Query psy4531
Match_columns 88
No_of_seqs 100 out of 190
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 19:33:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4531.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4531hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3088|consensus 100.0 2.2E-40 4.8E-45 254.3 6.6 86 3-88 140-225 (313)
2 PF04144 SCAMP: SCAMP family; 100.0 2.8E-33 6.1E-38 200.7 6.5 86 3-88 43-128 (177)
3 COG4818 Predicted membrane pro 71.5 3.3 7.2E-05 28.1 2.0 17 42-58 70-86 (105)
4 PF05915 DUF872: Eukaryotic pr 32.2 81 0.0017 21.3 3.6 39 22-62 71-109 (115)
5 PF13086 AAA_11: AAA domain; P 29.5 24 0.00051 23.9 0.6 7 81-87 23-29 (236)
6 PF07787 DUF1625: Protein of u 29.1 71 0.0015 23.6 3.1 6 44-49 243-248 (248)
7 PF10716 NdhL: NADH dehydrogen 28.5 77 0.0017 20.6 2.8 42 26-68 20-62 (81)
8 PF14991 MLANA: Protein melan- 27.1 9.9 0.00022 26.4 -1.6 33 26-58 25-60 (118)
9 smart00459 Sorb Sorbin homolog 23.5 35 0.00077 20.3 0.5 11 46-56 31-41 (50)
10 PF13308 YARHG: YARHG domain 22.2 28 0.0006 21.8 -0.1 10 42-51 51-60 (81)
No 1
>KOG3088|consensus
Probab=100.00 E-value=2.2e-40 Score=254.32 Aligned_cols=86 Identities=42% Similarity=0.753 Sum_probs=83.9
Q ss_pred eeehHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhcchhhhhhhhhhhhhhhcCcchhHHHHHHHHHHHHHhhhhhhcc
Q psy4531 3 IHAGLMLVNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFMVFFFIFIFQFIVSLIQAIG 82 (88)
Q Consensus 3 ~~~~~L~~N~~~~l~~~~~~~~~~~fglsily~ll~~P~Sf~~WYRplY~A~r~dssf~f~~FF~~~~~h~~~~v~~aiG 82 (88)
+|++||++|+++|+++|++|+++.+|||||+|+++|+||||+|||||+|||||+||||||++|||+|++|+++||+||||
T Consensus 140 ~~~~tL~~Niia~la~~i~g~~~~~f~Laii~fllftPcsyVcWyRPlYkAFRsDSSf~F~~FFF~y~~q~~~~v~qAvg 219 (313)
T KOG3088|consen 140 GLVLTLLWNIIACLAWWIKGGGGTIFGLAIIWFLLFTPCSYVCWYRPLYKAFRTDSSFNFGAFFFTYFFQIVFCVFQAVG 219 (313)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhCCceeeEeehHHHHHhccccchhhHHHHHHHHHHHHHHHHHHHc
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy4531 83 TQGSGT 88 (88)
Q Consensus 83 ip~~G~ 88 (88)
+||||.
T Consensus 220 f~g~~~ 225 (313)
T KOG3088|consen 220 FPGWGL 225 (313)
T ss_pred cCCcch
Confidence 999983
No 2
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=99.98 E-value=2.8e-33 Score=200.70 Aligned_cols=86 Identities=43% Similarity=0.794 Sum_probs=82.0
Q ss_pred eeehHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhcchhhhhhhhhhhhhhhcCcchhHHHHHHHHHHHHHhhhhhhcc
Q psy4531 3 IHAGLMLVNILGSLLLMMHSGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNFMVFFFIFIFQFIVSLIQAIG 82 (88)
Q Consensus 3 ~~~~~L~~N~~~~l~~~~~~~~~~~fglsily~ll~~P~Sf~~WYRplY~A~r~dssf~f~~FF~~~~~h~~~~v~~aiG 82 (88)
++++||++|+++|++.+..+++++++++|++|+++++|+||+|||||+|||+|+|||+||++||+++++|++++++|+||
T Consensus 43 ~~~~~l~~N~i~~~~~~~~~~~~~~~~lai~y~~~~~P~sf~~wyrplY~A~r~dss~~f~~ff~~~~~~i~f~i~~aIG 122 (177)
T PF04144_consen 43 FLAITLFWNFIACLALLIAGGSGSDFGLAILYLLLGTPASFFCWYRPLYKAFRTDSSFRFMWFFFFFFVHIIFCIIMAIG 122 (177)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHhHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 35789999999999999766669999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy4531 83 TQGSGT 88 (88)
Q Consensus 83 ip~~G~ 88 (88)
+|++|+
T Consensus 123 ~p~~G~ 128 (177)
T PF04144_consen 123 IPGWGS 128 (177)
T ss_pred cccccH
Confidence 999984
No 3
>COG4818 Predicted membrane protein [Function unknown]
Probab=71.51 E-value=3.3 Score=28.09 Aligned_cols=17 Identities=29% Similarity=0.860 Sum_probs=15.7
Q ss_pred hhhhhhhhhhhhhhcCc
Q psy4531 42 SFVCWFRPAYKAFKDDS 58 (88)
Q Consensus 42 Sf~~WYRplY~A~r~ds 58 (88)
++++|=-+.|||+|.|.
T Consensus 70 a~iLwlv~mykAyrGe~ 86 (105)
T COG4818 70 AFILWLVCMYKAYRGER 86 (105)
T ss_pred HHHHHHHHHHHHHcCCe
Confidence 89999999999999874
No 4
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=32.18 E-value=81 Score=21.33 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=28.9
Q ss_pred cCchhHHHHHHHHHHhhcchhhhhhhhhhhhhhhcCcchhH
Q psy4531 22 SGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSSFNF 62 (88)
Q Consensus 22 ~~~~~~fglsily~ll~~P~Sf~~WYRplY~A~r~dssf~f 62 (88)
++....+.+-++=.++++|+.|-+ |-+|.|.|.-.-+.|
T Consensus 71 ~~~~~~~~llilG~L~fIPG~Y~~--~i~y~a~rg~~Gysf 109 (115)
T PF05915_consen 71 GDRDRGWALLILGILCFIPGFYHT--RIAYYAWRGYKGYSF 109 (115)
T ss_pred CCCcccchHHHHHHHHHhccHHHH--HHHHHHHcCCCCCCH
Confidence 445667778888889999999875 577888877655444
No 5
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=29.47 E-value=24 Score=23.95 Aligned_cols=7 Identities=43% Similarity=0.919 Sum_probs=5.2
Q ss_pred cccCCCC
Q psy4531 81 IGTQGSG 87 (88)
Q Consensus 81 iGip~~G 87 (88)
-||||+|
T Consensus 23 ~GpPGTG 29 (236)
T PF13086_consen 23 QGPPGTG 29 (236)
T ss_dssp E-STTSS
T ss_pred ECCCCCC
Confidence 5999998
No 6
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=29.08 E-value=71 Score=23.61 Aligned_cols=6 Identities=33% Similarity=0.938 Sum_probs=4.6
Q ss_pred hhhhhh
Q psy4531 44 VCWFRP 49 (88)
Q Consensus 44 ~~WYRp 49 (88)
++||||
T Consensus 243 W~~yRP 248 (248)
T PF07787_consen 243 WLFYRP 248 (248)
T ss_pred heeeCc
Confidence 678887
No 7
>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=28.49 E-value=77 Score=20.63 Aligned_cols=42 Identities=17% Similarity=0.418 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHhhcchhhhhhh-hhhhhhhhcCcchhHHHHHHH
Q psy4531 26 ERVFLAVFFTFLLTPFSFVCWF-RPAYKAFKDDSSFNFMVFFFI 68 (88)
Q Consensus 26 ~~fglsily~ll~~P~Sf~~WY-RplY~A~r~dssf~f~~FF~~ 68 (88)
.--+++.+|++. +|..-..|= ++.|++-+=|.-+-|+.=|++
T Consensus 20 ~y~~l~~~YLlV-vP~~l~~wm~~RWy~~~~~Er~~~y~lvF~F 62 (81)
T PF10716_consen 20 AYAALAGLYLLV-VPLILYFWMNKRWYVMSSFERLFMYFLVFLF 62 (81)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678889555 555555554 567777777766555443333
No 8
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=27.11 E-value=9.9 Score=26.35 Aligned_cols=33 Identities=27% Similarity=0.634 Sum_probs=2.1
Q ss_pred hHHHHHHHHHHhhcchhhhhhh---hhhhhhhhcCc
Q psy4531 26 ERVFLAVFFTFLLTPFSFVCWF---RPAYKAFKDDS 58 (88)
Q Consensus 26 ~~fglsily~ll~~P~Sf~~WY---RplY~A~r~ds 58 (88)
...|..|+-++|++-+-+=||| |.=||..|+.+
T Consensus 25 EAaGIGiL~VILgiLLliGCWYckRRSGYk~L~~k~ 60 (118)
T PF14991_consen 25 EAAGIGILIVILGILLLIGCWYCKRRSGYKTLRDKS 60 (118)
T ss_dssp ---SSS------------------------------
T ss_pred HhccceeHHHHHHHHHHHhheeeeecchhhhhhhcc
Confidence 3456677778888888889999 66788877644
No 9
>smart00459 Sorb Sorbin homologous domain. First found in the peptide hormone sorbin and later in the ponsin/ArgBP2/vinexin family of proteins.
Probab=23.48 E-value=35 Score=20.33 Aligned_cols=11 Identities=27% Similarity=0.993 Sum_probs=8.9
Q ss_pred hhhhhhhhhhc
Q psy4531 46 WFRPAYKAFKD 56 (88)
Q Consensus 46 WYRplY~A~r~ 56 (88)
|||..||-.-+
T Consensus 31 WYk~MfkqiHk 41 (50)
T smart00459 31 WYRTMFKQIHR 41 (50)
T ss_pred HHHHHHHHHHc
Confidence 99999987644
No 10
>PF13308 YARHG: YARHG domain
Probab=22.18 E-value=28 Score=21.80 Aligned_cols=10 Identities=40% Similarity=1.172 Sum_probs=8.0
Q ss_pred hhhhhhhhhh
Q psy4531 42 SFVCWFRPAY 51 (88)
Q Consensus 42 Sf~~WYRplY 51 (88)
+--+||+|.+
T Consensus 51 ~~~~WY~~~~ 60 (81)
T PF13308_consen 51 SSKSWYKPEY 60 (81)
T ss_pred cCCCccCCCc
Confidence 3468999998
Done!