Query psy4531
Match_columns 88
No_of_seqs 100 out of 190
Neff 5.1
Searched_HMMs 13730
Date Fri Aug 16 19:33:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4531.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4531hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w5sa2 c.37.1.20 (A:7-293) CD 19.9 10 0.00076 23.6 -0.0 10 78-87 49-58 (287)
2 d1gvnb_ c.37.1.21 (B:) Plasmid 19.2 15 0.0011 22.9 0.7 10 78-87 35-44 (273)
3 d1in4a2 c.37.1.20 (A:17-254) H 19.2 15 0.0011 22.9 0.7 8 80-87 40-47 (238)
4 d1ixsb2 c.37.1.20 (B:4-242) Ho 15.8 20 0.0015 22.3 0.7 8 80-87 40-47 (239)
5 d1sxja2 c.37.1.20 (A:295-547) 12.5 28 0.002 21.6 0.7 10 78-87 55-64 (253)
6 d1ofha_ c.37.1.20 (A:) HslU {H 12.4 28 0.002 23.3 0.6 8 80-87 54-61 (309)
7 d1fnna2 c.37.1.20 (A:1-276) CD 10.0 38 0.0028 20.5 0.6 9 79-87 47-55 (276)
8 d1e32a2 c.37.1.20 (A:201-458) 9.4 41 0.003 21.7 0.6 8 80-87 43-50 (258)
9 d1iqpa2 c.37.1.20 (A:2-232) Re 9.4 42 0.003 20.6 0.6 9 79-87 49-57 (231)
10 d1lv7a_ c.37.1.20 (A:) AAA dom 8.4 49 0.0036 21.7 0.7 10 78-87 48-57 (256)
No 1
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}
Probab=19.87 E-value=10 Score=23.55 Aligned_cols=10 Identities=40% Similarity=0.657 Sum_probs=7.6
Q ss_pred hhhcccCCCC
Q psy4531 78 IQAIGTQGSG 87 (88)
Q Consensus 78 ~~aiGip~~G 87 (88)
+...|+||+|
T Consensus 49 l~l~GppGtG 58 (287)
T d1w5sa2 49 YGSIGRVGIG 58 (287)
T ss_dssp EECTTCCSSS
T ss_pred EEeECCCCCC
Confidence 3446999998
No 2
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}
Probab=19.23 E-value=15 Score=22.89 Aligned_cols=10 Identities=40% Similarity=0.518 Sum_probs=7.7
Q ss_pred hhhcccCCCC
Q psy4531 78 IQAIGTQGSG 87 (88)
Q Consensus 78 ~~aiGip~~G 87 (88)
+...||||+|
T Consensus 35 ilL~GpPGtG 44 (273)
T d1gvnb_ 35 FLLGGQPGSG 44 (273)
T ss_dssp EEEECCTTSC
T ss_pred EEEECCCCCC
Confidence 3356999998
No 3
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}
Probab=19.17 E-value=15 Score=22.94 Aligned_cols=8 Identities=38% Similarity=0.650 Sum_probs=6.9
Q ss_pred hcccCCCC
Q psy4531 80 AIGTQGSG 87 (88)
Q Consensus 80 aiGip~~G 87 (88)
..||||+|
T Consensus 40 ~~GPpGtG 47 (238)
T d1in4a2 40 LAGPPGLG 47 (238)
T ss_dssp EESSTTSS
T ss_pred EECCCCCc
Confidence 56999998
No 4
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}
Probab=15.78 E-value=20 Score=22.31 Aligned_cols=8 Identities=38% Similarity=0.725 Sum_probs=7.0
Q ss_pred hcccCCCC
Q psy4531 80 AIGTQGSG 87 (88)
Q Consensus 80 aiGip~~G 87 (88)
..||||+|
T Consensus 40 l~GPpG~G 47 (239)
T d1ixsb2 40 LFGPPGLG 47 (239)
T ss_dssp EECCTTSC
T ss_pred EECCCCCC
Confidence 57999998
No 5
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.51 E-value=28 Score=21.56 Aligned_cols=10 Identities=30% Similarity=0.474 Sum_probs=7.5
Q ss_pred hhhcccCCCC
Q psy4531 78 IQAIGTQGSG 87 (88)
Q Consensus 78 ~~aiGip~~G 87 (88)
+...||||+|
T Consensus 55 lll~GPpG~G 64 (253)
T d1sxja2 55 AMLYGPPGIG 64 (253)
T ss_dssp EEEECSTTSS
T ss_pred EEEECCCCCC
Confidence 3456999988
No 6
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=12.43 E-value=28 Score=23.32 Aligned_cols=8 Identities=50% Similarity=0.925 Sum_probs=6.7
Q ss_pred hcccCCCC
Q psy4531 80 AIGTQGSG 87 (88)
Q Consensus 80 aiGip~~G 87 (88)
..||||+|
T Consensus 54 l~GPpG~G 61 (309)
T d1ofha_ 54 MIGPTGVG 61 (309)
T ss_dssp EECCTTSS
T ss_pred EECCCCCC
Confidence 56999998
No 7
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=10.02 E-value=38 Score=20.55 Aligned_cols=9 Identities=33% Similarity=0.833 Sum_probs=6.9
Q ss_pred hhcccCCCC
Q psy4531 79 QAIGTQGSG 87 (88)
Q Consensus 79 ~aiGip~~G 87 (88)
-..|+||+|
T Consensus 47 ll~GppGtG 55 (276)
T d1fnna2 47 TLLGRPGTG 55 (276)
T ss_dssp EEECCTTSS
T ss_pred EEECCCCCC
Confidence 356999988
No 8
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.44 E-value=41 Score=21.74 Aligned_cols=8 Identities=38% Similarity=0.804 Sum_probs=6.3
Q ss_pred hcccCCCC
Q psy4531 80 AIGTQGSG 87 (88)
Q Consensus 80 aiGip~~G 87 (88)
..||||+|
T Consensus 43 L~GppGtG 50 (258)
T d1e32a2 43 LYGPPGTG 50 (258)
T ss_dssp EECCTTSS
T ss_pred EecCCCCC
Confidence 45899988
No 9
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=9.37 E-value=42 Score=20.60 Aligned_cols=9 Identities=33% Similarity=0.519 Sum_probs=7.3
Q ss_pred hhcccCCCC
Q psy4531 79 QAIGTQGSG 87 (88)
Q Consensus 79 ~aiGip~~G 87 (88)
..-||||+|
T Consensus 49 ll~Gp~G~G 57 (231)
T d1iqpa2 49 LFAGPPGVG 57 (231)
T ss_dssp EEESCTTSS
T ss_pred EEECCCCCc
Confidence 467999998
No 10
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}
Probab=8.37 E-value=49 Score=21.68 Aligned_cols=10 Identities=30% Similarity=0.836 Sum_probs=7.6
Q ss_pred hhhcccCCCC
Q psy4531 78 IQAIGTQGSG 87 (88)
Q Consensus 78 ~~aiGip~~G 87 (88)
+...||||+|
T Consensus 48 iLL~GppGtG 57 (256)
T d1lv7a_ 48 VLMVGPPGTG 57 (256)
T ss_dssp EEEECCTTSC
T ss_pred EEeeCCCCCC
Confidence 3467999998
Done!