RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4531
         (88 letters)



>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
           cyclic peptide, membrane protein; 3.80A {Mus musculus}
           PDB: 3g61_A* 3g60_A*
          Length = 1284

 Score = 26.5 bits (59), Expect = 1.3
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 7/80 (8%)

Query: 7   LMLVNILGSLL------LMMH-SGEIERVFLAVFFTFLLTPFSFVCWFRPAYKAFKDDSS 59
            MLV  L +++      LMM   G++   F +V      +        R  +   +++ +
Sbjct: 49  YMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMT 108

Query: 60  FNFMVFFFIFIFQFIVSLIQ 79
                +  I     IV+ IQ
Sbjct: 109 TYAYYYTGIGAGVLIVAYIQ 128


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.341    0.150    0.469 

Gapped
Lambda     K      H
   0.267   0.0537    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,299,080
Number of extensions: 62885
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 9
Length of query: 88
Length of database: 6,701,793
Length adjustment: 56
Effective length of query: 32
Effective length of database: 5,138,217
Effective search space: 164422944
Effective search space used: 164422944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 51 (23.9 bits)