RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4529
         (123 letters)



>d1p7hl1 b.1.18.1 (L:576-678) T-cell transcription factor NFAT1
           (NFATC2) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 103

 Score = 39.1 bits (91), Expect = 1e-05
 Identities = 7/48 (14%), Positives = 16/48 (33%), Gaps = 3/48 (6%)

Query: 53  TLITSHAIRVQTPPRHIPGV---VEVTLSYKSKQFCKGAPGRFVYVSL 97
                + + V+ P      +   V+V     + +  +  P  F Y  +
Sbjct: 56  DKSQPNMLFVEIPEYRNKHIRTPVKVNFYVINGKRKRSQPQHFTYHPV 103


>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase
           (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}
          Length = 431

 Score = 26.5 bits (57), Expect = 1.1
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 84  FCKGAPG--RFVYVSLNEPTIDYGFQRLQKLIPRH 116
                PG  R  + +L E T+D   QRL+  +  +
Sbjct: 396 CHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGEY 430


>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase
           (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId:
           4081]}
          Length = 428

 Score = 26.1 bits (56), Expect = 1.3
 Identities = 7/32 (21%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 84  FCKGAPG--RFVYVSLNEPTIDYGFQRLQKLI 113
           F    PG  R  + ++++ T+D    R+++ +
Sbjct: 393 FECQEPGWFRVCFANMDDGTVDIALARIRRFV 424


>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase
           RumA, catalytic domain {Escherichia coli [TaxId: 562]}
          Length = 358

 Score = 24.2 bits (51), Expect = 5.5
 Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 7/34 (20%)

Query: 65  PPRHIPGVVEVTLSYKSKQFCKGAPGRFVYVSLN 98
           P R   G   V      +Q  K  P R VYVS N
Sbjct: 290 PAR--AGAAGVM-----QQIIKLEPIRIVYVSCN 316


>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase,
           MSAT {Thermococcus profundus [TaxId: 49899]}
          Length = 403

 Score = 24.2 bits (51), Expect = 5.8
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 91  RFVYVSLNEPTIDYGFQRLQKLIPRH 116
           R  +  + E TI  G +RL + I   
Sbjct: 374 RLNFTYVPEETIREGVRRLAETIKEE 399


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.417 

Gapped
Lambda     K      H
   0.267   0.0413    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 475,311
Number of extensions: 19036
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 8
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)