ss_dssp HHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC---
T ss_pred HHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcCccc
Confidence 467889999999997544457999999999999999999887643
No 20
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}
Probab=54.34 E-value=6.3 Score=25.94 Aligned_cols=10 Identities=50% Similarity=1.022 Sum_probs=8.5
Q ss_pred ccCCCCCCCC
Q psy4528 18 LIPRHPGDPE 27 (87)
Q Consensus 18 ~~pr~pGdpE 27 (87)
+|||+.||+.
T Consensus 96 viPR~~~D~~ 105 (135)
T 3nrd_A 96 VIARREGDPN 105 (135)
T ss_dssp EEEECTTSTT
T ss_pred EecCCCCCCC
Confidence 5999999974
No 21
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}
Probab=45.19 E-value=14 Score=25.09 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=17.4
Q ss_pred ccCCCCCCCC------------CchHHHHHHhHHhHHHHH
Q psy4528 18 LIPRHPGDPE------------KLPKEIILKRAADLAEAL 45 (87)
Q Consensus 18 ~~pr~pGdpE------------rlpKeiiLkRaadl~eal 45 (87)
+|||+.||+. .+..+-+-+.|+.|.++|
T Consensus 99 vIPR~~~D~~~p~pvw~~~~~~~~~~eel~~~a~~Ir~~L 138 (149)
T 3i4s_A 99 IIARRTGDAAWPRPVWGVMQPLAHDATEVQNFISALRRKI 138 (149)
T ss_dssp EEEECTTSTTTTSCCTTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred EECCcCCCCCCCccccCCCcCCCCCHHHHHHHHHHHHHHH
Confidence 5999999974 123455555555555554
No 22
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=43.55 E-value=22 Score=25.93 Aligned_cols=37 Identities=19% Similarity=0.432 Sum_probs=31.8
Q ss_pred chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHhC
Q psy4528 8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYS 47 (87)
Q Consensus 8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy~ 47 (87)
|.-.|..|.+++| +...+|-|--||+-|-++++.+-.
T Consensus 27 ~n~~~~~l~~~~p---~~~~~~dk~~il~~~~~~~~~~~~ 63 (361)
T 4f3l_A 27 FNVLIKELGSMLP---GNARKMDKSTVLQKSIDFLRKHKE 63 (361)
T ss_dssp HHHHHHHHHHTCC---SSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC---CCCCCcCHHHHHHHHHHHHHHHHh
Confidence 4456889999999 556899999999999999998864
No 23
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=42.80 E-value=15 Score=24.74 Aligned_cols=28 Identities=18% Similarity=0.078 Sum_probs=19.7
Q ss_pred ccCCCCCCCC------------CchHHHHHHhHHhHHHHH
Q psy4528 18 LIPRHPGDPE------------KLPKEIILKRAADLAEAL 45 (87)
Q Consensus 18 ~~pr~pGdpE------------rlpKeiiLkRaadl~eal 45 (87)
+|||+.||+. .+..+-+-+.|+.|.++|
T Consensus 94 vIPR~~~D~~~~~~vw~~~~~~~~~~eel~~~a~kIr~~L 133 (149)
T 3i24_A 94 HIARFTTDVAWPGPVWGNTTGVIRAQSSQTQLVDLLRDKL 133 (149)
T ss_dssp EEEECTTSTTTTSCSTTCSCCCBCCHHHHHHHHHHHHHHH
T ss_pred EeCCccCCCCCCcceecCCCCCCCCHHHHHHHHHHHHHHH
Confidence 5999999953 233566677777777776
No 24
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Probab=32.71 E-value=26 Score=28.58 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=20.0
Q ss_pred CCCCCchHHHHHHhHHhHHHHHh
Q psy4528 24 GDPEKLPKEIILKRAADLAEALY 46 (87)
Q Consensus 24 GdpErlpKeiiLkRaadl~ealy 46 (87)
+||-++.|+++++|+++|++.--
T Consensus 138 eeNi~lt~evva~rtaeL~~~A~ 160 (450)
T 3txv_A 138 GEPTALPDATTAARAARLAAVAE 160 (450)
T ss_dssp SSCSBCCHHHHHHHHHHHHHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHH
Confidence 67889999999999999987653
No 25
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=30.93 E-value=31 Score=22.61 Aligned_cols=28 Identities=32% Similarity=0.294 Sum_probs=17.3
Q ss_pred ccCCCCCCCCC------------chHHHHHHhHHhHHHHH
Q psy4528 18 LIPRHPGDPEK------------LPKEIILKRAADLAEAL 45 (87)
Q Consensus 18 ~~pr~pGdpEr------------lpKeiiLkRaadl~eal 45 (87)
+|||+.||+.. +..+-+-+.++.+.++|
T Consensus 94 viPR~~~D~~~p~~vw~~~~~~~~~~eel~~~~~~ir~~L 133 (137)
T 3ohe_A 94 HIVRYQGDPAWPGPVWGKQPPVPYTEEQQASVKAKLQPLL 133 (137)
T ss_dssp EEEECTTSTTTTSCCTTSSCCCCCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCCCCCcccccCCCCCCCCHHHHHHHHHHHHHHH
Confidence 58999988642 22455555566665554
No 26
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=28.55 E-value=14 Score=27.49 Aligned_cols=42 Identities=21% Similarity=0.267 Sum_probs=35.6
Q ss_pred chhhhhhhhhccCCCCCCCCCchHHHHHHhHHhHHHHHhCCC
Q psy4528 8 IDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMP 49 (87)
Q Consensus 8 Idygfqrl~K~~pr~pGdpErlpKeiiLkRaadl~ealy~~p 49 (87)
|...|..|.++||-......+|-|--||+.|-++++.|-+..
T Consensus 28 ~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~~ 69 (387)
T 4f3l_B 28 MNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGAT 69 (387)
T ss_dssp HHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhccc
Confidence 456789999999987666789999999999999999997643
No 27
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=28.10 E-value=29 Score=22.13 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=16.2
Q ss_pred ccCCCCCCCC-------CchHHHHHHhHHhHHHHH
Q psy4528 18 LIPRHPGDPE-------KLPKEIILKRAADLAEAL 45 (87)
Q Consensus 18 ~~pr~pGdpE-------rlpKeiiLkRaadl~eal 45 (87)
+|||+.||.- +...+-+.+.++.|.++|
T Consensus 100 iiPr~~~d~~~~~~~~~~~~~~~l~~~~~~l~~~l 134 (138)
T 3p0t_A 100 VFPTRSLSDFGFANVDRNPSPESLDEAQAKIKAAL 134 (138)
T ss_dssp EEEESCGGGSSSTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred EeccccCCCCcccCCCCCCCHHHHHHHHHHHHHHH
Confidence 5899998643 333455555555555544
No 28
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0
Probab=26.79 E-value=43 Score=22.12 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=16.4
Q ss_pred ccCCCCCCC--------CCchHHHHHHhHHhHHHHH
Q psy4528 18 LIPRHPGDP--------EKLPKEIILKRAADLAEAL 45 (87)
Q Consensus 18 ~~pr~pGdp--------ErlpKeiiLkRaadl~eal 45 (87)
+|||+.||. .++..+-+-+-++.|.++|
T Consensus 111 iiPR~~~d~g~~~~w~~~~~~~~~l~~~~~~lr~~l 146 (149)
T 3ksv_A 111 IIPKTDEKTGLKIGWDTVKVASDELAEDAKRYSEAI 146 (149)
T ss_dssp EEEECCTTSSCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_pred EEecccCCCCcccCCCCCCCCHHHHHHHHHHHHHHH
Confidence 589998873 2344455555555555444
No 29
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae}
Probab=25.59 E-value=36 Score=22.84 Aligned_cols=12 Identities=33% Similarity=0.407 Sum_probs=9.0
Q ss_pred ccCCCCCCCCCc
Q psy4528 18 LIPRHPGDPEKL 29 (87)
Q Consensus 18 ~~pr~pGdpErl 29 (87)
+|||+.||+-.+
T Consensus 128 iiPR~~~d~~~~ 139 (161)
T 3lb5_A 128 IIPRMEGIELTP 139 (161)
T ss_dssp EEEECTTCCC--
T ss_pred EEcccCCCCCCc
Confidence 699999998654
No 30
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=23.82 E-value=30 Score=20.04 Aligned_cols=8 Identities=38% Similarity=1.041 Sum_probs=6.5
Q ss_pred ccCCCCCC
Q psy4528 18 LIPRHPGD 25 (87)
Q Consensus 18 ~~pr~pGd 25 (87)
.||+|+||
T Consensus 40 ~vP~h~~e 47 (70)
T 1whz_A 40 VVPFHSGE 47 (70)
T ss_dssp EEECSSSS
T ss_pred EecCCcCc
Confidence 59999984
Done!