Query psy4529
Match_columns 123
No_of_seqs 29 out of 31
Neff 2.2
Searched_HMMs 46136
Date Fri Aug 16 19:29:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4529.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4529hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01175 IPT_COE IPT domain of 100.0 1.6E-31 3.4E-36 189.9 5.9 71 26-96 1-85 (85)
2 KOG3836|consensus 99.5 6E-15 1.3E-19 131.8 5.0 97 25-122 322-444 (605)
3 KOG3836|consensus 99.5 7.6E-15 1.6E-19 131.1 2.5 99 24-122 67-188 (605)
4 cd00603 IPT_PCSR IPT domain of 97.6 0.00028 6.1E-09 45.9 6.5 70 26-95 1-89 (90)
5 PF01833 TIG: IPT/TIG domain; 97.4 0.00023 5E-09 44.3 3.7 67 26-94 1-85 (85)
6 cd00102 IPT Immunoglobulin-lik 97.4 0.00097 2.1E-08 42.2 6.6 69 26-95 1-88 (89)
7 cd01179 IPT_plexin_repeat2 Sec 97.3 0.0012 2.6E-08 43.8 6.6 68 26-95 1-84 (85)
8 smart00429 IPT ig-like, plexin 96.7 0.0077 1.7E-07 39.0 6.0 69 26-95 2-90 (90)
9 cd01180 IPT_plexin_repeat1 Fir 96.6 0.012 2.5E-07 40.1 6.6 70 26-95 1-93 (94)
10 cd01181 IPT_plexin_repeat3 Thi 91.5 0.82 1.8E-05 31.8 5.9 57 26-82 1-82 (99)
11 KOG0520|consensus 90.7 0.45 9.7E-06 46.0 5.2 73 28-102 407-497 (975)
12 PLN02397 aspartate transaminas 61.6 4.3 9.4E-05 33.5 1.2 25 89-113 395-419 (423)
13 cd00604 IPT_CGTD IPT domain (d 56.6 47 0.001 22.5 5.5 66 26-94 1-79 (81)
14 KOG4029|consensus 45.9 12 0.00026 29.1 1.4 19 100-118 122-140 (228)
15 cd02849 CGTase_C_term Cgtase ( 43.9 62 0.0013 21.9 4.5 51 25-80 2-69 (81)
16 PRK09257 aromatic amino acid a 43.9 13 0.00028 29.8 1.3 24 90-113 373-396 (396)
17 COG5122 TRS23 Transport protei 33.7 75 0.0016 24.8 4.0 59 51-113 37-99 (134)
18 PF14871 GHL6: Hypothetical gl 32.3 29 0.00063 25.5 1.5 28 92-119 99-126 (132)
19 PF14603 hSH3: Helically-exten 31.7 27 0.00059 25.5 1.3 18 80-97 49-66 (89)
20 PRK07403 glyceraldehyde-3-phos 30.2 44 0.00095 28.6 2.4 67 6-81 182-252 (337)
21 cd01177 IPT_NFkappaB IPT domai 28.6 1.8E+02 0.0039 21.5 5.1 62 33-95 12-101 (102)
22 KOG3610|consensus 25.8 1.2E+02 0.0026 30.1 4.8 71 25-96 142-230 (1025)
23 cd01178 IPT_NFAT IPT domain of 25.0 2.8E+02 0.0061 20.3 5.6 69 26-95 2-100 (101)
24 COG5626 Uncharacterized small 24.9 25 0.00055 26.2 0.1 15 46-61 12-26 (97)
25 PF08022 FAD_binding_8: FAD-bi 24.8 24 0.00053 24.0 0.0 27 70-97 14-40 (105)
26 PF03676 UPF0183: Uncharacteri 23.0 65 0.0014 28.1 2.2 37 73-122 73-110 (394)
27 PF12539 Csm1: Chromosome segr 22.8 1.1E+02 0.0024 21.9 3.1 29 88-116 51-79 (90)
28 PRK00054 dihydroorotate dehydr 22.7 82 0.0018 24.0 2.5 42 55-98 2-43 (250)
29 KOG0561|consensus 21.1 43 0.00094 29.8 0.8 20 100-119 73-92 (373)
30 KOG0256|consensus 20.6 42 0.00091 30.8 0.6 42 72-114 417-460 (471)
31 COG3908 Uncharacterized protei 20.5 1.4E+02 0.003 21.5 3.1 34 69-102 7-40 (77)
32 TIGR01573 cas2 CRISPR-associat 20.5 31 0.00068 23.6 -0.1 11 102-112 26-36 (95)
No 1
>cd01175 IPT_COE IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved in the regulation of the early stages of B-cell differentiation, Drosophila collier is a regulator of the head patterning, and a related protein in Xenopus is involved in primary neurogenesis. All COE family members have a well conserved DNA binding domain that contains an atypical Zn finger motif. The function of the IPT domain is unknown.
Probab=99.97 E-value=1.6e-31 Score=189.90 Aligned_cols=71 Identities=62% Similarity=0.941 Sum_probs=68.5
Q ss_pred ceeeecCCCC----CCCeEEEec----------cCCccccccccccccccccCCCCCCCcceEEEEEeeccccccCCCce
Q psy4529 26 PVTRASSPTS----TPNSHFINA----------NTSGWNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGR 91 (123)
Q Consensus 26 pci~aisp~e----~g~s~iiig----------~~t~~vwsELItpHAiRVqTPPrh~PGvVeVTLsyKsKqfckg~Pgr 91 (123)
|||+||.|+| ||.+++|+| |+++.+|+|+|+||+|||+|||+|+||+|+|||+||+||||||+|||
T Consensus 1 P~I~ai~P~eG~~tGGt~VtI~GenF~~gl~V~FG~~~~w~e~isp~~i~~~tPP~~~pG~V~Vtl~~~~~~~~~~~p~~ 80 (85)
T cd01175 1 PCIKAISPSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTPGR 80 (85)
T ss_pred CcccEecCCCCcccCCeEEEEECCCCCCCcEEEECCEeEEEEEeccceEEEecCCCCCCceEEEEEEECceeeccCCCce
Confidence 8999999999 778888999 99999999999999999999999999999999999999999999999
Q ss_pred eEEee
Q psy4529 92 FVYVS 96 (123)
Q Consensus 92 F~Yt~ 96 (123)
|+|++
T Consensus 81 f~y~~ 85 (85)
T cd01175 81 FVYTA 85 (85)
T ss_pred EEecC
Confidence 99985
No 2
>KOG3836|consensus
Probab=99.53 E-value=6e-15 Score=131.76 Aligned_cols=97 Identities=16% Similarity=0.130 Sum_probs=89.2
Q ss_pred cceeeecCCCC----CCCeEEEec----------cC--------C---ccccccccccccccccCCCCCCCcceEEEEEe
Q psy4529 25 IPVTRASSPTS----TPNSHFINA----------NT--------S---GWNHCTLITSHAIRVQTPPRHIPGVVEVTLSY 79 (123)
Q Consensus 25 ~pci~aisp~e----~g~s~iiig----------~~--------t---~~vwsELItpHAiRVqTPPrh~PGvVeVTLsy 79 (123)
+|||+++.|++ ++-.+.|+| |. + +..|+|.+++|||++|+|+++.. +|++||++
T Consensus 322 ~~~i~~yvp~t~~q~~~~al~ivg~n~~~~l~~a~~~~~~s~~~~~~~~~~n~~~~s~~aI~~~~~~~~~s-~~~lSl~~ 400 (605)
T KOG3836|consen 322 TKAIFTYVPSTDRQLIEYALQIVGLNMNGKLEDARNIANSSLSPTSPMMNNNSEQLSPYAIMSQKPTNNLS-TVNLSLCD 400 (605)
T ss_pred cccceeeecCCCceeeeeEEEEecccccCchhhhcCCccccCCCCCcceeccccccCccceeeecCCCCCC-ccceeeeh
Confidence 59999999999 666777888 33 3 56899999999999999999999 99999999
Q ss_pred eccccccCCCceeEEe-ecCCCcchhhhhhhhhhcCCCCCCCCC
Q psy4529 80 KSKQFCKGAPGRFVYV-SLNEPTIDYGFQRLQKLIPRHPGLYVP 122 (123)
Q Consensus 80 KsKqfckg~PgrF~Yt-~l~EPtIdygFqRLqKliPRhPGDPE~ 122 (123)
+.++||.+.+++|.|+ .+++|.||++||++++.+|++||||+-
T Consensus 401 ~~~~~~~~ss~v~~lik~~~~~~~~d~f~~~p~~~~~~sgdp~~ 444 (605)
T KOG3836|consen 401 VRAALNNSSSLVFTLIKKGAHPNDDDKFGFTPLHIPQISGDPRI 444 (605)
T ss_pred hhhhhcCCccceeeeecccCccchhcccccccccccCCCCCHHH
Confidence 9999999999999999 589999999999999999999999973
No 3
>KOG3836|consensus
Probab=99.49 E-value=7.6e-15 Score=131.13 Aligned_cols=99 Identities=25% Similarity=0.164 Sum_probs=90.1
Q ss_pred ccceeeecCCCC----CCCeEEEec----------cCCccccccccccccccccCCCCCCCcceEEEEEeeccccccCCC
Q psy4529 24 FIPVTRASSPTS----TPNSHFINA----------NTSGWNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAP 89 (123)
Q Consensus 24 ~~pci~aisp~e----~g~s~iiig----------~~t~~vwsELItpHAiRVqTPPrh~PGvVeVTLsyKsKqfckg~P 89 (123)
-+||.+...|.. .+...+|++ |..+.+|.+.+|||++|++|++++.+|+||+++.++++|+|.|.|
T Consensus 67 ~v~~~~~~~~~~ahfek~~p~~l~~~nffH~~~~~F~~m~ly~rn~tp~S~~v~te~~~~~~~vE~d~e~~s~~~~~G~~ 146 (605)
T KOG3836|consen 67 IVFNSKQLFPIRAHFEKDLPTRLVCYNFFHKAQNGFVVMALYKRNITPTSIRVETERTQFPGFVEDDLEQKSPQSNNGFP 146 (605)
T ss_pred cccccccccchhhhcccCCCccccccceecccccceEEEEeecccCCccccceeccccccCceeecchhhcCchhccCCC
Confidence 367888888876 555555554 778999999999999999999999999999999999999999999
Q ss_pred ceeEEee---------cCCCcchhhhhhhhhhcCCCCCCCCC
Q psy4529 90 GRFVYVS---------LNEPTIDYGFQRLQKLIPRHPGLYVP 122 (123)
Q Consensus 90 grF~Yt~---------l~EPtIdygFqRLqKliPRhPGDPE~ 122 (123)
+||.|.. ++++.|||+++|.|+.+++++++||-
T Consensus 147 y~~~ll~~n~~~~~~~l~~rlID~~~~~~~it~~~q~knpel 188 (605)
T KOG3836|consen 147 YRFQLLPENGVRVEIPLNVRLIDSGVTKQQITYLGQDKNPEL 188 (605)
T ss_pred ceeeecCCCCceeeeeccccccccccccccccccccCCChhh
Confidence 9999999 99999999999999999999999983
No 4
>cd00603 IPT_PCSR IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=97.62 E-value=0.00028 Score=45.87 Aligned_cols=70 Identities=26% Similarity=0.337 Sum_probs=50.0
Q ss_pred ceeeecCCCC---CCCeEE-Eec--cCCcc----c-------cccccccccccccCCCCCCCcceEEEEEeecccc--cc
Q psy4529 26 PVTRASSPTS---TPNSHF-INA--NTSGW----N-------HCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQF--CK 86 (123)
Q Consensus 26 pci~aisp~e---~g~s~i-iig--~~t~~----v-------wsELItpHAiRVqTPPrh~PGvVeVTLsyKsKqf--ck 86 (123)
|.|.+|+|++ .|++.| |.| |.... | .-..++...|.+++|+...+|-..|++.++++.+ +.
T Consensus 1 P~I~~i~P~~g~~~Ggt~vtI~G~~f~~~~~~~~V~ig~~~C~~~~~~~~~i~C~~p~~~~~~~~~v~v~v~~~~~~~~~ 80 (90)
T cd00603 1 PVITSISPSSGPLSGGTRLTITGSNLGSGSPRVRVTVGGVPCKVLNVSSTEIVCRTPAAATPGEGPVEVTVDGANVSARV 80 (90)
T ss_pred CeEEEEcCCCCCCCCCeEEEEEEECCCCCCceEEEEECCEECcEEecCCCEEEEECCCCCCCCcEeEEEEECCccccccc
Confidence 7899999998 566666 777 43331 1 1112368899999999988855666666666653 77
Q ss_pred CCCceeEEe
Q psy4529 87 GAPGRFVYV 95 (123)
Q Consensus 87 g~PgrF~Yt 95 (123)
.++.+|.|.
T Consensus 81 ~~~~~F~Y~ 89 (90)
T cd00603 81 LSNTTFTYV 89 (90)
T ss_pred cCCcceEEe
Confidence 888899986
No 5
>PF01833 TIG: IPT/TIG domain; InterPro: IPR002909 This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. The Ron tyrosine kinase receptor shares with the members of its subfamily (Met and Sea) a unique functional feature: the control of cell dissociation, motility, and invasion of extracellular matrices (scattering) [].; GO: 0005515 protein binding; PDB: 3HRP_A 1UAD_D 3MLP_E 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A 7CGT_A 1CGU_A ....
Probab=97.41 E-value=0.00023 Score=44.29 Aligned_cols=67 Identities=22% Similarity=0.336 Sum_probs=49.1
Q ss_pred ceeeecCCCC---CCCeEE-Eec--c-----------CCcccccc-ccccccccccCCCCCCCcceEEEEEeeccccccC
Q psy4529 26 PVTRASSPTS---TPNSHF-INA--N-----------TSGWNHCT-LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKG 87 (123)
Q Consensus 26 pci~aisp~e---~g~s~i-iig--~-----------~t~~vwsE-LItpHAiRVqTPPrh~PGvVeVTLsyKsKqfckg 87 (123)
|.|.+++|+. .|++.| |.| | +....... .++...|+++.|+.. +|.+.|.+...+ +.+..
T Consensus 1 P~I~si~P~~~~~~gg~~ItI~G~~f~~~~~~~~v~i~~~~~~~~~~~~~~~i~c~~p~~~-~~~~~v~v~~~~-~~~~~ 78 (85)
T PF01833_consen 1 PVITSISPNSGSISGGTNITITGSNFGSNSSNISVKIGGSQCTVITVVSSTQITCTSPALP-SGNVNVSVTVNG-QQIYS 78 (85)
T ss_dssp SEEEEEESSEEETTCTSEEEEEEESSESSSTTEEEEETTEEEEEEGEEETTEEEEE--SCS-SEEEEEEEEETT-SEEEE
T ss_pred CEEEEEECCeEecCCCEEEEEEEEeecccCCceEEEECCEeeeEEEEECCcEEEEEECCCC-CccEEEEEEECC-cCeEE
Confidence 8899999987 445666 888 3 22233334 788899999997766 889999999988 66667
Q ss_pred CCceeEE
Q psy4529 88 APGRFVY 94 (123)
Q Consensus 88 ~PgrF~Y 94 (123)
++..|.|
T Consensus 79 ~~~~F~Y 85 (85)
T PF01833_consen 79 NNTSFTY 85 (85)
T ss_dssp EEEEEEE
T ss_pred CCeeeEC
Confidence 7778887
No 6
>cd00102 IPT Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor receptors), as well as, cyclodextrin glycosyltransferase and similar enzymes. Although they are involved in DNA binding in transcription factors, their function in other proteins is unknown. In these transcription factors, IPTs form homo- or heterodimers with the exception of the nuclear factor of activated Tcells (NFAT) transcription factors which are mainly monomers.
Probab=97.40 E-value=0.00097 Score=42.23 Aligned_cols=69 Identities=35% Similarity=0.430 Sum_probs=45.5
Q ss_pred ceeeecCCCC---CCCeEE-Eec--cCCc-----------cccccccccccccccCCCCCCC--cceEEEEEeecccccc
Q psy4529 26 PVTRASSPTS---TPNSHF-INA--NTSG-----------WNHCTLITSHAIRVQTPPRHIP--GVVEVTLSYKSKQFCK 86 (123)
Q Consensus 26 pci~aisp~e---~g~s~i-iig--~~t~-----------~vwsELItpHAiRVqTPPrh~P--GvVeVTLsyKsKqfck 86 (123)
|.|.+|+|+. .|++.| |.| |... ......++.+.|.+.+|+.... |.++|++..... .+.
T Consensus 1 P~I~~i~P~~g~~~GGt~itI~G~~f~~~~~~~v~~~g~~~c~~~~~~~~~i~C~~p~~~~~~~~~v~v~v~~~~~-~~~ 79 (89)
T cd00102 1 PVITSISPSSGPVSGGTEVTITGSNFGSGSNLRVTFGGGVPCSVLSVSSTAIVCTTPPYANPGPGPVEVTVDRGNG-GIT 79 (89)
T ss_pred CEEeEEECCcCCCCCCeEEEEEEECCCCCCcEEEEEeCCCeEEEEEecCCEEEEECCCCCCCCcEEEEEEEeCCCC-ccc
Confidence 6788999988 456666 777 3222 1111234688999999998887 555555543322 556
Q ss_pred CCCceeEEe
Q psy4529 87 GAPGRFVYV 95 (123)
Q Consensus 87 g~PgrF~Yt 95 (123)
.++..|.|+
T Consensus 80 ~~~~~F~Y~ 88 (89)
T cd00102 80 SSPLTFTYV 88 (89)
T ss_pred CCCccEEee
Confidence 777789886
No 7
>cd01179 IPT_plexin_repeat2 Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=97.32 E-value=0.0012 Score=43.79 Aligned_cols=68 Identities=25% Similarity=0.357 Sum_probs=49.0
Q ss_pred ceeeecCCCC---CCCeEE-Eec--cCCc---ccc--c-c----ccccccccccCCCCCCCcceEEEEEeeccccccCCC
Q psy4529 26 PVTRASSPTS---TPNSHF-INA--NTSG---WNH--C-T----LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAP 89 (123)
Q Consensus 26 pci~aisp~e---~g~s~i-iig--~~t~---~vw--s-E----LItpHAiRVqTPPrh~PGvVeVTLsyKsKqfckg~P 89 (123)
|.|.+|+|++ .|++.| |.| |.+. -|| . + -.+..-|.+.||+....|.++|++.+.+.++- ++
T Consensus 1 P~I~~i~P~~Gp~~GGT~vtI~G~~~~~~~~~~V~ig~~~C~~~~~~~~~i~C~tp~~~~~~~~~v~V~~d~~~~~--~~ 78 (85)
T cd01179 1 PSITSLSPSYGPQSGGTRLTITGKHLNAGSSVRVTVGGQPCKILSVSSSQIVCLTPPSASPGEAPVKVLIDGARRL--AP 78 (85)
T ss_pred CeeeEEcCCCCCCCCCEEEEEEEECCCCCCeEEEEECCeEeeEEEecCCEEEEECCCCCCCceEEEEEEECCcccC--CC
Confidence 7899999999 577777 888 4332 111 1 1 12455799999999889999999999887443 46
Q ss_pred ceeEEe
Q psy4529 90 GRFVYV 95 (123)
Q Consensus 90 grF~Yt 95 (123)
..|.|+
T Consensus 79 ~~F~Y~ 84 (85)
T cd01179 79 LVFTYT 84 (85)
T ss_pred ccEEEe
Confidence 889986
No 8
>smart00429 IPT ig-like, plexins, transcription factors.
Probab=96.69 E-value=0.0077 Score=38.96 Aligned_cols=69 Identities=35% Similarity=0.495 Sum_probs=46.5
Q ss_pred ceeeecCCCC---CCCeEE-Eec--cCCcc-------ccc---ccc--ccccccccCCCCC-CCcceEE-EEEeeccccc
Q psy4529 26 PVTRASSPTS---TPNSHF-INA--NTSGW-------NHC---TLI--TSHAIRVQTPPRH-IPGVVEV-TLSYKSKQFC 85 (123)
Q Consensus 26 pci~aisp~e---~g~s~i-iig--~~t~~-------vws---ELI--tpHAiRVqTPPrh-~PGvVeV-TLsyKsKqfc 85 (123)
|.|.+++|+. .|++.| |.| |.+.. .|. .++ +...|.+.+|+.+ .++-+.| ++.+....+
T Consensus 2 P~I~~i~P~~g~~~GGt~iti~G~nf~~~~~~~~~~~~~~~~c~~~~~~~~~i~C~tp~~~~~~~~~~v~~v~~~~~~~- 80 (90)
T smart00429 2 PVITRISPTSGPVSGGTEITLCGKNLDSISVVFVEVGVGEAPCTFLPSSSTAIVCKTPPYHTIPGSVPVREVGLRNGGV- 80 (90)
T ss_pred CEEEEEccCcCcCCCCeEEEEeeecCCcceEEEEEEEeCCEEeEEeCCcceEEEEECCCCCCCCCCcCeEEEEEeCCCc-
Confidence 8899999998 466677 777 33321 131 233 5678999999988 7777777 666655544
Q ss_pred cCCCceeEEe
Q psy4529 86 KGAPGRFVYV 95 (123)
Q Consensus 86 kg~PgrF~Yt 95 (123)
.+.+.+|.|.
T Consensus 81 ~~~~~~f~y~ 90 (90)
T smart00429 81 PSSPQPFTYV 90 (90)
T ss_pred cCcccCeEEC
Confidence 3446778774
No 9
>cd01180 IPT_plexin_repeat1 First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=96.60 E-value=0.012 Score=40.06 Aligned_cols=70 Identities=20% Similarity=0.137 Sum_probs=50.8
Q ss_pred ceeeecCCCC---CCCeEE-Eec--cCCcc------c--cc---c-----ccccccccccCCCCCCC-cceEEEEEeecc
Q psy4529 26 PVTRASSPTS---TPNSHF-INA--NTSGW------N--HC---T-----LITSHAIRVQTPPRHIP-GVVEVTLSYKSK 82 (123)
Q Consensus 26 pci~aisp~e---~g~s~i-iig--~~t~~------v--ws---E-----LItpHAiRVqTPPrh~P-GvVeVTLsyKsK 82 (123)
|.|-+++|.. .|+++| |-| |.... | .. . -.+.+.|.++|+|...+ +...|.+.+.++
T Consensus 1 P~I~~i~P~~Gp~~GGT~vTI~G~nl~~~~~~~~~~V~ig~~~C~i~~~~~~~~~~I~C~t~~~~~~~~~~~V~V~v~~~ 80 (94)
T cd01180 1 PVITEFFPLSGPLEGGTRLTICGSNLGLRKNDVRHGVRVGGVPCNPEPPEYSSSEKIVCTTGPAGNPVFNGPVEVTVGHG 80 (94)
T ss_pred CeeEEEeCCCCCCCCCEEEEEEEEcCCCCcccceeEEEECCEECcccCCCcCcCCEEEEECCCCCCCCcceEEEEEECCc
Confidence 7899999999 467888 777 44431 1 11 1 23567899999987655 788888888887
Q ss_pred ccccCCCceeEEe
Q psy4529 83 QFCKGAPGRFVYV 95 (123)
Q Consensus 83 qfckg~PgrF~Yt 95 (123)
+|+.-....|.|+
T Consensus 81 ~~~~~~~~~F~Y~ 93 (94)
T cd01180 81 SFRTESSEGFSFV 93 (94)
T ss_pred eecccccCceEEe
Confidence 7777677889987
No 10
>cd01181 IPT_plexin_repeat3 Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=91.47 E-value=0.82 Score=31.81 Aligned_cols=57 Identities=14% Similarity=0.275 Sum_probs=37.2
Q ss_pred ceeeecCCCC---CCCeEE-Eec--cCCc-----ccc--------ccccccccccccCCCCCC------CcceEEEEEee
Q psy4529 26 PVTRASSPTS---TPNSHF-INA--NTSG-----WNH--------CTLITSHAIRVQTPPRHI------PGVVEVTLSYK 80 (123)
Q Consensus 26 pci~aisp~e---~g~s~i-iig--~~t~-----~vw--------sELItpHAiRVqTPPrh~------PGvVeVTLsyK 80 (123)
|.|.+|+|+- .|+++| |.| |.++ .|| ..+.+...|.+.||+-.. ++...|.+.+.
T Consensus 1 P~I~~i~P~~g~~SGGt~itV~G~~Lds~q~p~~~V~~~~~~~~~C~v~s~~~i~C~tP~~~~~~~~~~~~~~~~~~~fd 80 (99)
T cd01181 1 PTITRIEPEWSFLSGGTPITVTGTNLNTVQEPRIRVKYGGVEKTSCKVRNSTLMTCPAPSLALLNRSPEPGERPVEFGLD 80 (99)
T ss_pred CEEEEeccCCCccCCCEEEEEEeeccCcccccEEEEEECCceeccceeCCCCEEEeCCCCCcccccccCCCCcCeEEEEe
Confidence 7899999988 688888 888 2222 221 224677888999988765 24445555554
Q ss_pred cc
Q psy4529 81 SK 82 (123)
Q Consensus 81 sK 82 (123)
..
T Consensus 81 ~~ 82 (99)
T cd01181 81 GD 82 (99)
T ss_pred cc
Confidence 43
No 11
>KOG0520|consensus
Probab=90.72 E-value=0.45 Score=46.01 Aligned_cols=73 Identities=23% Similarity=0.358 Sum_probs=55.2
Q ss_pred eeecCCCC----CCCeEEEec-------------cCCccccccccccccccccCCCCCCCcceEEEEEee-ccccccCCC
Q psy4529 28 TRASSPTS----TPNSHFINA-------------NTSGWNHCTLITSHAIRVQTPPRHIPGVVEVTLSYK-SKQFCKGAP 89 (123)
Q Consensus 28 i~aisp~e----~g~s~iiig-------------~~t~~vwsELItpHAiRVqTPPrh~PGvVeVTLsyK-sKqfckg~P 89 (123)
|.-+||.. +|.-++|+| |+-..|=.|||.+=-+|+.+|| |-||+|...+... +..+|.-.=
T Consensus 407 I~DfSP~Wsy~~ggvKVlV~G~~~~~~~~~ysc~Fg~~~VPAeliq~GVLrC~~P~-h~~G~V~l~V~c~~~~~~~se~r 485 (975)
T KOG0520|consen 407 ITDFSPEWSYLDGGVKVLVTGFPQDETRSNYSCMFGEQRVPAELIQEGVLRCYAPP-HEPGVVNLQVTCRISGLACSEVR 485 (975)
T ss_pred eeccCcccccCCCCcEEEEecCccccCCCceEEEeCCccccHHHhhcceeeeecCc-cCCCeEEEEEEecccceeeeeeh
Confidence 66677765 777788999 5555677789999999999988 9999999999888 777776443
Q ss_pred ceeEEeecCCCcc
Q psy4529 90 GRFVYVSLNEPTI 102 (123)
Q Consensus 90 grF~Yt~l~EPtI 102 (123)
-|-|..+..+-|
T Consensus 486 -ef~~~~~~~~~~ 497 (975)
T KOG0520|consen 486 -EFAYLVQPSQQI 497 (975)
T ss_pred -heeecccCcccc
Confidence 455655444443
No 12
>PLN02397 aspartate transaminase
Probab=61.60 E-value=4.3 Score=33.49 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=23.1
Q ss_pred CceeEEeecCCCcchhhhhhhhhhc
Q psy4529 89 PGRFVYVSLNEPTIDYGFQRLQKLI 113 (123)
Q Consensus 89 PgrF~Yt~l~EPtIdygFqRLqKli 113 (123)
.||+.++++++..||++++||.++|
T Consensus 395 ~~Ri~~~~~~~~~i~~~~~~i~~~~ 419 (423)
T PLN02397 395 DGRISMAGLSSKNVPYLADAIHAVV 419 (423)
T ss_pred CCeEEEeeCCHHHHHHHHHHHHHHH
Confidence 4699999999999999999999987
No 13
>cd00604 IPT_CGTD IPT domain (domain D) of cyclodextrin glycosyltransferase (CGTase) and similar enzymes. These enzymes are involved in the enzymatic hydrolysis of alpha-1,4 linkages of starch polymers and belong to the glycosyl hydrolase family 13. Most consist of three domains (A,B,C) but CGTase is more complex and has two additional domains (D,E). The function of the IPT/D domain is unknown.
Probab=56.65 E-value=47 Score=22.54 Aligned_cols=66 Identities=20% Similarity=0.227 Sum_probs=40.4
Q ss_pred ceeeecCCCC--CCCeEEEec--cCCc--ccc-----cc--ccccccccccCCCCCCCcceEEEEEeeccccccCCCcee
Q psy4529 26 PVTRASSPTS--TPNSHFINA--NTSG--WNH-----CT--LITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRF 92 (123)
Q Consensus 26 pci~aisp~e--~g~s~iiig--~~t~--~vw-----sE--LItpHAiRVqTPPrh~PGvVeVTLsyKsKqfckg~PgrF 92 (123)
|.|.+|.|+. -|+.+.|.| |++. -|+ .+ -.+...|.+.-| ...+|-.+|++.-.+-+-..+-+ |
T Consensus 1 P~I~~i~P~~g~pG~~VtI~G~gFg~~~~~V~~g~~~a~v~s~sdt~I~~~VP-~~~~g~~~i~V~~~~G~~Sn~~~--f 77 (81)
T cd00604 1 PLIGSVGPVMGKPGNTVTISGEGFGSTGGTVYFGGTAAEVLSWSDTSIVVEVP-RVAPGNYNISVTTVDGVTSNGYN--F 77 (81)
T ss_pred CeEeeEcCCCCCCCCEEEEEEECCCCCccEEEECCEEEEEEEECCCEEEEEeC-CCCCCceEEEEEECCCcccCcEe--E
Confidence 6788999998 566666776 5541 111 11 224566777774 67899888888765444333333 5
Q ss_pred EE
Q psy4529 93 VY 94 (123)
Q Consensus 93 ~Y 94 (123)
.|
T Consensus 78 ~~ 79 (81)
T cd00604 78 EV 79 (81)
T ss_pred EE
Confidence 54
No 14
>KOG4029|consensus
Probab=45.93 E-value=12 Score=29.13 Aligned_cols=19 Identities=26% Similarity=0.669 Sum_probs=17.4
Q ss_pred CcchhhhhhhhhhcCCCCC
Q psy4529 100 PTIDYGFQRLQKLIPRHPG 118 (123)
Q Consensus 100 PtIdygFqRLqKliPRhPG 118 (123)
-.+.+||++|.+.||-.|.
T Consensus 122 ~~vN~~f~~Lr~~lP~~~~ 140 (228)
T KOG4029|consen 122 QSVNSAFAELRALLPTEPP 140 (228)
T ss_pred cchhhhhHHHHhcCCCCCC
Confidence 3789999999999999997
No 15
>cd02849 CGTase_C_term Cgtase (cyclodextrin glycosyltransferase) C-terminus domain. Enzymes such as amylases, cyclomaltodextrinase (CDase), and CGTase degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues present in starch. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs) (consisting of six, seven, or eight glucoses, respectively). CGTases are characterized as depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and which are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The C-terminus of CGTase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These d
Probab=43.94 E-value=62 Score=21.94 Aligned_cols=51 Identities=22% Similarity=0.233 Sum_probs=35.9
Q ss_pred cceeeecCCCC--CCCeEEEec--cCCc-------------cccccccccccccccCCCCCCCcceEEEEEee
Q psy4529 25 IPVTRASSPTS--TPNSHFINA--NTSG-------------WNHCTLITSHAIRVQTPPRHIPGVVEVTLSYK 80 (123)
Q Consensus 25 ~pci~aisp~e--~g~s~iiig--~~t~-------------~vwsELItpHAiRVqTPPrh~PGvVeVTLsyK 80 (123)
.|.|.+|+|+. -|+.+.|-| |++. .+| +.-.|.+.-| ...+|-.+|++.-.
T Consensus 2 ~P~I~~i~P~~g~~G~~VtI~G~gFg~~~~~V~~g~~~a~v~s~----sdt~I~~~vP-~~~aG~~~V~V~~~ 69 (81)
T cd02849 2 TPLIGHVGPMMGKAGNTVTISGEGFGSAPGTVYFGTTAATVISW----SDTRIVVTVP-NVPAGNYDVTVKTA 69 (81)
T ss_pred CCEEeeEcCCCCCCCCEEEEEEECCCCCCcEEEECCEEeEEEEE----CCCEEEEEeC-CCCCceEEEEEEeC
Confidence 48999999998 555566776 5521 334 4556677774 56799999998865
No 16
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=43.94 E-value=13 Score=29.81 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=21.1
Q ss_pred ceeEEeecCCCcchhhhhhhhhhc
Q psy4529 90 GRFVYVSLNEPTIDYGFQRLQKLI 113 (123)
Q Consensus 90 grF~Yt~l~EPtIdygFqRLqKli 113 (123)
|||.|.++++-.|+.+++||..++
T Consensus 373 ~ri~~~~~~~~~i~~~~~~i~~~~ 396 (396)
T PRK09257 373 GRINVAGLNESNIDYVAEAIAAVL 396 (396)
T ss_pred CeEEEeeCCHHHHHHHHHHHHhhC
Confidence 699999999999999999997653
No 17
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=33.70 E-value=75 Score=24.84 Aligned_cols=59 Identities=34% Similarity=0.430 Sum_probs=39.8
Q ss_pred cccccccccccccCCCCCCCcceEEEEEeecc---c-cccCCCceeEEeecCCCcchhhhhhhhhhc
Q psy4529 51 HCTLITSHAIRVQTPPRHIPGVVEVTLSYKSK---Q-FCKGAPGRFVYVSLNEPTIDYGFQRLQKLI 113 (123)
Q Consensus 51 wsELItpHAiRVqTPPrh~PGvVeVTLsyKsK---q-fckg~PgrF~Yt~l~EPtIdygFqRLqKli 113 (123)
=|.|...|||--|+-| +||.+-..+.|-.. . |---.--+|++++. .-+.+-.|| |||+-
T Consensus 37 astlhgV~aI~tq~~p--~~gssg~~~l~~~~f~m~I~qT~TG~kFV~~~~-k~t~na~~q-l~kiY 99 (134)
T COG5122 37 ASTLHGVSAILTQTIP--LPGSSGRLVLYFRNFVMTIFQTTTGTKFVFVAE-KRTVNALFQ-LQKIY 99 (134)
T ss_pred eechhhhhhhhhhccc--CCCCCceEEEEeccEEEEEEEecCCcEEEEEec-CCchhHHHH-HHHHH
Confidence 3568899999999955 77887766655421 1 11223347888885 567788898 67753
No 18
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=32.25 E-value=29 Score=25.48 Aligned_cols=28 Identities=14% Similarity=0.305 Sum_probs=24.8
Q ss_pred eEEeecCCCcchhhhhhhhhhcCCCCCC
Q psy4529 92 FVYVSLNEPTIDYGFQRLQKLIPRHPGL 119 (123)
Q Consensus 92 F~Yt~l~EPtIdygFqRLqKliPRhPGD 119 (123)
+..+.+|.|-.||.++.++.++-||+-|
T Consensus 99 ~~~~c~ns~Y~e~~~~~i~Ei~~~y~~D 126 (132)
T PF14871_consen 99 WYTCCLNSPYREFLLEQIREILDRYDVD 126 (132)
T ss_pred ceecCCCccHHHHHHHHHHHHHHcCCCC
Confidence 5568899999999999999999999755
No 19
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=31.68 E-value=27 Score=25.50 Aligned_cols=18 Identities=28% Similarity=0.709 Sum_probs=16.2
Q ss_pred eccccccCCCceeEEeec
Q psy4529 80 KSKQFCKGAPGRFVYVSL 97 (123)
Q Consensus 80 KsKqfckg~PgrF~Yt~l 97 (123)
+.|-.||+.-|||+|+..
T Consensus 49 ~~kvlCRN~~GKYGYV~~ 66 (89)
T PF14603_consen 49 DNKVLCRNSEGKYGYVLR 66 (89)
T ss_dssp SSEEEEEETTTEEEEEEG
T ss_pred CCeEEEeCCCCceeEEEH
Confidence 588899999999999964
No 20
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=30.16 E-value=44 Score=28.58 Aligned_cols=67 Identities=24% Similarity=0.282 Sum_probs=43.1
Q ss_pred cccccccccccCCCCC-CcccceeeecCCCCCCCeEEEeccCCccccccc---cccccccccCCCCCCCcceEEEEEeec
Q psy4529 6 SYSYDHHTLSSDPDEK-SAFIPVTRASSPTSTPNSHFINANTSGWNHCTL---ITSHAIRVQTPPRHIPGVVEVTLSYKS 81 (123)
Q Consensus 6 ~~~~~~~~~~~dp~e~-~a~~pci~aisp~e~g~s~iiig~~t~~vwsEL---ItpHAiRVqTPPrh~PGvVeVTLsyKs 81 (123)
+|+.|..++. +|... .-.-.+...|-|+.||++.-+ +.+.-+| |+-+|+||-||--| ++|+++..+.
T Consensus 182 a~T~~q~~~D-~~~~d~r~~raaa~NiIPt~tGaakav-----~~vlP~L~gki~g~avRVPt~~vs---~~dl~v~l~k 252 (337)
T PRK07403 182 SYTGDQRILD-ASHRDLRRARAAAVNIVPTSTGAAKAV-----ALVIPELKGKLNGIALRVPTPNVS---VVDLVVQVEK 252 (337)
T ss_pred eecCCccccc-ccccccccccccccccccCCcchhhhh-----hhcCcccCCcEEEEEEEeccCCcE---EEEEEEEECC
Confidence 5666664442 23221 123567778889999876532 2455566 89999999996665 5788777663
No 21
>cd01177 IPT_NFkappaB IPT domain of the transcription factor NFkappaB and related transcription factors. NFkappaB is considered a central regulator of stress responses, activated by different stressful conditions, including physical stress, oxidative stress, and exposure to certain chemicals. NFkappaB blocking cell apoptosis in several cell types, gives it an important role in cell proliferation and differentiation.
Probab=28.58 E-value=1.8e+02 Score=21.50 Aligned_cols=62 Identities=23% Similarity=0.274 Sum_probs=40.5
Q ss_pred CCCCCCeEEEec-----------cCC----cccccc--------ccccccccccCCCCCCCcc---eEEEEEee--cccc
Q psy4529 33 PTSTPNSHFINA-----------NTS----GWNHCT--------LITSHAIRVQTPPRHIPGV---VEVTLSYK--SKQF 84 (123)
Q Consensus 33 p~e~g~s~iiig-----------~~t----~~vwsE--------LItpHAiRVqTPPrh~PGv---VeVTLsyK--sKqf 84 (123)
+-.||.-+|+++ |.- ..+|.. ++--|||-..|||=+-+-+ |+|-++-+ |..-
T Consensus 12 sv~GG~Ev~LLcdKV~K~dI~VrF~e~~~~~~~We~~g~f~~~dVH~Q~AIvfkTPpY~~~~I~~pV~V~iqL~Rpsd~~ 91 (102)
T cd01177 12 SVKGGDEVYLLCDKVQKEDIQVRFFEEDEEETVWEAFGDFSQTDVHRQYAIVFRTPPYHDPDITEPVKVKIQLKRPSDGE 91 (102)
T ss_pred ccCCCcEEEEEecccCCCCCEEEEEEcCCCCCceEEEeeECHHHcccceEEEEeCCCCCCCcCCCceEEEEEEEeCCCCC
Confidence 334777777777 222 346764 5567999999999876654 45555544 4443
Q ss_pred ccCCCceeEEe
Q psy4529 85 CKGAPGRFVYV 95 (123)
Q Consensus 85 ckg~PgrF~Yt 95 (123)
.+.|-.|.|+
T Consensus 92 -~Sep~~F~Y~ 101 (102)
T cd01177 92 -RSESVPFTYV 101 (102)
T ss_pred -ccCCcceEEc
Confidence 5688889885
No 22
>KOG3610|consensus
Probab=25.76 E-value=1.2e+02 Score=30.09 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=50.3
Q ss_pred cceeeecCCCC---CCCeEE-Eec--------------cCCccccccccccccccccCCCCCCCcceEEEEEeecccccc
Q psy4529 25 IPVTRASSPTS---TPNSHF-INA--------------NTSGWNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCK 86 (123)
Q Consensus 25 ~pci~aisp~e---~g~s~i-iig--------------~~t~~vwsELItpHAiRVqTPPrh~PGvVeVTLsyKsKqfck 86 (123)
-||++.++|.- -|++.+ ++| ....-+-++.-+.+.+++.|++...++.-.|..++...+ ++
T Consensus 142 ~~~~~~~~P~~Gp~~ggt~v~~~Gs~l~~gs~~~~vv~~~~~c~~~~~~~~~~~~c~t~~~~~~~~~~~~v~f~~~~-~~ 220 (1025)
T KOG3610|consen 142 GPCFLSAEPVNGPASGGTQVHCTGSPLDTGSCPDCVVSGLGPCVISVVQDSAVIFCVTSSQGAGSEAPVLVSFDRTP-QK 220 (1025)
T ss_pred ceeEEeeccCcCCCCCCcceEEeccccccCCCceEEecCCccceeEeecCceEEEEecCCCCCCCccceEEEecccc-cc
Confidence 79999999987 344444 555 111234455667788999999999999999999987433 23
Q ss_pred CCCceeEEee
Q psy4529 87 GAPGRFVYVS 96 (123)
Q Consensus 87 g~PgrF~Yt~ 96 (123)
-+++-|.|++
T Consensus 221 ~~~~~f~y~~ 230 (1025)
T KOG3610|consen 221 LTPLAFNYTA 230 (1025)
T ss_pred cCCCCccccc
Confidence 3377899986
No 23
>cd01178 IPT_NFAT IPT domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.
Probab=24.99 E-value=2.8e+02 Score=20.33 Aligned_cols=69 Identities=20% Similarity=0.256 Sum_probs=42.9
Q ss_pred ceeeecCCCC----CCCeEEEec----------cCC-----cccccc-------ccccccccccCCCCCCCc---ceEEE
Q psy4529 26 PVTRASSPTS----TPNSHFINA----------NTS-----GWNHCT-------LITSHAIRVQTPPRHIPG---VVEVT 76 (123)
Q Consensus 26 pci~aisp~e----~g~s~iiig----------~~t-----~~vwsE-------LItpHAiRVqTPPrh~PG---vVeVT 76 (123)
|-|-..|-++ ||.-.|++| |.- ..+|.. .+-.-||-++|||=+-+- .|.|.
T Consensus 2 p~I~r~s~~s~sv~GG~Ev~Ll~~k~~kDikV~F~E~~~dG~~~WE~~a~f~~~~~hQ~aIvf~tPpY~~~~I~~pV~V~ 81 (101)
T cd01178 2 PEIEKKSLNSCSVNGGEELFLTGKNFLKDSKVVFQEKGQDGEAQWEAEATIDKEKSHQNHLVVEVPPYHNKHVAAPVQVQ 81 (101)
T ss_pred CeeEEeccCceeecCCCEEEEEehhcCCCCEEEEEEeCCCCccceEEEEEeChHhceeeeEEEecCCCCCCCcCCceEEE
Confidence 4444444444 777777888 331 346764 344789999999976544 45555
Q ss_pred EEee-ccccccCCCceeEEe
Q psy4529 77 LSYK-SKQFCKGAPGRFVYV 95 (123)
Q Consensus 77 LsyK-sKqfckg~PgrF~Yt 95 (123)
+.-. +|. .+..|-.|.|+
T Consensus 82 ~~l~~~~~-~~S~~~~FtY~ 100 (101)
T cd01178 82 FYVVNGKR-KRSQPQTFTYT 100 (101)
T ss_pred EEEEcCCC-CcCCCCCcEec
Confidence 5543 332 45788889885
No 24
>COG5626 Uncharacterized small conserved protein [Function unknown]
Probab=24.87 E-value=25 Score=26.15 Aligned_cols=15 Identities=40% Similarity=0.439 Sum_probs=11.3
Q ss_pred CCcccccccccccccc
Q psy4529 46 TSGWNHCTLITSHAIR 61 (123)
Q Consensus 46 ~t~~vwsELItpHAiR 61 (123)
+....|.||| |||-|
T Consensus 12 ~a~~~W~~li-Pha~R 26 (97)
T COG5626 12 TAVISWAELI-PHAAR 26 (97)
T ss_pred cccccHHHhc-ccccc
Confidence 4456899987 88876
No 25
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=24.76 E-value=24 Score=24.01 Aligned_cols=27 Identities=37% Similarity=0.634 Sum_probs=0.0
Q ss_pred CcceEEEEEeeccccccCCCceeEEeec
Q psy4529 70 PGVVEVTLSYKSKQFCKGAPGRFVYVSL 97 (123)
Q Consensus 70 PGvVeVTLsyKsKqfckg~PgrF~Yt~l 97 (123)
-++++|++....+. -+-.||.|+|+.+
T Consensus 14 ~~~v~i~i~~~~~~-~~~~pGq~v~l~~ 40 (105)
T PF08022_consen 14 DDVVEITIPKPSSP-FKWKPGQYVFLSF 40 (105)
T ss_dssp ----------------------------
T ss_pred CCEEEEEEECCCCC-CCCCCceEEEEEE
Confidence 47788888755443 5678999999987
No 26
>PF03676 UPF0183: Uncharacterised protein family (UPF0183); InterPro: IPR005373 Members of this family are proteins of unknown function.
Probab=22.99 E-value=65 Score=28.14 Aligned_cols=37 Identities=32% Similarity=0.644 Sum_probs=26.4
Q ss_pred eEEEEEeeccccccCCCceeEEeecCCCcchhhhhhhhhhc-CCCCCCCCC
Q psy4529 73 VEVTLSYKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLI-PRHPGLYVP 122 (123)
Q Consensus 73 VeVTLsyKsKqfckg~PgrF~Yt~l~EPtIdygFqRLqKli-PRhPGDPE~ 122 (123)
..++|.|+++-| +.|.+.-.|+++.+++ |-|||..+.
T Consensus 73 ~~i~L~Y~~~~~-------------~~p~~~pTf~~Iy~~FGPTyPG~yd~ 110 (394)
T PF03676_consen 73 SKIKLRYKGSVF-------------SSPEIGPTFRHIYRLFGPTYPGEYDK 110 (394)
T ss_pred ccceEEeCcccc-------------cCcccCcchheeheccCCCCCCccCC
Confidence 347788887665 3344555688888988 999997653
No 27
>PF12539 Csm1: Chromosome segregation protein Csm1/Pcs1; InterPro: IPR020981 Saccharomyces cerevisiae Csm1 is part of the monopolin complex. Csm1 forms a complex with Mde4 and promotes monoorientation during meiosis []. It plays a mitotic role in DNA replication [] and is required for condensin recruitment to the replication fork barrier site and rDNA repeat segregation []. This entry also contains the Schizosaccharomyces pombe homologue to Csm1, Pcs1. Pcs1 forms a complex with Mde4 and acts in the central kinetochore domain to clamp microtubule binding sites together[]. The two complexes (Csm1/Lrs4 and Pcs1/Mde4) contribute to the prevention of merotelic attachment [].; GO: 0005515 protein binding; PDB: 3N4S_C 3N4R_B 3N7N_A 3N4X_B.
Probab=22.81 E-value=1.1e+02 Score=21.92 Aligned_cols=29 Identities=28% Similarity=0.480 Sum_probs=20.5
Q ss_pred CCceeEEeecCCCcchhhhhhhhhhcCCC
Q psy4529 88 APGRFVYVSLNEPTIDYGFQRLQKLIPRH 116 (123)
Q Consensus 88 ~PgrF~Yt~l~EPtIdygFqRLqKliPRh 116 (123)
.-..|.|+-+-++.-|=-++.|+|++|-|
T Consensus 51 ~~~e~~Y~P~l~~~~d~~~~~L~~~LPdY 79 (90)
T PF12539_consen 51 EDTEFTYVPLLDENRDRNLKELIKILPDY 79 (90)
T ss_dssp T--EEEEEEE-SSS-HHHHHHHHHHS-GG
T ss_pred CCceEEEEeccCcccchhHHHHHHHCcHh
Confidence 33599999877888887888999999976
No 28
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=22.68 E-value=82 Score=23.99 Aligned_cols=42 Identities=17% Similarity=0.361 Sum_probs=25.4
Q ss_pred cccccccccCCCCCCCcceEEEEEeeccccccCCCceeEEeecC
Q psy4529 55 ITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLN 98 (123)
Q Consensus 55 ItpHAiRVqTPPrh~PGvVeVTLsyKsKqfckg~PgrF~Yt~l~ 98 (123)
++++..+|..-=.--+.++.++|. .. ....-.||+|..+.+.
T Consensus 2 ~~~~~~~V~~~~~~t~d~~~l~l~-~~-~~~~~~pGQ~v~l~~~ 43 (250)
T PRK00054 2 MKPENMKIVENKEIAPNIYTLVLD-GE-KVFDMKPGQFVMVWVP 43 (250)
T ss_pred CCceEEEEEEEEEecCCeEEEEEe-Cc-cccCCCCCcEEEEEeC
Confidence 345555554433345678888887 22 4445678888887753
No 29
>KOG0561|consensus
Probab=21.12 E-value=43 Score=29.78 Aligned_cols=20 Identities=45% Similarity=0.825 Sum_probs=18.2
Q ss_pred CcchhhhhhhhhhcCCCCCC
Q psy4529 100 PTIDYGFQRLQKLIPRHPGL 119 (123)
Q Consensus 100 PtIdygFqRLqKliPRhPGD 119 (123)
..|.-|||-|.-|+||+-|.
T Consensus 73 QSINAGFqsLr~LlPr~eGE 92 (373)
T KOG0561|consen 73 QSINAGFQSLRALLPRKEGE 92 (373)
T ss_pred HhhhHHHHHHHHhcCcccch
Confidence 57899999999999999885
No 30
>KOG0256|consensus
Probab=20.58 E-value=42 Score=30.75 Aligned_cols=42 Identities=29% Similarity=0.610 Sum_probs=33.0
Q ss_pred ceEEEEEeeccccccCCCc--eeEEeecCCCcchhhhhhhhhhcC
Q psy4529 72 VVEVTLSYKSKQFCKGAPG--RFVYVSLNEPTIDYGFQRLQKLIP 114 (123)
Q Consensus 72 vVeVTLsyKsKqfckg~Pg--rF~Yt~l~EPtIdygFqRLqKliP 114 (123)
.|+|-+|--+.+.|. -|| |+.|..+.|-+++-|++||+.++-
T Consensus 417 ~vklnlSpG~s~~C~-EpGWFRvcFAn~~~~t~~~am~Ri~~~~~ 460 (471)
T KOG0256|consen 417 NVKLNLSPGSSCHCH-EPGWFRVCFANMSEETLEVAMRRLKQFLD 460 (471)
T ss_pred hhccccCCCCcceec-CCCeEEEEeccCCHHHHHHHHHHHHHHHH
Confidence 356777777777786 577 556667999999999999998874
No 31
>COG3908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.53 E-value=1.4e+02 Score=21.52 Aligned_cols=34 Identities=29% Similarity=0.493 Sum_probs=29.4
Q ss_pred CCcceEEEEEeeccccccCCCceeEEeecCCCcc
Q psy4529 69 IPGVVEVTLSYKSKQFCKGAPGRFVYVSLNEPTI 102 (123)
Q Consensus 69 ~PGvVeVTLsyKsKqfckg~PgrF~Yt~l~EPtI 102 (123)
-||-.|-.+-|..-.|-.=.||+|+-|+++--.|
T Consensus 7 g~~~~ea~iryldgdf~vv~~GsfV~CAVtgk~I 40 (77)
T COG3908 7 GPGSREAVIRYLDGDFQVVSPGSFVLCAVTGKPI 40 (77)
T ss_pred CCCCceeEEEEecCceEEEcCCcEEEEEecCCcc
Confidence 3788899999999999999999999999776555
No 32
>TIGR01573 cas2 CRISPR-associated endoribonuclease Cas2. This model describes most members of the family of Cas2, one of the first four protein families found to mark prokaryotic genomes that contain multiple CRISPR elements. It is an endoribonuclease, capable of cleaving single-stranded RNA. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats. The cas genes are found near the repeats. A distinct branch of the Cas2 family shows a very low level of sequence identity and is modeled by TIGR01873 instead.
Probab=20.51 E-value=31 Score=23.65 Aligned_cols=11 Identities=45% Similarity=0.664 Sum_probs=7.6
Q ss_pred chhhhhhhhhh
Q psy4529 102 IDYGFQRLQKL 112 (123)
Q Consensus 102 IdygFqRLqKl 112 (123)
.+|||+|+|+=
T Consensus 26 ~~~G~~rvQ~S 36 (95)
T TIGR01573 26 EKYGLQRVQYS 36 (95)
T ss_pred HHcchhheecc
Confidence 36788887763
Done!