RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4528
         (87 letters)



>d2fiqa1 c.1.10.7 (A:1-420) Putative tagatose 6-phosphate kinase 1
           GatZ {Escherichia coli [TaxId: 562]}
          Length = 420

 Score = 29.8 bits (67), Expect = 0.028
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 23  PGDPEKLPKEIILKRAADLAEA 44
            GDP  L  E + +RAA L  A
Sbjct: 130 AGDPIPLAPETVAERAAVLCFA 151


>d1jeya1 b.131.1.1 (A:254-534) Ku70 subunit middle domain {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 281

 Score = 26.4 bits (58), Expect = 0.43
 Identities = 7/31 (22%), Positives = 10/31 (32%)

Query: 15  LQKLIPRHPGDPEKLPKEIILKRAADLAEAL 45
           L  + P    D      E + KR   L +  
Sbjct: 242 LDLMEPEQAVDLTLPKVEAMNKRLGSLVDEF 272


>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12
           (Escherichia coli K-12) [TaxId: 83333]}
          Length = 467

 Score = 24.9 bits (53), Expect = 1.4
 Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 3/43 (6%)

Query: 3   LNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEAL 45
                +      LQ L+ ++  D EK+    +LK     A+ +
Sbjct: 428 FTPEFLQGYADELQMLVQQYADDKEKV---ALLKALWQYADEI 467


>d2fqla1 d.82.2.1 (A:61-172) C-terminal domain of frataxin
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 112

 Score = 23.3 bits (50), Expect = 3.8
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 45 LYSMPRNNQLPLPAPPRSPHHFNSYTGQ 72
          +   P N Q+ L +P   P+ F+   G+
Sbjct: 61 INKQPPNKQIWLASPLSGPNRFDLLNGE 88


>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506
           {Methylobacillus flagellatus [TaxId: 405]}
          Length = 139

 Score = 23.3 bits (49), Expect = 4.1
 Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 12/40 (30%)

Query: 18  LIPRHPGDP------------EKLPKEIILKRAADLAEAL 45
           +IPR   D             E LP+ +       L +A+
Sbjct: 95  VIPRFKRDRHFPNSVWGETKRESLPQALDQGSTTALKKAI 134


>d2gjxa2 d.92.2.1 (A:23-166) beta-hexosaminidase A {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 144

 Score = 22.9 bits (48), Expect = 5.7
 Identities = 4/25 (16%), Positives = 9/25 (36%)

Query: 10  YGFQRLQKLIPRHPGDPEKLPKEII 34
            G +   +L+ +       + K  I
Sbjct: 115 RGLETFSQLVWKSAEGTFFINKTEI 139


>d1ekga_ d.82.2.1 (A:) C-terminal domain of frataxin {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 119

 Score = 22.9 bits (49), Expect = 6.2
 Identities = 5/24 (20%), Positives = 9/24 (37%)

Query: 49 PRNNQLPLPAPPRSPHHFNSYTGQ 72
            N Q+ L +P   P  ++     
Sbjct: 60 TPNKQIWLSSPSSGPKRYDWTGKN 83


>d1dgfa_ e.5.1.1 (A:) Catalase I {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 497

 Score = 22.9 bits (49), Expect = 7.7
 Identities = 6/34 (17%), Positives = 12/34 (35%)

Query: 49  PRNNQLPLPAPPRSPHHFNSYTGQLNVTVQENGN 82
           P    +P+  P R+        G + +   + G 
Sbjct: 364 PNYLHIPVNCPYRARVANYQRDGPMCMQDNQGGA 397


>d1nowa2 d.92.2.1 (A:55-199) beta-hexosaminidase B, N-terminal
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 145

 Score = 22.5 bits (47), Expect = 8.4
 Identities = 3/25 (12%), Positives = 9/25 (36%)

Query: 10  YGFQRLQKLIPRHPGDPEKLPKEII 34
            G +   +L+ +       + +  I
Sbjct: 116 RGLETFSQLVYQDSYGTFTINESTI 140


>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 350

 Score = 22.8 bits (48), Expect = 9.6
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 11  GFQRLQKLIPRHPGDPEKLPK 31
           G  +L+ +I ++  D E+LP 
Sbjct: 300 GLGKLKMIIAKNGPDTERLPT 320


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0557    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 359,305
Number of extensions: 15152
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 15
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.3 bits)