BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4529
         (123 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MLP|A Chain A, Early B-Cell Factor 1 (Ebf1) Bound To Dna
 pdb|3MLP|B Chain B, Early B-Cell Factor 1 (Ebf1) Bound To Dna
 pdb|3MLP|E Chain E, Early B-Cell Factor 1 (Ebf1) Bound To Dna
 pdb|3MLP|F Chain F, Early B-Cell Factor 1 (Ebf1) Bound To Dna
          Length = 402

 Score =  134 bits (336), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/65 (90%), Positives = 62/65 (95%)

Query: 54  LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
           LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKG PGRF+Y +LNEPTIDYGFQRLQK+I
Sbjct: 274 LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTPGRFIYTALNEPTIDYGFQRLQKVI 333

Query: 114 PRHPG 118
           PRHPG
Sbjct: 334 PRHPG 338


>pdb|3N50|A Chain A, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
           DOMAINS
 pdb|3N50|B Chain B, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
           DOMAINS
 pdb|3N50|C Chain C, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
           DOMAINS
 pdb|3N50|D Chain D, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
           DOMAINS
 pdb|3N50|E Chain E, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
           DOMAINS
 pdb|3N50|F Chain F, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
           DOMAINS
          Length = 159

 Score =  132 bits (333), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 61/65 (93%), Positives = 63/65 (96%)

Query: 54  LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
           LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVY +LNEPTIDYGFQRLQK+I
Sbjct: 49  LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNEPTIDYGFQRLQKVI 108

Query: 114 PRHPG 118
           PRHPG
Sbjct: 109 PRHPG 113


>pdb|3MUJ|A Chain A, Early B-Cell Factor 3 (Ebf3) IptTIG AND DIMERIZATION
           HELICES
 pdb|3MUJ|B Chain B, Early B-Cell Factor 3 (Ebf3) IptTIG AND DIMERIZATION
           HELICES
          Length = 138

 Score =  132 bits (331), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 61/65 (93%), Positives = 63/65 (96%)

Query: 54  LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
           LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVY +LNEPTIDYGFQRLQK+I
Sbjct: 48  LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNEPTIDYGFQRLQKVI 107

Query: 114 PRHPG 118
           PRHPG
Sbjct: 108 PRHPG 112


>pdb|3MQI|A Chain A, Human Early B-Cell Factor 1 (Ebf1) IptTIG DOMAIN
 pdb|3MQI|B Chain B, Human Early B-Cell Factor 1 (Ebf1) IptTIG DOMAIN
 pdb|3MQI|C Chain C, Human Early B-Cell Factor 1 (Ebf1) IptTIG DOMAIN
          Length = 96

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/48 (89%), Positives = 45/48 (93%)

Query: 54  LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPT 101
           LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKG PGRF+Y +LNEPT
Sbjct: 49  LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTPGRFIYTALNEPT 96


>pdb|2D2A|A Chain A, Crystal Structure Of Escherichia Coli Sufa Involved In
           Biosynthesis Of Iron-Sulfur Clusters
 pdb|2D2A|B Chain B, Crystal Structure Of Escherichia Coli Sufa Involved In
           Biosynthesis Of Iron-Sulfur Clusters
          Length = 145

 Score = 28.1 bits (61), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 16/86 (18%)

Query: 42  INANTSGWNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYV--SLNE 99
            N     W   TL  + AI ++      PG+V V L  K    C G    F YV  S++E
Sbjct: 31  FNPQDFAWQGLTLTPAAAIHIRELVAKQPGMVGVRLGVKQTG-CAG----FGYVLDSVSE 85

Query: 100 PTIDYGFQRLQKLIPRHPG--LYVPL 123
           P  D        L+  H G  L+VPL
Sbjct: 86  PDKD-------DLLFEHDGAKLFVPL 104


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,126,107
Number of Sequences: 62578
Number of extensions: 152958
Number of successful extensions: 431
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 426
Number of HSP's gapped (non-prelim): 9
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)