Query psy4531
Match_columns 88
No_of_seqs 100 out of 190
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 19:33:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4531.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4531hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b3f_X DNA-binding protein smu 11.0 70 0.0024 25.3 0.7 8 80-87 210-217 (646)
2 3brc_A Conserved protein of un 8.9 85 0.0029 21.7 0.4 8 81-88 103-110 (156)
3 3umf_A Adenylate kinase; rossm 8.6 72 0.0025 22.1 -0.1 10 78-87 32-41 (217)
4 4b4t_M 26S protease regulatory 8.4 99 0.0034 23.9 0.6 8 80-87 220-227 (434)
5 4b4t_K 26S protease regulatory 7.8 1.1E+02 0.0038 23.6 0.7 8 80-87 211-218 (428)
6 4b4t_L 26S protease subunit RP 7.3 1.2E+02 0.0041 23.5 0.6 7 81-87 221-227 (437)
7 4b4t_J 26S protease regulatory 7.3 1.2E+02 0.004 23.5 0.6 7 81-87 188-194 (405)
8 4f9c_B Protein DBF4 homolog A; 6.8 55 0.0019 21.9 -1.3 11 47-57 23-33 (144)
9 2dco_A S1P4 first extracellula 6.7 99 0.0034 16.1 -0.1 8 51-58 3-10 (34)
10 3t15_A Ribulose bisphosphate c 6.7 1.4E+02 0.0047 21.0 0.6 7 81-87 42-48 (293)
No 1
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=11.03 E-value=70 Score=25.26 Aligned_cols=8 Identities=38% Similarity=0.758 Sum_probs=6.5
Q ss_pred hcccCCCC
Q psy4531 80 AIGTQGSG 87 (88)
Q Consensus 80 aiGip~~G 87 (88)
.-||||+|
T Consensus 210 I~GPPGTG 217 (646)
T 4b3f_X 210 IHGPPGTG 217 (646)
T ss_dssp EECCTTSC
T ss_pred EECCCCCC
Confidence 34999998
No 2
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=8.93 E-value=85 Score=21.73 Aligned_cols=8 Identities=50% Similarity=1.086 Sum_probs=4.8
Q ss_pred cccCCCCC
Q psy4531 81 IGTQGSGT 88 (88)
Q Consensus 81 iGip~~G~ 88 (88)
.|+||.|+
T Consensus 103 LGvPGSGS 110 (156)
T 3brc_A 103 LGVPGSGS 110 (156)
T ss_dssp CSSTTSCE
T ss_pred ccCCCCcc
Confidence 46666664
No 3
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=8.62 E-value=72 Score=22.11 Aligned_cols=10 Identities=50% Similarity=0.833 Sum_probs=7.6
Q ss_pred hhhcccCCCC
Q psy4531 78 IQAIGTQGSG 87 (88)
Q Consensus 78 ~~aiGip~~G 87 (88)
+-.+|+||.|
T Consensus 32 I~llGpPGsG 41 (217)
T 3umf_A 32 IFVLGGPGSG 41 (217)
T ss_dssp EEEECCTTCC
T ss_pred EEEECCCCCC
Confidence 3457999987
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=8.44 E-value=99 Score=23.94 Aligned_cols=8 Identities=38% Similarity=0.825 Sum_probs=5.4
Q ss_pred hcccCCCC
Q psy4531 80 AIGTQGSG 87 (88)
Q Consensus 80 aiGip~~G 87 (88)
..||||+|
T Consensus 220 LyGPPGTG 227 (434)
T 4b4t_M 220 MYGPPGTG 227 (434)
T ss_dssp EESCTTSS
T ss_pred EECcCCCC
Confidence 34777777
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=7.77 E-value=1.1e+02 Score=23.58 Aligned_cols=8 Identities=38% Similarity=0.804 Sum_probs=5.8
Q ss_pred hcccCCCC
Q psy4531 80 AIGTQGSG 87 (88)
Q Consensus 80 aiGip~~G 87 (88)
..||||+|
T Consensus 211 L~GPPGtG 218 (428)
T 4b4t_K 211 LYGPPGTG 218 (428)
T ss_dssp EESCTTTT
T ss_pred EECCCCCC
Confidence 45888877
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=7.29 E-value=1.2e+02 Score=23.49 Aligned_cols=7 Identities=43% Similarity=0.975 Sum_probs=5.0
Q ss_pred cccCCCC
Q psy4531 81 IGTQGSG 87 (88)
Q Consensus 81 iGip~~G 87 (88)
.||||+|
T Consensus 221 ~GPPGtG 227 (437)
T 4b4t_L 221 YGPPGTG 227 (437)
T ss_dssp ESCTTSS
T ss_pred ECCCCCc
Confidence 4777777
No 7
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=7.25 E-value=1.2e+02 Score=23.46 Aligned_cols=7 Identities=43% Similarity=0.975 Sum_probs=4.9
Q ss_pred cccCCCC
Q psy4531 81 IGTQGSG 87 (88)
Q Consensus 81 iGip~~G 87 (88)
.||||+|
T Consensus 188 ~GPPGTG 194 (405)
T 4b4t_J 188 YGPPGTG 194 (405)
T ss_dssp ESCSSSS
T ss_pred eCCCCCC
Confidence 4777776
No 8
>4f9c_B Protein DBF4 homolog A; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_B* 4f9b_B* 4f9a_B*
Probab=6.85 E-value=55 Score=21.85 Aligned_cols=11 Identities=27% Similarity=0.664 Sum_probs=8.0
Q ss_pred hhhhhhhhhcC
Q psy4531 47 FRPAYKAFKDD 57 (88)
Q Consensus 47 YRplY~A~r~d 57 (88)
|||+|+-+++-
T Consensus 23 yRP~y~e~~~~ 33 (144)
T 4f9c_B 23 YRPFYLQLTNM 33 (144)
T ss_dssp -CCEEEECSSC
T ss_pred cCCCeeccCcC
Confidence 79999888753
No 9
>2dco_A S1P4 first extracellular loop peptidomimetic; coiled coil, disulfide, helix-turn-helix, 3-10 helix, membrane protein; NMR {Homo sapiens}
Probab=6.74 E-value=99 Score=16.07 Aligned_cols=8 Identities=38% Similarity=0.970 Sum_probs=5.7
Q ss_pred hhhhhcCc
Q psy4531 51 YKAFKDDS 58 (88)
Q Consensus 51 Y~A~r~ds 58 (88)
|.|+|+|-
T Consensus 3 ydayrtdc 10 (34)
T 2dco_A 3 YDAYRTDC 10 (34)
T ss_dssp GGGTHHHH
T ss_pred cchhhcch
Confidence 67788773
No 10
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=6.68 E-value=1.4e+02 Score=20.97 Aligned_cols=7 Identities=43% Similarity=0.885 Sum_probs=5.9
Q ss_pred cccCCCC
Q psy4531 81 IGTQGSG 87 (88)
Q Consensus 81 iGip~~G 87 (88)
.|+||+|
T Consensus 42 ~GppGtG 48 (293)
T 3t15_A 42 WGGKGQG 48 (293)
T ss_dssp EECTTSC
T ss_pred ECCCCCC
Confidence 4999988
Done!