BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4533
(365 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VJE5|CL190_DROME Restin homolog OS=Drosophila melanogaster GN=CLIP-190 PE=1 SV=1
Length = 1690
Score = 157 bits (397), Expect = 1e-37, Method: Composition-based stats.
Identities = 88/224 (39%), Positives = 120/224 (53%), Gaps = 23/224 (10%)
Query: 125 STDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPDRARIRHCPRASAISNA 184
+T+ FIIG RV++GGT PG+IA+IG+T F G+WAG LDEP+ + C
Sbjct: 119 NTEQFIIGQRVWLGGTRPGQIAFIGDTHFAAGEWAGV-VLDEPN-GKNDGCVSGKRYFQC 176
Query: 185 IRSTAIFSRLNALTRSPSPTSLGPPPHPRQFFSRPKAATHLTIQEVPHLMVSTQGNPSHG 244
IFSRL LT P L P ++ T+ + S +P G
Sbjct: 177 EPKRGIFSRLTRLTTYP----LAGAQTPTSPLAKSSPDRSRTVSPTASIRSSMLRSPGIG 232
Query: 245 RLPTLSEDEIRLGDRVIIRNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELD 304
+N + +GDRVI+ S GS+ G+L+Y G+T FA G WCGVELD
Sbjct: 233 G-----------------KNGMAVGDRVIVSSGFGSRPGILRYLGETQFAPGNWCGVELD 275
Query: 305 DPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSPVQASGHASK 348
+P GKNDG+VD +RYF C+P++GVF P++KVS SP S+
Sbjct: 276 EPSGKNDGTVDDIRYFECKPKYGVFVPIAKVSLSPSSKKTRLSR 319
Score = 95.9 bits (237), Expect = 5e-19, Method: Composition-based stats.
Identities = 66/170 (38%), Positives = 80/170 (47%), Gaps = 50/170 (29%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSPLLHLSDRPTSRNSSVDEGRYS 60
+VLDEP GKNDG V G RYFQC+PK GIFSRL RLT PL + PT S
Sbjct: 155 VVLDEPNGKNDGCVSGKRYFQCEPKRGIFSRLTRLTTYPLAG-AQTPT-----------S 202
Query: 61 PFKKSSFDGLYSRKSSDGGLFSRTSPEDISTASPVSECSPLSAKYPSPPCKPQATHSSPL 120
P KS SP+ T SP + S S+ SP
Sbjct: 203 PLAKS-------------------SPDRSRTVSPTA--SIRSSMLRSP------------ 229
Query: 121 YSMDSTDSFIIGDRVYVG---GTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
+ + +GDRV V G+ PG + Y+GET+F PG+W G LDEP
Sbjct: 230 -GIGGKNGMAVGDRVIVSSGFGSRPGILRYLGETQFAPGNWCGV-ELDEP 277
Score = 55.1 bits (131), Expect = 9e-07, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 30/39 (76%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSP 39
+ LDEP+GKNDGTV RYF+C PK+G+F + +++ SP
Sbjct: 272 VELDEPSGKNDGTVDDIRYFECKPKYGVFVPIAKVSLSP 310
>sp|P30622|CLIP1_HUMAN CAP-Gly domain-containing linker protein 1 OS=Homo sapiens GN=CLIP1
PE=1 SV=2
Length = 1438
Score = 150 bits (378), Expect = 2e-35, Method: Composition-based stats.
Identities = 100/304 (32%), Positives = 148/304 (48%), Gaps = 45/304 (14%)
Query: 86 PEDISTASPVSECSPLSAKYPSPPCKPQATHSSPLYSMDSTDSFIIGDRVYVGGTIPGKI 145
P + +P + +P+ S K +T SS + D F +G+RV+V G PG I
Sbjct: 18 PGSTALKTPTAVVAPVEKTISSE--KASSTPSSETQE-EFVDDFRVGERVWVNGNKPGFI 74
Query: 146 AYIGETKFGPGDWAGKNRLDEP------DRARIRH--CPRASAI----SNAIRSTAIFSR 193
++GET+F PG WAG LDEP A +R+ C I S R
Sbjct: 75 QFLGETQFAPGQWAGI-VLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRKVQAEDE 133
Query: 194 LNALTRSPSPTSLGP------------PPHPRQFFSRPKAATHLTIQEVPHLMVSTQGNP 241
N L +P+ + P P P +P P +S
Sbjct: 134 ANGLQTTPASRATSPLCTSTASMVSSSPSTPSNIPQKPSQPAAKEPSATPP--ISNLTKT 191
Query: 242 SHGRLPTLSE-DEIRLGDRVIIRNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCG 300
+ + LSE I+ G+R E+++GDRV++ G+K+GV+++ G+T FA GEWCG
Sbjct: 192 ASESISNLSEAGSIKKGER-----ELKIGDRVLV---GGTKAGVVRFLGETDFAKGEWCG 243
Query: 301 VELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSK------SPVQASGHASKNCVVHP 354
VELD+PLGKNDG+V G RYF C+P++G+FAPV KV+K +P +A +A + +
Sbjct: 244 VELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPSTTPAKAKANAVRRVMATT 303
Query: 355 SKDI 358
S +
Sbjct: 304 SASL 307
Score = 101 bits (251), Expect = 9e-21, Method: Composition-based stats.
Identities = 69/188 (36%), Positives = 88/188 (46%), Gaps = 49/188 (26%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSPLLHLSDRPTSRNSSVDEGRYS 60
IVLDEP GKNDG+V G RYFQC+P GIF+R ++LTR + + DE
Sbjct: 90 IVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTR------------KVQAEDEA--- 134
Query: 61 PFKKSSFDGLYSRKSSDGGLFSRTSPEDISTASPVSECSPLSAKYPSPPCKPQATHSS-- 118
+GL + +S TSP STAS VS + P P +P A S
Sbjct: 135 -------NGLQTTPASRA-----TSPLCTSTASMVSSSPSTPSNIPQKPSQPAAKEPSAT 182
Query: 119 -PLYSMDSTDS------------------FIIGDRVYVGGTIPGKIAYIGETKFGPGDWA 159
P+ ++ T S IGDRV VGGT G + ++GET F G+W
Sbjct: 183 PPISNLTKTASESISNLSEAGSIKKGERELKIGDRVLVGGTKAGVVRFLGETDFAKGEWC 242
Query: 160 GKNRLDEP 167
G LDEP
Sbjct: 243 GV-ELDEP 249
Score = 56.6 bits (135), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTR 37
+ LDEP GKNDG V G RYFQC PK+G+F+ ++++T+
Sbjct: 244 VELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTK 280
>sp|Q9UDT6|CLIP2_HUMAN CAP-Gly domain-containing linker protein 2 OS=Homo sapiens GN=CLIP2
PE=1 SV=1
Length = 1046
Score = 149 bits (375), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 134/241 (55%), Gaps = 48/241 (19%)
Query: 129 FIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP----DRA----RIRHCPRASA 180
F++G+RV+V G PG + Y+GET+F PG WAG LD+P D A R CP
Sbjct: 79 FVVGERVWVNGVKPGVVQYLGETQFAPGQWAGVV-LDDPVGKNDGAVGGVRYFECP---- 133
Query: 181 ISNAIRSTAIFSRLNALTRSPSPTSLGPPPHPRQFFSRPKAATH-------LTIQEVP-- 231
A++ IF+R + LTR P+ G H + + + H LT + +P
Sbjct: 134 ---ALQ--GIFTRPSKLTRQPTAEGSGSDAHSVESLTAQNLSLHSGTATPPLTSRVIPLR 188
Query: 232 ----HLMVSTQGNPSHGRLPTLSEDEIRLGDRVIIRNEIRLGDRVIIRSSQGSKSGVLKY 287
+ V T GN S L ++ G++ ++RLGDRV++ G+K+GV++Y
Sbjct: 189 ESVLNSSVKT-GNESGSNLS--DSGSVKRGEK-----DLRLGDRVLV---GGTKTGVVRY 237
Query: 288 KGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKV------SKSPVQ 341
G+T FA GEWCGVELD+PLGKNDG+V G RYF C P+FG+FAP+ KV S SP +
Sbjct: 238 VGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKVIRIGFPSTSPAK 297
Query: 342 A 342
A
Sbjct: 298 A 298
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 80/173 (46%), Gaps = 33/173 (19%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSPLLHLSDRPTSRNSSVDEGRYS 60
+VLD+P GKNDG VGG RYF+C GIF+R ++LTR +PT+ S D
Sbjct: 111 VVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKLTR--------QPTAEGSGSD----- 157
Query: 61 PFKKSSFDGLYSRKSSDGGLFSRTSPEDISTASP--VSECSPLSAKYPSPPCKPQATHSS 118
S + L ++ S L S TA+P S PL + K S
Sbjct: 158 ---AHSVESLTAQNLS---LHS-------GTATPPLTSRVIPLRESVLNSSVKTGNESGS 204
Query: 119 PLYSMDST----DSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
L S +GDRV VGGT G + Y+GET F G+W G LDEP
Sbjct: 205 NLSDSGSVKRGEKDLRLGDRVLVGGTKTGVVRYVGETDFAKGEWCGVE-LDEP 256
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 28/37 (75%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTR 37
+ LDEP GKNDG V G RYFQC PK G+F+ ++++ R
Sbjct: 251 VELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKVIR 287
>sp|Q922J3|CLIP1_MOUSE CAP-Gly domain-containing linker protein 1 OS=Mus musculus GN=Clip1
PE=1 SV=1
Length = 1391
Score = 147 bits (370), Expect = 2e-34, Method: Composition-based stats.
Identities = 90/235 (38%), Positives = 125/235 (53%), Gaps = 35/235 (14%)
Query: 127 DSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP------DRARIRH--CPRA 178
D F +G+RV+V G PG I ++GET+F PG WAG LDEP A +R+ C
Sbjct: 56 DDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGI-VLDEPIGKNDGSVAGVRYFQCEPL 114
Query: 179 SAI----SNAIRSTAIFSRLNALTRSP----SPTSLGP-------PPHPRQFFSRPKAAT 223
I S R N L +P SP S P P +P +T
Sbjct: 115 KGIFTRPSKLTRKVQAEDEANGLQAAPGRTASPLSTAAATMVSSSPATPSNIPHKPSQST 174
Query: 224 HLTIQEVPHLMVSTQGNPSHGRLPTLSE-DEIRLGDRVIIRNEIRLGDRVIIRSSQGSKS 282
P +S + + LSE ++ G+R E+++GDRV++ G+K+
Sbjct: 175 AKEPSATPQ--ISNLTKTASESISNLSEAGSVKKGER-----ELKVGDRVLV---GGTKA 224
Query: 283 GVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSK 337
GV+++ G+T FA GEWCGVELD+PLGKNDG+V G RYF C+P++G+FAPV KV+K
Sbjct: 225 GVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTK 279
Score = 89.0 bits (219), Expect = 5e-17, Method: Composition-based stats.
Identities = 61/183 (33%), Positives = 85/183 (46%), Gaps = 40/183 (21%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSPLLHLSDRPTSRNSSVDEGRYS 60
IVLDEP GKNDG+V G RYFQC+P GIF+R ++LTR + + DE
Sbjct: 90 IVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTR------------KVQAEDEA--- 134
Query: 61 PFKKSSFDGLYSRKSSDGGLFSRTSPEDISTASPVSECS----PLSAKYPSPPCKPQ--- 113
+GL + S T+ + ++SP + + P + P PQ
Sbjct: 135 -------NGLQAAPGRTASPLS-TAAATMVSSSPATPSNIPHKPSQSTAKEPSATPQISN 186
Query: 114 --ATHSSPLYSMDSTDS-------FIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRL 164
T S + ++ S +GDRV VGGT G + ++GET F G+W G L
Sbjct: 187 LTKTASESISNLSEAGSVKKGERELKVGDRVLVGGTKAGVVRFLGETDFAKGEWCGV-EL 245
Query: 165 DEP 167
DEP
Sbjct: 246 DEP 248
Score = 56.6 bits (135), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTR 37
+ LDEP GKNDG V G RYFQC PK+G+F+ ++++T+
Sbjct: 243 VELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTK 279
>sp|Q9Z0H8|CLIP2_MOUSE CAP-Gly domain-containing linker protein 2 OS=Mus musculus GN=Clip2
PE=1 SV=2
Length = 1047
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 133/241 (55%), Gaps = 48/241 (19%)
Query: 129 FIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP----DRA----RIRHCPRASA 180
F++G+RV+V G PG + Y+GET+F PG WAG LD+P D A R CP
Sbjct: 80 FVVGERVWVNGVKPGVVQYLGETQFAPGQWAGVV-LDDPVGKNDGAVGGVRYFECP---- 134
Query: 181 ISNAIRSTAIFSRLNALTRSPSPTSLGPPPHPRQFFSRPKAATH-------LTIQEVP-- 231
A++ IF+R + LTR P+ G H + + + H LT + +P
Sbjct: 135 ---ALQ--GIFTRPSKLTRQPTAEGSGSDTHSVESLTAQNLSLHSGTATPPLTGRVIPLR 189
Query: 232 ----HLMVSTQGNPSHGRLPTLSEDEIRLGDRVIIRNEIRLGDRVIIRSSQGSKSGVLKY 287
+ V T GN S L ++ GD+ ++ LGDRV++ G+K+GV++Y
Sbjct: 190 ESVLNSSVKT-GNESGSNLS--DSGSVKRGDK-----DLHLGDRVLV---GGTKTGVVRY 238
Query: 288 KGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKV------SKSPVQ 341
G+T FA GEWCGVELD+PLGKNDG+V G RYF C P+FG+FAP+ KV S SP +
Sbjct: 239 VGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKVIRIGFPSTSPAK 298
Query: 342 A 342
A
Sbjct: 299 A 299
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 79/173 (45%), Gaps = 33/173 (19%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSPLLHLSDRPTSRNSSVDEGRYS 60
+VLD+P GKNDG VGG RYF+C GIF+R ++LTR +PT+ S D
Sbjct: 112 VVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKLTR--------QPTAEGSGSD----- 158
Query: 61 PFKKSSFDGLYSRKSSDGGLFSRTSPEDISTASP--VSECSPLSAKYPSPPCKPQATHSS 118
S + L ++ S L S TA+P PL + K S
Sbjct: 159 ---THSVESLTAQNLS---LHS-------GTATPPLTGRVIPLRESVLNSSVKTGNESGS 205
Query: 119 PLYSMDST----DSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
L S +GDRV VGGT G + Y+GET F G+W G LDEP
Sbjct: 206 NLSDSGSVKRGDKDLHLGDRVLVGGTKTGVVRYVGETDFAKGEWCGVE-LDEP 257
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 28/37 (75%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTR 37
+ LDEP GKNDG V G RYFQC PK G+F+ ++++ R
Sbjct: 252 VELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKVIR 288
>sp|O55156|CLIP2_RAT CAP-Gly domain-containing linker protein 2 OS=Rattus norvegicus
GN=Clip2 PE=1 SV=1
Length = 1046
Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 133/241 (55%), Gaps = 48/241 (19%)
Query: 129 FIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP----DRA----RIRHCPRASA 180
F++G+RV+V G PG + Y+GET+F PG WAG LD+P D A R CP
Sbjct: 80 FVVGERVWVNGVKPGVVQYLGETQFAPGQWAGVV-LDDPVGKNDGAVGGLRYFECP---- 134
Query: 181 ISNAIRSTAIFSRLNALTRSPSPTSLGPPPHPRQFFSRPKAATH-------LTIQEVP-- 231
A++ IF+R + LTR P+ G H + + + H LT + +P
Sbjct: 135 ---ALQ--GIFTRPSKLTRQPAAEGSGSDGHSVESLTAQNLSLHSGTATPPLTGRVIPLR 189
Query: 232 ----HLMVSTQGNPSHGRLPTLSEDEIRLGDRVIIRNEIRLGDRVIIRSSQGSKSGVLKY 287
+ V T GN S L ++ GD+ ++ LGDRV++ G+K+GV++Y
Sbjct: 190 ESVLNSSVKT-GNESGSNLS--DSGSVKRGDK-----DLHLGDRVLV---GGTKTGVVRY 238
Query: 288 KGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKV------SKSPVQ 341
G+T FA GEWCGVELD+PLGKNDG+V G RYF C P+FG+FAP+ KV S SP +
Sbjct: 239 VGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKVIRIGFPSTSPAK 298
Query: 342 A 342
A
Sbjct: 299 A 299
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 76/177 (42%), Gaps = 41/177 (23%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSPLLHLSDRPTSRNSSVDEGRYS 60
+VLD+P GKNDG VGG RYF+C GIF+R ++LTR P EG
Sbjct: 112 VVLDDPVGKNDGAVGGLRYFECPALQGIFTRPSKLTRQP--------------AAEG--- 154
Query: 61 PFKKSSFDGLYSRKSSDGGLFSRTSPEDIS----TASP--VSECSPLSAKYPSPPCKPQA 114
SDG + +++S TA+P PL + K
Sbjct: 155 -------------SGSDGHSVESLTAQNLSLHSGTATPPLTGRVIPLRESVLNSSVKTGN 201
Query: 115 THSSPLYSMDST----DSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
S L S +GDRV VGGT G + Y+GET F G+W G LDEP
Sbjct: 202 ESGSNLSDSGSVKRGDKDLHLGDRVLVGGTKTGVVRYVGETDFAKGEWCGVE-LDEP 257
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 28/37 (75%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTR 37
+ LDEP GKNDG V G RYFQC PK G+F+ ++++ R
Sbjct: 252 VELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKVIR 288
>sp|O42184|CLIP1_CHICK CAP-Gly domain-containing linker protein 1 OS=Gallus gallus
GN=CLIP1 PE=2 SV=1
Length = 1433
Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats.
Identities = 99/246 (40%), Positives = 139/246 (56%), Gaps = 48/246 (19%)
Query: 124 DSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP------DRARIRH--C 175
D D F +G+RV+V G PG I ++GET+F PG WAG LDEP A +R+ C
Sbjct: 54 DFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGI-VLDEPIGKNDGSVAGVRYFQC 112
Query: 176 -------PRASAISNAIRS--------TAIFSR-------LNALTRSPSPTSLGPPPHPR 213
R S +S + + TA SR A S SP +L P P+
Sbjct: 113 EPLRGIFTRPSKLSRKVLTEDEANGTQTAHASRATSPTSTSTASAVSASPAALLPSGIPQ 172
Query: 214 QFFSRPKAAT-HLTIQEVPHLMVSTQGNPSHGRLPTLSE-DEIRLGDRVIIRNEIRLGDR 271
+ + P AA H T + +L + G+ S+ LSE ++ G+R E+++GDR
Sbjct: 173 K--TSPLAAKEHSTPSQFSNLSKTASGSVSN-----LSEAGSLKKGER-----ELKIGDR 220
Query: 272 VIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAP 331
V++ G+K+GV+++ G+T FA GEWCGVELD+PLGKNDG+V G RYF C+PR+G+FAP
Sbjct: 221 VLV---GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPRYGLFAP 277
Query: 332 VSKVSK 337
V KV+K
Sbjct: 278 VHKVTK 283
Score = 89.0 bits (219), Expect = 5e-17, Method: Composition-based stats.
Identities = 60/168 (35%), Positives = 80/168 (47%), Gaps = 7/168 (4%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSPLLHLSDRPTSRNSSVDEGRYS 60
IVLDEP GKNDG+V G RYFQC+P GIF+R ++L+R L T + +
Sbjct: 91 IVLDEPIGKNDGSVAGVRYFQCEPLRGIFTRPSKLSRKVLTEDEANGTQTAHASRATSPT 150
Query: 61 PFKKSSFDGLYSRKSSDGGLFSRTSPEDISTASPVSECSPLSAKYPSPPCKPQATHSSPL 120
+S G+ +TSP S S+ S LS ++ S
Sbjct: 151 STSTASAVSASPAALLPSGIPQKTSPLAAKEHSTPSQFSNLSKT-----ASGSVSNLSEA 205
Query: 121 YSMDSTD-SFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
S+ + IGDRV VGGT G + ++GET F G+W G LDEP
Sbjct: 206 GSLKKGERELKIGDRVLVGGTKAGVVRFLGETDFAKGEWCGV-ELDEP 252
Score = 85.9 bits (211), Expect = 5e-16, Method: Composition-based stats.
Identities = 41/93 (44%), Positives = 60/93 (64%), Gaps = 4/93 (4%)
Query: 264 NEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCE 323
++ R+G+RV + G+K G +++ G+T FA G+W G+ LD+P+GKNDGSV GVRYF CE
Sbjct: 57 DDFRVGERVWV---NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCE 113
Query: 324 PRFGVFAPVSKVSKSPVQASGHASKNCVVHPSK 356
P G+F SK+S+ V A+ H S+
Sbjct: 114 PLRGIFTRPSKLSRK-VLTEDEANGTQTAHASR 145
Score = 55.5 bits (132), Expect = 6e-07, Method: Composition-based stats.
Identities = 20/37 (54%), Positives = 30/37 (81%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTR 37
+ LDEP GKNDG V G RYFQC P++G+F+ ++++T+
Sbjct: 247 VELDEPLGKNDGAVAGTRYFQCQPRYGLFAPVHKVTK 283
>sp|Q5R686|CLIP3_PONAB CAP-Gly domain-containing linker protein 3 OS=Pongo abelii GN=CLIP3
PE=2 SV=1
Length = 547
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 103/226 (45%), Gaps = 40/226 (17%)
Query: 123 MDSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPDR--------ARIRH 174
M S +GDRV + G G + + G T+F G W G LDEP+ R
Sbjct: 288 MLSALGLRLGDRVLLDGQKTGTLRFCGTTEFASGQWVGVE-LDEPEGKNDGSVGGVRYFI 346
Query: 175 CPRASAISNAIRSTAIFSRLNALTRSPSPTSLGPPPHPRQFFSRPKAA---THLTIQEVP 231
CP + ++ S+++ +P + P PR FSR H ++ P
Sbjct: 347 CPPKQGLFASV------SKISKAVDAPPSSVTSTPRTPRMDFSRVTGKGRREHKGKKKTP 400
Query: 232 HLMVSTQGNPSHGRLPTLSEDEIRLGDRVIIRNEIRLGDRVIIRSSQGSKSGVLKYKGDT 291
+PS G L + +GD+V++ G K G++++ G T
Sbjct: 401 -------SSPSLGSLQQRDRAKAEVGDQVLV---------------AGQKQGIVRFYGKT 438
Query: 292 YFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSK 337
FA G W G+ELD P GK+DGSV GVRYF C PR GVFAP S++ +
Sbjct: 439 DFAPGYWYGIELDQPTGKHDGSVFGVRYFTCPPRHGVFAPASRIQR 484
Score = 95.5 bits (236), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 76/125 (60%), Gaps = 7/125 (5%)
Query: 216 FSRPKAATHLTIQEVPHLMVSTQGNPSHGRLP--TLSEDEIRLGDRVIIRNEIRLGDRVI 273
S KA L +E+ L+ + P LP TL + G+ ++ +RLGDRV+
Sbjct: 244 MSLDKAEAALVAKELRTLL--EEAVPLSCALPKVTLPNYDNVPGNLMLSALGLRLGDRVL 301
Query: 274 IRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVS 333
+ G K+G L++ G T FA G+W GVELD+P GKNDGSV GVRYF C P+ G+FA VS
Sbjct: 302 L---DGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFASVS 358
Query: 334 KVSKS 338
K+SK+
Sbjct: 359 KISKA 363
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 73/169 (43%), Gaps = 43/169 (25%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSPLLHLSDRPTSRNSSVDEGRYS 60
+ LDEP GKNDG+VGG RYF C PK G+F+ +++++++ D P S +S
Sbjct: 326 VELDEPEGKNDGSVGGVRYFICPPKQGLFASVSKISKA-----VDAPPSSVTSTPRTPRM 380
Query: 61 PFKKSSFDGLYSRKSSDGGLFSRTSPEDISTASPVSECSPLSAKYPSPPCKPQATHSSPL 120
F + + G R+ G K PS P L
Sbjct: 381 DFSRVTGKG---RREHKG-----------------------KKKTPSSPS---------L 405
Query: 121 YSMDSTD--SFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
S+ D +GD+V V G G + + G+T F PG W G LD+P
Sbjct: 406 GSLQQRDRAKAEVGDQVLVAGQKQGIVRFYGKTDFAPGYWYGIE-LDQP 453
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 29/37 (78%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTR 37
I LD+PTGK+DG+V G RYF C P+HG+F+ +R+ R
Sbjct: 448 IELDQPTGKHDGSVFGVRYFTCPPRHGVFAPASRIQR 484
>sp|Q96DZ5|CLIP3_HUMAN CAP-Gly domain-containing linker protein 3 OS=Homo sapiens GN=CLIP3
PE=1 SV=3
Length = 547
Score = 101 bits (252), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 103/226 (45%), Gaps = 40/226 (17%)
Query: 123 MDSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPDR--------ARIRH 174
M S +GDRV + G G + + G T+F G W G LDEP+ R
Sbjct: 288 MLSALGLRLGDRVLLDGQKTGTLRFCGTTEFASGQWVGVE-LDEPEGKNDGSVGGVRYFI 346
Query: 175 CPRASAISNAIRSTAIFSRLNALTRSPSPTSLGPPPHPRQFFSRPKAA---THLTIQEVP 231
CP + ++ S+++ +P + P PR FSR H ++ P
Sbjct: 347 CPPKQGLFASV------SKISKAVDAPPSSVTSTPRTPRMDFSRVTGKGRREHKGKKKTP 400
Query: 232 HLMVSTQGNPSHGRLPTLSEDEIRLGDRVIIRNEIRLGDRVIIRSSQGSKSGVLKYKGDT 291
+PS G L + +GD+V++ G K G++++ G T
Sbjct: 401 -------SSPSLGSLQQRDGAKAEVGDQVLV---------------AGQKQGIVRFYGKT 438
Query: 292 YFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSK 337
FA G W G+ELD P GK+DGSV GVRYF C PR GVFAP S++ +
Sbjct: 439 DFAPGYWYGIELDQPTGKHDGSVFGVRYFTCPPRHGVFAPASRIQR 484
Score = 95.5 bits (236), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 76/125 (60%), Gaps = 7/125 (5%)
Query: 216 FSRPKAATHLTIQEVPHLMVSTQGNPSHGRLP--TLSEDEIRLGDRVIIRNEIRLGDRVI 273
S KA L +E+ L+ + P LP TL + G+ ++ +RLGDRV+
Sbjct: 244 MSLDKAEAALVAKELRTLL--EEAVPLSCALPKVTLPNYDNVPGNLMLSALGLRLGDRVL 301
Query: 274 IRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVS 333
+ G K+G L++ G T FA G+W GVELD+P GKNDGSV GVRYF C P+ G+FA VS
Sbjct: 302 L---DGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFASVS 358
Query: 334 KVSKS 338
K+SK+
Sbjct: 359 KISKA 363
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 73/169 (43%), Gaps = 43/169 (25%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSPLLHLSDRPTSRNSSVDEGRYS 60
+ LDEP GKNDG+VGG RYF C PK G+F+ +++++++ D P S +S
Sbjct: 326 VELDEPEGKNDGSVGGVRYFICPPKQGLFASVSKISKA-----VDAPPSSVTSTPRTPRM 380
Query: 61 PFKKSSFDGLYSRKSSDGGLFSRTSPEDISTASPVSECSPLSAKYPSPPCKPQATHSSPL 120
F + + G R+ G K PS P L
Sbjct: 381 DFSRVTGKG---RREHKG-----------------------KKKTPSSPS---------L 405
Query: 121 YSMDSTDSFI--IGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
S+ D +GD+V V G G + + G+T F PG W G LD+P
Sbjct: 406 GSLQQRDGAKAEVGDQVLVAGQKQGIVRFYGKTDFAPGYWYGIE-LDQP 453
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 29/37 (78%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTR 37
I LD+PTGK+DG+V G RYF C P+HG+F+ +R+ R
Sbjct: 448 IELDQPTGKHDGSVFGVRYFTCPPRHGVFAPASRIQR 484
>sp|Q5U243|CLIP3_XENLA CAP-Gly domain-containing linker protein 3 OS=Xenopus laevis
GN=clip3 PE=2 SV=1
Length = 534
Score = 98.6 bits (244), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 78/124 (62%), Gaps = 7/124 (5%)
Query: 220 KAATHLTIQEVPHLMVSTQGNPSHGRLP--TLSEDEIRLGDRVIIRNEIRLGDRVIIRSS 277
KA + + +E+ L++ P LP TL + G+ ++ ++LGDR+++
Sbjct: 238 KADSAMIAKELKQLLLDAV--PLTCNLPKITLPNYDNIPGNLMLASLGLKLGDRILL--- 292
Query: 278 QGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSK 337
K+G L++ G T FA G+W GVELD+P GKNDGSV G+RYF C P+ G+FAPVSK+SK
Sbjct: 293 DAEKAGTLRFCGTTEFASGQWVGVELDEPDGKNDGSVGGIRYFICPPKQGIFAPVSKISK 352
Query: 338 SPVQ 341
+P Q
Sbjct: 353 APDQ 356
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 109/225 (48%), Gaps = 57/225 (25%)
Query: 131 IGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPDRAR------IRH--CPRASAIS 182
+GDR+ + G + + G T+F G W G LDEPD IR+ CP
Sbjct: 286 LGDRILLDAEKAGTLRFCGTTEFASGQWVGV-ELDEPDGKNDGSVGGIRYFICPPKQ--- 341
Query: 183 NAIRSTAIFSRLNALTRSPS--PTSLGPPPH-PRQFFSR-------PKAATHLTIQEVPH 232
IF+ ++ ++++P P+S+ P PR FSR K ATH
Sbjct: 342 ------GIFAPVSKISKAPDQPPSSVTSTPRTPRVDFSRVTGKGRKEKKATH-------- 387
Query: 233 LMVSTQGNPSHGRLPTLSEDEIRLGDRVIIRNEIRLGDRVIIRSSQGSKSGVLKYKGDTY 292
+ + S G L DR ++ EI GD+V++ G K G++++ G T
Sbjct: 388 -----KKSLSVGSL-----------DREGLKIEI--GDQVLV---AGQKQGIVRFYGKTD 426
Query: 293 FADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSK 337
FA G W G+EL+ P GK+DGSV GVRYF C + GVFAP S+V +
Sbjct: 427 FAPGYWFGIELEKPTGKHDGSVFGVRYFTCSAKNGVFAPPSRVQR 471
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 70/164 (42%), Gaps = 49/164 (29%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSPLLHLSDRPTSRNSSVDEGRYS 60
+ LDEP GKNDG+VGG RYF C PK GIF+ +++++++P D+P S +S
Sbjct: 316 VELDEPDGKNDGSVGGIRYFICPPKQGIFAPVSKISKAP-----DQPPSSVTSTPRTPRV 370
Query: 61 PFKKSSFDGLYSRKSSDGGLFSRTSPEDISTASPVSECSPLSAKYPSPPCKPQATHSSPL 120
F + + G +K ATH L
Sbjct: 371 DFSRVTGKGRKEKK---------------------------------------ATHKKSL 391
Query: 121 YSMDSTD----SFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAG 160
S+ S D IGD+V V G G + + G+T F PG W G
Sbjct: 392 -SVGSLDREGLKIEIGDQVLVAGQKQGIVRFYGKTDFAPGYWFG 434
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTR 37
I L++PTGK+DG+V G RYF C K+G+F+ +R+ R
Sbjct: 435 IELEKPTGKHDGSVFGVRYFTCSAKNGVFAPPSRVQR 471
>sp|B9EHT4|CLIP3_MOUSE CAP-Gly domain-containing linker protein 3 OS=Mus musculus GN=Clip3
PE=1 SV=1
Length = 547
Score = 98.6 bits (244), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 100/223 (44%), Gaps = 34/223 (15%)
Query: 123 MDSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPDR--------ARIRH 174
M S +GDRV + G G + + G T+F G W G LDEP+ R
Sbjct: 288 MLSALGLRLGDRVLLDGQKTGTLRFCGTTEFASGQWVGVE-LDEPEGKNDGSVGGVRYFI 346
Query: 175 CPRASAISNAIRSTAIFSRLNALTRSPSPTSLGPPPHPRQFFSRPKAATHLTIQEVPHLM 234
CP + ++ S+++ +P + P PR FSR
Sbjct: 347 CPPKQGLFASV------SKVSKAVDAPPSSVTSTPRTPRMDFSR---------------- 384
Query: 235 VSTQGNPSHGRLPTLSEDEIRLGDRVIIRNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFA 294
V+ +G H + + +GD+V++ G K G++++ G T FA
Sbjct: 385 VTGKGRREHKGKKKSPSSPSLGSLQQREGAKAEVGDQVLV---AGQKQGIVRFYGKTDFA 441
Query: 295 DGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSK 337
G W G+ELD P GK+DGSV GVRYF C PR GVFAP S++ +
Sbjct: 442 PGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVFAPASRIQR 484
Score = 95.9 bits (237), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 76/125 (60%), Gaps = 7/125 (5%)
Query: 216 FSRPKAATHLTIQEVPHLMVSTQGNPSHGRLP--TLSEDEIRLGDRVIIRNEIRLGDRVI 273
S KA L +E+ L+ + P LP TL + G+ ++ +RLGDRV+
Sbjct: 244 MSLDKAEAALVAKELRTLL--EEAVPLSCTLPKVTLPNYDNVPGNLMLSALGLRLGDRVL 301
Query: 274 IRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVS 333
+ G K+G L++ G T FA G+W GVELD+P GKNDGSV GVRYF C P+ G+FA VS
Sbjct: 302 L---DGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFASVS 358
Query: 334 KVSKS 338
KVSK+
Sbjct: 359 KVSKA 363
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 31/38 (81%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRS 38
+ LDEP GKNDG+VGG RYF C PK G+F+ +++++++
Sbjct: 326 VELDEPEGKNDGSVGGVRYFICPPKQGLFASVSKVSKA 363
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 29/37 (78%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTR 37
I LD+PTGK+DG+V G RYF C P+HG+F+ +R+ R
Sbjct: 448 IELDQPTGKHDGSVFGVRYFTCAPRHGVFAPASRIQR 484
>sp|Q8N3C7|CLIP4_HUMAN CAP-Gly domain-containing linker protein 4 OS=Homo sapiens GN=CLIP4
PE=1 SV=1
Length = 705
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 107/410 (26%), Positives = 167/410 (40%), Gaps = 79/410 (19%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLT-----RSPLLHL----SDRPTSRN 51
I LDEP GKN+G+VG +YF+C PK+GIF+ L++++ R + H + P R+
Sbjct: 315 IELDEPEGKNNGSVGKVQYFKCAPKYGIFAPLSKISKAKGRRKNITHTPSTKAAVPLIRS 374
Query: 52 SSVDEGRYSPFKKSSFDGLYSRKSSD---------GGLFSRTSPEDIST----------- 91
+D + K + + S+K S G + +D++
Sbjct: 375 QKIDVAHVT--SKVNTGLMTSKKDSASESTLSLPPGEELKTVTEKDVALLGSVSSCSSTS 432
Query: 92 -----------ASPVSECSPLSAKYPSPPCKPQATHSSPLYSMDSTD----SFIIGDRVY 136
+ +S +K PS + A +S S + +G+RV
Sbjct: 433 SLEHRQSYPKKQNAISSNKKTMSKSPSLSSRASAGLNSSATSTANNSRCEGELRLGERVL 492
Query: 137 VGGTIPGKIAYIGETKFGPGDWAGKNRLDEPDR--------ARIRHC-PRASAISNAIRS 187
V G G I + G T F PG W G L++P + C PR + R
Sbjct: 493 VVGQRLGTIRFFGTTNFAPGYWYGI-ELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRV 551
Query: 188 TAIFSRLNALTRSPSPTSLGPPPHPRQFFSRPKAATHLTI-------QEVPHLMVSTQGN 240
+ L+ L+ S P R+ FS A++ I + L S
Sbjct: 552 QRVTDSLDTLSEISSNKQNHSYPGFRRSFSTTSASSQKEINRRNAFSKSKAALRRSWSST 611
Query: 241 PSHGRLPTLSEDEIRLGDRVIIRNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCG 300
P+ G + E ++L + G +V++ SS ++ G ++Y G T FA G W G
Sbjct: 612 PTAGGI----EGSVKLHE----------GSQVLLTSS--NEMGTVRYVGPTDFASGIWLG 655
Query: 301 VELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSPVQASGHASKNC 350
+EL GKNDGSV RYF C+P GV S+V+ + S +NC
Sbjct: 656 LELRSAKGKNDGSVGDKRYFTCKPNHGVLVRPSRVTYRGINGSKLVDENC 705
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 77/136 (56%), Gaps = 6/136 (4%)
Query: 203 PTSLGPPPHPRQFFSRPKAATHLTIQEVPHLMVSTQGNPSHGRLPTLSEDEIRLGDRVII 262
P + P P AAT I+++ V N S LP D + G ++
Sbjct: 223 PADVVPDPVDMPLEMADAAATAKEIKQMLLDAVPLSCNISKAMLPNY--DHVT-GKAMLT 279
Query: 263 RNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYC 322
++LGDRV+I G K G L++ G T FA G+W G+ELD+P GKN+GSV V+YF C
Sbjct: 280 SLGLKLGDRVVI---AGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGKVQYFKC 336
Query: 323 EPRFGVFAPVSKVSKS 338
P++G+FAP+SK+SK+
Sbjct: 337 APKYGIFAPLSKISKA 352
Score = 39.3 bits (90), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 122 SMDSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPD 168
+M ++ +GDRV + G G + + G T+F G WAG LDEP+
Sbjct: 276 AMLTSLGLKLGDRVVIAGQKVGTLRFCGTTEFASGQWAGI-ELDEPE 321
>sp|Q8CI96|CLIP4_MOUSE CAP-Gly domain-containing linker protein 4 OS=Mus musculus GN=Clip4
PE=1 SV=1
Length = 704
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 108/410 (26%), Positives = 169/410 (41%), Gaps = 80/410 (19%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLT-----RSPLLHL-SDR--PTSRNS 52
I LDEP GKN+G+VG +YF+C PK+GIF+ L++++ R H S R P +R+
Sbjct: 315 IELDEPEGKNNGSVGRVQYFKCAPKYGIFAPLSKISKLKDGRKTTTHTPSTRATPHARSQ 374
Query: 53 SVDEGRYSPFKKSSFDGLYSRKSSDGGL-------------------------------- 80
VD ++ S +S+ L
Sbjct: 375 KVDVAHFTSRVNSGLTTSKKETASESTLTLPPSEEPKTVAENDAAQPGSMSSSSSSSSLD 434
Query: 81 FSRTSPEDISTASPVSECSPLSAKYPSPPCKPQATHSSPLYSMDSTD----SFIIGDRVY 136
++ P+ ++T+S + +K PS P + A S S + + +G+RV
Sbjct: 435 HKQSYPKKLTTSSGGKKTL---SKSPSLPSRASAGLKSSATSAANNSHHEGALHLGERVL 491
Query: 137 VGGTIPGKIAYIGETKFGPGDWAGKNRLDEPDR--------ARIRHC-PRASAISNAIRS 187
V G G I + G T F PG W G L++P + C PR + R
Sbjct: 492 VVGQRVGTIKFFGTTNFAPGYWYGI-ELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRV 550
Query: 188 TAIFSRLNALTRSPSPTSLGPPPHPRQFFSRPKAATHLTI-------QEVPHLMVSTQGN 240
+ L+ L+ S P R+ FS A++ I + L S +
Sbjct: 551 QRLSDSLDTLSEISSNKQNHSYPGFRRSFSTTSASSQKEINRRNAFAKTKTTLRRSWSSS 610
Query: 241 PSHGRLPTLSEDEIRLGDRVIIRNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCG 300
+ G L E ++L + G +V++ SS ++ ++Y G T FA G W G
Sbjct: 611 TTAGGL----EGTVKLHE----------GSQVLLTSS--NEMATVRYVGPTDFASGIWLG 654
Query: 301 VELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSPVQASGHASKNC 350
+EL GKNDG+V RYF C+P +GV S+V+ + S +NC
Sbjct: 655 LELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRVTYRGISGSKLIDENC 704
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 55/72 (76%), Gaps = 3/72 (4%)
Query: 266 IRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPR 325
++LGDRV+I G K G L++ G T FA G+W G+ELD+P GKN+GSV V+YF C P+
Sbjct: 283 LKLGDRVVI---AGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPK 339
Query: 326 FGVFAPVSKVSK 337
+G+FAP+SK+SK
Sbjct: 340 YGIFAPLSKISK 351
Score = 39.7 bits (91), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 112 PQATHSSPLYSMDSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPD 168
P + H++ +M ++ +GDRV + G G + + G T+F G WAG LDEP+
Sbjct: 267 PNSDHTTS-RAMLTSLGLKLGDRVVIAGQKVGTLRFCGTTEFASGQWAGI-ELDEPE 321
>sp|Q66HD5|CLIP4_RAT CAP-Gly domain-containing linker protein 4 OS=Rattus norvegicus
GN=Clip4 PE=2 SV=1
Length = 599
Score = 94.7 bits (234), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 69/110 (62%), Gaps = 3/110 (2%)
Query: 228 QEVPHLMVSTQGNPSHGRLPTLSEDEIRLGDRVIIRNEIRLGDRVIIRSSQGSKSGVLKY 287
+E+ +++ + P TL +I ++ ++LGDRV+I G K G L++
Sbjct: 245 KEIKQMLLDSMPLPCTITKATLPNCDITTSKAMLTTLGLKLGDRVVI---AGQKVGTLRF 301
Query: 288 KGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSK 337
G T FA G+W G+ELD+P GKN+GSV V+YF C P++G+FAP+SK++K
Sbjct: 302 CGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIFAPLSKITK 351
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 52/72 (72%), Gaps = 3/72 (4%)
Query: 266 IRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPR 325
+RLG+RV++ G + G +K+ G T FA G W G+EL+ P GKNDGSV GV+YF C PR
Sbjct: 485 LRLGERVLV---VGQRVGTIKFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPR 541
Query: 326 FGVFAPVSKVSK 337
+G+FAP S+V +
Sbjct: 542 YGIFAPPSRVQR 553
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 88/205 (42%), Gaps = 48/205 (23%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLT-----RSPLLHL-SDRPT--SRNS 52
I LDEP GKN+G+VG +YF+C PK+GIF+ L+++T R + H S + T +R+
Sbjct: 315 IELDEPEGKNNGSVGRVQYFKCAPKYGIFAPLSKITKVKDGRKNITHTPSTKATLHARSQ 374
Query: 53 SVDEGRYSPFKKSSFDGLYSRKSSDGGLFSRTSP--EDISTASPVSECSP---------- 100
VD + S GL + K + + + P E++ T + P
Sbjct: 375 KVDVAHVTSKVNS---GLMTSKKENASESTLSLPRSEELKTVAKNDATQPGCISSSSSTS 431
Query: 101 ---------------------LSAKYPSPPCKPQA-THSSPLYSMDSTD---SFIIGDRV 135
+K PS P + A SS + ++T + +G+RV
Sbjct: 432 SLDHKQSHPKKLSTSSSSGKKTLSKSPSLPSRASAGLKSSTTSAANNTHREGALRLGERV 491
Query: 136 YVGGTIPGKIAYIGETKFGPGDWAG 160
V G G I + G T F PG W G
Sbjct: 492 LVVGQRVGTIKFFGTTNFAPGYWYG 516
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 31/41 (75%), Gaps = 3/41 (7%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIF---SRLNRLTRS 38
I L++P GKNDG+VGG +YF C P++GIF SR+ RL+ S
Sbjct: 517 IELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRVQRLSDS 557
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 16/143 (11%)
Query: 122 SMDSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPD--------RARIR 173
+M +T +GDRV + G G + + G T+F G WAG LDEP+ R +
Sbjct: 276 AMLTTLGLKLGDRVVIAGQKVGTLRFCGTTEFASGQWAGI-ELDEPEGKNNGSVGRVQYF 334
Query: 174 HC-PRASAISNAIRSTAIFSRLNALTRSPSPTSLGPPPHPRQFFSRPKAATHLTIQEVPH 232
C P+ + + T + +T +PS + H R S+ H+T +
Sbjct: 335 KCAPKYGIFAPLSKITKVKDGRKNITHTPSTKA---TLHAR---SQKVDVAHVTSKVNSG 388
Query: 233 LMVSTQGNPSHGRLPTLSEDEIR 255
LM S + N S L +E++
Sbjct: 389 LMTSKKENASESTLSLPRSEELK 411
>sp|Q5VT06|CE350_HUMAN Centrosome-associated protein 350 OS=Homo sapiens GN=CEP350 PE=1 SV=1
Length = 3117
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 50/72 (69%), Gaps = 3/72 (4%)
Query: 268 LGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFG 327
+GDRV+I + Q G+L++KG+T FA G W GVELD P G N+G+ DG+ YF C+ + G
Sbjct: 2499 IGDRVLIGNVQ---PGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHG 2555
Query: 328 VFAPVSKVSKSP 339
+FAP K+S P
Sbjct: 2556 IFAPPQKISHIP 2567
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 113 QATHSSPLYSMDSTDS---FIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPD 168
Q T S L S+ + D F IGDRV +G PG + + GET F G WAG LD+P+
Sbjct: 2478 QVTESPSLASVPTADELFDFHIGDRVLIGNVQPGILRFKGETSFAKGFWAGVE-LDKPE 2535
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFS 30
+ LD+P G N+GT G YF+C KHGIF+
Sbjct: 2529 VELDKPEGNNNGTYDGIAYFECKEKHGIFA 2558
>sp|Q54Z01|TBCB_DICDI Tubulin-specific chaperone B OS=Dictyostelium discoideum GN=tbcb
PE=3 SV=1
Length = 270
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 265 EIRLGDRVIIRSSQ----GSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYF 320
EI++GDR + S + G ++Y G F+ G W GVELD PLGKNDGSV G +YF
Sbjct: 186 EIKVGDRCKVISDDPTNYDERLGKVQYVGTVEFSSGVWIGVELDLPLGKNDGSVKGKQYF 245
Query: 321 YCEPRFGVFA 330
C P++G FA
Sbjct: 246 QCSPKYGCFA 255
Score = 45.1 bits (105), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSR 31
+ LD P GKNDG+V G +YFQC PK+G F++
Sbjct: 226 VELDLPLGKNDGSVKGKQYFQCSPKYGCFAK 256
>sp|Q20728|TBCB_CAEEL Tubulin-specific chaperone B OS=Caenorhabditis elegans GN=F53F4.3
PE=1 SV=1
Length = 229
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 266 IRLGDRV-IIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEP 324
I +G+R + +Q ++ G + Y G T F +G W GV+ D+P+GKNDGSV GVRYF C+P
Sbjct: 146 IMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCDP 205
Query: 325 RFGVFA 330
++G F
Sbjct: 206 KYGGFV 211
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 22/28 (78%)
Query: 4 DEPTGKNDGTVGGFRYFQCDPKHGIFSR 31
DEP GKNDG+V G RYF CDPK+G F R
Sbjct: 185 DEPVGKNDGSVAGVRYFDCDPKYGGFVR 212
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 112 PQATHSSPLYSMDSTDSFIIGDR--VYVGGTIP--GKIAYIGETKFGPGDWAGKNRLDEP 167
P S L + ++ + ++G+R V VG + G++AY+G TKF G W G + DEP
Sbjct: 130 PMENESDKL-NEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGV-KYDEP 187
>sp|Q9D1E6|TBCB_MOUSE Tubulin-folding cofactor B OS=Mus musculus GN=Tbcb PE=1 SV=2
Length = 244
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 230 VPHLMVSTQGNPSHGRLPTLSEDEI--RLGDRVIIRNEIRLGDRVIIRSSQGS-KSGVLK 286
V M ++ P + L E E RL + + I +G R +R+ S + G +
Sbjct: 121 VRSFMKRSKLGPYNEELRAQQEAEAAQRLSEEKAQASAISVGSRCEVRAPDHSLRRGTVM 180
Query: 287 YKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVS 336
Y G T F G W GV D+PLGKNDGSV+G RYF C+ ++G F S V+
Sbjct: 181 YVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVT 230
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 4 DEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLT 36
DEP GKNDG+V G RYF+C K+G F + + +T
Sbjct: 198 DEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVT 230
>sp|Q01397|DYNA_NEUCR Dynactin, 150 kDa isoform OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ro-3
PE=3 SV=3
Length = 1367
Score = 66.2 bits (160), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 266 IRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPR 325
+ +G ++ + G ++ ++Y G+T FA G W G+ELD+P GKNDGSV G RYF CE
Sbjct: 6 VAVGQKIELADGSG-RTAFVRYVGETAFAPGTWVGIELDEPSGKNDGSVQGERYFNCEMG 64
Query: 326 FGVF 329
+G+F
Sbjct: 65 YGMF 68
Score = 48.1 bits (113), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 58/132 (43%), Gaps = 18/132 (13%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSR---LNRLTRSPLL--------HLSDRPTS 49
I LDEP+GKNDG+V G RYF C+ +G+F R N + + P ++ RPTS
Sbjct: 40 IELDEPSGKNDGSVQGERYFNCEMGYGMFVRPTTFNVIAQPPPPPPPSTFRRSVTTRPTS 99
Query: 50 RNSSVDEGRYSPF-----KKSSFDGLYSRKSSDGGLFSRTSPEDISTASPVSECSPLSAK 104
N+S R +P K+ S + S TS T SP + + S+
Sbjct: 100 LNASTTR-RPAPVDSGLAKRMSLNAPSPSPGPRPSRTSSTSITRSPTRSPTKQLATASSS 158
Query: 105 -YPSPPCKPQAT 115
PS P T
Sbjct: 159 GNPSRSGTPSTT 170
Score = 31.6 bits (70), Expect = 9.8, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 145 IAYIGETKFGPGDWAGKNRLDEP 167
+ Y+GET F PG W G LDEP
Sbjct: 24 VRYVGETAFAPGTWVGI-ELDEP 45
>sp|Q9NQT8|KI13B_HUMAN Kinesin-like protein KIF13B OS=Homo sapiens GN=KIF13B PE=1 SV=1
Length = 1826
Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 39/58 (67%)
Query: 281 KSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKS 338
K+GV++Y G F +G W GVELD P GKNDGS+ G +YF C P +G+ S+V ++
Sbjct: 1713 KTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVRRA 1770
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 30/38 (78%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRS 38
+ LD P+GKNDG++GG +YF+C+P +G+ R +R+ R+
Sbjct: 1733 VELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVRRA 1770
>sp|O42667|SSM4_SCHPO Microtubule-associated protein ssm4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssm4 PE=1 SV=1
Length = 670
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 51/88 (57%), Gaps = 8/88 (9%)
Query: 266 IRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPR 325
+ +GD V+IR + G++++ G T F G W GVEL + GKNDGSV G RYF CE
Sbjct: 4 LSVGDEVLIRG----ELGIVRFAGSTDFESGIWLGVELLNGKGKNDGSVKGKRYFSCEKG 59
Query: 326 FGVF--APVSKVSKSP--VQASGHASKN 349
G+F A S V K P V++ S+N
Sbjct: 60 KGIFVRACSSNVMKRPSVVKSRKKGSEN 87
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 8 GKNDGTVGGFRYFQCDPKHGIFSR 31
GKNDG+V G RYF C+ GIF R
Sbjct: 42 GKNDGSVKGKRYFSCEKGKGIFVR 65
>sp|Q99426|TBCB_HUMAN Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2
Length = 244
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 266 IRLGDRVIIRSS-QGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEP 324
I +G R +R++ Q + G + Y G T F G W GV D+PLGKNDGSV+G RYF C+
Sbjct: 159 IPVGSRCEVRAAGQSPRRGTVMYVGLTDFKPGYWIGVRYDEPLGKNDGSVNGKRYFECQA 218
Query: 325 RFGVFA 330
++G F
Sbjct: 219 KYGAFV 224
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 4 DEPTGKNDGTVGGFRYFQCDPKHGIFSR 31
DEP GKNDG+V G RYF+C K+G F +
Sbjct: 198 DEPLGKNDGSVNGKRYFECQAKYGAFVK 225
>sp|Q6PCJ1|DCTN1_XENLA Dynactin subunit 1 OS=Xenopus laevis GN=dctn1 PE=2 SV=1
Length = 1232
Score = 63.5 bits (153), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 266 IRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPR 325
+++G RV + +G + G + Y G T FA G+W GV LDD GKNDG+V G RYF CE
Sbjct: 10 LKVGSRVEV-IGKGYR-GTVAYVGATLFATGKWVGVILDDSKGKNDGTVQGRRYFTCEEN 67
Query: 326 FGVFAPVSKV 335
G+F S++
Sbjct: 68 HGIFVRQSQI 77
Score = 50.4 bits (119), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSPLLHLSDRPTSRNSSVDEGRYS 60
++LD+ GKNDGTV G RYF C+ HGIF R +++ + P + + +G
Sbjct: 43 VILDDSKGKNDGTVQGRRYFTCEENHGIFVRQSQIQVIEDGADTTSPETPEPTASKG--- 99
Query: 61 PFKKSSFDGLYSRKSSDGGLFSRTSPEDISTASPVSECSPLSAKYPSPPCK 111
KK D + + KSS L +R S S+ + + C +S+ PS P +
Sbjct: 100 -LKK---DVMETPKSSK--LPTRPSSSAASSGTASASCGEISSSEPSTPAQ 144
>sp|P33420|NIP80_YEAST Protein NIP100 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NIP100 PE=1 SV=2
Length = 868
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 4/55 (7%)
Query: 266 IRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYF 320
I L D V++ +G +K+ G+T FA G W G+ELD PLGKNDGS +G+RYF
Sbjct: 15 ISLQDTVLVNEMKGR----VKFIGETQFAKGIWYGIELDKPLGKNDGSANGIRYF 65
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHG 27
I LD+P GKNDG+ G RYF D K
Sbjct: 46 IELDKPLGKNDGSANGIRYFDIDLKKA 72
>sp|Q5E951|TBCB_BOVIN Tubulin-folding cofactor B OS=Bos taurus GN=TBCB PE=2 SV=1
Length = 244
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 266 IRLGDRVIIRS-SQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEP 324
I +G R +R+ Q + G + Y G T F G W G+ D+PLGKNDGSV+G RYF C+
Sbjct: 159 IPVGSRCEVRTPGQPPRRGTVMYVGLTDFKPGYWIGIRYDEPLGKNDGSVNGKRYFECQA 218
Query: 325 RFGVFAPVSKVS 336
++G F S V+
Sbjct: 219 KYGAFVKPSVVT 230
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSR 31
I DEP GKNDG+V G RYF+C K+G F +
Sbjct: 195 IRYDEPLGKNDGSVNGKRYFECQAKYGAFVK 225
>sp|P34531|YM92_CAEEL Uncharacterized protein M01A8.2 OS=Caenorhabditis elegans
GN=M01A8.2 PE=4 SV=4
Length = 937
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 283 GVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVS 336
G L+Y G + DG +CG+EL +P GK+DG+ GV YF P G+FAP+ +V+
Sbjct: 33 GFLRYVGPIHGKDGMFCGIELLEPNGKHDGTFQGVSYFIATPYHGIFAPIFRVT 86
Score = 40.4 bits (93), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 23/36 (63%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLT 36
I L EP GK+DGT G YF P HGIF+ + R+T
Sbjct: 51 IELLEPNGKHDGTFQGVSYFIATPYHGIFAPIFRVT 86
>sp|P28023|DCTN1_RAT Dynactin subunit 1 OS=Rattus norvegicus GN=Dctn1 PE=2 SV=2
Length = 1280
Score = 58.9 bits (141), Expect = 6e-08, Method: Composition-based stats.
Identities = 42/117 (35%), Positives = 56/117 (47%), Gaps = 23/117 (19%)
Query: 241 PSHGRLPT-LSEDEIRLGDRVIIRNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWC 299
PS R+ T S +R+G RV + I G R G + Y G T FA G+W
Sbjct: 13 PSGSRMSTEASARPLRVGSRVEV---IGKGHR-----------GTVAYVGATLFATGKWV 58
Query: 300 GVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKV--------SKSPVQASGHASK 348
GV LD+ GKNDG+V G +YF C+ G+F S++ + SP ASK
Sbjct: 59 GVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVFEDGADTTSPETPDSSASK 115
Score = 52.4 bits (124), Expect = 5e-06, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRL--------TRSPLLHLSDRPTSRNS 52
++LDE GKNDGTV G +YF CD HGIF R +++ T SP + P S S
Sbjct: 60 VILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVFEDGADTTSP-----ETPDSSAS 114
Query: 53 SV--DEGRYSPFKKSSFDGLYSRKSSDGGLFSRTSPEDISTAS 93
+ EG + K S GL +K+ + P+ AS
Sbjct: 115 KILKREGADAAAKTSKLRGLKPKKAPTARKTTTRRPKPTRPAS 157
>sp|Q14203|DCTN1_HUMAN Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=1 SV=3
Length = 1278
Score = 58.5 bits (140), Expect = 8e-08, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 10/91 (10%)
Query: 266 IRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPR 325
+R+G RV + +G + G + Y G T FA G+W GV LD+ GKNDG+V G +YF C+
Sbjct: 27 LRVGSRVEV-IGKGHR-GTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEG 84
Query: 326 FGVFAPVSKV--------SKSPVQASGHASK 348
G+F S++ + SP ASK
Sbjct: 85 HGIFVRQSQIQVFEDGADTTSPETPDSSASK 115
Score = 53.5 bits (127), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 57/134 (42%), Gaps = 28/134 (20%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRL--------TRSPLLHLSDRPTSRNS 52
++LDE GKNDGTV G +YF CD HGIF R +++ T SP + P S S
Sbjct: 60 VILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVFEDGADTTSP-----ETPDSSAS 114
Query: 53 SV--DEGRYSPFKKSSFDGLYSRKSSDGGLFSR-----TSPEDISTASPVSECSP----- 100
V EG + K S GL +K+ + T P A S P
Sbjct: 115 KVLKREGTDTTAKTSKLRGLKPKKAPTARKTTTRRPKPTRPASTGVAGASSSLGPSGSAS 174
Query: 101 ---LSAKYPSPPCK 111
LS+ PS P +
Sbjct: 175 AGELSSSEPSTPAQ 188
>sp|O08788|DCTN1_MOUSE Dynactin subunit 1 OS=Mus musculus GN=Dctn1 PE=1 SV=3
Length = 1281
Score = 58.5 bits (140), Expect = 8e-08, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 10/91 (10%)
Query: 266 IRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPR 325
+R+G RV + +G + G + Y G T FA G+W GV LD+ GKNDG+V G +YF C+
Sbjct: 27 LRVGSRVEV-IGKGHR-GTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEG 84
Query: 326 FGVFAPVSKV--------SKSPVQASGHASK 348
G+F S++ + SP ASK
Sbjct: 85 HGIFVRQSQIQVFEDGADTTSPETPDSSASK 115
Score = 52.4 bits (124), Expect = 5e-06, Method: Composition-based stats.
Identities = 37/103 (35%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRL--------TRSPLLHLSDRPTSRNS 52
++LDE GKNDGTV G +YF CD HGIF R +++ T SP + P S S
Sbjct: 60 VILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVFEDGADTTSP-----ETPDSSAS 114
Query: 53 SV--DEGRYSPFKKSSFDGLYSRKSSDGGLFSRTSPEDISTAS 93
V EG + K S GL +K+ + P+ AS
Sbjct: 115 KVLKREGADAAAKTSKLRGLKPKKAPTARKTTTRRPKPTRPAS 157
>sp|P35458|DCTN1_CHICK Dynactin subunit 1 OS=Gallus gallus GN=DCTN1 PE=2 SV=2
Length = 1224
Score = 55.8 bits (133), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 266 IRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPR 325
+++G RV + +G + G + Y G T A G+W GV LD+ GKNDG+V G +YF CE
Sbjct: 28 LKVGSRVEV-IGKGHR-GTVAYVGATLXATGKWVGVILDEAKGKNDGTVQGRKYFTCEEN 85
Query: 326 FGVFAPVSKV 335
G+F S++
Sbjct: 86 HGIFVRQSQI 95
Score = 50.1 bits (118), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 57/142 (40%), Gaps = 11/142 (7%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSPLLHLSDRPTSRNSSVDEGRYS 60
++LDE GKNDGTV G +YF C+ HGIF R +S + D + + E
Sbjct: 61 VILDEAKGKNDGTVQGRKYFTCEENHGIFVR-----QSQIQVFEDGADTTSPETPESAAL 115
Query: 61 PFKKSSFDGLYSRKSSDGGLFSRTSPEDISTASPVSECSPLSAKYPSPPCKPQATHSSPL 120
K +SR ++ G P+ + P +P SA S P + S+
Sbjct: 116 KVPKR-----HSRXAAKGSKLRGAKPKKTTARRPKPTRTPTSAP-SSGTAGPSGSASASG 169
Query: 121 YSMDSTDSFIIGDRVYVGGTIP 142
M S++ V IP
Sbjct: 170 GEMSSSEPSTPAQTPLVAPVIP 191
>sp|P13496|DCTN1_DROME Dynactin subunit 1 OS=Drosophila melanogaster GN=Gl PE=1 SV=2
Length = 1265
Score = 55.8 bits (133), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 14/81 (17%)
Query: 249 LSEDEIRLGDRVIIRNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLG 308
+SE +++G RV + + LG + Y G T FA G+W GV LD+P G
Sbjct: 1 MSEKNLKVGARVELTGKDLLG--------------TVAYVGMTSFAVGKWVGVVLDEPKG 46
Query: 309 KNDGSVDGVRYFYCEPRFGVF 329
KN GS+ G +YF C+ G+F
Sbjct: 47 KNSGSIKGQQYFQCDENCGMF 67
Score = 48.5 bits (114), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSPLLHLSDRPTSRNSSVDEGRYS 60
+VLDEP GKN G++ G +YFQCD G+F R +L L P SR S D +
Sbjct: 39 VVLDEPKGKNSGSIKGQQYFQCDENCGMFVRPTQLRL-----LEAAPGSRRSIEDVSGAT 93
Query: 61 P 61
P
Sbjct: 94 P 94
>sp|Q10235|ALP11_SCHPO Cell polarity protein alp11 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=alp11 PE=1 SV=1
Length = 234
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 279 GSKSGVLKYKGDT--YFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVS 336
G + G ++Y G D W GVE D+P+GKNDG+V G RYF + + G F S+V
Sbjct: 162 GERYGTIRYIGLVPEINNDNLWVGVEFDEPVGKNDGTVSGKRYFNAKNKHGSFLRSSEVE 221
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 20/31 (64%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSR 31
+ DEP GKNDGTV G RYF KHG F R
Sbjct: 186 VEFDEPVGKNDGTVSGKRYFNAKNKHGSFLR 216
>sp|P11709|BIK1_YEAST Nuclear fusion protein BIK1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BIK1 PE=1 SV=1
Length = 440
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 283 GVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCE-PRFGVFAPVSKVSKSPVQ 341
G LKY G G + GV+L +GKNDGS G +YF E P+ G+F + KV+ +
Sbjct: 20 GQLKYVGPVDTKAGMFAGVDLLANIGKNDGSFMGKKYFQTEYPQSGLFIQLQKVASLIEK 79
Query: 342 AS-GHASKNCVVHP 354
AS S+ + P
Sbjct: 80 ASISQTSRRTTMEP 93
>sp|Q5U378|TBCE_DANRE Tubulin-specific chaperone E OS=Danio rerio GN=tbce PE=2 SV=2
Length = 521
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 283 GVLKYKGDTYFADGEWCGVELDDP-LGKNDGSVDGVRYFYC-EPRFGVFAPVSKVS 336
G ++Y G G W GVE D P GK+DGS DGVRYF C P G F K S
Sbjct: 18 GTVRYVGPVPPTAGVWLGVEWDHPERGKHDGSHDGVRYFTCRHPTGGSFVRPQKAS 73
>sp|Q55CN0|TBCE_DICDI Tubulin-specific chaperone E OS=Dictyostelium discoideum GN=tbce
PE=3 SV=1
Length = 525
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 268 LGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPL-GKNDGSVDGVRYFYCEPR- 325
+G+RV + GS G ++Y+G +G W G+E DDP GK+ G+V G +YF C +
Sbjct: 15 IGERV--KGDDGS-VGTIRYQGKVDGFEGNWYGIEWDDPKRGKHQGTVKGKQYFKCINKG 71
Query: 326 FGVFAPVSKVSK 337
G F K+ K
Sbjct: 72 SGSFMKYEKLIK 83
>sp|Q8CIV8|TBCE_MOUSE Tubulin-specific chaperone E OS=Mus musculus GN=Tbce PE=1 SV=1
Length = 524
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 296 GEWCGVELDDP-LGKNDGSVDGVRYFYC-EPRFGVFAPVSKVS 336
G W GVE D+P GK+DGS +G YF C P G F SKV+
Sbjct: 34 GLWLGVEWDNPERGKHDGSHEGTMYFKCRHPTGGSFVRPSKVN 76
>sp|P53904|TBCB_YEAST Tubulin-specific chaperone B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ALF1 PE=1 SV=1
Length = 254
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 281 KSGVLKYKG----DTYFADGEWCGVELDDPLGKNDGSVDGVRYF 320
+ +L+Y G D G WCGVE + GKNDG ++GV F
Sbjct: 173 REAILRYVGPLPLDVM---GTWCGVEFPEAAGKNDGRINGVTLF 213
>sp|Q5U508|TBCE_XENLA Tubulin-specific chaperone E OS=Xenopus laevis GN=tbce PE=2 SV=1
Length = 522
Score = 35.8 bits (81), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 283 GVLKYKGDTYFADGEWCGVELDDPL-GKNDGSVDGVRYFYC-EPRFGVFAPVSKVS 336
++Y G+ G W GVE D+ L GK++G+ +G +YF C P G F + K +
Sbjct: 21 ATVRYVGNVPPTPGLWLGVEWDNHLRGKHNGTHEGTKYFTCSHPTGGSFIRLKKAN 76
>sp|Q5RBD9|TBCE_PONAB Tubulin-specific chaperone E OS=Pongo abelii GN=TBCE PE=2 SV=1
Length = 527
Score = 35.4 bits (80), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 268 LGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDP-LGKNDGSVDGVRYFYC-EPR 325
+G RV + + +++ G G W GVE D+P GK+DGS +G YF C P
Sbjct: 10 IGQRVEVNGEHAT----VRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFQCRHPT 65
Query: 326 FGVFAPVSKVS 336
G F +KV+
Sbjct: 66 GGSFIRPNKVN 76
>sp|Q32KS0|TBCE_BOVIN Tubulin-specific chaperone E OS=Bos taurus GN=TBCE PE=2 SV=1
Length = 528
Score = 35.4 bits (80), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 296 GEWCGVELDDP-LGKNDGSVDGVRYFYC-EPRFGVFAPVSKVS 336
G W GVE D+P GK+DGS +G YF C P G F KV+
Sbjct: 34 GLWLGVEWDNPERGKHDGSHEGTVYFKCRHPTAGSFIRPHKVN 76
>sp|Q15813|TBCE_HUMAN Tubulin-specific chaperone E OS=Homo sapiens GN=TBCE PE=1 SV=1
Length = 527
Score = 35.0 bits (79), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 296 GEWCGVELDDP-LGKNDGSVDGVRYFYC-EPRFGVFAPVSKVS 336
G W GVE D+P GK+DGS +G YF C P G F +KV+
Sbjct: 34 GPWLGVEWDNPERGKHDGSHEGTVYFKCRHPTGGSFIRPNKVN 76
>sp|Q5FVQ9|TBCE_RAT Tubulin-specific chaperone E OS=Rattus norvegicus GN=Tbce PE=2 SV=1
Length = 524
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 296 GEWCGVELDDP-LGKNDGSVDGVRYFYC 322
G W GVE D+P GK+DGS +G YF C
Sbjct: 34 GLWLGVEWDNPERGKHDGSHEGTMYFKC 61
>sp|P79065|TIP1_SCHPO Tip elongation protein 1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=tip1 PE=1 SV=1
Length = 461
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 283 GVLKYKGDTYFADGEWCGVELD---DPLGKNDGSVDGVRYFYCE--PRFGVFAPVSK 334
G ++Y G+ G + G+EL GKN G VDG YF + + G+F P K
Sbjct: 16 GFVRYAGEVENRKGVYVGLELLPEFAEFGKNRGVVDGREYFKTKNNEKTGIFVPFDK 72
>sp|Q66H62|CYLD_RAT Ubiquitin carboxyl-terminal hydrolase CYLD OS=Rattus norvegicus
GN=Cyld PE=2 SV=1
Length = 953
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 18/92 (19%)
Query: 261 IIRNEIRLGD----------RVIIRSSQGSKSGVLKYKGDTYF---ADGEWCGVELDDPL 307
+ RN IRL RV +RS + GV++++G G + GVEL +
Sbjct: 112 LFRNRIRLSKGLQVDVGSPVRVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEE- 170
Query: 308 GKNDGSVDGV----RYFYCEPRFGVFAPVSKV 335
G+ G DGV + F C+ GVF + K+
Sbjct: 171 GRGQGFTDGVYQGKQLFQCDEDCGVFVALDKL 202
>sp|Q9I7F7|PR2_DROME Tyrosine-protein kinase PR2 OS=Drosophila melanogaster GN=PR2 PE=1
SV=3
Length = 1337
Score = 32.0 bits (71), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 55 DEGRYSPFKKSSFDGLYSRKSSDGGLFSRTSPEDISTASPVSECSPLSAKYPSPPCKPQA 114
++G+ + F+ + GLY +D L + TA+P S CS L +++ P P
Sbjct: 1108 NKGKDAEFEATQISGLYV---NDDELRNLDIESSRRTATPCSSCSALESEHSQPDALPST 1164
Query: 115 THSSPLYSMDSTDSFIIGDRVY 136
S + S D+ + G+ ++
Sbjct: 1165 ESVSEVSRFSSVDNELAGNALF 1186
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,018,055
Number of Sequences: 539616
Number of extensions: 6600662
Number of successful extensions: 19202
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 18996
Number of HSP's gapped (non-prelim): 202
length of query: 365
length of database: 191,569,459
effective HSP length: 119
effective length of query: 246
effective length of database: 127,355,155
effective search space: 31329368130
effective search space used: 31329368130
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)