BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4529
(123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O93375|COE2_DANRE Transcription factor COE2 OS=Danio rerio GN=coe2 PE=2 SV=1
Length = 579
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/65 (93%), Positives = 63/65 (96%)
Query: 54 LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRF+Y +LNEPTIDYGFQRLQKLI
Sbjct: 302 LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFIYTALNEPTIDYGFQRLQKLI 361
Query: 114 PRHPG 118
PRHPG
Sbjct: 362 PRHPG 366
>sp|O73742|COE3_XENLA Transcription factor COE3 OS=Xenopus laevis GN=coe3 PE=2 SV=2
Length = 598
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/65 (93%), Positives = 63/65 (96%)
Query: 54 LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVY +LNEPTIDYGFQRLQK+I
Sbjct: 306 LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNEPTIDYGFQRLQKVI 365
Query: 114 PRHPG 118
PRHPG
Sbjct: 366 PRHPG 370
>sp|O08791|COE3_MOUSE Transcription factor COE3 OS=Mus musculus GN=Ebf3 PE=2 SV=1
Length = 596
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/65 (93%), Positives = 63/65 (96%)
Query: 54 LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVY +LNEPTIDYGFQRLQK+I
Sbjct: 305 LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNEPTIDYGFQRLQKVI 364
Query: 114 PRHPG 118
PRHPG
Sbjct: 365 PRHPG 369
>sp|Q9H4W6|COE3_HUMAN Transcription factor COE3 OS=Homo sapiens GN=EBF3 PE=1 SV=2
Length = 596
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/65 (93%), Positives = 63/65 (96%)
Query: 54 LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVY +LNEPTIDYGFQRLQK+I
Sbjct: 305 LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNEPTIDYGFQRLQKVI 364
Query: 114 PRHPG 118
PRHPG
Sbjct: 365 PRHPG 369
>sp|P56721|COLL_DROME Transcription factor collier OS=Drosophila melanogaster GN=kn PE=2
SV=2
Length = 575
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/66 (96%), Positives = 65/66 (98%), Gaps = 1/66 (1%)
Query: 54 LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVS-LNEPTIDYGFQRLQKL 112
LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKG+PGRFVYVS LNEPTIDYGFQRLQKL
Sbjct: 341 LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGSPGRFVYVSALNEPTIDYGFQRLQKL 400
Query: 113 IPRHPG 118
IPRHPG
Sbjct: 401 IPRHPG 406
>sp|Q8K4J2|COE4_MOUSE Transcription factor COE4 OS=Mus musculus GN=Ebf4 PE=2 SV=1
Length = 599
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/79 (79%), Positives = 67/79 (84%), Gaps = 2/79 (2%)
Query: 40 HFINANTSGWNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNE 99
+ N W+ LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVY +LNE
Sbjct: 286 QVVFGNVLLWSE--LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNE 343
Query: 100 PTIDYGFQRLQKLIPRHPG 118
PTIDYGFQRLQK+IPRHPG
Sbjct: 344 PTIDYGFQRLQKVIPRHPG 362
>sp|O08792|COE2_MOUSE Transcription factor COE2 OS=Mus musculus GN=Ebf2 PE=1 SV=4
Length = 575
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 60/65 (92%), Positives = 63/65 (96%)
Query: 54 LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRF+Y +LNEPTIDYGFQRLQK+I
Sbjct: 295 LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFIYTALNEPTIDYGFQRLQKVI 354
Query: 114 PRHPG 118
PRHPG
Sbjct: 355 PRHPG 359
>sp|Q6P4K7|COE2_XENTR Transcription factor coe2 OS=Xenopus tropicalis GN=ebf2 PE=2 SV=1
Length = 575
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 60/65 (92%), Positives = 63/65 (96%)
Query: 54 LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRF+Y +LNEPTIDYGFQRLQK+I
Sbjct: 296 LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFIYTALNEPTIDYGFQRLQKVI 355
Query: 114 PRHPG 118
PRHPG
Sbjct: 356 PRHPG 360
>sp|Q08DL5|COE2_BOVIN Transcription factor COE2 OS=Bos taurus GN=EBF2 PE=2 SV=1
Length = 575
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 60/65 (92%), Positives = 63/65 (96%)
Query: 54 LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRF+Y +LNEPTIDYGFQRLQK+I
Sbjct: 295 LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFIYTALNEPTIDYGFQRLQKVI 354
Query: 114 PRHPG 118
PRHPG
Sbjct: 355 PRHPG 359
>sp|Q9HAK2|COE2_HUMAN Transcription factor COE2 OS=Homo sapiens GN=EBF2 PE=1 SV=4
Length = 575
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 60/65 (92%), Positives = 63/65 (96%)
Query: 54 LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRF+Y +LNEPTIDYGFQRLQK+I
Sbjct: 295 LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFIYTALNEPTIDYGFQRLQKVI 354
Query: 114 PRHPG 118
PRHPG
Sbjct: 355 PRHPG 359
>sp|B7ZRI2|COE2B_XENLA Transcription factor coe2-B OS=Xenopus laevis GN=ebf2-b PE=2 SV=1
Length = 580
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 60/65 (92%), Positives = 63/65 (96%)
Query: 54 LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRF+Y +LNEPTIDYGFQRLQK+I
Sbjct: 301 LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFIYTALNEPTIDYGFQRLQKVI 360
Query: 114 PRHPG 118
PRHPG
Sbjct: 361 PRHPG 365
>sp|B7ZRJ4|COE2A_XENLA Transcription factor coe2-A OS=Xenopus laevis GN=ebf2-a PE=2 SV=1
Length = 575
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 59/65 (90%), Positives = 63/65 (96%)
Query: 54 LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRF+Y +LNEPTIDYGFQRLQK++
Sbjct: 296 LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFIYTALNEPTIDYGFQRLQKVV 355
Query: 114 PRHPG 118
PRHPG
Sbjct: 356 PRHPG 360
>sp|Q63398|COE1_RAT Transcription factor COE1 OS=Rattus norvegicus GN=Ebf1 PE=1 SV=2
Length = 584
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 59/65 (90%), Positives = 62/65 (95%)
Query: 54 LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKG PGRF+Y +LNEPTIDYGFQRLQK+I
Sbjct: 297 LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTPGRFIYTALNEPTIDYGFQRLQKVI 356
Query: 114 PRHPG 118
PRHPG
Sbjct: 357 PRHPG 361
>sp|Q07802|COE1_MOUSE Transcription factor COE1 OS=Mus musculus GN=Ebf1 PE=1 SV=1
Length = 591
Score = 132 bits (332), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 59/65 (90%), Positives = 62/65 (95%)
Query: 54 LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKG PGRF+Y +LNEPTIDYGFQRLQK+I
Sbjct: 304 LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTPGRFIYTALNEPTIDYGFQRLQKVI 363
Query: 114 PRHPG 118
PRHPG
Sbjct: 364 PRHPG 368
>sp|Q9UH73|COE1_HUMAN Transcription factor COE1 OS=Homo sapiens GN=EBF1 PE=1 SV=2
Length = 591
Score = 132 bits (332), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 59/65 (90%), Positives = 62/65 (95%)
Query: 54 LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKG PGRF+Y +LNEPTIDYGFQRLQK+I
Sbjct: 304 LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTPGRFIYTALNEPTIDYGFQRLQKVI 363
Query: 114 PRHPG 118
PRHPG
Sbjct: 364 PRHPG 368
>sp|Q9BQW3|COE4_HUMAN Transcription factor COE4 OS=Homo sapiens GN=EBF4 PE=2 SV=2
Length = 602
Score = 132 bits (331), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 62/79 (78%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 40 HFINANTSGWNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNE 99
+ N W+ LIT HAIRVQTPPRHIPGVVEVTLSYKSKQFCKG PGRFVY +LNE
Sbjct: 286 QVVFGNVLVWSE--LITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGCPGRFVYTALNE 343
Query: 100 PTIDYGFQRLQKLIPRHPG 118
PTIDYGFQRLQK+IPRHPG
Sbjct: 344 PTIDYGFQRLQKVIPRHPG 362
>sp|Q93705|UNC3_CAEEL Transcription factor unc-3 OS=Caenorhabditis elegans GN=unc-3 PE=2
SV=3
Length = 491
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 52/65 (80%)
Query: 54 LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113
LI+ HAIRV TPP+H G V+VTL YKSK + +G P RF Y++L EP I+YGFQRLQKL+
Sbjct: 315 LISPHAIRVTTPPKHSAGPVDVTLQYKSKTYSRGTPLRFSYITLAEPGIEYGFQRLQKLL 374
Query: 114 PRHPG 118
P++PG
Sbjct: 375 PKYPG 379
>sp|P14634|EFTU_ASTLO Elongation factor Tu, plastid OS=Astasia longa GN=tufA PE=3 SV=1
Length = 409
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 3 TGSSYSYDHHTLSSDPDEKSAFIPVTRASSPTSTPNSHFINANTSG 48
TG++ S + + S P+EK+ I + A T N H+ + + G
Sbjct: 39 TGNTKSKKYEEIDSSPEEKARGITINTAHVEYETKNRHYAHVDCPG 84
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,178,973
Number of Sequences: 539616
Number of extensions: 1887952
Number of successful extensions: 4647
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4595
Number of HSP's gapped (non-prelim): 60
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)