BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4533
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CP6|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Clip- 170RESTIN
Length = 172
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 81/120 (67%), Gaps = 15/120 (12%)
Query: 246 LPTLSE-DEIRLGDRVIIRNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELD 304
+ LSE I+ G+R E+++GDRV++ G+K+GV+++ G+T FA GEWCGVELD
Sbjct: 23 ISNLSEAGSIKKGER-----ELKIGDRVLV---GGTKAGVVRFLGETDFAKGEWCGVELD 74
Query: 305 DPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSK------SPVQASGHASKNCVVHPSKDI 358
+PLGKNDG+V G RYF C+P++G+FAPV KV+K +P +A +A + + S +
Sbjct: 75 EPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPSTTPAKAKANAVRRVMATTSASL 134
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTR 37
+ LDEP GKNDG V G RYFQC PK+G+F+ ++++T+
Sbjct: 71 VELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTK 107
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 131 IGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
IGDRV VGGT G + ++GET F G+W G LDEP
Sbjct: 41 IGDRVLVGGTKAGVVRFLGETDFAKGEWCGV-ELDEP 76
>pdb|2E3H|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 2
Length = 90
Score = 105 bits (261), Expect = 6e-23, Method: Composition-based stats.
Identities = 47/90 (52%), Positives = 69/90 (76%), Gaps = 9/90 (10%)
Query: 265 EIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEP 324
E+++GDRV++ G+K+GV+++ G+T FA GEWCGVELD+PLGKNDG+V G RYF C+P
Sbjct: 1 ELKIGDRVLV---GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQP 57
Query: 325 RFGVFAPVSKVSK------SPVQASGHASK 348
++G+FAPV KV+K +P +A +A +
Sbjct: 58 KYGLFAPVHKVTKIGFPSTTPAKAKANAVR 87
Score = 54.7 bits (130), Expect = 8e-08, Method: Composition-based stats.
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTR 37
+ LDEP GKNDG V G RYFQC PK+G+F+ ++++T+
Sbjct: 34 VELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTK 70
Score = 44.7 bits (104), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/37 (56%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 131 IGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
IGDRV VGGT G + ++GET F G+W G LDEP
Sbjct: 4 IGDRVLVGGTKAGVVRFLGETDFAKGEWCGV-ELDEP 39
>pdb|2E4H|A Chain A, Solution Structure Of Cytoskeletal Protein In Complex With
Tubulin Tail
Length = 98
Score = 104 bits (259), Expect = 8e-23, Method: Composition-based stats.
Identities = 50/101 (49%), Positives = 74/101 (73%), Gaps = 14/101 (13%)
Query: 254 IRLGDRVIIRNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGS 313
I+ G+R E+++GDRV++ G+K+GV+++ G+T FA GEWCGVELD+PLGKNDG+
Sbjct: 3 IKKGER-----ELKIGDRVLV---GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGA 54
Query: 314 VDGVRYFYCEPRFGVFAPVSKVSK------SPVQASGHASK 348
V G RYF C+P++G+FAPV KV+K +P +A +A +
Sbjct: 55 VAGTRYFQCQPKYGLFAPVHKVTKIGFPSTTPAKAKANAVR 95
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTR 37
+ LDEP GKNDG V G RYFQC PK+G+F+ ++++T+
Sbjct: 42 VELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTK 78
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/37 (56%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 131 IGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
IGDRV VGGT G + ++GET F G+W G LDEP
Sbjct: 12 IGDRVLVGGTKAGVVRFLGETDFAKGEWCGV-ELDEP 47
>pdb|2CP3|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Clip- 115CYLN2
Length = 84
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/70 (64%), Positives = 58/70 (82%), Gaps = 3/70 (4%)
Query: 266 IRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPR 325
+RLGDRV++ G+K+GV++Y G+T FA GEWCGVELD+PLGKNDG+V G RYF C P+
Sbjct: 8 LRLGDRVLV---GGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPK 64
Query: 326 FGVFAPVSKV 335
FG+FAP+ KV
Sbjct: 65 FGLFAPIHKV 74
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 28/37 (75%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTR 37
+ LDEP GKNDG V G RYFQC PK G+F+ ++++ R
Sbjct: 40 VELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKVIR 76
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 131 IGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
+GDRV VGGT G + Y+GET F G+W G LDEP
Sbjct: 10 LGDRVLVGGTKTGVVRYVGETDFAKGEWCGVE-LDEP 45
>pdb|2CP0|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Clip- 170-Related Protein Clipr59
Length = 95
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 62/82 (75%), Gaps = 4/82 (4%)
Query: 266 IRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPR 325
+RLGDRV++ G K+G L++ G T FA G+W GVELD+P GKNDGSV GVRYF C P+
Sbjct: 17 LRLGDRVLL---DGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPK 73
Query: 326 FGVFAPVSKVSKSPVQASGHAS 347
G+FA VSK+SK+ V ASG +S
Sbjct: 74 QGLFASVSKISKA-VDASGPSS 94
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 31/38 (81%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRS 38
+ LDEP GKNDG+VGG RYF C PK G+F+ +++++++
Sbjct: 49 VELDEPEGKNDGSVGGVRYFICPPKQGLFASVSKISKA 86
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 123 MDSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPD 168
M S +GDRV + G G + + G T+F G W G LDEP+
Sbjct: 11 MLSALGLRLGDRVLLDGQKTGTLRFCGTTEFASGQWVGV-ELDEPE 55
>pdb|1WHJ|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse
1700024k14rik Hypothetical Protein
Length = 102
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 55/72 (76%), Gaps = 3/72 (4%)
Query: 266 IRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPR 325
++LGDRV+I G K G L++ G T FA G+W G+ELD+P GKN+GSV V+YF C P+
Sbjct: 25 LKLGDRVVI---AGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPK 81
Query: 326 FGVFAPVSKVSK 337
+G+FAP+SK+SK
Sbjct: 82 YGIFAPLSKISK 93
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 31/37 (83%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTR 37
I LDEP GKN+G+VG +YF+C PK+GIF+ L+++++
Sbjct: 57 IELDEPEGKNNGSVGRVQYFKCAPKYGIFAPLSKISK 93
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 112 PQATHSSPLYSMDSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPD 168
P + H++ +M ++ +GDRV + G G + + G T+F G WAG LDEP+
Sbjct: 9 PNSDHTTS-RAMLTSLGLKLGDRVVIAGQKVGTLRFCGTTEFASGQWAGI-ELDEPE 63
>pdb|2CP5|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Clip- 170RESTIN
Length = 141
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 54/74 (72%), Gaps = 3/74 (4%)
Query: 264 NEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCE 323
++ R+G+RV + G+K G +++ G+T FA G+W G+ LD+P+GKNDGSV GVRYF CE
Sbjct: 63 DDFRVGERVWV---NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCE 119
Query: 324 PRFGVFAPVSKVSK 337
P G+F SK+++
Sbjct: 120 PLKGIFTRPSKLTR 133
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 31/37 (83%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTR 37
IVLDEP GKNDG+V G RYFQC+P GIF+R ++LTR
Sbjct: 97 IVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTR 133
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 127 DSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
D F +G+RV+V G PG I ++GET+F PG WAG LDEP
Sbjct: 63 DDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAG-IVLDEP 102
>pdb|2E3I|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 1
Length = 86
Score = 81.6 bits (200), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 59/84 (70%), Gaps = 4/84 (4%)
Query: 264 NEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCE 323
++ R+G+RV + G+K G +++ G+T FA G+W G+ LD+P+GKNDGSV GVRYF CE
Sbjct: 1 DDFRVGERVWV---NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCE 57
Query: 324 PRFGVFAPVSKVSKSPVQASGHAS 347
P G+F SK+++ VQA A+
Sbjct: 58 PLKGIFTRPSKLTRK-VQAEDEAN 80
Score = 60.5 bits (145), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/37 (70%), Positives = 31/37 (83%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTR 37
IVLDEP GKNDG+V G RYFQC+P GIF+R ++LTR
Sbjct: 35 IVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTR 71
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 127 DSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
D F +G+RV+V G PG I ++GET+F PG WAG LDEP
Sbjct: 1 DDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGI-VLDEP 40
>pdb|2Z0W|A Chain A, Crystal Structure Of The 2nd Cap-Gly Domain In Human
Restin- Like Protein 2 Reveals A Swapped-Dimer
Length = 96
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 52/72 (72%), Gaps = 3/72 (4%)
Query: 266 IRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPR 325
+RLG+RV++ G + G +++ G T FA G W G+EL+ P GKNDGSV GV+YF C PR
Sbjct: 11 LRLGERVLV---VGQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPR 67
Query: 326 FGVFAPVSKVSK 337
+G+FAP S+V +
Sbjct: 68 YGIFAPPSRVQR 79
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 31/41 (75%), Gaps = 3/41 (7%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIF---SRLNRLTRS 38
I L++P GKNDG+VGG +YF C P++GIF SR+ R+T S
Sbjct: 43 IELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRVQRVTDS 83
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 131 IGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
+G+RV V G G I + G T F PG W G L++P
Sbjct: 13 LGERVLVVGQRLGTIRFFGTTNFAPGYWYGIE-LEKP 48
>pdb|1WHH|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Mouse
Clip170-Related 59kda Protein Clipr-59
Length = 102
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 268 LGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFG 327
+GD+V++ G K G++++ G T FA G W G+ELD P GK+DGSV GVRYF C PR G
Sbjct: 28 VGDQVLV---AGQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHG 84
Query: 328 VFAPVSKVSK 337
VFAP S++ +
Sbjct: 85 VFAPASRIQR 94
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 29/37 (78%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTR 37
I LD+PTGK+DG+V G RYF C P+HG+F+ +R+ R
Sbjct: 58 IELDQPTGKHDGSVFGVRYFTCAPRHGVFAPASRIQR 94
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 131 IGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
+GD+V V G G + + G+T F PG W G LD+P
Sbjct: 28 VGDQVLVAGQKQGIVRFYGKTDFAPGYWYGIE-LDQP 63
>pdb|3RDV|A Chain A, Structure Of The Slain2c-Clipcg1 Complex
pdb|3RDV|B Chain B, Structure Of The Slain2c-Clipcg1 Complex
pdb|3RDV|C Chain C, Structure Of The Slain2c-Clipcg1 Complex
pdb|3RDV|D Chain D, Structure Of The Slain2c-Clipcg1 Complex
Length = 72
Score = 80.1 bits (196), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/74 (48%), Positives = 54/74 (72%), Gaps = 3/74 (4%)
Query: 264 NEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCE 323
++ R+G+RV + G+K G +++ G+T FA G+W G+ LD+P+GKNDGSV GVRYF CE
Sbjct: 1 DDFRVGERVWV---NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCE 57
Query: 324 PRFGVFAPVSKVSK 337
P G+F SK+++
Sbjct: 58 PLKGIFTRPSKLTR 71
Score = 60.5 bits (145), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/37 (70%), Positives = 31/37 (83%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTR 37
IVLDEP GKNDG+V G RYFQC+P GIF+R ++LTR
Sbjct: 35 IVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTR 71
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 127 DSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
D F +G+RV+V G PG I ++GET+F PG WAG LDEP
Sbjct: 1 DDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGI-VLDEP 40
>pdb|2COZ|A Chain A, Solution Structure Of The Cap-Gly Domain In Human
Centrosome-Associated Protein Cap350
Length = 122
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 3/75 (4%)
Query: 265 EIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEP 324
+ +GDRV+I + Q G+L++KG+T FA G W GVELD P G N+G+ DG+ YF C+
Sbjct: 31 DFHIGDRVLIGNVQ---PGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKE 87
Query: 325 RFGVFAPVSKVSKSP 339
+ G+FAP K+S P
Sbjct: 88 KHGIFAPPQKISHIP 102
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSP 39
+ LD+P G N+GT G YF+C KHGIF+ +++ P
Sbjct: 64 VELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKISHIP 102
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 113 QATHSSPLYSMDSTDS---FIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPD 168
Q T S L S+ + D F IGDRV +G PG + + GET F G WAG LD+P+
Sbjct: 13 QVTESPSLASVPTADELFDFHIGDRVLIGNVQPGILRFKGETSFAKGFWAGV-ELDKPE 70
>pdb|2CP7|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse
Clip- 170RESTIN
Length = 84
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 52/72 (72%), Gaps = 3/72 (4%)
Query: 266 IRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPR 325
R+G+RV + G+K G +++ G+T FA G+W G+ LD+P+GKNDGSV GVRYF CEP
Sbjct: 8 FRVGERVWV---NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 64
Query: 326 FGVFAPVSKVSK 337
G+F SK+++
Sbjct: 65 KGIFTRPSKLTR 76
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 31/37 (83%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTR 37
IVLDEP GKNDG+V G RYFQC+P GIF+R ++LTR
Sbjct: 40 IVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTR 76
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 126 TDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
+ F +G+RV+V G PG I ++GET+F PG WAG LDEP
Sbjct: 5 SSGFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGI-VLDEP 45
>pdb|2QK0|A Chain A, Structural Basis Of Microtubule Plus End Tracking By
Xmap215, Clip-170 And Eb1
Length = 74
Score = 78.6 bits (192), Expect = 6e-15, Method: Composition-based stats.
Identities = 36/74 (48%), Positives = 53/74 (71%), Gaps = 3/74 (4%)
Query: 264 NEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCE 323
++ R+G+RV + G+K G +++ G+T FA G+W G+ LD+P+GKNDGSV GVRYF CE
Sbjct: 2 SDFRVGERVWV---NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCE 58
Query: 324 PRFGVFAPVSKVSK 337
P G+F SK ++
Sbjct: 59 PLKGIFTRPSKXTR 72
Score = 58.2 bits (139), Expect = 7e-09, Method: Composition-based stats.
Identities = 25/37 (67%), Positives = 30/37 (81%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTR 37
IVLDEP GKNDG+V G RYFQC+P GIF+R ++ TR
Sbjct: 36 IVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKXTR 72
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 129 FIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
F +G+RV+V G PG I ++GET+F PG WAG LDEP
Sbjct: 4 FRVGERVWVNGNKPGFIQFLGETQFAPGQWAGI-VLDEP 41
>pdb|2CP2|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Clip- 115CYLN2
Length = 95
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 54/84 (64%), Gaps = 10/84 (11%)
Query: 256 LGDRVIIRNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVD 315
LGD V+ G+RV + G K GV++Y G+T FA G+W GV LDDP+GKNDG+V
Sbjct: 16 LGDFVV-------GERVWVN---GVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVG 65
Query: 316 GVRYFYCEPRFGVFAPVSKVSKSP 339
GVRYF C G+F SK+++ P
Sbjct: 66 GVRYFECPALQGIFTRPSKLTRQP 89
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 30/39 (76%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSP 39
+VLD+P GKNDG VGG RYF+C GIF+R ++LTR P
Sbjct: 51 VVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKLTRQP 89
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Query: 124 DSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP--------DRARIRHC 175
D F++G+RV+V G PG + Y+GET+F PG WAG LD+P R C
Sbjct: 14 DFLGDFVVGERVWVNGVKPGVVQYLGETQFAPGQWAGV-VLDDPVGKNDGAVGGVRYFEC 72
Query: 176 PRASAISNAIRSTAIFSRLNALTR 199
P IF+R + LTR
Sbjct: 73 PALQ---------GIFTRPSKLTR 87
>pdb|1TOV|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly
Domain Of F53f4.3
Length = 98
Score = 68.2 bits (165), Expect = 7e-12, Method: Composition-based stats.
Identities = 36/77 (46%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 266 IRLGDRV-IIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEP 324
I +G+R + +Q ++ G + Y G T F +G W GV+ D+P+GKNDGSV GVRYF C+P
Sbjct: 15 IMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCDP 74
Query: 325 RFGVFA-PVS-KVSKSP 339
++G F PV KV P
Sbjct: 75 KYGGFVRPVDVKVGDFP 91
Score = 50.4 bits (119), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/28 (71%), Positives = 22/28 (78%)
Query: 4 DEPTGKNDGTVGGFRYFQCDPKHGIFSR 31
DEP GKNDG+V G RYF CDPK+G F R
Sbjct: 54 DEPVGKNDGSVAGVRYFDCDPKYGGFVR 81
Score = 32.3 bits (72), Expect = 0.42, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 124 DSTDSFIIGDR--VYVGGTIP--GKIAYIGETKFGPGDWAGKNRLDEP 167
++ + ++G+R V VG + G++AY+G TKF G W G + DEP
Sbjct: 10 EAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGV-KYDEP 56
>pdb|1LPL|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly
Domain Of F53f4.3
Length = 95
Score = 67.8 bits (164), Expect = 9e-12, Method: Composition-based stats.
Identities = 36/77 (46%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 266 IRLGDRV-IIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEP 324
I +G+R + +Q ++ G + Y G T F +G W GV+ D+P+GKNDGSV GVRYF C+P
Sbjct: 12 IMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCDP 71
Query: 325 RFGVFA-PVS-KVSKSP 339
++G F PV KV P
Sbjct: 72 KYGGFVRPVDVKVGDFP 88
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/28 (71%), Positives = 22/28 (78%)
Query: 4 DEPTGKNDGTVGGFRYFQCDPKHGIFSR 31
DEP GKNDG+V G RYF CDPK+G F R
Sbjct: 51 DEPVGKNDGSVAGVRYFDCDPKYGGFVR 78
Score = 32.3 bits (72), Expect = 0.47, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 124 DSTDSFIIGDR--VYVGGTIP--GKIAYIGETKFGPGDWAGKNRLDEP 167
++ + ++G+R V VG + G++AY+G TKF G W G + DEP
Sbjct: 7 EAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGV-KYDEP 53
>pdb|1WHG|A Chain A, Solution Structure Of The Cap-Gly Domain In Mouse Tubulin
Specific Chaperone B
Length = 113
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 245 RLPTLSEDEIRLGDRVIIRNEIRLGDRVIIRSSQGS-KSGVLKYKGDTYFADGEWCGVEL 303
R +E RL + + I +G R +R+ S + G + Y G T F G W GV
Sbjct: 12 RAQQEAEAAQRLSEEKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRY 71
Query: 304 DDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVS 336
D+PLGKNDGSV+G RYF C+ ++G F S V+
Sbjct: 72 DEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVT 104
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLT 36
+ DEP GKNDG+V G RYF+C K+G F + + +T
Sbjct: 69 VRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVT 104
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 143 GKIAYIGETKFGPGDWAGKNRLDEP 167
G + Y+G T F PG W G R DEP
Sbjct: 51 GTVMYVGLTDFKPGYWVGV-RYDEP 74
>pdb|2COW|A Chain A, Solution Structure Of The Cap-Gly Domain In Human Kinesin-
Like Protein Kif13b
Length = 100
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 266 IRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPR 325
+R G+ V + + K+GV++Y G F +G W GVELD P GKNDGS+ G +YF C P
Sbjct: 24 LREGEFVTVGAH---KTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCNPG 80
Query: 326 FGVFAPVSKVSKS 338
+G+ S+V ++
Sbjct: 81 YGLLVRPSRVRRA 93
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 30/38 (78%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRS 38
+ LD P+GKNDG++GG +YF+C+P +G+ R +R+ R+
Sbjct: 56 VELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVRRA 93
>pdb|2COY|A Chain A, Solution Structure Of The Cap-Gly Domain In Human Dynactin
1
Length = 112
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 266 IRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPR 325
+R+G RV + G + Y G T FA G+W GV LD+ GKNDG+V G +YF C+
Sbjct: 34 LRVGSRVEVIGK--GHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEG 91
Query: 326 FGVFAPVSKV 335
G+F S++
Sbjct: 92 HGIFVRQSQI 101
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRL 35
++LDE GKNDGTV G +YF CD HGIF R +++
Sbjct: 67 VILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQI 101
>pdb|2HKN|A Chain A, Crystal Structure Of The Cap-Gly Domain Of Human
Dynactin-1 (P150- Glued)
pdb|2HKN|B Chain B, Crystal Structure Of The Cap-Gly Domain Of Human
Dynactin-1 (P150- Glued)
pdb|2HKQ|B Chain B, Crystal Structure Of The C-Terminal Domain Of Human Eb1 In
Complex With The Cap-Gly Domain Of Human Dynactin-1
(P150-Glued)
pdb|3E2U|A Chain A, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|3E2U|B Chain B, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|3E2U|C Chain C, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|3E2U|D Chain D, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
Length = 97
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 266 IRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPR 325
+R+G RV + G + Y G T FA G+W GV LD+ GKNDG+V G +YF C+
Sbjct: 13 LRVGSRVEVIGK--GHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEG 70
Query: 326 FGVFAPVSKV 335
G+F S++
Sbjct: 71 HGIFVRQSQI 80
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRL 35
++LDE GKNDGTV G +YF CD HGIF R +++
Sbjct: 46 VILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQI 80
>pdb|2HL3|A Chain A, Crystal Structure Of The A49m Mutant Cap-Gly Domain Of
Human Dynactin-1 (P150-Glued) In Complex With Human Eb1
C- Terminal Hexapeptide
pdb|2HL3|B Chain B, Crystal Structure Of The A49m Mutant Cap-Gly Domain Of
Human Dynactin-1 (P150-Glued) In Complex With Human Eb1
C- Terminal Hexapeptide
pdb|2HL5|C Chain C, Crystal Structure Of The C-Terminal Domain Of Human Eb1 In
Complex With The A49m Mutant Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|2HL5|D Chain D, Crystal Structure Of The C-Terminal Domain Of Human Eb1 In
Complex With The A49m Mutant Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
Length = 97
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 266 IRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPR 325
+R+G RV + G + Y G T FA G+W GV LD+ GKNDG+V G +YF C+
Sbjct: 13 LRVGSRVEVIGK--GHRGTVAYVGMTLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEG 70
Query: 326 FGVFAPVSKV 335
G+F S++
Sbjct: 71 HGIFVRQSQI 80
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRL 35
++LDE GKNDGTV G +YF CD HGIF R +++
Sbjct: 46 VILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQI 80
>pdb|3TQ7|P Chain P, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain Of
P150glued
pdb|3TQ7|Q Chain Q, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain Of
P150glued
Length = 71
Score = 59.7 bits (143), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 266 IRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPR 325
+R+G RV + +G + G + Y G T FA G+W GV LD+ GKNDG+V G +YF C+
Sbjct: 1 LRVGSRVEV-IGKGHR-GTVAYVGMTLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEG 58
Query: 326 FGVFAPVSKV 335
G+F S++
Sbjct: 59 HGIFVRQSQI 68
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRL 35
++LDE GKNDGTV G +YF CD HGIF R +++
Sbjct: 34 VILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQI 68
Score = 28.5 bits (62), Expect = 5.9, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 131 IGDRVYV-GGTIPGKIAYIGETKFGPGDWAG 160
+G RV V G G +AY+G T F G W G
Sbjct: 3 VGSRVEVIGKGHRGTVAYVGMTLFATGKWVG 33
>pdb|1TXQ|A Chain A, Crystal Structure Of The Eb1 C-Terminal Domain Complexed
With The Cap-Gly Domain Of P150glued
pdb|2HQH|A Chain A, Crystal Structure Of P150glued And Clip-170
pdb|2HQH|B Chain B, Crystal Structure Of P150glued And Clip-170
pdb|2HQH|C Chain C, Crystal Structure Of P150glued And Clip-170
pdb|2HQH|D Chain D, Crystal Structure Of P150glued And Clip-170
Length = 93
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 266 IRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPR 325
+R+G RV + +G + G + Y G T FA G+W GV LD+ GKNDG+V G +YF C+
Sbjct: 13 LRVGSRVEV-IGKGHR-GTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEG 70
Query: 326 FGVFAPVSKV 335
G+F S++
Sbjct: 71 HGIFVRQSQI 80
Score = 47.8 bits (112), Expect = 9e-06, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRL 35
++LDE GKNDGTV G +YF CD HGIF R +++
Sbjct: 46 VILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQI 80
>pdb|1WHK|A Chain A, Solution Structure Of The 3rd Cap-Gly Domain In Mouse
1700024k14rik Hypothetical Protein
Length = 91
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 265 EIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEP 324
++ G +V++ SS ++ ++Y G T FA G W G+EL GKNDG+V RYF C+P
Sbjct: 12 KLHEGSQVLLTSS--NEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKP 69
Query: 325 RFGVFAPVSKVS 336
+GV S+V+
Sbjct: 70 NYGVLVRPSRVT 81
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 3 LDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLT 36
L GKNDG VG RYF C P +G+ R +R+T
Sbjct: 48 LRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRVT 81
>pdb|4B6M|A Chain A, Trypansoma Brucei Tubulin Binding Cofactor B Cap-Gly
Domain
pdb|4B6M|B Chain B, Trypansoma Brucei Tubulin Binding Cofactor B Cap-Gly
Domain
Length = 84
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 266 IRLGDRVIIRSSQGSKSGVLKYKGDTY-FADGEWCGVELDDPLGKNDGSVDGVRYFYCEP 324
I +GDR + R G + G +++ G G W GVE D+P+GK DG+V G R F C+P
Sbjct: 6 IHVGDRCLCRP--GDRLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVFQCQP 63
Query: 325 RFGVF 329
+G F
Sbjct: 64 NYGGF 68
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRL 35
+ DEP GK DGTV G R FQC P +G F R +++
Sbjct: 40 VEFDEPVGKGDGTVKGTRVFQCQPNYGGFLRPDQV 74
>pdb|1IXD|A Chain A, Solution Structure Of The Cap-Gly Domain From Human
Cylindromatosis Tomour-Suppressor Cyld
Length = 104
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 10/52 (19%)
Query: 4 DEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSPLLHLSDRPTSRNSSVD 55
DE G DGT G RYF C K +F +L S RP SR +S+
Sbjct: 56 DECAGCTDGTFRGTRYFTCALKKALFVKLK----------SCRPDSRFASLQ 97
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 283 GVLKYKGDTYFADGEWCGVELDDPL-GKNDGSVDGVRYFYCEPRFGVF 329
GV+++ G + G+EL+D G DG+ G RYF C + +F
Sbjct: 34 GVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALF 81
>pdb|1YU1|A Chain A, Major Tropism Determinant P3c Variant
Length = 381
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 42 HLSDRPTSRNSSVDEGRYSPFKKSSFDGLYSRKSSDGGLFS 82
HL+D + N ++ +G SP K + F G S SDG ++
Sbjct: 200 HLTDGTSKYNVTIADGSASPKKSTKFGGDGSAAYSDGAWYN 240
>pdb|1YU4|A Chain A, Major Tropism Determinant U1 Variant
pdb|1YU4|B Chain B, Major Tropism Determinant U1 Variant
pdb|1YU4|C Chain C, Major Tropism Determinant U1 Variant
Length = 381
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 42 HLSDRPTSRNSSVDEGRYSPFKKSSFDGLYSRKSSDGGLFS 82
HL+D + N ++ +G SP K + F G S SDG ++
Sbjct: 200 HLTDGTSKYNVTIADGSASPKKSTKFGGDGSAAYSDGAWYN 240
>pdb|1YU2|A Chain A, Major Tropism Determinant M1 Variant
Length = 381
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 42 HLSDRPTSRNSSVDEGRYSPFKKSSFDGLYSRKSSDGGLFS 82
HL+D + N ++ +G SP K + F G S SDG ++
Sbjct: 200 HLTDGTSKYNVTIADGSASPKKSTKFGGDGSAAYSDGAWYN 240
>pdb|1YU3|A Chain A, Major Tropism Determinant I1 Variant
Length = 381
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 42 HLSDRPTSRNSSVDEGRYSPFKKSSFDGLYSRKSSDGGLFS 82
HL+D + N ++ +G SP K + F G S SDG ++
Sbjct: 200 HLTDGTSKYNVTIADGSASPKKSTKFGGDGSAAYSDGAWYN 240
>pdb|1WHM|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Cylindromatosis Tumor Suppressor Cyld
Length = 92
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 274 IRSSQGSKSGVLKYKGDTYFAD--------GEWCGVELDDPLGKNDGSVDGVRY--FYC 322
I S K G G F D G + GV++D+P+G DG DGV+ F C
Sbjct: 12 INSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFAC 70
>pdb|2IOU|A Chain A, Major Tropism Determinant P1 (Mtd-P1) Variant Complexed
With Bordetella Brochiseptica Virulence Factor Pertactin
Extracellular Domain (Prn-E).
pdb|2IOU|B Chain B, Major Tropism Determinant P1 (Mtd-P1) Variant Complexed
With Bordetella Brochiseptica Virulence Factor Pertactin
Extracellular Domain (Prn-E).
pdb|2IOU|C Chain C, Major Tropism Determinant P1 (Mtd-P1) Variant Complexed
With Bordetella Brochiseptica Virulence Factor Pertactin
Extracellular Domain (Prn-E).
pdb|2IOU|D Chain D, Major Tropism Determinant P1 (Mtd-P1) Variant Complexed
With Bordetella Brochiseptica Virulence Factor Pertactin
Extracellular Domain (Prn-E).
pdb|2IOU|E Chain E, Major Tropism Determinant P1 (Mtd-P1) Variant Complexed
With Bordetella Brochiseptica Virulence Factor Pertactin
Extracellular Domain (Prn-E).
pdb|2IOU|F Chain F, Major Tropism Determinant P1 (Mtd-P1) Variant Complexed
With Bordetella Brochiseptica Virulence Factor Pertactin
Extracellular Domain (Prn-E)
Length = 376
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 42 HLSDRPTSRNSSVDEGRYSPFKKSSFDGLYSRKSSDGGLFS 82
HL+D + N ++ +G SP K + F G S SDG ++
Sbjct: 196 HLTDGTSKYNVTIADGSASPKKSTKFGGDGSAAYSDGAWYN 236
>pdb|1YU0|A Chain A, Major Tropism Determinant P1 Variant
Length = 381
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 42 HLSDRPTSRNSSVDEGRYSPFKKSSFDGLYSRKSSDGGLFS 82
HL+D + N ++ +G SP K + F G S SDG ++
Sbjct: 200 HLTDGTSKYNVTIADGSASPKKSTKFGGDGSAAYSDGAWYN 240
>pdb|1WHL|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Cylindromatosis Tumor Suppressor Cyld
Length = 95
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 271 RVIIRSSQGSKSGVLKYKGDTYF---ADGEWCGVELDDPLGKNDGSVDGV----RYFYCE 323
+V +RS + GV++++G G + GVEL + G+ G DGV + F C+
Sbjct: 15 KVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEE-GRGQGFTDGVYQGKQLFQCD 73
Query: 324 PRFGVFAPVSKV 335
GVF + K+
Sbjct: 74 EDCGVFVALDKL 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,100,743
Number of Sequences: 62578
Number of extensions: 460671
Number of successful extensions: 965
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 877
Number of HSP's gapped (non-prelim): 90
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)