Query psy4529
Match_columns 123
No_of_seqs 29 out of 31
Neff 2.2
Searched_HMMs 29240
Date Fri Aug 16 19:29:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4529.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4529hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3muj_A Transcription factor CO 100.0 2.8E-51 9.6E-56 308.6 8.6 99 25-123 5-117 (138)
2 3mlp_A Transcription factor CO 100.0 2.6E-49 8.9E-54 335.5 7.4 109 13-123 221-343 (402)
3 2cxk_A Camta1, calmodulin bind 97.8 3.3E-05 1.1E-09 53.1 4.8 69 25-96 6-90 (95)
4 1uad_C RSEC5, exocyst complex 92.1 0.22 7.6E-06 33.6 4.6 70 23-95 5-93 (99)
5 4hw6_A Hypothetical protein, I 85.2 2 7E-05 34.0 6.2 69 27-95 21-106 (433)
6 3tc9_A Hypothetical hydrolase; 84.1 1.9 6.4E-05 33.9 5.5 71 25-95 17-104 (430)
7 2uzx_B Hepatocyte growth facto 83.9 0.21 7.3E-06 43.7 0.0 60 25-84 635-710 (727)
8 2uzx_B Hepatocyte growth facto 81.5 0.77 2.6E-05 40.2 2.6 74 25-103 541-639 (727)
9 2yrp_A Nuclear factor of activ 78.6 13 0.00046 26.6 8.0 77 21-97 4-109 (114)
10 3hrp_A Uncharacterized protein 61.9 19 0.00065 27.7 6.0 66 27-95 19-103 (409)
11 1u36_A DNA-binding, nuclear fa 52.6 37 0.0013 23.8 5.7 64 33-96 15-105 (106)
12 3kya_A Putative phosphatase; s 47.1 43 0.0015 28.2 6.2 68 27-95 19-102 (496)
13 3orj_A Sugar-binding protein; 45.9 29 0.001 30.1 5.1 57 22-79 110-185 (439)
14 2lfh_A DNA-binding protein inh 44.9 9.4 0.00032 25.5 1.6 19 101-119 28-46 (68)
15 3k7y_A Aspartate aminotransfer 44.4 5 0.00017 31.5 0.2 24 90-113 379-402 (405)
16 1imh_C NF-AT5, tonebp, nuclear 41.7 95 0.0032 25.1 7.3 75 21-95 177-279 (281)
17 1ikn_C P50D, protein (NF-kappa 41.6 93 0.0032 22.2 7.2 66 33-98 15-107 (119)
18 3aqy_A Beta-1,3-glucan-binding 41.5 18 0.00063 25.0 2.7 41 53-96 11-64 (106)
19 2ql2_B Neurod1, neurogenic dif 39.6 12 0.00043 23.4 1.4 18 102-119 17-34 (60)
20 2kha_A Beta-1,3-glucan-binding 36.4 26 0.00089 25.3 2.9 42 52-96 19-73 (130)
21 3meb_A Aspartate aminotransfer 34.0 11 0.00037 29.1 0.6 25 90-114 418-442 (448)
22 3orj_A Sugar-binding protein; 31.4 1.3E+02 0.0046 26.1 6.9 66 18-83 5-102 (439)
23 3mcb_A Nascent polypeptide-ass 31.0 34 0.0012 21.5 2.5 27 67-93 8-35 (54)
24 1oy3_C Transcription factor P6 27.9 82 0.0028 23.2 4.4 65 32-98 14-102 (136)
25 2dwf_A Pulmonary surfactant-as 27.8 20 0.00069 21.5 0.9 11 106-116 8-18 (34)
26 3mce_A Nascent polypeptide-ass 27.0 48 0.0016 21.5 2.7 27 67-93 14-41 (61)
27 4h51_A Aspartate aminotransfer 27.0 9.5 0.00032 30.6 -0.9 24 90-113 391-414 (420)
28 4aya_A DNA-binding protein inh 25.2 28 0.00095 24.4 1.4 24 96-119 29-57 (97)
29 1my7_A NF-kappab P65 (RELA) su 24.2 1.1E+02 0.0038 21.8 4.4 64 32-97 14-101 (114)
30 4f4e_A Aromatic-amino-acid ami 23.5 21 0.00073 26.8 0.5 24 90-113 396-419 (420)
31 2fg5_A RAB-22B, RAS-related pr 23.2 43 0.0015 22.2 2.0 39 82-120 152-191 (192)
32 1zk9_A Transcription factor RE 22.5 1.1E+02 0.0038 21.6 4.1 62 32-95 23-108 (110)
33 1mdy_A Protein (MYOD BHLH doma 22.4 36 0.0012 21.9 1.4 17 102-118 27-43 (68)
34 2lnz_A Ubiquitin-like protein 21.9 25 0.00087 23.5 0.6 8 104-111 51-58 (64)
35 1ikn_A P65, protein (NF-kappa- 21.8 1.7E+02 0.0057 23.7 5.5 70 26-97 176-273 (286)
36 1wi9_A Protein C20ORF116 homol 20.3 36 0.0012 22.9 1.1 11 89-99 58-68 (72)
No 1
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=100.00 E-value=2.8e-51 Score=308.61 Aligned_cols=99 Identities=68% Similarity=1.019 Sum_probs=95.5
Q ss_pred cceeeecCCCC----CCCeEEEec----------cCCccccccccccccccccCCCCCCCcceEEEEEeeccccccCCCc
Q psy4529 25 IPVTRASSPTS----TPNSHFINA----------NTSGWNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPG 90 (123)
Q Consensus 25 ~pci~aisp~e----~g~s~iiig----------~~t~~vwsELItpHAiRVqTPPrh~PGvVeVTLsyKsKqfckg~Pg 90 (123)
.|||++|+|+| ||..++|+| |++..+|+|+||||||||+||||++||+|||||+||+||||+|+||
T Consensus 5 ~P~I~~i~P~eG~~~GG~~V~I~G~nF~~GlqV~FG~t~~w~e~itphairv~~PP~~~pG~V~VTl~~k~kqf~~g~p~ 84 (138)
T 3muj_A 5 TPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPG 84 (138)
T ss_dssp CCEEEEEESSEEETTCCCEEEEEEESCCTTCEEEETTEEECEEEEETTEEEEECCCCSSCEEEEEEEEETTEEECTTSCE
T ss_pred CCceeEecCCCCCccCCeEEEEeCCCcccCCEEEECCeeeeeeeecccceEEECCCCCCCCceEEEEeecCcccccCCCc
Confidence 49999999999 677777999 8899999999999999999999999999999999999999999999
Q ss_pred eeEEeecCCCcchhhhhhhhhhcCCCCCCCCCC
Q psy4529 91 RFVYVSLNEPTIDYGFQRLQKLIPRHPGLYVPL 123 (123)
Q Consensus 91 rF~Yt~l~EPtIdygFqRLqKliPRhPGDPE~~ 123 (123)
||.|++||||+||||||||||+|||||||||.|
T Consensus 85 ~F~Y~~l~ePtId~gfqrl~k~~pr~pgdpe~l 117 (138)
T 3muj_A 85 RFVYTALNEPTIDYGFQRLQKVIPRHPGDPERL 117 (138)
T ss_dssp EEEEECCCSCCHHHHHHHHHHHSCCCTTCCSSC
T ss_pred eEEEecCCCCccccchhhhccccCCCCCChhhh
Confidence 999999999999999999999999999999986
No 2
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=100.00 E-value=2.6e-49 Score=335.49 Aligned_cols=109 Identities=63% Similarity=0.958 Sum_probs=89.5
Q ss_pred ccccCCCCCCcccceeeecCCCC----CCCeEEEec----------cCCccccccccccccccccCCCCCCCcceEEEEE
Q psy4529 13 TLSSDPDEKSAFIPVTRASSPTS----TPNSHFINA----------NTSGWNHCTLITSHAIRVQTPPRHIPGVVEVTLS 78 (123)
Q Consensus 13 ~~~~dp~e~~a~~pci~aisp~e----~g~s~iiig----------~~t~~vwsELItpHAiRVqTPPrh~PGvVeVTLs 78 (123)
+-.+||+| +..|||++|+|+| ||.+++|+| |+++.+|+|+||||||||+|||+++||+|||||+
T Consensus 221 a~r~~~s~--~~tP~IkaIsPnEG~~tGG~tV~IiGenFf~GLQVvFGtt~vWselITphAIRV~tPPr~~PGvVdVTLs 298 (402)
T 3mlp_A 221 ARRLDPSE--AATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVIFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLS 298 (402)
T ss_dssp CCCCCTTT--TSCCEEEECSSCEECTTCCCEEEEEEECCCTTCEEEETTEEECEEEEETTEEEEECCCCSSCEEEEEEEE
T ss_pred cccCCccc--CCCcceEEecCCCCCccCCeEEEEeCCCcccCCEEEEccEeeeeEEecccceEEECCCCCCCCceEEEEE
Confidence 45678888 5679999999999 677777999 8999999999999999999999999999999999
Q ss_pred eeccccccCCCceeEEeecCCCcchhhhhhhhhhcCCCCCCCCCC
Q psy4529 79 YKSKQFCKGAPGRFVYVSLNEPTIDYGFQRLQKLIPRHPGLYVPL 123 (123)
Q Consensus 79 yKsKqfckg~PgrF~Yt~l~EPtIdygFqRLqKliPRhPGDPE~~ 123 (123)
||+||||+|+||||+|++|||||||||||||||+|||||||||.|
T Consensus 299 ~ksKqf~kg~pgrF~YtALnePtIdygfqRLqK~iPrhpGdpErL 343 (402)
T 3mlp_A 299 YKSKQFCKGTPGRFIYTALNEPTIDYGFQRLQKVIPRHPGDPERL 343 (402)
T ss_dssp ETTEEESTTSCEEEEEC---CCTTTTTTTTTTTC-----------
T ss_pred ecCcccccCCCCceeeecCCCCccccchhhhcccCCCCCCChHhC
Confidence 999999999999999999999999999999999999999999986
No 3
>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1
Probab=97.75 E-value=3.3e-05 Score=53.07 Aligned_cols=69 Identities=19% Similarity=0.226 Sum_probs=52.1
Q ss_pred cceeeecCCCC---CCCeEE-Eec------------cCCccccccccccccccccCCCCCCCcceEEEEEeeccccccCC
Q psy4529 25 IPVTRASSPTS---TPNSHF-INA------------NTSGWNHCTLITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGA 88 (123)
Q Consensus 25 ~pci~aisp~e---~g~s~i-iig------------~~t~~vwsELItpHAiRVqTPPrh~PGvVeVTLsyKsKqfckg~ 88 (123)
+=.|..+||+. .|++.| |.| |+...+=.|++++-.||++||| |.||.|.|.+..-++. + ..
T Consensus 6 ~~~Itd~sP~~gp~sGGTkv~I~G~~L~~gs~~~~~fG~~~vpa~~~s~~vl~C~tPp-~~~G~v~~~v~~d~~~-~-s~ 82 (95)
T 2cxk_A 6 SGMVTDYSPEWSYPEGGVKVLITGPWQEASNNYSCLFDQISVPASLIQPGVLRCYCPA-HDTGLVTLQVAFNNQI-I-SN 82 (95)
T ss_dssp CSCCCEEECSEECTTCCCEEEEESSCCCCSSCEEEEETTEEEECEEEETTEEEEECCC-CCSEEEEEEEEETTEE-C-SC
T ss_pred cEEEEEECCCcccCCCCEEEEEEeECCCCCccEEEEECCEEEeEEEeECCEEEEEecC-CCCceEeEEEEECCee-c-CC
Confidence 34577888887 566665 777 3333344678999999999999 7999999999977665 4 67
Q ss_pred CceeEEee
Q psy4529 89 PGRFVYVS 96 (123)
Q Consensus 89 PgrF~Yt~ 96 (123)
...|-|..
T Consensus 83 ~~~FeY~~ 90 (95)
T 2cxk_A 83 SVVFEYKS 90 (95)
T ss_dssp CEEEEECC
T ss_pred ceEEEEeC
Confidence 77799973
No 4
>1uad_C RSEC5, exocyst complex component SEC5; small GTP-binding protein, immunogloblin-like fold, beta- sandwich, endocytosis/exocytosis complex; HET: GNP; 2.10A {Rattus norvegicus} SCOP: b.1.18.18 PDB: 1hk6_A
Probab=92.10 E-value=0.22 Score=33.56 Aligned_cols=70 Identities=17% Similarity=0.128 Sum_probs=44.5
Q ss_pred cccceeeecCCCCC-CCeEE-Eec--cCCccc--c------------ccccccccccccCCCCC-CCcceEEEEEeeccc
Q psy4529 23 AFIPVTRASSPTST-PNSHF-INA--NTSGWN--H------------CTLITSHAIRVQTPPRH-IPGVVEVTLSYKSKQ 83 (123)
Q Consensus 23 a~~pci~aisp~e~-g~s~i-iig--~~t~~v--w------------sELItpHAiRVqTPPrh-~PGvVeVTLsyKsKq 83 (123)
-+.|.|..|+|.+| .++++ |-| |+.... + .+-.+..-|.+.++|.. ..|.|+|+.. ++
T Consensus 5 ~p~P~It~i~P~~Gp~GT~vTI~G~nlg~~~sdv~~V~vgg~~C~~~~~~~s~~~IvC~~~~~~~~~g~V~V~v~--~~- 81 (99)
T 1uad_C 5 RQPPLVTGISPNEGIPWTKVTIRGENLGTGPTDLIGLTICGHNCLLTAEWMSASKIVCRVGQAKNDKGDIIVTTK--SG- 81 (99)
T ss_dssp CCCCEEEEEESSEESTTCEEEEEEECSCSSGGGEEEEEETTEECGGGCEEEETTEEEEECCCCSSSSCCEEEEET--TT-
T ss_pred CCCCEEEEEECCCcCCCCEEEEEEEeCCCCcccceEEEECCEEceEeeceeecCEEEEEeCCCCCcceeEEEEEC--CC-
Confidence 34699999999997 45777 766 443321 1 12345667888886653 3788888773 22
Q ss_pred cccCCCceeEEe
Q psy4529 84 FCKGAPGRFVYV 95 (123)
Q Consensus 84 fckg~PgrF~Yt 95 (123)
+..-++.+|.|+
T Consensus 82 ~~~~s~~~F~y~ 93 (99)
T 1uad_C 82 GRGTSTVSFKLL 93 (99)
T ss_dssp EECEESSCCEEC
T ss_pred CcEEecceEEEe
Confidence 222345689997
No 5
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=85.15 E-value=2 Score=33.95 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=45.8
Q ss_pred eeeecCCCC-CCCe-EEEec--cCCcc----cc-----cccc--ccccccccCCCCCCCcceEEEEEeeccc--cccCCC
Q psy4529 27 VTRASSPTS-TPNS-HFINA--NTSGW----NH-----CTLI--TSHAIRVQTPPRHIPGVVEVTLSYKSKQ--FCKGAP 89 (123)
Q Consensus 27 ci~aisp~e-~g~s-~iiig--~~t~~----vw-----sELI--tpHAiRVqTPPrh~PGvVeVTLsyKsKq--fckg~P 89 (123)
+|..++|.| +.++ ++|.| |++.. || ..++ +..-|.|..|.....|-++|++.-.++. +---+.
T Consensus 21 ~i~~~~P~~g~~~~~~~i~G~nfg~~~~~~~v~~~~~~a~v~~~~~~~i~~~vp~~~~~g~~~v~v~~~~~~~~~~~~~~ 100 (433)
T 4hw6_A 21 VVEKFLPTEGRKGTRVVVYGRNFGNDVSKVKVTIGGYPAKVINVKGESLLCICPSKAYEGDVKVSVVGDDEAELKSGVCE 100 (433)
T ss_dssp EEEEEESSEECTTCEEEEEEECCCSCGGGEEEEETTEEEEEEEECSSEEEEECCTTCTTCCEEEEEECTTSCEEEEEECS
T ss_pred EEEEECCCCCCCCCEEEEEeECCCCCcceeEEEECCEEEEEEEeCCCEEEEEeCCCCCCCCEEEEEecCCcceeeEEEee
Confidence 999999999 4444 55778 76653 22 1233 4567889998888889999988655542 112235
Q ss_pred ceeEEe
Q psy4529 90 GRFVYV 95 (123)
Q Consensus 90 grF~Yt 95 (123)
.+|.|.
T Consensus 101 ~~F~y~ 106 (433)
T 4hw6_A 101 AKFDYQ 106 (433)
T ss_dssp SCCEEC
T ss_pred eEEEEE
Confidence 577775
No 6
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=84.08 E-value=1.9 Score=33.94 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=47.2
Q ss_pred cceeeecCCCC-CCCeEE-Eec--cCCcc----cc-----ccc--cccccccccCCCCCCCcceEEEEEeeccc--cccC
Q psy4529 25 IPVTRASSPTS-TPNSHF-INA--NTSGW----NH-----CTL--ITSHAIRVQTPPRHIPGVVEVTLSYKSKQ--FCKG 87 (123)
Q Consensus 25 ~pci~aisp~e-~g~s~i-iig--~~t~~----vw-----sEL--ItpHAiRVqTPPrh~PGvVeVTLsyKsKq--fckg 87 (123)
-|+|..++|.+ ++++.+ |.| |++.. |+ ..+ .+..-|.|..|.....|.++|++.-+.|. |---
T Consensus 17 p~~i~~~~P~~g~~~~~~~i~G~nfg~~~~~~~v~~~~~~~~v~~~~~~~i~~~vp~~~~~g~~~v~~~~~~~~~~~~~~ 96 (430)
T 3tc9_A 17 PVVISEFSPKEGGLGTRMLLYGENFGSDISKIKVTIGGQDSKVVGAKGKSLYCVVPAKAYDGDIKLSILNDEGEEIANTE 96 (430)
T ss_dssp CCEEEEEECSEECTTCEEEEEEECCCSCGGGEEEEETTEEECEEEECSSEEEEECCTTCTTCCEEEEEECTTSCEEEEEE
T ss_pred CCEEEEEcCCCCCCCCEEEEEEEcCCCCccceEEEECCEEEEEEEECCCEEEEEeCCCCCCccEEEEEecCCcceeeEEE
Confidence 34999999999 455555 777 76643 22 112 46778889997666559999998776642 1122
Q ss_pred CCceeEEe
Q psy4529 88 APGRFVYV 95 (123)
Q Consensus 88 ~PgrF~Yt 95 (123)
++.+|.|.
T Consensus 97 ~~~~F~y~ 104 (430)
T 3tc9_A 97 ANEKFVYQ 104 (430)
T ss_dssp CSSCCEEC
T ss_pred EeeEEEEE
Confidence 46788775
No 7
>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A
Probab=83.85 E-value=0.21 Score=43.74 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=1.6
Q ss_pred cceeeecCCCC---CCCeEE-Eec--cCCcc---cc-c------cccccccccccCCCCCCCcceEEEEEeecccc
Q psy4529 25 IPVTRASSPTS---TPNSHF-INA--NTSGW---NH-C------TLITSHAIRVQTPPRHIPGVVEVTLSYKSKQF 84 (123)
Q Consensus 25 ~pci~aisp~e---~g~s~i-iig--~~t~~---vw-s------ELItpHAiRVqTPPrh~PGvVeVTLsyKsKqf 84 (123)
.|.|.+|+|+. .|++.| |.| |.+.- |. . ...+...|.+.|||...+|.+.|++...+.++
T Consensus 635 ~P~I~sisP~~G~~sGGt~ITI~G~nf~~~~~~~V~ig~~~C~i~~~s~t~I~C~tP~~~~~g~~~V~V~idg~~~ 710 (727)
T 2uzx_B 635 DPVITSISPKYGPMAGGTLLTLTGNYLNSGNSRHISIGGKTCTLKSVSNSILECYTPAQTISTEFAVKLKIDLANR 710 (727)
T ss_dssp CC--------------------------------------------------------------------------
T ss_pred cceeEEECCCccccCCCEEEEEEEECCCCCCceEEEECCEEeeEEeecCCEEEEEcCCCCCCceEEEEEEECCEEe
Confidence 69999999998 356666 777 33221 00 0 22567789999999999999999998877664
No 8
>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A
Probab=81.46 E-value=0.77 Score=40.23 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=39.6
Q ss_pred cceeeecCCCC---CCCeEE-Eec--cCCc----------ccc---------ccccccccccccCCCCCCCcceEEEEEe
Q psy4529 25 IPVTRASSPTS---TPNSHF-INA--NTSG----------WNH---------CTLITSHAIRVQTPPRHIPGVVEVTLSY 79 (123)
Q Consensus 25 ~pci~aisp~e---~g~s~i-iig--~~t~----------~vw---------sELItpHAiRVqTPPrh~PGvVeVTLsy 79 (123)
.|.|.+|+|+. .|++.| |.| |+.. -|. .+..+...|.+.+||.. .|..+|++..
T Consensus 541 ~P~ItsI~P~~Gp~~GGT~vTI~G~nf~~~~~~~~~~~~~~V~igg~~C~~~~~~~s~t~I~C~tp~~~-~~~~~v~V~v 619 (727)
T 2uzx_B 541 LPAIYKVFPNSAPLEGGTRLTICGWDFGFRRNNKFDLKKTRVLLGNESCTLTLSESTMNTLKCTVGPAM-NKHFNMSIII 619 (727)
T ss_dssp CCEEEEEESSBCCSSCCCEEEEEEECCCEEETTEEESTTCEEEETTEECEECGGGCCSSEEEEECCC------CCCEEEE
T ss_pred CCEEeccCCCcccCCCCEEEEEEEecCCCCcccccCCcccEEEECCCccceeeeeccCCEEEEEeCCCC-CCCccEEEEE
Confidence 69999999998 356666 888 4421 111 01246678999998865 3444444443
Q ss_pred eccccccCCCceeEEeecCCCcch
Q psy4529 80 KSKQFCKGAPGRFVYVSLNEPTID 103 (123)
Q Consensus 80 KsKqfckg~PgrF~Yt~l~EPtId 103 (123)
.+.+. ...+..|.|+ .|+|.
T Consensus 620 ~~~~~-~~~~~~FtY~---~P~I~ 639 (727)
T 2uzx_B 620 SNGHG-TTQYSTFSYV---DPVIT 639 (727)
T ss_dssp ECSSC-EEEEECCBCC---CC---
T ss_pred eCCcc-eecccccccc---cceeE
Confidence 33221 1235578885 67664
No 9
>2yrp_A Nuclear factor of activated T-cells, cytoplasmic 4; beta-sandwich, immunoglobulin-like fold, TIG domain, IPT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.58 E-value=13 Score=26.59 Aligned_cols=77 Identities=12% Similarity=0.152 Sum_probs=53.7
Q ss_pred CCcccceeeecCCCC----CCCeEEEec----------cCC-----cccccc-------ccccccccccCCCCC---CCc
Q psy4529 21 KSAFIPVTRASSPTS----TPNSHFINA----------NTS-----GWNHCT-------LITSHAIRVQTPPRH---IPG 71 (123)
Q Consensus 21 ~~a~~pci~aisp~e----~g~s~iiig----------~~t-----~~vwsE-------LItpHAiRVqTPPrh---~PG 71 (123)
...+.|.|-..|-++ ||.-.|++| |.. ..+|.. +.-+-||-+.|||=+ +..
T Consensus 4 ~a~~~P~I~k~s~~s~~v~GG~Ev~Ll~~k~~kd~kV~F~E~~~dG~~~WE~~a~f~~d~~~q~aivf~tPpY~~~~I~~ 83 (114)
T 2yrp_A 4 GSSGLPQVEAYSPSACSVRGGEELVLTGSNFLPDSKVVFIERGPDGKLQWEEEATVNRLQSNEVTLTLTVPEYSNKRVSR 83 (114)
T ss_dssp CCCSCCEEEEEESSCEETTCCSEEEEEEESCCTTCEEEEECBCTTSCBCCCCBCCBCTTTCBTTEEEEECCCCSCCSCSS
T ss_pred CCCCCCEEEEecCcccccCCCCEEEEEecccCCCCEEEEEEECCCCCcceEEeeEEChHHcccccEEEecCCCCCCccCC
Confidence 345689998888777 777888888 221 146763 566779999999954 667
Q ss_pred ceEEEEEeeccccccCCCceeEEeec
Q psy4529 72 VVEVTLSYKSKQFCKGAPGRFVYVSL 97 (123)
Q Consensus 72 vVeVTLsyKsKqfckg~PgrF~Yt~l 97 (123)
.|.|.+.-.+.-=.+..|-.|.|+-+
T Consensus 84 pV~V~~~l~~~~rk~Se~~~FtY~P~ 109 (114)
T 2yrp_A 84 PVQVYFYVSNGRRKRSPTQSFRFLPV 109 (114)
T ss_dssp CEEEEEEEECSSSCBCCCEEEEEECC
T ss_pred CeEEEEEECCCCCcccCCcCcEEech
Confidence 77787655221113578999999864
No 10
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=61.89 E-value=19 Score=27.75 Aligned_cols=66 Identities=15% Similarity=0.302 Sum_probs=42.1
Q ss_pred eeeecCCCC-CCCeE-EEec--cCCcccc-------------ccc--cccccccccCCCCCCCcceEEEEEeeccccccC
Q psy4529 27 VTRASSPTS-TPNSH-FINA--NTSGWNH-------------CTL--ITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKG 87 (123)
Q Consensus 27 ci~aisp~e-~g~s~-iiig--~~t~~vw-------------sEL--ItpHAiRVqTPPrh~PGvVeVTLsyKsKqfckg 87 (123)
.|..++|.+ ++++. +|.| |++.+.- +++ -+.+-|.|..| +..+|..+|++.-.+ +.-.
T Consensus 19 ~~~~~~p~~g~~~~~~~i~g~nfg~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~vp-~~~~g~~~i~v~~~~-~~~~- 95 (409)
T 3hrp_A 19 TVESFMPVEGKLREKVIVKGSNFGTDKSKVKVYFVDEAAERLSTVIGIDNNTLYCLAP-RQLPGGNRIKVIVDG-KEVT- 95 (409)
T ss_dssp EEEEEECSEECTTCEEEEEEECCCSCGGGEEEEEECSSCEEEEEEEEEETTEEEEECC-SCCSEEEEEEEEETT-EEEE-
T ss_pred EEEEEcCCCCCCCcEEEEEeEcCCCCccceEEEECCcccceEEEEEEECCCEEEEEEC-CCCCCcEEEEEEECC-eeEE-
Confidence 999999999 44444 4777 7764322 222 24566778884 555698888876444 3222
Q ss_pred CCceeEEe
Q psy4529 88 APGRFVYV 95 (123)
Q Consensus 88 ~PgrF~Yt 95 (123)
+..+|.|.
T Consensus 96 ~~~~F~y~ 103 (409)
T 3hrp_A 96 TDGTFKYE 103 (409)
T ss_dssp CSSCEEEC
T ss_pred EeeeEEEe
Confidence 56788876
No 11
>1u36_A DNA-binding, nuclear factor NF-kappa-B P105 subunit; transcription factor, NF-KB, dimerization domain, intertwined folding; 1.89A {Mus musculus} SCOP: b.1.18.1 PDB: 1u3z_A 1u3y_A 3jv4_B 1bfs_A 1u3j_A 1u42_A 1u41_A 1nfi_B
Probab=52.59 E-value=37 Score=23.79 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=42.3
Q ss_pred CCCCCCeEEEec-----------cC----Ccccccc--------ccccccccccCCCCC---CCcceEEEEEeecc-ccc
Q psy4529 33 PTSTPNSHFINA-----------NT----SGWNHCT--------LITSHAIRVQTPPRH---IPGVVEVTLSYKSK-QFC 85 (123)
Q Consensus 33 p~e~g~s~iiig-----------~~----t~~vwsE--------LItpHAiRVqTPPrh---~PGvVeVTLsyKsK-qfc 85 (123)
|-.||.-+|++| |. ...+|.. +.-..||-+.|||=+ +.-.|+|.+.-+.. .-.
T Consensus 15 ~v~GG~Ev~Llc~kv~K~dikV~F~E~~~~g~~WE~~~~f~~~dvh~Q~aIvf~tPpY~~~~I~~pV~V~~~l~r~sd~~ 94 (106)
T 1u36_A 15 CVTGGEEIWLLCDKVQKDDIQIRFYEEEENGGVWEGFGDFSPTDVHRQFAICFKTPKYKDVNITKPASVFVQLRRKSDLE 94 (106)
T ss_dssp ETTCCCEEEEEESCCCTTSCEEEEEECC----CEEEECBCCGGGEETTTEEEEECCCCSCTTCSSCEEEEEEEECTTTCC
T ss_pred ccCCCCEEEEEeccccCCCCEEEEEEeCCCCCceEEeeecCHHHcccceEEEEECCCCCCCccCCCEEEEEEEEcCCCCC
Confidence 445777777888 11 1246753 555679999999965 55566776666542 356
Q ss_pred cCCCceeEEee
Q psy4529 86 KGAPGRFVYVS 96 (123)
Q Consensus 86 kg~PgrF~Yt~ 96 (123)
++.|-.|.|+-
T Consensus 95 ~Sep~~FtY~P 105 (106)
T 1u36_A 95 TSEPKPFLYYP 105 (106)
T ss_dssp BCCCEEEEEEC
T ss_pred ccCCcCcEEcC
Confidence 68899999974
No 12
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=47.11 E-value=43 Score=28.20 Aligned_cols=68 Identities=16% Similarity=0.220 Sum_probs=44.3
Q ss_pred eeeecCCCC-CCCeEE-Eec--cCCcc---------ccccccc--cccccccCCCCCCCcceEEEEEeeccc-cccCCCc
Q psy4529 27 VTRASSPTS-TPNSHF-INA--NTSGW---------NHCTLIT--SHAIRVQTPPRHIPGVVEVTLSYKSKQ-FCKGAPG 90 (123)
Q Consensus 27 ci~aisp~e-~g~s~i-iig--~~t~~---------vwsELIt--pHAiRVqTPPrh~PGvVeVTLsyKsKq-fckg~Pg 90 (123)
.|..++|.+ +.++.+ |.| |++.+ .-..+++ ..-|.|..|.+..-|.++|++.-+... +-. ++.
T Consensus 19 ~i~~~~P~~G~~~t~~~I~G~nFg~d~~~i~V~~~~~~a~v~~~~~~~i~~~vp~~~~~G~~~v~v~~~~~~~~~~-~~~ 97 (496)
T 3kya_A 19 AISDFTPKEGGAYQKLLIYGENFGTDVSKVKVKIGGKDAIVINVKSTYVYCFVPSGAFSGEIEITVGEGENAVTTT-AST 97 (496)
T ss_dssp EEEEEECSEECTTCEEEEEEECCCSCGGGEEEEETTEEECEEEECSSEEEEECCTTCTTCCEEEEESCGGGCEEEE-CSS
T ss_pred EEEEEcCCCCCCCCEEEEEeecCCCCcceeEEEECCEEEEEEEECCCEEEEEECCCCCCCcEEEEEEecCCceEEE-ecc
Confidence 788999999 334444 777 66653 2233444 677888886666559999999766531 222 356
Q ss_pred eeEEe
Q psy4529 91 RFVYV 95 (123)
Q Consensus 91 rF~Yt 95 (123)
+|.|.
T Consensus 98 ~F~Y~ 102 (496)
T 3kya_A 98 TFSYE 102 (496)
T ss_dssp CCEEC
T ss_pred eEEEE
Confidence 78775
No 13
>3orj_A Sugar-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.16A {Bacteroides ovatus}
Probab=45.87 E-value=29 Score=30.10 Aligned_cols=57 Identities=18% Similarity=0.038 Sum_probs=41.5
Q ss_pred CcccceeeecCCCC--CCCeEEEec----------cCCcccccc-cc----ccccccccCCCCCC--CcceEEEEEe
Q psy4529 22 SAFIPVTRASSPTS--TPNSHFINA----------NTSGWNHCT-LI----TSHAIRVQTPPRHI--PGVVEVTLSY 79 (123)
Q Consensus 22 ~a~~pci~aisp~e--~g~s~iiig----------~~t~~vwsE-LI----tpHAiRVqTPPrh~--PGvVeVTLsy 79 (123)
.++.|.|.++||+. .|..+.|.| |... +-.+ ++ |.-.|++.-|.--. .|.+.|+-.+
T Consensus 110 laPaPtITSISpe~~~aGd~VTItGsNF~~iskV~FgG~-veaT~~~svs~S~T~ItVtVPaGA~~~sG~ItVvT~~ 185 (439)
T 3orj_A 110 RAAAPSITKISNCMPNVGEPIIVYGSGLTEIAKVVFPGN-VVVTEGIISDLDGEYFMVDMPAGVSEEGGSIFVEGSN 185 (439)
T ss_dssp ECSCCEEEEESCSSCCTTCEEEEEEECCTTCCEEEETTT-EEECSSCEECTTSSEEEEECCTTCCTTCBCCEEEETT
T ss_pred ecCCCEEEEeCCCCCCCCCEEEEEccCCCceeEEEECCC-eeEEEEEEecCCCCEEEEEecCCCcCCCceEEEEeCC
Confidence 35689999999987 677777999 3211 1122 44 67899999998777 7999998543
No 14
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=44.94 E-value=9.4 Score=25.45 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=16.5
Q ss_pred cchhhhhhhhhhcCCCCCC
Q psy4529 101 TIDYGFQRLQKLIPRHPGL 119 (123)
Q Consensus 101 tIdygFqRLqKliPRhPGD 119 (123)
.+.-||.+|.++||-.|.|
T Consensus 28 ~lN~aF~~LR~~VP~~p~~ 46 (68)
T 2lfh_A 28 DMNHCYSRLRELVPGVPRG 46 (68)
T ss_dssp HHHHHHHHHHHHCCCCCTT
T ss_pred HHHHHHHHHHHHCCCCCCC
Confidence 4667999999999999866
No 15
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=44.43 E-value=5 Score=31.51 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=22.0
Q ss_pred ceeEEeecCCCcchhhhhhhhhhc
Q psy4529 90 GRFVYVSLNEPTIDYGFQRLQKLI 113 (123)
Q Consensus 90 grF~Yt~l~EPtIdygFqRLqKli 113 (123)
|||.|.++++-.||++.+||.+++
T Consensus 379 ~Ris~a~~~~~~i~~~~~~i~~~~ 402 (405)
T 3k7y_A 379 GRINVSGITKNNVDYIADKICLSL 402 (405)
T ss_dssp SEEEGGGCCTTHHHHHHHHHHHHH
T ss_pred CeEEEeccCHHHHHHHHHHHHHHH
Confidence 599999999999999999999876
No 16
>1imh_C NF-AT5, tonebp, nuclear factor of activated T cells 5; beta barrel, protein-DNA complex, double helix, DNA encirclement, transcription/DNA complex; 2.86A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3
Probab=41.70 E-value=95 Score=25.08 Aligned_cols=75 Identities=20% Similarity=0.176 Sum_probs=50.2
Q ss_pred CCcccceeeecCCCC----CCCeEEEec----------cCC----cccccc-------ccccccccccCCCCC---CCcc
Q psy4529 21 KSAFIPVTRASSPTS----TPNSHFINA----------NTS----GWNHCT-------LITSHAIRVQTPPRH---IPGV 72 (123)
Q Consensus 21 ~~a~~pci~aisp~e----~g~s~iiig----------~~t----~~vwsE-------LItpHAiRVqTPPrh---~PGv 72 (123)
|.+..|.|--+|-++ ||.-+|++| |.- ..+|.. .+...||-+.|||=+ +--.
T Consensus 177 k~~~~l~I~r~s~~sg~v~GG~Ev~Llc~kv~KdikVrF~E~~~d~~~WE~~~~f~~~dvhQ~aIvf~tPpY~~~~I~~p 256 (281)
T 1imh_C 177 QPAGVPEILKKSLHSCSVKGEEEVFLIGKNFLKGTKVIFQENVSDENSWKSEAEIDMELFHQNHLIVKVPPYHDQHITLP 256 (281)
T ss_dssp CCCCCCEEEEESCCEEETTCCCEEEEEEECCCTTCEEEEESSSCTTCSCEEEECBCGGGCCSSEEEEECCCCSCTTCSSC
T ss_pred CCCCCCeEEEEecCccccCCCcEEEEEeeccCCCcEEEEEEeCCCCCceEEeEEeChhhcccceEEEECCCCccCccCCC
Confidence 444567676666655 777777888 222 257864 233899999999954 5556
Q ss_pred eEEEEEeeccccccCCCceeEEe
Q psy4529 73 VEVTLSYKSKQFCKGAPGRFVYV 95 (123)
Q Consensus 73 VeVTLsyKsKqfckg~PgrF~Yt 95 (123)
|+|-+.-+..-=+.+.|-.|.|+
T Consensus 257 V~V~iqL~rsd~~~S~p~~FtY~ 279 (281)
T 1imh_C 257 VSVGIYVVTNAGRSHDVQPFTYT 279 (281)
T ss_dssp EEEEEEEEETTEECCSCEEEEEE
T ss_pred eEEEEEEEeCCCCccCCcCceec
Confidence 77777766422356788999996
No 17
>1ikn_C P50D, protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1
Probab=41.59 E-value=93 Score=22.16 Aligned_cols=66 Identities=15% Similarity=0.147 Sum_probs=44.5
Q ss_pred CCCCCCeEEEec-----------cC----Ccccccc--------ccccccccccCCCCC---CCcceEEEEEeec-cccc
Q psy4529 33 PTSTPNSHFINA-----------NT----SGWNHCT--------LITSHAIRVQTPPRH---IPGVVEVTLSYKS-KQFC 85 (123)
Q Consensus 33 p~e~g~s~iiig-----------~~----t~~vwsE--------LItpHAiRVqTPPrh---~PGvVeVTLsyKs-Kqfc 85 (123)
|-.||.-+|++| |. ...+|.. +.-..||-+.|||=+ +--.|+|.+.-.. ..-.
T Consensus 15 ~v~GG~Ev~Llc~kv~K~dikV~F~e~~~~g~~WE~~~~f~~~dvh~Q~aIvf~tPpY~~~~I~~pV~V~i~L~r~sd~~ 94 (119)
T 1ikn_C 15 CVTGGEEIYLLCDKVQKDDIQIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKDVNITKPASVFVQLRRKSDLE 94 (119)
T ss_dssp ETTCCCEEEEEESCCCTTSEEEEEEEECTTSCEEEEECCCCGGGEETTTEEEEECCCCSCTTCSSCEEEEEEEEETTTCC
T ss_pred ccCCCCEEEEEeccccCCCCEEEEEEeCCCCCceEEeEEeChhhccccceEEEECCCCCCCCcCCCEEEEEEEEcCCCCC
Confidence 444777777888 11 1246753 556789999999976 4555667665543 2345
Q ss_pred cCCCceeEEeecC
Q psy4529 86 KGAPGRFVYVSLN 98 (123)
Q Consensus 86 kg~PgrF~Yt~l~ 98 (123)
.+.|-.|.|+-.+
T Consensus 95 ~Sep~~FtY~P~~ 107 (119)
T 1ikn_C 95 TSEPKPFLYYPEI 107 (119)
T ss_dssp BCCCEEEEEECCS
T ss_pred ccCCcccEeecCc
Confidence 6889999999753
No 18
>3aqy_A Beta-1,3-glucan-binding protein; beta-sandwich, immune receptor, sugar bindi protein; 1.58A {Plodia interpunctella} PDB: 3aqz_A* 3aqx_A* 2rqe_A
Probab=41.52 E-value=18 Score=25.05 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=31.2
Q ss_pred cccccccccccCCCCCCCcceEEEEEee-cccccc------------CCCceeEEee
Q psy4529 53 TLITSHAIRVQTPPRHIPGVVEVTLSYK-SKQFCK------------GAPGRFVYVS 96 (123)
Q Consensus 53 ELItpHAiRVqTPPrh~PGvVeVTLsyK-sKqfck------------g~PgrF~Yt~ 96 (123)
|++.|..+||-.| .||+.-|-..++ ++.|-. ...|||.|..
T Consensus 11 e~l~PkG~~vSip---~pGi~lfafh~~iN~~~~~~~~g~~~~dit~~~~GrW~~~d 64 (106)
T 3aqy_A 11 EAIYPKGLRVSIP---DDGFSLFAFHGKLNEEMDGLEAGHWARDITKPKEGRWTFRD 64 (106)
T ss_dssp EEESSSCEEEEEE---CSSCSEEEEEEEESSCCCSSCCCSEEEEECCCBTTEEEEEE
T ss_pred EEeCCCcEEEEEe---CCCcEEEEEEEEecCCCCccccceeeeeeeEecCCEEEEEC
Confidence 7889999999995 899988887666 555422 5678888764
No 19
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=39.57 E-value=12 Score=23.43 Aligned_cols=18 Identities=17% Similarity=0.396 Sum_probs=15.3
Q ss_pred chhhhhhhhhhcCCCCCC
Q psy4529 102 IDYGFQRLQKLIPRHPGL 119 (123)
Q Consensus 102 IdygFqRLqKliPRhPGD 119 (123)
|.-||++|.++||-.|.|
T Consensus 17 iN~af~~LR~~lP~~~~~ 34 (60)
T 2ql2_B 17 LNAALDNLRKVVPCYSKT 34 (60)
T ss_dssp HHHHHHHHHHTSSSCCSS
T ss_pred HHHHHHHHHHHccCCCCc
Confidence 556999999999988865
No 20
>2kha_A Beta-1,3-glucan-binding protein; glycoprotein, immune response, innate immunity, secreted, sugar binding protein; NMR {Plodia interpunctella}
Probab=36.37 E-value=26 Score=25.29 Aligned_cols=42 Identities=19% Similarity=0.288 Sum_probs=32.6
Q ss_pred ccccccccccccCCCCCCCcceEEEEEee-cccccc------------CCCceeEEee
Q psy4529 52 CTLITSHAIRVQTPPRHIPGVVEVTLSYK-SKQFCK------------GAPGRFVYVS 96 (123)
Q Consensus 52 sELItpHAiRVqTPPrh~PGvVeVTLsyK-sKqfck------------g~PgrF~Yt~ 96 (123)
=|++.|..+||-.| .||+.-|-..++ ++.|-. ...|||.|..
T Consensus 19 ve~l~PkGf~VSIp---epGi~lFaFh~~iN~~~~~~~~G~~~~dit~~~~GrW~~~d 73 (130)
T 2kha_A 19 LEAIYPRGLRVSIP---DDGFSLFAFHGKLNEEMDGLEAGHWARDITKPKEGRWTFRD 73 (130)
T ss_dssp EEEETTTEEEEEEE---CCSCSEEEEEEEESCCCSSCCCCSEEEEECSCSSSEEEEEE
T ss_pred EEEeCCCCEEEEEe---CCCcEEEEEEEEccCCCcccccceeeeeeeeecCCEEEEEC
Confidence 47899999999995 899998888766 555522 5678888864
No 21
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=34.04 E-value=11 Score=29.12 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=22.4
Q ss_pred ceeEEeecCCCcchhhhhhhhhhcC
Q psy4529 90 GRFVYVSLNEPTIDYGFQRLQKLIP 114 (123)
Q Consensus 90 grF~Yt~l~EPtIdygFqRLqKliP 114 (123)
||+.+..+++-.||++.+||.+++-
T Consensus 418 gRis~a~~~~~~i~~~~~~l~~~l~ 442 (448)
T 3meb_A 418 GRMSMCGLTESNCDYVAEAIHDAVT 442 (448)
T ss_dssp GEEEGGGCCTTTHHHHHHHHHHHHH
T ss_pred cEEEEecCCHHHHHHHHHHHHHHHH
Confidence 7999988899999999999999874
No 22
>3orj_A Sugar-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.16A {Bacteroides ovatus}
Probab=31.40 E-value=1.3e+02 Score=26.05 Aligned_cols=66 Identities=6% Similarity=-0.055 Sum_probs=42.2
Q ss_pred CCCCCcccceeeecC-----CCC---------CCCeEEEec----------cCCccc--cccccccccccccCCCCCCCc
Q psy4529 18 PDEKSAFIPVTRASS-----PTS---------TPNSHFINA----------NTSGWN--HCTLITSHAIRVQTPPRHIPG 71 (123)
Q Consensus 18 p~e~~a~~pci~ais-----p~e---------~g~s~iiig----------~~t~~v--wsELItpHAiRVqTPPrh~PG 71 (123)
-||.++--|+|..|| |+. -|..+.|.| |....+ =..++|.+.|+|+-|..--+|
T Consensus 5 ~~~~~~~~i~It~vy~~~~~p~~~Ds~IT~a~pGd~ItItGsNL~~vtkV~FNdvea~fnstyiTdtsI~VtIPs~aP~G 84 (439)
T 3orj_A 5 DDNGGSSVMNITGIYLEDAKSNVPDRLVDFARLGQLIRIEGEGFNGLKKVYINGYNCYFNPVFVSNKSFLVSVNSKVPTT 84 (439)
T ss_dssp CTTCSCSSCEEEEEEEECTTSSSSEEEESEEETTCEEEEEEECCTTCCEEEETTEECCBCGGGCCSSEEEEECCTTCCST
T ss_pred ccccccCCceEEEEEecCCCccccccccccccCCCEEEEEeeCCCCeeEEEECCEEeeeccccccCCEEEEEcCCCCCCc
Confidence 377888888888886 233 455555888 322222 234789999999997655556
Q ss_pred ------ceEEEEEeeccc
Q psy4529 72 ------VVEVTLSYKSKQ 83 (123)
Q Consensus 72 ------vVeVTLsyKsKq 83 (123)
..+|++.-++.+
T Consensus 85 ~vd~~VtnkI~VvTdgGt 102 (439)
T 3orj_A 85 EADENVRNTIRLVKDGGE 102 (439)
T ss_dssp TSCTTTTTEEEEEETTEE
T ss_pred cccccccceEEEEECCCE
Confidence 236666555444
No 23
>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens} PDB: 3lkx_B
Probab=31.04 E-value=34 Score=21.52 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=20.1
Q ss_pred CCCCcceEEEEEee-ccccccCCCceeE
Q psy4529 67 RHIPGVVEVTLSYK-SKQFCKGAPGRFV 93 (123)
Q Consensus 67 rh~PGvVeVTLsyK-sKqfckg~PgrF~ 93 (123)
+.+|||.+||+-.. +.-|...+|-.|.
T Consensus 8 k~v~gI~rVti~K~~~~lf~i~~P~V~k 35 (54)
T 3mcb_A 8 RQVTGVTRVTIRKSKNILFVITKPDVYK 35 (54)
T ss_dssp EECTTEEEEEEESSSSEEEEESSCEEEE
T ss_pred EECCCEEEEEEEeCCCEEEEECCCcEEE
Confidence 46899999998653 3456678887775
No 24
>1oy3_C Transcription factor P65; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: b.1.18.1 PDB: 1k3z_A
Probab=27.90 E-value=82 Score=23.25 Aligned_cols=65 Identities=22% Similarity=0.223 Sum_probs=44.1
Q ss_pred CCCCCCCeEEEec-----------cCCcccccc--------ccccccccccCCCCCCCc---ceEEEEEe--eccccccC
Q psy4529 32 SPTSTPNSHFINA-----------NTSGWNHCT--------LITSHAIRVQTPPRHIPG---VVEVTLSY--KSKQFCKG 87 (123)
Q Consensus 32 sp~e~g~s~iiig-----------~~t~~vwsE--------LItpHAiRVqTPPrh~PG---vVeVTLsy--KsKqfckg 87 (123)
.|-.||.-+|+++ |.- -+|.. ++-..||-+.|||=+-+- .|+|.++- .|.. ..+
T Consensus 14 g~v~GG~Ev~LLceKv~K~Di~VrF~e-~~WE~~g~f~~~dVh~Q~AIvfkTPpY~~~~I~~pV~V~iqL~rpsd~-~~S 91 (136)
T 1oy3_C 14 GSCLGGDEIFLLCDKVQKEDIEVYFTG-PGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDR-ELS 91 (136)
T ss_dssp EETTCCCEEEEEESCCCTTSCEEEEEE-TTEEEECBCCGGGBCTTSEEEEECCCCSCTTCCSCEEEEEEEEETTTT-EEC
T ss_pred cccCCCcEEEEEccccccCCCEEEEEc-cCeEEecccChhheecceEEEEECCCCCCccCCCCeEEEEEEEeCCCC-Ccc
Confidence 3445787888888 322 25754 566779999999976544 34554444 4665 448
Q ss_pred CCceeEEeecC
Q psy4529 88 APGRFVYVSLN 98 (123)
Q Consensus 88 ~PgrF~Yt~l~ 98 (123)
.|-.|.|+-.+
T Consensus 92 ep~~F~Y~P~~ 102 (136)
T 1oy3_C 92 EPMEFQYLPDT 102 (136)
T ss_dssp CCEEEEEECCC
T ss_pred CCcceEEecCc
Confidence 99999999864
No 25
>2dwf_A Pulmonary surfactant-associated protein B; mini-B, SP-B, surfactant protein B, lipid associated protein, surface active protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 2jou_A
Probab=27.84 E-value=20 Score=21.49 Aligned_cols=11 Identities=36% Similarity=0.848 Sum_probs=9.2
Q ss_pred hhhhhhhcCCC
Q psy4529 106 FQRLQKLIPRH 116 (123)
Q Consensus 106 FqRLqKliPRh 116 (123)
..|+|++|||-
T Consensus 8 ikriq~vIPk~ 18 (34)
T 2dwf_A 8 IKRIQAMIPKG 18 (34)
T ss_dssp HHHHHHHCTTC
T ss_pred HHHHHhhcCCc
Confidence 46999999984
No 26
>3mce_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, homodimer, chaperone; 2.40A {Homo sapiens}
Probab=27.04 E-value=48 Score=21.45 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=20.4
Q ss_pred CCCCcceEEEEEee-ccccccCCCceeE
Q psy4529 67 RHIPGVVEVTLSYK-SKQFCKGAPGRFV 93 (123)
Q Consensus 67 rh~PGvVeVTLsyK-sKqfckg~PgrF~ 93 (123)
..+|||.+||+-.. +.-|...+|-.|.
T Consensus 14 k~v~gI~rVtirK~~~~lf~i~~PdV~k 41 (61)
T 3mce_A 14 RQVTGVTRVTIRKSKNILFVITKPDVYK 41 (61)
T ss_dssp EECSSEEEEEEEETTTEEEEESSCEEEE
T ss_pred eECCCEEEEEEEecCCEEEEECCCcEEE
Confidence 46899999998663 3456778887775
No 27
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=26.98 E-value=9.5 Score=30.58 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=22.5
Q ss_pred ceeEEeecCCCcchhhhhhhhhhc
Q psy4529 90 GRFVYVSLNEPTIDYGFQRLQKLI 113 (123)
Q Consensus 90 grF~Yt~l~EPtIdygFqRLqKli 113 (123)
||+.+.++|+-.|||.-++|.+++
T Consensus 391 gRis~Agl~~~ni~~~a~aI~~vv 414 (420)
T 4h51_A 391 GRANMAGLTHETALMLAQTINDAV 414 (420)
T ss_dssp CEEEGGGCCHHHHHHHHHHHHHHH
T ss_pred CEEEeccCCHHHHHHHHHHHHHHH
Confidence 699999999999999999999987
No 28
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=25.16 E-value=28 Score=24.43 Aligned_cols=24 Identities=21% Similarity=0.620 Sum_probs=19.1
Q ss_pred ecCCCc-----chhhhhhhhhhcCCCCCC
Q psy4529 96 SLNEPT-----IDYGFQRLQKLIPRHPGL 119 (123)
Q Consensus 96 ~l~EPt-----IdygFqRLqKliPRhPGD 119 (123)
...|+. +.-||.+|.++||-.|.|
T Consensus 29 ~~~~~r~Rm~~lN~AF~~LR~~vP~~p~~ 57 (97)
T 4aya_A 29 PVDDPMSLLYNMNDCYSKLKELVPSIPQN 57 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHCTTSCSS
T ss_pred ccccHHHHHHHHHHHHHHHHHHCCCCCCC
Confidence 366775 899999999999998865
No 29
>1my7_A NF-kappab P65 (RELA) subunit; immunoglobulin, IG, beta-sandwich, beta-sheet, homodimerdna- binding, transcription regulation, activator; 1.49A {Mus musculus} SCOP: b.1.18.1 PDB: 1my5_A 1bft_A
Probab=24.22 E-value=1.1e+02 Score=21.77 Aligned_cols=64 Identities=20% Similarity=0.250 Sum_probs=43.6
Q ss_pred CCCCCCCeEEEec-----------cCCccccc--------cccccccccccCCCCC---CCcceEEEEEee--ccccccC
Q psy4529 32 SPTSTPNSHFINA-----------NTSGWNHC--------TLITSHAIRVQTPPRH---IPGVVEVTLSYK--SKQFCKG 87 (123)
Q Consensus 32 sp~e~g~s~iiig-----------~~t~~vws--------ELItpHAiRVqTPPrh---~PGvVeVTLsyK--sKqfckg 87 (123)
.|-.||.-+|++| |.-. +|. +++-..||-+.|||=+ +.-.|+|.+.-+ |+. ..+
T Consensus 14 g~v~GG~Ev~LLc~kv~K~Di~VrF~e~-~WE~~g~f~~~Dvh~Q~aIvfktPpY~~~~I~~pV~V~i~L~r~sd~-~~S 91 (114)
T 1my7_A 14 GSCLGGDEIFLLCDKVQKEDIEVYFTGP-GWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDR-ELS 91 (114)
T ss_dssp EETTCCCEEEEEESCCCTTSCEEEEEET-TEEEECBCCGGGBCTTSEEEEECCCCSCTTCCSCEEEEEEEEETTTT-EEC
T ss_pred eecCCCcEEEEEecccccCCCEEEEEcc-CeEEecccChhhcccceeEEEECCCCCCCccCCCEEEEEEEEeCCCC-CcC
Confidence 3445777788888 3222 565 3677889999999965 445566655543 555 448
Q ss_pred CCceeEEeec
Q psy4529 88 APGRFVYVSL 97 (123)
Q Consensus 88 ~PgrF~Yt~l 97 (123)
.|-.|.|+-.
T Consensus 92 ep~~FtY~P~ 101 (114)
T 1my7_A 92 EPMEFQYLPD 101 (114)
T ss_dssp CCEEEEEECC
T ss_pred CCcccEEecC
Confidence 9999999974
No 30
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=23.54 E-value=21 Score=26.78 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=20.7
Q ss_pred ceeEEeecCCCcchhhhhhhhhhc
Q psy4529 90 GRFVYVSLNEPTIDYGFQRLQKLI 113 (123)
Q Consensus 90 grF~Yt~l~EPtIdygFqRLqKli 113 (123)
||+.+..+++..||.+.+||.+++
T Consensus 396 ~Ris~~~~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 396 GRICVAALNTRNLDVVANAIAAVL 419 (420)
T ss_dssp SEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred CeEEEecCCHHHHHHHHHHHHHHh
Confidence 699887778888999999998875
No 31
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=23.24 E-value=43 Score=22.16 Aligned_cols=39 Identities=23% Similarity=0.213 Sum_probs=24.6
Q ss_pred cccccCCCceeEEee-cCCCcchhhhhhhhhhcCCCCCCC
Q psy4529 82 KQFCKGAPGRFVYVS-LNEPTIDYGFQRLQKLIPRHPGLY 120 (123)
Q Consensus 82 Kqfckg~PgrF~Yt~-l~EPtIdygFqRLqKliPRhPGDP 120 (123)
++|++...-.|..++ .+.-.|+-.|+.|.+.+++.+.++
T Consensus 152 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~ 191 (192)
T 2fg5_A 152 KEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHE 191 (192)
T ss_dssp HHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC------
T ss_pred HHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHhhCCCC
Confidence 445554334566666 777899999999999998877654
No 32
>1zk9_A Transcription factor RELB; NF-KB, transcription factors, intertwined dimer; 2.18A {Mus musculus} PDB: 1zka_A 3jv6_A 3jv4_A 3jss_A 3juz_A 3jv0_A
Probab=22.52 E-value=1.1e+02 Score=21.61 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=42.0
Q ss_pred CCCCCCCeEEEec-----------cCCccccc--------cccccccccccCCCCC---CCcceEEEEEee--ccccccC
Q psy4529 32 SPTSTPNSHFINA-----------NTSGWNHC--------TLITSHAIRVQTPPRH---IPGVVEVTLSYK--SKQFCKG 87 (123)
Q Consensus 32 sp~e~g~s~iiig-----------~~t~~vws--------ELItpHAiRVqTPPrh---~PGvVeVTLsyK--sKqfckg 87 (123)
.|-.||.-+|++| |.- -+|. +++-..||-+.|||=+ +--.|+|.+.-+ ++.- .+
T Consensus 23 g~v~GG~Ev~LLc~kv~K~Di~V~F~e-~~WE~~~~f~~~Dvh~Q~aIvf~tPpY~~~~I~~pV~V~i~L~r~sd~~-~S 100 (110)
T 1zk9_A 23 GPCTGGEELYLLCDKVQKEDISVVFST-ASWEGRADFSQADVHRQIAIVFKTPPYEDLEISEPVTVNVFLQRLTDGV-CS 100 (110)
T ss_dssp CCTTCCCCCCEEESCCCTTSCCCEEEE-TTEEEECCCCGGGCCCCCCCCCCCCCCSCTTCSSCEEEEECCBCTTTCC-BC
T ss_pred cccCCCCEEEEEecccccCCcEEEEec-hheeeccccCcccccccceEEEECCCCCCcccCCCeEEEEEEEeCCCCC-cc
Confidence 3444777788888 222 2564 3677799999999964 445566776655 4443 56
Q ss_pred CCceeEEe
Q psy4529 88 APGRFVYV 95 (123)
Q Consensus 88 ~PgrF~Yt 95 (123)
.|-.|.|+
T Consensus 101 ep~~FtY~ 108 (110)
T 1zk9_A 101 EPLPFTYL 108 (110)
T ss_dssp CCEEEEEC
T ss_pred CCcCcEEc
Confidence 88899986
No 33
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=22.44 E-value=36 Score=21.89 Aligned_cols=17 Identities=18% Similarity=0.520 Sum_probs=14.1
Q ss_pred chhhhhhhhhhcCCCCC
Q psy4529 102 IDYGFQRLQKLIPRHPG 118 (123)
Q Consensus 102 IdygFqRLqKliPRhPG 118 (123)
|.-||+.|.++||-.|+
T Consensus 27 iN~af~~LR~~iP~~~~ 43 (68)
T 1mdy_A 27 VNEAFETLKRSTSSNPN 43 (68)
T ss_dssp HHHHHHHHHTTSCSCTT
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 56699999999997664
No 34
>2lnz_A Ubiquitin-like protein MDY2; dimerization, homodimerization, protein binding; NMR {Saccharomyces cerevisiae}
Probab=21.92 E-value=25 Score=23.52 Aligned_cols=8 Identities=50% Similarity=0.538 Sum_probs=5.6
Q ss_pred hhhhhhhh
Q psy4529 104 YGFQRLQK 111 (123)
Q Consensus 104 ygFqRLqK 111 (123)
-.||||||
T Consensus 51 ~~LqRLQK 58 (64)
T 2lnz_A 51 QVMERLQK 58 (64)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 45778877
No 35
>1ikn_A P65, protein (NF-kappa-B P65 subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 1nfi_A 2ram_A* 1ram_A* 2i9t_A 1lei_A* 1le9_A 1le5_A* 1vkx_A* 3gut_A
Probab=21.84 E-value=1.7e+02 Score=23.71 Aligned_cols=70 Identities=20% Similarity=0.191 Sum_probs=45.8
Q ss_pred ceeeecCCCC----CCCeEEEec-----------cCCcccccc--------ccccccccccCCCCC---CCcceEEEEEe
Q psy4529 26 PVTRASSPTS----TPNSHFINA-----------NTSGWNHCT--------LITSHAIRVQTPPRH---IPGVVEVTLSY 79 (123)
Q Consensus 26 pci~aisp~e----~g~s~iiig-----------~~t~~vwsE--------LItpHAiRVqTPPrh---~PGvVeVTLsy 79 (123)
+-|--+|-++ ||.-+|++| |.-. +|.. ++-..||-+.|||=+ +--.|+|-+.-
T Consensus 176 L~I~r~s~~sg~v~GG~Ev~Llc~kv~K~di~V~F~e~-~WE~~~~f~~~dvh~Q~aIvf~tPpY~~~~I~~pV~V~i~L 254 (286)
T 1ikn_A 176 LKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGP-GWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQL 254 (286)
T ss_dssp CCEEEESCSEEETTCCCEEEEEESCCCTTSCEEEEEET-TEEEECBCCGGGBCTTSEEEEECCCCSCTTCSSCEEEEEEE
T ss_pred CeEEEecCCccccCCCCEEEEEecccccCCCEEEEecc-ceEEeeecCHHHhccceeEEEECCCCCCCCcCCCEEEEEEE
Confidence 3444444333 777778888 2222 5753 566789999999955 45556666655
Q ss_pred e--ccccccCCCceeEEeec
Q psy4529 80 K--SKQFCKGAPGRFVYVSL 97 (123)
Q Consensus 80 K--sKqfckg~PgrF~Yt~l 97 (123)
+ ++ -..+.|-.|.|+-.
T Consensus 255 ~r~sd-~~~Sep~~FtY~P~ 273 (286)
T 1ikn_A 255 RRPSD-RELSEPMEFQYLPD 273 (286)
T ss_dssp ECTTT-CCBCCCEEEEEECC
T ss_pred EeCCC-CCcCCCcCcEEecC
Confidence 4 44 44579999999874
No 36
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=20.30 E-value=36 Score=22.86 Aligned_cols=11 Identities=27% Similarity=0.869 Sum_probs=9.4
Q ss_pred CceeEEeecCC
Q psy4529 89 PGRFVYVSLNE 99 (123)
Q Consensus 89 PgrF~Yt~l~E 99 (123)
-|||.|++..|
T Consensus 58 RGKfIyIs~eE 68 (72)
T 1wi9_A 58 RGKFIYITPSG 68 (72)
T ss_dssp TCCEEECCCSS
T ss_pred CCCEEEecHHH
Confidence 48999999876
Done!