Query psy4533
Match_columns 365
No_of_seqs 430 out of 1478
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 19:35:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4533.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4533hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4568|consensus 99.9 6E-28 1.3E-32 255.0 7.1 199 122-339 11-225 (664)
2 KOG3206|consensus 99.9 4.1E-26 8.8E-31 210.5 3.2 136 190-342 88-226 (234)
3 PF01302 CAP_GLY: CAP-Gly doma 99.9 6.1E-25 1.3E-29 171.8 8.1 68 268-336 1-69 (69)
4 KOG4568|consensus 99.9 1.4E-22 3.1E-27 214.4 5.7 167 1-202 50-226 (664)
5 COG5244 NIP100 Dynactin comple 99.8 6.2E-19 1.3E-23 178.6 7.2 67 265-335 3-69 (669)
6 PF01302 CAP_GLY: CAP-Gly doma 99.7 1.3E-17 2.7E-22 130.6 6.3 58 131-198 1-69 (69)
7 KOG0971|consensus 99.7 3E-17 6.5E-22 175.3 6.9 77 263-341 3-79 (1243)
8 KOG3207|consensus 99.6 4.8E-16 1E-20 157.6 5.8 90 265-360 2-93 (505)
9 KOG3206|consensus 99.6 1.4E-15 3.1E-20 141.0 6.4 69 127-205 147-227 (234)
10 COG5244 NIP100 Dynactin comple 99.4 3E-13 6.6E-18 137.7 6.3 57 129-196 4-68 (669)
11 KOG0971|consensus 99.4 6.6E-13 1.4E-17 142.6 7.5 68 126-203 3-79 (1243)
12 KOG3556|consensus 99.1 1.5E-10 3.2E-15 119.4 7.4 80 264-343 234-320 (724)
13 KOG3207|consensus 99.0 2.5E-10 5.3E-15 116.5 5.8 64 128-201 2-74 (505)
14 KOG0241|consensus 99.0 6.3E-10 1.4E-14 120.6 6.2 75 260-341 1625-1699(1714)
15 KOG3556|consensus 98.1 5.1E-06 1.1E-10 86.6 6.0 65 126-200 233-315 (724)
16 KOG0241|consensus 97.8 3.2E-05 6.9E-10 85.2 5.9 60 126-199 1628-1695(1714)
17 PRK10708 hypothetical protein; 94.4 0.15 3.2E-06 39.3 6.1 55 129-194 1-60 (62)
18 PF10781 DSRB: Dextransucrase 94.3 0.17 3.7E-06 39.0 6.1 56 129-195 1-61 (62)
19 PTZ00243 ABC transporter; Prov 93.3 0.085 1.8E-06 62.5 4.5 59 263-322 122-196 (1560)
20 PF10781 DSRB: Dextransucrase 88.0 3.1 6.7E-05 32.2 7.0 58 266-333 1-61 (62)
21 PRK10708 hypothetical protein; 87.4 3.6 7.7E-05 31.9 7.1 58 266-333 1-61 (62)
22 PF09926 DUF2158: Uncharacteri 65.2 22 0.00048 26.8 5.5 47 266-314 1-47 (53)
23 PTZ00243 ABC transporter; Prov 63.0 7.4 0.00016 46.7 4.0 42 125-167 121-166 (1560)
24 PF00924 MS_channel: Mechanose 36.9 25 0.00055 31.6 2.3 25 126-151 58-82 (206)
25 PF14801 GCD14_N: tRNA methylt 36.4 21 0.00045 27.3 1.3 49 264-314 4-52 (54)
26 TIGR00739 yajC preprotein tran 28.5 54 0.0012 26.7 2.6 33 126-165 35-67 (84)
27 PF09926 DUF2158: Uncharacteri 27.1 1.6E+02 0.0035 22.2 4.8 40 129-169 1-41 (53)
28 PRK05886 yajC preprotein trans 26.6 98 0.0021 26.7 4.0 32 127-165 37-68 (109)
29 KOG3477|consensus 24.5 10 0.00022 31.8 -2.3 18 17-34 56-73 (97)
30 PF13437 HlyD_3: HlyD family s 23.6 1.9E+02 0.004 23.1 5.0 41 262-302 46-90 (105)
31 PF13785 DUF4178: Domain of un 23.3 1.5E+02 0.0034 25.1 4.7 43 129-176 1-47 (140)
32 TIGR02266 gmx_TIGR02266 Myxoco 22.7 2E+02 0.0043 22.6 4.9 45 262-306 33-83 (96)
33 COG1862 YajC Preprotein transl 22.2 87 0.0019 26.5 2.8 25 127-151 42-66 (97)
34 PF07238 PilZ: PilZ domain; I 22.0 1.3E+02 0.0029 22.9 3.7 41 263-305 42-87 (102)
35 PRK06531 yajC preprotein trans 21.9 81 0.0017 27.4 2.6 31 127-161 35-65 (113)
36 CHL00141 rpl24 ribosomal prote 21.9 1.2E+02 0.0026 24.7 3.5 28 263-290 6-34 (83)
37 TIGR00739 yajC preprotein tran 21.8 1.7E+02 0.0037 23.8 4.4 33 263-304 35-67 (84)
38 PRK10334 mechanosensitive chan 21.2 88 0.0019 30.8 3.1 25 126-151 127-151 (286)
39 PRK12281 rplX 50S ribosomal pr 21.1 1.3E+02 0.0028 24.2 3.5 28 264-291 5-33 (76)
40 PRK05585 yajC preprotein trans 20.7 90 0.0019 26.6 2.6 33 126-165 50-82 (106)
41 PRK05886 yajC preprotein trans 20.0 2E+02 0.0043 24.9 4.6 33 263-304 36-68 (109)
No 1
>KOG4568|consensus
Probab=99.94 E-value=6e-28 Score=255.01 Aligned_cols=199 Identities=43% Similarity=0.709 Sum_probs=146.0
Q ss_pred cCCCCCCceeCcEEEECCcccEEEEEeeeCCCCCCceEEEeeccCCCC--------eeEEecCCCCcccccccceeEEEe
Q psy4533 122 SMDSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPDR--------ARIRHCPRASAISNAIRSTAIFSR 193 (365)
Q Consensus 122 ~~~~~~~~~vG~rV~v~g~~~G~vryiG~~~~~~G~W~GVeelDep~G--------~rYF~C~~~~~~~~~~p~~G~Fvr 193 (365)
..+....++||++|||++..+|.|||+|+++|++|+|+|| +||+|.| +|||.|.+ ..|+|.+
T Consensus 11 q~~~~~~~~ig~~v~v~~~~~G~v~y~G~t~f~~G~w~Gv-eL~~p~GKNdGsv~G~rYF~ce~---------~kgif~~ 80 (664)
T KOG4568|consen 11 QLDDLGQFIIGRRVWVNNVELGFVRYAGETDFAKGIWAGV-ELLEPKGKNDGSVHGKRYFQCEP---------KKGIFFR 80 (664)
T ss_pred hhhhhhhhhhcceEEecCCcceeeeeccCcccccceeece-eeccccCCCCcccchhhhhcccc---------ccceeec
Confidence 3466789999999999998899999999999999999999 8999975 99999999 9999999
Q ss_pred CCceeecCCCCCC-CCCCCC-cccccCCccccc---cccccccccccccCCC---CCCCCCCCCchhhhhccccccccCC
Q psy4533 194 LNALTRSPSPTSL-GPPPHP-RQFFSRPKAATH---LTIQEVPHLMVSTQGN---PSHGRLPTLSEDEIRLGDRVIIRNE 265 (365)
Q Consensus 194 ~skV~k~~~~~~t-~~~dst-rs~~s~~k~~~~---~~~~~~~~~~~s~~~~---~~~~s~p~~s~~~~~~~~~~~~~~~ 265 (365)
..+......+... .+++.+ .++.+. ..+.. +...+.. ++.+-... ++..+.+++++ .+........
T Consensus 81 ~~~~t~~~~~~~q~~~~~~~~~~~~~~-~~~~~~sp~~~~~ip-~~~s~~~~~~kss~~s~s~~~~----~~~s~~~~~~ 154 (664)
T KOG4568|consen 81 QGRGTASKNEKGQSSPPPSVPNSRLSS-AAAASTSPNLQSSIP-LLASLSNTIVKSSLESYSTLSS----TGKSPTSMLG 154 (664)
T ss_pred ccccccccccccccCCCCCCCchhhcc-ccccccCcccccccc-ccccccccccccccCCCCCccc----ccccccCccc
Confidence 9988877665432 233322 222222 11111 0111110 01110000 00001111111 1222355788
Q ss_pred CccCCEEEEEcCCCCceEEEEEeccccCCCCceEEEEecCCCCCCCceECCEEeeecCCCCeeeEecCCcccCC
Q psy4533 266 IRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSP 339 (365)
Q Consensus 266 l~VGdRV~V~~~~g~~~GtVRyiG~~~~~~G~wvGVELDep~GknDGsv~G~rYF~C~p~~GiFV~~~kV~~~~ 339 (365)
+.|||||.+. ++..|++||+|.+.|+.|-|+|||||+|.|+|||++.+++||+|++.||+|.+.++|.+..
T Consensus 155 l~v~dr~l~~---gq~~~~~r~~~~t~fa~g~w~~~elde~~~~~d~sv~k~~~~~~k~ky~~f~~v~kv~~~~ 225 (664)
T KOG4568|consen 155 LRVGDRVLVG---GQKSGTLRYSGHTKFASGSWLGVELDEPVGKNDGSVGKVRYFQCKPKYGKFAPVQKVFKIE 225 (664)
T ss_pred cccccceeec---CcccchhhhhccccccCCcccchhcccccccccccccccccccCcchhcchhHHHHHhhcc
Confidence 9999999995 6899999999999999999999999999999999999999999999999999999998873
No 2
>KOG3206|consensus
Probab=99.92 E-value=4.1e-26 Score=210.51 Aligned_cols=136 Identities=28% Similarity=0.471 Sum_probs=111.3
Q ss_pred EEEeCCceeecCCCCC--CCCCCCCcccccCCccccccccccccccccccCCCCCCCCCCCCchhhhhccccccccCCCc
Q psy4533 190 IFSRLNALTRSPSPTS--LGPPPHPRQFFSRPKAATHLTIQEVPHLMVSTQGNPSHGRLPTLSEDEIRLGDRVIIRNEIR 267 (365)
Q Consensus 190 ~Fvr~skV~k~~~~~~--t~~~dstrs~~s~~k~~~~~~~~~~~~~~~s~~~~~~~~s~p~~s~~~~~~~~~~~~~~~l~ 267 (365)
-|-+.+.|+++.++++ .+++|++|.|+.+++.++++..++.+..+.+... +.+. .....+.
T Consensus 88 ~~~d~s~veky~iSee~Y~qRtdSvr~~kk~~~~gryn~~~~~q~ea~~~~~---------~~e~--------~~~~~i~ 150 (234)
T KOG3206|consen 88 NTEDESIVEKYEISEEDYLQRTDSVRRFKKKHGYGRYNAEEQAQAEAEAKQD---------LAEE--------RAQATIA 150 (234)
T ss_pred cccccccceeeecCHHHHhhhhHHHHHHHHHhcccccchhhhhHHHHHhHHH---------HHHH--------HHhhccc
Confidence 3677888999999976 6789999999999999888877776543332211 1111 2233499
Q ss_pred cCCEEEEEcC-CCCceEEEEEeccccCCCCceEEEEecCCCCCCCceECCEEeeecCCCCeeeEecCCcccCCCcc
Q psy4533 268 LGDRVIIRSS-QGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSPVQA 342 (365)
Q Consensus 268 VGdRV~V~~~-~g~~~GtVRyiG~~~~~~G~wvGVELDep~GknDGsv~G~rYF~C~p~~GiFV~~~kV~~~~~~~ 342 (365)
||+||+|... +..++|+|||+|+++|++|.|+|||+|||+|||||+|+|+|||+|.|+||-||+|..|..+.-..
T Consensus 151 vG~rCeVtv~G~~~Rrg~vrYvG~~~~k~G~wiGVeydEplGKnDGsv~G~ryF~c~p~yGgfVrP~~V~Vgdfpe 226 (234)
T KOG3206|consen 151 VGRRCEVTVPGQAPRRGTVRYVGPLEFKPGYWIGVEYDEPLGKNDGSVNGKRYFECAPKYGGFVRPRAVTVGDFPE 226 (234)
T ss_pred cCCeeEEecCCCCCcceEEEEecccCCCCceEEEEecCCccccCCCcccceEeeecCCccCCccccceeeecCCCh
Confidence 9999999853 34699999999999999999999999999999999999999999999999999999998865443
No 3
>PF01302 CAP_GLY: CAP-Gly domain; InterPro: IPR000938 Cytoskeleton-associated proteins (CAP) are made of three distinct parts, an N-terminal section that is most probably globular and contains the CAP-Gly domain, a large central region predicted to be in an alpha-helical coiled-coil conformation and, finally, a short C-terminal globular domain. The CAP-Gly domain is a conserved, glycine-rich domain of about 42 residues found in some CAPs []. Proteins known to contain this domain include restin (also known as cytoplasmic linker protein-170 or CLIP-170), a 160 kDa protein associated with intermediate filaments and that links endocytic vesicles to microtubules; vertebrate dynactin (150 kDa dynein-associated polypeptide; DAP) and Drosophila glued, a major component of activator I; yeast protein BIK1, which seems to be required for the formation or stabilisation of microtubules during mitosis and for spindle pole body fusion during conjugation; yeast protein NIP100 (NIP80); human protein CKAP1/TFCB; Schizosaccharomyces pombe protein alp11 and Caenorhabditis elegans hypothetical protein F53F4.3. The latter proteins contain a N-terminal ubiquitin domain and a C-terminal CAP-Gly domain. The crystal structure of the CAP-Gly domain of C. elegans F53F4.3 protein, solved by single wavelength sulphur-anomalous phasing, revealed a novel protein fold containing three beta-sheets. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove. Residues in the groove are highly conserved as measured from the information content of the aligned sequences. The C-terminal tail of another molecule in the crystal is bound in this groove []. ; PDB: 2CP6_A 2E4H_A 2E3H_A 3E2U_B 2HL3_B 3TQ7_Q 2HKQ_B 2HQH_A 2HKN_B 2HL5_C ....
Probab=99.91 E-value=6.1e-25 Score=171.81 Aligned_cols=68 Identities=50% Similarity=0.986 Sum_probs=60.9
Q ss_pred cCCEEEEEcCCCCceEEEEEecccc-CCCCceEEEEecCCCCCCCceECCEEeeecCCCCeeeEecCCcc
Q psy4533 268 LGDRVIIRSSQGSKSGVLKYKGDTY-FADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVS 336 (365)
Q Consensus 268 VGdRV~V~~~~g~~~GtVRyiG~~~-~~~G~wvGVELDep~GknDGsv~G~rYF~C~p~~GiFV~~~kV~ 336 (365)
|||||+| .......|+|||||+++ ++.|+|+|||||+|.|+|||+++|+|||+|+|+||+||++++|+
T Consensus 1 VG~rV~v-~~~~~~~G~vryiG~~~~~~~g~~vGVEld~~~G~~dGt~~G~rYF~c~~~~G~Fv~~~~v~ 69 (69)
T PF01302_consen 1 VGDRVRV-DDPGGRRGTVRYIGPVPGFKSGIWVGVELDEPRGKNDGTVKGKRYFECPPNHGIFVRPSKVE 69 (69)
T ss_dssp TTSEEEE-SSTTTEEEEEEEEEE-SSSSSSEEEEEEESSSTSSBSSEETTEESS-SSTTTEEEEEGGGE-
T ss_pred CCCEEEE-eeCCCCEEEEEEEeeCCCCCCCEEEEEEEcCCCCCCCcEECCEEEeeeCCCCEEEecHHHCC
Confidence 7999999 33457999999999999 78899999999999999999999999999999999999999984
No 4
>KOG4568|consensus
Probab=99.86 E-value=1.4e-22 Score=214.43 Aligned_cols=167 Identities=37% Similarity=0.506 Sum_probs=110.3
Q ss_pred CcccCCCCCCCceeCcEEeeecCCCceeeeeCCceeeccCCCCCCCCC--CCCCCCCCCCcCCCcccccCcccccccCCC
Q psy4533 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSPLLHLSDRPT--SRNSSVDEGRYSPFKKSSFDGLYSRKSSDG 78 (365)
Q Consensus 1 v~ld~p~GkndGsv~g~~yF~c~~~~g~fvr~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 78 (365)
|+||+|.|||||+|.|+|||+|++.+|||+|..+.+..+.+..+..|+ ...+...+ +..+ ++...+.+
T Consensus 50 veL~~p~GKNdGsv~G~rYF~ce~~kgif~~~~~~t~~~~~~~q~~~~~~~~~~~~~~-~~~~---~~sp~~~~------ 119 (664)
T KOG4568|consen 50 VELLEPKGKNDGSVHGKRYFQCEPKKGIFFRQGRGTASKNEKGQSSPPPSVPNSRLSS-AAAA---STSPNLQS------ 119 (664)
T ss_pred eeeccccCCCCcccchhhhhccccccceeecccccccccccccccCCCCCCCchhhcc-cccc---ccCccccc------
Confidence 799999999999999999999999999999999998875554432221 11100000 0000 00000000
Q ss_pred CcccccCCCCcCCCCCCccCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCceeCcEEEECCcccEEEEEeeeCCCCCCce
Q psy4533 79 GLFSRTSPEDISTASPVSECSPLSAKYPSPPCKPQATHSSPLYSMDSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDW 158 (365)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~vG~rV~v~g~~~G~vryiG~~~~~~G~W 158 (365)
.-|.. ++ -.+....+..++. .+.++....+.+...+.+||||.++|++.|++||+|.+.|++|.|
T Consensus 120 -----~ip~~---~s--~~~~~~kss~~s~-----s~~~~~~~s~~~~~~l~v~dr~l~~gq~~~~~r~~~~t~fa~g~w 184 (664)
T KOG4568|consen 120 -----SIPLL---AS--LSNTIVKSSLESY-----STLSSTGKSPTSMLGLRVGDRVLVGGQKSGTLRYSGHTKFASGSW 184 (664)
T ss_pred -----ccccc---cc--ccccccccccCCC-----CCcccccccccCccccccccceeecCcccchhhhhccccccCCcc
Confidence 00000 00 0000011111110 111112233556688999999999999999999999999999999
Q ss_pred EEEeeccCCCC--------eeEEecCCCCcccccccceeEEEeCCceeecCC
Q psy4533 159 AGKNRLDEPDR--------ARIRHCPRASAISNAIRSTAIFSRLNALTRSPS 202 (365)
Q Consensus 159 ~GVeelDep~G--------~rYF~C~~~~~~~~~~p~~G~Fvr~skV~k~~~ 202 (365)
+|| |||+|.| ++||+|++ +||.|.++.+|.+...
T Consensus 185 ~~~-elde~~~~~d~sv~k~~~~~~k~---------ky~~f~~v~kv~~~~~ 226 (664)
T KOG4568|consen 185 LGV-ELDEPVGKNDGSVGKVRYFQCKP---------KYGKFAPVQKVFKIEV 226 (664)
T ss_pred cch-hcccccccccccccccccccCcc---------hhcchhHHHHHhhccc
Confidence 999 8999986 99999999 9999999999887744
No 5
>COG5244 NIP100 Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]
Probab=99.76 E-value=6.2e-19 Score=178.58 Aligned_cols=67 Identities=49% Similarity=0.959 Sum_probs=62.8
Q ss_pred CCccCCEEEEEcCCCCceEEEEEeccccCCCCceEEEEecCCCCCCCceECCEEeeecCCCCeeeEecCCc
Q psy4533 265 EIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKV 335 (365)
Q Consensus 265 ~l~VGdRV~V~~~~g~~~GtVRyiG~~~~~~G~wvGVELDep~GknDGsv~G~rYF~C~p~~GiFV~~~kV 335 (365)
-|.|||||.|. ...|+|||+|.++|+.|+|+|||||+|.|||||+++|+|||+|+.+||+|+++..=
T Consensus 3 ~lSv~D~Vll~----~~~g~VrfiG~t~f~~GiW~GlELd~p~GkNDGSvnGvRYF~Ckk~~giFir~~~~ 69 (669)
T COG5244 3 LLSVNDRVLLG----DKFGTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRPDDD 69 (669)
T ss_pred eeecCCEEEec----cccceEEEeeecccccceEEEEEecCCCCCCCCccCceEEEEecCCcceEEecCch
Confidence 47899999995 67999999999999999999999999999999999999999999999999996653
No 6
>PF01302 CAP_GLY: CAP-Gly domain; InterPro: IPR000938 Cytoskeleton-associated proteins (CAP) are made of three distinct parts, an N-terminal section that is most probably globular and contains the CAP-Gly domain, a large central region predicted to be in an alpha-helical coiled-coil conformation and, finally, a short C-terminal globular domain. The CAP-Gly domain is a conserved, glycine-rich domain of about 42 residues found in some CAPs []. Proteins known to contain this domain include restin (also known as cytoplasmic linker protein-170 or CLIP-170), a 160 kDa protein associated with intermediate filaments and that links endocytic vesicles to microtubules; vertebrate dynactin (150 kDa dynein-associated polypeptide; DAP) and Drosophila glued, a major component of activator I; yeast protein BIK1, which seems to be required for the formation or stabilisation of microtubules during mitosis and for spindle pole body fusion during conjugation; yeast protein NIP100 (NIP80); human protein CKAP1/TFCB; Schizosaccharomyces pombe protein alp11 and Caenorhabditis elegans hypothetical protein F53F4.3. The latter proteins contain a N-terminal ubiquitin domain and a C-terminal CAP-Gly domain. The crystal structure of the CAP-Gly domain of C. elegans F53F4.3 protein, solved by single wavelength sulphur-anomalous phasing, revealed a novel protein fold containing three beta-sheets. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove. Residues in the groove are highly conserved as measured from the information content of the aligned sequences. The C-terminal tail of another molecule in the crystal is bound in this groove []. ; PDB: 2CP6_A 2E4H_A 2E3H_A 3E2U_B 2HL3_B 3TQ7_Q 2HKQ_B 2HQH_A 2HKN_B 2HL5_C ....
Probab=99.71 E-value=1.3e-17 Score=130.58 Aligned_cols=58 Identities=41% Similarity=0.765 Sum_probs=50.5
Q ss_pred eCcEEEE--CCcccEEEEEeeeCC-CCCCceEEEeeccCCCC--------eeEEecCCCCcccccccceeEEEeCCcee
Q psy4533 131 IGDRVYV--GGTIPGKIAYIGETK-FGPGDWAGKNRLDEPDR--------ARIRHCPRASAISNAIRSTAIFSRLNALT 198 (365)
Q Consensus 131 vG~rV~v--~g~~~G~vryiG~~~-~~~G~W~GVeelDep~G--------~rYF~C~~~~~~~~~~p~~G~Fvr~skV~ 198 (365)
|||||.| .....|+|||||+++ ++.|+|+|| |||+|.| +|||+|++ ++|+|+++++|+
T Consensus 1 VG~rV~v~~~~~~~G~vryiG~~~~~~~g~~vGV-Eld~~~G~~dGt~~G~rYF~c~~---------~~G~Fv~~~~v~ 69 (69)
T PF01302_consen 1 VGDRVRVDDPGGRRGTVRYIGPVPGFKSGIWVGV-ELDEPRGKNDGTVKGKRYFECPP---------NHGIFVRPSKVE 69 (69)
T ss_dssp TTSEEEESSTTTEEEEEEEEEE-SSSSSSEEEEE-EESSSTSSBSSEETTEESS-SST---------TTEEEEEGGGE-
T ss_pred CCCEEEEeeCCCCEEEEEEEeeCCCCCCCEEEEE-EEcCCCCCCCcEECCEEEeeeCC---------CCEEEecHHHCC
Confidence 6999999 445799999999999 888999999 8999975 99999999 999999999985
No 7
>KOG0971|consensus
Probab=99.68 E-value=3e-17 Score=175.27 Aligned_cols=77 Identities=42% Similarity=0.800 Sum_probs=70.6
Q ss_pred cCCCccCCEEEEEcCCCCceEEEEEeccccCCCCceEEEEecCCCCCCCceECCEEeeecCCCCeeeEecCCcccCCCc
Q psy4533 263 RNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSPVQ 341 (365)
Q Consensus 263 ~~~l~VGdRV~V~~~~g~~~GtVRyiG~~~~~~G~wvGVELDep~GknDGsv~G~rYF~C~p~~GiFV~~~kV~~~~~~ 341 (365)
...|+||.||.|.. +...|+|.|||.+.|+.|.||||-||+|.|||||+|+|++||+|.+|||+||+.+.|..+.+.
T Consensus 3 ~r~lkvG~RVevtg--knl~G~VayvG~T~FA~G~WvGVvLDep~GKNnGsVqg~qYF~Cd~ncG~FVr~sq~r~lEda 79 (1243)
T KOG0971|consen 3 PRSLKVGTRVEVTG--KNLQGTVAYVGQTQFAEGKWVGVVLDEPKGKNNGSVQGVQYFECDENCGVFVRSSQVRELEDA 79 (1243)
T ss_pred CccccccceEEecc--CCccceEEEecccccccCceEEEEeccccCCCCCcccceeeEecCCCcceEeehhhhHHhhcc
Confidence 45799999999984 467899999999999999999999999999999999999999999999999999997665544
No 8
>KOG3207|consensus
Probab=99.61 E-value=4.8e-16 Score=157.58 Aligned_cols=90 Identities=32% Similarity=0.509 Sum_probs=82.7
Q ss_pred CCccCCEEEEEcCCCCceEEEEEeccccCCCCceEEEEecCCC-CCCCceECCEEeeecC-CCCeeeEecCCcccCCCcc
Q psy4533 265 EIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPL-GKNDGSVDGVRYFYCE-PRFGVFAPVSKVSKSPVQA 342 (365)
Q Consensus 265 ~l~VGdRV~V~~~~g~~~GtVRyiG~~~~~~G~wvGVELDep~-GknDGsv~G~rYF~C~-p~~GiFV~~~kV~~~~~~~ 342 (365)
..+||+||.|. ..++||||+|.+++.++.|+|||||+|. |||||+++|+|||.|. |+-|.|+++.||..--+..
T Consensus 2 ~~~IG~RvkI~----~~~~Tvr~iG~V~g~~~~w~GvEWDd~~RGKH~G~vdgk~YF~~q~P~GGSFik~~kV~~p~d~~ 77 (505)
T KOG3207|consen 2 TMEIGTRVKIG----GEIATVRYIGEVEGNNSKWYGVEWDDPVRGKHDGIVDGKRYFQTQHPNGGSFIKPGKVKFPTDLL 77 (505)
T ss_pred ceeccceEEEc----CEEEEEEEEEEEcCCCCcceeeEecCCCccccCceecceeeeeeecCCCccccCCccCCCCccHH
Confidence 46899999995 6899999999999999999999999997 9999999999999996 9999999999999888877
Q ss_pred CCccccceeecCCCCCCC
Q psy4533 343 SGHASKNCVVHPSKDIPT 360 (365)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~ 360 (365)
+.|+++.+.+||-+.+
T Consensus 78 --~t~~ery~e~~s~~sd 93 (505)
T KOG3207|consen 78 --RTFKERYYEKYSYSSD 93 (505)
T ss_pred --HHHHHHHHHhhcCCcc
Confidence 7899999999996544
No 9
>KOG3206|consensus
Probab=99.59 E-value=1.4e-15 Score=141.00 Aligned_cols=69 Identities=32% Similarity=0.558 Sum_probs=63.7
Q ss_pred CCceeCcEEEEC--Cc--ccEEEEEeeeCCCCCCceEEEeeccCCCC--------eeEEecCCCCcccccccceeEEEeC
Q psy4533 127 DSFIIGDRVYVG--GT--IPGKIAYIGETKFGPGDWAGKNRLDEPDR--------ARIRHCPRASAISNAIRSTAIFSRL 194 (365)
Q Consensus 127 ~~~~vG~rV~v~--g~--~~G~vryiG~~~~~~G~W~GVeelDep~G--------~rYF~C~~~~~~~~~~p~~G~Fvr~ 194 (365)
..+.||+||.|. |+ ++|+|||+|+++|.+|.|||| +.|||.| +|||.|++ +||.||||
T Consensus 147 ~~i~vG~rCeVtv~G~~~Rrg~vrYvG~~~~k~G~wiGV-eydEplGKnDGsv~G~ryF~c~p---------~yGgfVrP 216 (234)
T KOG3206|consen 147 ATIAVGRRCEVTVPGQAPRRGTVRYVGPLEFKPGYWIGV-EYDEPLGKNDGSVNGKRYFECAP---------KYGGFVRP 216 (234)
T ss_pred hccccCCeeEEecCCCCCcceEEEEecccCCCCceEEEE-ecCCccccCCCcccceEeeecCC---------ccCCcccc
Confidence 348999999885 66 899999999999999999999 8999986 99999999 99999999
Q ss_pred CceeecCCCCC
Q psy4533 195 NALTRSPSPTS 205 (365)
Q Consensus 195 skV~k~~~~~~ 205 (365)
..|+.+.+|+.
T Consensus 217 ~~V~Vgdfpee 227 (234)
T KOG3206|consen 217 RAVTVGDFPEE 227 (234)
T ss_pred ceeeecCCChh
Confidence 99999998864
No 10
>COG5244 NIP100 Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]
Probab=99.39 E-value=3e-13 Score=137.70 Aligned_cols=57 Identities=39% Similarity=0.751 Sum_probs=53.1
Q ss_pred ceeCcEEEECCcccEEEEEeeeCCCCCCceEEEeeccCCCC--------eeEEecCCCCcccccccceeEEEeCCc
Q psy4533 129 FIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPDR--------ARIRHCPRASAISNAIRSTAIFSRLNA 196 (365)
Q Consensus 129 ~~vG~rV~v~g~~~G~vryiG~~~~~~G~W~GVeelDep~G--------~rYF~C~~~~~~~~~~p~~G~Fvr~sk 196 (365)
+.|||||.|++. .|+|||||+++|++|+|+|| |||+|.| +|||+|.. .+|+|+|+..
T Consensus 4 lSv~D~Vll~~~-~g~VrfiG~t~f~~GiW~Gl-ELd~p~GkNDGSvnGvRYF~Ckk---------~~giFir~~~ 68 (669)
T COG5244 4 LSVNDRVLLGDK-FGTVRFIGKTKFKDGIWIGL-ELDDPVGKNDGSVNGVRYFHCKK---------RHGIFIRPDD 68 (669)
T ss_pred eecCCEEEeccc-cceEEEeeecccccceEEEE-EecCCCCCCCCccCceEEEEecC---------CcceEEecCc
Confidence 569999999997 79999999999999999999 8999986 99999999 9999999654
No 11
>KOG0971|consensus
Probab=99.37 E-value=6.6e-13 Score=142.57 Aligned_cols=68 Identities=32% Similarity=0.674 Sum_probs=62.2
Q ss_pred CCCceeCcEEEECCc-ccEEEEEeeeCCCCCCceEEEeeccCCCC--------eeEEecCCCCcccccccceeEEEeCCc
Q psy4533 126 TDSFIIGDRVYVGGT-IPGKIAYIGETKFGPGDWAGKNRLDEPDR--------ARIRHCPRASAISNAIRSTAIFSRLNA 196 (365)
Q Consensus 126 ~~~~~vG~rV~v~g~-~~G~vryiG~~~~~~G~W~GVeelDep~G--------~rYF~C~~~~~~~~~~p~~G~Fvr~sk 196 (365)
...|+||.||.|.|. ..|+|.|||-|.|+.|.|+|| .||+|.| ++||+|++ ++|+|||.+.
T Consensus 3 ~r~lkvG~RVevtgknl~G~VayvG~T~FA~G~WvGV-vLDep~GKNnGsVqg~qYF~Cd~---------ncG~FVr~sq 72 (1243)
T KOG0971|consen 3 PRSLKVGTRVEVTGKNLQGTVAYVGQTQFAEGKWVGV-VLDEPKGKNNGSVQGVQYFECDE---------NCGVFVRSSQ 72 (1243)
T ss_pred CccccccceEEeccCCccceEEEecccccccCceEEE-EeccccCCCCCcccceeeEecCC---------CcceEeehhh
Confidence 467999999999876 679999999999999999999 9999986 99999999 9999999999
Q ss_pred eeecCCC
Q psy4533 197 LTRSPSP 203 (365)
Q Consensus 197 V~k~~~~ 203 (365)
|...+++
T Consensus 73 ~r~lEda 79 (1243)
T KOG0971|consen 73 VRELEDA 79 (1243)
T ss_pred hHHhhcc
Confidence 7766665
No 12
>KOG3556|consensus
Probab=99.09 E-value=1.5e-10 Score=119.43 Aligned_cols=80 Identities=28% Similarity=0.417 Sum_probs=72.0
Q ss_pred CCCccCCEEEEEcCC--CCceEEEEEeccccCCCCceEEEEecCC-----CCCCCceECCEEeeecCCCCeeeEecCCcc
Q psy4533 264 NEIRLGDRVIIRSSQ--GSKSGVLKYKGDTYFADGEWCGVELDDP-----LGKNDGSVDGVRYFYCEPRFGVFAPVSKVS 336 (365)
Q Consensus 264 ~~l~VGdRV~V~~~~--g~~~GtVRyiG~~~~~~G~wvGVELDep-----~GknDGsv~G~rYF~C~p~~GiFV~~~kV~ 336 (365)
..|+||+.|+|.+.+ ...+|+|||||.-|...|+|+|||+|+. .+..||+..|.|||+|-.+..+||+...|+
T Consensus 234 ~~L~IGslveV~np~~~~~~ygvVrWIG~pP~~~~Vl~gve~edet~~~~~~~~dgs~~g~Rlftc~d~~a~Fv~~~scs 313 (724)
T KOG3556|consen 234 LNLKIGSLVEVENPETMRRVYGVVRWIGEPPEASGVLYGVEFEDETSQWPSSNQDGSSSGDRLFTCFDTNANFVMSGSCS 313 (724)
T ss_pred ccceecceEEecCCccccccceeeEecccCCcccCceEeeeecCccccCccccccCcccCceeeeeccccceeeEcCCCC
Confidence 459999999998532 2679999999999999999999999985 488999999999999999999999999999
Q ss_pred cCCCccC
Q psy4533 337 KSPVQAS 343 (365)
Q Consensus 337 ~~~~~~~ 343 (365)
..+..+.
T Consensus 314 ~d~rfa~ 320 (724)
T KOG3556|consen 314 VDPRFAR 320 (724)
T ss_pred cCcccch
Confidence 9888773
No 13
>KOG3207|consensus
Probab=99.03 E-value=2.5e-10 Score=116.52 Aligned_cols=64 Identities=25% Similarity=0.437 Sum_probs=57.7
Q ss_pred CceeCcEEEECCcccEEEEEeeeCCCCCCceEEEeeccCCC---------CeeEEecCCCCcccccccceeEEEeCCcee
Q psy4533 128 SFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPD---------RARIRHCPRASAISNAIRSTAIFSRLNALT 198 (365)
Q Consensus 128 ~~~vG~rV~v~g~~~G~vryiG~~~~~~G~W~GVeelDep~---------G~rYF~C~~~~~~~~~~p~~G~Fvr~skV~ 198 (365)
.+.||+||.|+|. .+||||+|++++-.|-|+|| |||+|. |+|||+|.. |..|+|+++.||.
T Consensus 2 ~~~IG~RvkI~~~-~~Tvr~iG~V~g~~~~w~Gv-EWDd~~RGKH~G~vdgk~YF~~q~--------P~GGSFik~~kV~ 71 (505)
T KOG3207|consen 2 TMEIGTRVKIGGE-IATVRYIGEVEGNNSKWYGV-EWDDPVRGKHDGIVDGKRYFQTQH--------PNGGSFIKPGKVK 71 (505)
T ss_pred ceeccceEEEcCE-EEEEEEEEEEcCCCCcceee-EecCCCccccCceecceeeeeeec--------CCCccccCCccCC
Confidence 3679999999998 79999999999999999999 899995 499999988 5999999999986
Q ss_pred ecC
Q psy4533 199 RSP 201 (365)
Q Consensus 199 k~~ 201 (365)
...
T Consensus 72 ~p~ 74 (505)
T KOG3207|consen 72 FPT 74 (505)
T ss_pred CCc
Confidence 543
No 14
>KOG0241|consensus
Probab=98.97 E-value=6.3e-10 Score=120.63 Aligned_cols=75 Identities=43% Similarity=0.582 Sum_probs=67.4
Q ss_pred ccccCCCccCCEEEEEcCCCCceEEEEEeccccCCCCceEEEEecCCCCCCCceECCEEeeecCCCCeeeEecCCcccCC
Q psy4533 260 VIIRNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSP 339 (365)
Q Consensus 260 ~~~~~~l~VGdRV~V~~~~g~~~GtVRyiG~~~~~~G~wvGVELDep~GknDGsv~G~rYF~C~p~~GiFV~~~kV~~~~ 339 (365)
.+....+.+|.+|.+.. ...++|||+|.++|.+ |||||.|.|||||++.|++||.|.|+||+||+++++...+
T Consensus 1625 ~~~pew~~~ge~v~~~~---h~t~v~r~vg~tefq~----gveld~p~gkndgs~gg~qyfrc~p~~g~~vr~s~~~~~~ 1697 (1714)
T KOG0241|consen 1625 KISPEWRGFGERVVTVE---HTTNVLRDVGFTEFQG----GVELDDPDGKNDGSAGGLQYFRCLPNKGGGVRVSDGLHHP 1697 (1714)
T ss_pred hcCchhhhcCceeEEee---cccceeeecchhhccC----cccccCCCCCcCccccceeEEeecCCCCCcccchhhccCc
Confidence 45677899999998864 4678999999999988 9999999999999999999999999999999999998766
Q ss_pred Cc
Q psy4533 340 VQ 341 (365)
Q Consensus 340 ~~ 341 (365)
..
T Consensus 1698 ~~ 1699 (1714)
T KOG0241|consen 1698 SQ 1699 (1714)
T ss_pred Hh
Confidence 53
No 15
>KOG3556|consensus
Probab=98.07 E-value=5.1e-06 Score=86.58 Aligned_cols=65 Identities=22% Similarity=0.297 Sum_probs=55.6
Q ss_pred CCCceeCcEEEECC-----cccEEEEEeeeCCCCCCceEEEeeccCCC-------------CeeEEecCCCCcccccccc
Q psy4533 126 TDSFIIGDRVYVGG-----TIPGKIAYIGETKFGPGDWAGKNRLDEPD-------------RARIRHCPRASAISNAIRS 187 (365)
Q Consensus 126 ~~~~~vG~rV~v~g-----~~~G~vryiG~~~~~~G~W~GVeelDep~-------------G~rYF~C~~~~~~~~~~p~ 187 (365)
...|+||+.|.|.. ..+|+|||||+-+.++|+|+|| |+|+.. |.|||+|-. +
T Consensus 233 ~~~L~IGslveV~np~~~~~~ygvVrWIG~pP~~~~Vl~gv-e~edet~~~~~~~~dgs~~g~Rlftc~d---------~ 302 (724)
T KOG3556|consen 233 ILNLKIGSLVEVENPETMRRVYGVVRWIGEPPEASGVLYGV-EFEDETSQWPSSNQDGSSSGDRLFTCFD---------T 302 (724)
T ss_pred cccceecceEEecCCccccccceeeEecccCCcccCceEee-eecCccccCccccccCcccCceeeeecc---------c
Confidence 45699999999973 2789999999999999999999 788763 499999999 8
Q ss_pred eeEEEeCCceeec
Q psy4533 188 TAIFSRLNALTRS 200 (365)
Q Consensus 188 ~G~Fvr~skV~k~ 200 (365)
...|+....+...
T Consensus 303 ~a~Fv~~~scs~d 315 (724)
T KOG3556|consen 303 NANFVMSGSCSVD 315 (724)
T ss_pred cceeeEcCCCCcC
Confidence 9999987776543
No 16
>KOG0241|consensus
Probab=97.77 E-value=3.2e-05 Score=85.17 Aligned_cols=60 Identities=22% Similarity=0.237 Sum_probs=53.7
Q ss_pred CCCceeCcEEEECCcccEEEEEeeeCCCCCCceEEEeeccCCCC--------eeEEecCCCCcccccccceeEEEeCCce
Q psy4533 126 TDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPDR--------ARIRHCPRASAISNAIRSTAIFSRLNAL 197 (365)
Q Consensus 126 ~~~~~vG~rV~v~g~~~G~vryiG~~~~~~G~W~GVeelDep~G--------~rYF~C~~~~~~~~~~p~~G~Fvr~skV 197 (365)
...+..|.+|.+.....++|||+|.++|-. || |||.|.| ++||+|.| ++|.|++++++
T Consensus 1628 pew~~~ge~v~~~~h~t~v~r~vg~tefq~----gv-eld~p~gkndgs~gg~qyfrc~p---------~~g~~vr~s~~ 1693 (1714)
T KOG0241|consen 1628 PEWRGFGERVVTVEHTTNVLRDVGFTEFQG----GV-ELDDPDGKNDGSAGGLQYFRCLP---------NKGGGVRVSDG 1693 (1714)
T ss_pred chhhhcCceeEEeecccceeeecchhhccC----cc-cccCCCCCcCccccceeEEeecC---------CCCCcccchhh
Confidence 355788999999877789999999999987 99 8999986 99999999 99999999987
Q ss_pred ee
Q psy4533 198 TR 199 (365)
Q Consensus 198 ~k 199 (365)
-.
T Consensus 1694 ~~ 1695 (1714)
T KOG0241|consen 1694 LH 1695 (1714)
T ss_pred cc
Confidence 64
No 17
>PRK10708 hypothetical protein; Provisional
Probab=94.41 E-value=0.15 Score=39.25 Aligned_cols=55 Identities=24% Similarity=0.321 Sum_probs=43.5
Q ss_pred ceeCcEEEEC--Cc--ccEEEEEeeeCCCCCCceEEEeeccC-CCCeeEEecCCCCcccccccceeEEEeC
Q psy4533 129 FIIGDRVYVG--GT--IPGKIAYIGETKFGPGDWAGKNRLDE-PDRARIRHCPRASAISNAIRSTAIFSRL 194 (365)
Q Consensus 129 ~~vG~rV~v~--g~--~~G~vryiG~~~~~~G~W~GVeelDe-p~G~rYF~C~~~~~~~~~~p~~G~Fvr~ 194 (365)
++|.|||.|. |. +.|+|.-+ -+|..|+.+=| .|++ |.|+-||.=... .-|+|+.+
T Consensus 1 MkvnD~VtVKTDG~~rR~G~iLav--E~F~EG~MyLv-aL~dYP~GiWFFNE~~~--------~~G~FVep 60 (62)
T PRK10708 1 MKVNDRVTVKTDGGPRRPGVVLAV--EEFSEGTMYLV-SLEDYPLGIWFFNEAGH--------QDGIFVEK 60 (62)
T ss_pred CccccEEEEecCCCccccceEEEE--eeccCcEEEEE-EcCcCCCceEEEeccCC--------CCceEecc
Confidence 4689999995 32 78999988 46899999999 6765 899999975442 77999876
No 18
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=94.29 E-value=0.17 Score=38.95 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=43.8
Q ss_pred ceeCcEEEEC--Cc--ccEEEEEeeeCCCCCCceEEEeeccC-CCCeeEEecCCCCcccccccceeEEEeCC
Q psy4533 129 FIIGDRVYVG--GT--IPGKIAYIGETKFGPGDWAGKNRLDE-PDRARIRHCPRASAISNAIRSTAIFSRLN 195 (365)
Q Consensus 129 ~~vG~rV~v~--g~--~~G~vryiG~~~~~~G~W~GVeelDe-p~G~rYF~C~~~~~~~~~~p~~G~Fvr~s 195 (365)
++|.|||.|. |. +.|+|.-+ -+|..|+.+=| .|++ |.|+-||.=... .-|+|+.+.
T Consensus 1 MkvnD~VtVKTDG~~rR~G~ilav--E~F~EG~MYLv-aL~dYP~GiWFFNE~~~--------~dG~FVep~ 61 (62)
T PF10781_consen 1 MKVNDRVTVKTDGGPRREGVILAV--EPFNEGTMYLV-ALEDYPAGIWFFNEKDS--------PDGTFVEPR 61 (62)
T ss_pred CccccEEEEecCCcccccceEEEE--eeccCcEEEEE-EcCcCCcceEEEecCCC--------CCcEEeeec
Confidence 4789999995 33 78999888 46899999999 6765 899999974442 779998653
No 19
>PTZ00243 ABC transporter; Provisional
Probab=93.29 E-value=0.085 Score=62.48 Aligned_cols=59 Identities=24% Similarity=0.238 Sum_probs=48.8
Q ss_pred cCCCccCCEEEEEcCCCCceEEEEEecccc--CCCCceEEEEecCC--------------CCCCCceECCEEeeec
Q psy4533 263 RNEIRLGDRVIIRSSQGSKSGVLKYKGDTY--FADGEWCGVELDDP--------------LGKNDGSVDGVRYFYC 322 (365)
Q Consensus 263 ~~~l~VGdRV~V~~~~g~~~GtVRyiG~~~--~~~G~wvGVELDep--------------~GknDGsv~G~rYF~C 322 (365)
+=+-.||.||-+..+ ..-.|++||+|.++ +.++.++||||+-| .+-|||.++|.+.|.-
T Consensus 122 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (1560)
T PTZ00243 122 AWNCMVGAEVVSTLD-ASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTP 196 (1560)
T ss_pred ccccccccEEEeecc-ccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCc
Confidence 446789999988864 46799999999997 55889999999976 1358999999999975
No 20
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=87.96 E-value=3.1 Score=32.19 Aligned_cols=58 Identities=28% Similarity=0.544 Sum_probs=44.2
Q ss_pred CccCCEEEEEcCCC-CceEEEEEeccccCCCCceEEEEecC-CCCCCCceECCEEeeec-CCCCeeeEecC
Q psy4533 266 IRLGDRVIIRSSQG-SKSGVLKYKGDTYFADGEWCGVELDD-PLGKNDGSVDGVRYFYC-EPRFGVFAPVS 333 (365)
Q Consensus 266 l~VGdRV~V~~~~g-~~~GtVRyiG~~~~~~G~wvGVELDe-p~GknDGsv~G~rYF~C-~p~~GiFV~~~ 333 (365)
++|.|||.|+.+++ .+.|+|.-+- +|..|+++=|.|++ |. |+-||.= ...-|+||.+.
T Consensus 1 MkvnD~VtVKTDG~~rR~G~ilavE--~F~EG~MYLvaL~dYP~--------GiWFFNE~~~~dG~FVep~ 61 (62)
T PF10781_consen 1 MKVNDRVTVKTDGGPRREGVILAVE--PFNEGTMYLVALEDYPA--------GIWFFNEKDSPDGTFVEPR 61 (62)
T ss_pred CccccEEEEecCCcccccceEEEEe--eccCcEEEEEEcCcCCc--------ceEEEecCCCCCcEEeeec
Confidence 47899999998654 5688888765 46889999999987 54 4557764 57889999764
No 21
>PRK10708 hypothetical protein; Provisional
Probab=87.43 E-value=3.6 Score=31.85 Aligned_cols=58 Identities=29% Similarity=0.591 Sum_probs=44.3
Q ss_pred CccCCEEEEEcCCC-CceEEEEEeccccCCCCceEEEEecC-CCCCCCceECCEEeeec-CCCCeeeEecC
Q psy4533 266 IRLGDRVIIRSSQG-SKSGVLKYKGDTYFADGEWCGVELDD-PLGKNDGSVDGVRYFYC-EPRFGVFAPVS 333 (365)
Q Consensus 266 l~VGdRV~V~~~~g-~~~GtVRyiG~~~~~~G~wvGVELDe-p~GknDGsv~G~rYF~C-~p~~GiFV~~~ 333 (365)
++|.|||.|+.+++ .+.|+|.-+- +|..|+++=|.|++ |. |+-||.= ...-|+||.+.
T Consensus 1 MkvnD~VtVKTDG~~rR~G~iLavE--~F~EG~MyLvaL~dYP~--------GiWFFNE~~~~~G~FVep~ 61 (62)
T PRK10708 1 MKVNDRVTVKTDGGPRRPGVVLAVE--EFSEGTMYLVSLEDYPL--------GIWFFNEAGHQDGIFVEKA 61 (62)
T ss_pred CccccEEEEecCCCccccceEEEEe--eccCcEEEEEEcCcCCC--------ceEEEeccCCCCceEeccc
Confidence 47899999998654 5688888765 46889999999987 54 4557764 57889999763
No 22
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=65.23 E-value=22 Score=26.84 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=36.8
Q ss_pred CccCCEEEEEcCCCCceEEEEEeccccCCCCceEEEEecCCCCCCCceE
Q psy4533 266 IRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSV 314 (365)
Q Consensus 266 l~VGdRV~V~~~~g~~~GtVRyiG~~~~~~G~wvGVELDep~GknDGsv 314 (365)
|++||.|++++. .-.=||.++|...+..+.|+=-.|-+..|.+.+.|
T Consensus 1 f~~GDvV~LKSG--Gp~MTV~~v~~~~~~~~~~v~C~WFd~~~~~~~~F 47 (53)
T PF09926_consen 1 FKIGDVVQLKSG--GPRMTVTEVGPNAGASGGWVECQWFDGHGEQRETF 47 (53)
T ss_pred CCCCCEEEEccC--CCCeEEEEccccccCCCCeEEEEeCCCCCcccccc
Confidence 579999999874 44559999999988888888888877666655444
No 23
>PTZ00243 ABC transporter; Provisional
Probab=63.05 E-value=7.4 Score=46.69 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=35.0
Q ss_pred CCCCceeCcEEEECCc--ccEEEEEeeeCC--CCCCceEEEeeccCC
Q psy4533 125 STDSFIIGDRVYVGGT--IPGKIAYIGETK--FGPGDWAGKNRLDEP 167 (365)
Q Consensus 125 ~~~~~~vG~rV~v~g~--~~G~vryiG~~~--~~~G~W~GVeelDep 167 (365)
...+-.||.||-+..+ -.|++||+|.++ +.++.++|| ||+-|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 166 (1560)
T PTZ00243 121 NAWNCMVGAEVVSTLDASSRGVLRWVGVPQQGGYTRMMAGV-EWSVP 166 (1560)
T ss_pred cccccccccEEEeeccccccceEEeecccccCCCcceeeee-eeccC
Confidence 3466789999988643 589999999996 578899999 89987
No 24
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=36.89 E-value=25 Score=31.60 Aligned_cols=25 Identities=36% Similarity=0.767 Sum_probs=18.0
Q ss_pred CCCceeCcEEEECCcccEEEEEeeeC
Q psy4533 126 TDSFIIGDRVYVGGTIPGKIAYIGET 151 (365)
Q Consensus 126 ~~~~~vG~rV~v~g~~~G~vryiG~~ 151 (365)
...|++||+|.++|. .|+|..+|-.
T Consensus 58 ~~pf~vGD~I~i~~~-~G~V~~I~l~ 82 (206)
T PF00924_consen 58 ERPFKVGDRIEIGGV-EGRVEEIGLR 82 (206)
T ss_dssp C-SS-TT-EEESSS--EEEEEEE-SS
T ss_pred cCCccCCCEEEEEEe-ehHHHhcCcc
Confidence 468999999999987 7999999876
No 25
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=36.43 E-value=21 Score=27.35 Aligned_cols=49 Identities=31% Similarity=0.522 Sum_probs=21.5
Q ss_pred CCCccCCEEEEEcCCCCceEEEEEeccccCCCCceEEEEecCCCCCCCceE
Q psy4533 264 NEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSV 314 (365)
Q Consensus 264 ~~l~VGdRV~V~~~~g~~~GtVRyiG~~~~~~G~wvGVELDep~GknDGsv 314 (365)
..|+.||||++....+.++=++---|.. | .-.+=.|.-|+-+|+.+|+|
T Consensus 4 Gpf~~GdrVQlTD~Kgr~~Ti~L~~G~~-f-hThrG~i~HDdlIG~~eGsV 52 (54)
T PF14801_consen 4 GPFRAGDRVQLTDPKGRKHTITLEPGGE-F-HTHRGAIRHDDLIGRPEGSV 52 (54)
T ss_dssp -S--TT-EEEEEETT--EEEEE--TT-E-E-EETTEEEEHHHHTT--TTEE
T ss_pred CCCCCCCEEEEccCCCCeeeEEECCCCe-E-EcCccccchhheecCCCcEE
Confidence 4699999999986433322221111110 0 01233477777788888876
No 26
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=28.46 E-value=54 Score=26.73 Aligned_cols=33 Identities=30% Similarity=0.379 Sum_probs=25.8
Q ss_pred CCCceeCcEEEECCcccEEEEEeeeCCCCCCceEEEeecc
Q psy4533 126 TDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLD 165 (365)
Q Consensus 126 ~~~~~vG~rV~v~g~~~G~vryiG~~~~~~G~W~GVeelD 165 (365)
.+.|++||+|...|...|+|.-+++ .++-| |..
T Consensus 35 ~~~L~~Gd~VvT~gGi~G~V~~i~d------~~v~v-ei~ 67 (84)
T TIGR00739 35 IESLKKGDKVLTIGGIIGTVTKIAE------NTIVI-ELN 67 (84)
T ss_pred HHhCCCCCEEEECCCeEEEEEEEeC------CEEEE-EEC
Confidence 3678999999999888999998874 35666 443
No 27
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=27.09 E-value=1.6e+02 Score=22.18 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=31.7
Q ss_pred ceeCcEEEEC-CcccEEEEEeeeCCCCCCceEEEeeccCCCC
Q psy4533 129 FIIGDRVYVG-GTIPGKIAYIGETKFGPGDWAGKNRLDEPDR 169 (365)
Q Consensus 129 ~~vG~rV~v~-g~~~G~vryiG~~~~~~G~W~GVeelDep~G 169 (365)
|++||.|++. |.-.=||.++|+..+..+.|+=- .|=+..|
T Consensus 1 f~~GDvV~LKSGGp~MTV~~v~~~~~~~~~~v~C-~WFd~~~ 41 (53)
T PF09926_consen 1 FKIGDVVQLKSGGPRMTVTEVGPNAGASGGWVEC-QWFDGHG 41 (53)
T ss_pred CCCCCEEEEccCCCCeEEEEccccccCCCCeEEE-EeCCCCC
Confidence 5799999886 44568999999998888888877 6766554
No 28
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=26.62 E-value=98 Score=26.74 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=26.8
Q ss_pred CCceeCcEEEECCcccEEEEEeeeCCCCCCceEEEeecc
Q psy4533 127 DSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLD 165 (365)
Q Consensus 127 ~~~~vG~rV~v~g~~~G~vryiG~~~~~~G~W~GVeelD 165 (365)
.+|++||+|...|...|+|.-|.+ .++-| |+.
T Consensus 37 ~~Lk~GD~VvT~gGi~G~V~~I~d------~~v~l-eia 68 (109)
T PRK05886 37 ESLQPGDRVHTTSGLQATIVGITD------DTVDL-EIA 68 (109)
T ss_pred HhcCCCCEEEECCCeEEEEEEEeC------CEEEE-EEC
Confidence 578999999999888999999863 47888 665
No 29
>KOG3477|consensus
Probab=24.46 E-value=10 Score=31.80 Aligned_cols=18 Identities=28% Similarity=0.702 Sum_probs=14.8
Q ss_pred EEeeecCCCceeeeeCCc
Q psy4533 17 FRYFQCDPKHGIFSRLNR 34 (365)
Q Consensus 17 ~~yF~c~~~~g~fvr~~~ 34 (365)
+.||+|...||+|-..+-
T Consensus 56 K~YlqCRMdh~Lmdkdd~ 73 (97)
T KOG3477|consen 56 KKYLQCRMDHGLMDKDDM 73 (97)
T ss_pred HHHHHHhhhcccccHHHH
Confidence 469999999999976553
No 30
>PF13437 HlyD_3: HlyD family secretion protein
Probab=23.60 E-value=1.9e+02 Score=23.10 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=29.2
Q ss_pred ccCCCc-cCCEEEEEcCC---CCceEEEEEeccccCCCCceEEEE
Q psy4533 262 IRNEIR-LGDRVIIRSSQ---GSKSGVLKYKGDTYFADGEWCGVE 302 (365)
Q Consensus 262 ~~~~l~-VGdRV~V~~~~---g~~~GtVRyiG~~~~~~G~wvGVE 302 (365)
....|+ +|++|.+.... ....|+|.+|.......+-.+-|+
T Consensus 46 ~~~~i~~~g~~v~v~~~~~~~~~~~g~V~~I~~~~~~~~~~~~v~ 90 (105)
T PF13437_consen 46 DIARIKDPGQKVTVRLDPGPEKTIEGKVSSISPSPDPQGGTYRVE 90 (105)
T ss_pred hhcceEeCCCEEEEEECCCCCcEEEEEEEEEeCcccCCCcEEEEE
Confidence 456787 99999998642 267999999999765444444443
No 31
>PF13785 DUF4178: Domain of unknown function (DUF4178)
Probab=23.30 E-value=1.5e+02 Score=25.08 Aligned_cols=43 Identities=23% Similarity=0.421 Sum_probs=33.2
Q ss_pred ceeCcEEEECCc---ccEEEEEeeeCCCCCCceEEEeeccCCCC-eeEEecC
Q psy4533 129 FIIGDRVYVGGT---IPGKIAYIGETKFGPGDWAGKNRLDEPDR-ARIRHCP 176 (365)
Q Consensus 129 ~~vG~rV~v~g~---~~G~vryiG~~~~~~G~W~GVeelDep~G-~rYF~C~ 176 (365)
|++||.+.+.|. ..|.|+| +...+.|.=- .|..+.| .++....
T Consensus 1 L~~G~~~~~~g~~~~ViG~~~~----~~~~~~W~E~-~L~~~~~~~~WLsvE 47 (140)
T PF13785_consen 1 LQLGDIGRIDGKDYTVIGRIQY----DYEGGFWTEY-LLYNPGGGFAWLSVE 47 (140)
T ss_pred CCCCCEEEECCeEEEEEEEEEE----ECCCCeeEEE-EEEcCCCCEEEEEEE
Confidence 679999999986 6799998 3566888888 7776665 7777654
No 32
>TIGR02266 gmx_TIGR02266 Myxococcus xanthus paralogous domain TIGR02266. This domain is related to Type IV pilus assembly protein PilZ (Pfam model pfam07238). It is found in at least 12 copies in Myxococcus xanthus DK 1622.
Probab=22.66 E-value=2e+02 Score=22.57 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=29.4
Q ss_pred ccCCCccCCEEEEEc--CCC----CceEEEEEeccccCCCCceEEEEecCC
Q psy4533 262 IRNEIRLGDRVIIRS--SQG----SKSGVLKYKGDTYFADGEWCGVELDDP 306 (365)
Q Consensus 262 ~~~~l~VGdRV~V~~--~~g----~~~GtVRyiG~~~~~~G~wvGVELDep 306 (365)
....+.+|++|.|.- .+. ...|.|+|+-......-.++||++.+.
T Consensus 33 ~~~~~~~g~~v~l~l~l~~~~~~i~~~g~Vv~~~~~~~~~~~~~Gv~F~~~ 83 (96)
T TIGR02266 33 TRKPLAVGTRVELKLTLPGGERPVELKGVVAWVRPAADGGPPGMGVRFEDL 83 (96)
T ss_pred cCCCcCCCCEEEEEEEcCCCCeEEEEEEEEEEeCCCCCCCCCeeEEEeccC
Confidence 356788999887764 111 347888888754322236899998764
No 33
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=22.21 E-value=87 Score=26.51 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.2
Q ss_pred CCceeCcEEEECCcccEEEEEeeeC
Q psy4533 127 DSFIIGDRVYVGGTIPGKIAYIGET 151 (365)
Q Consensus 127 ~~~~vG~rV~v~g~~~G~vryiG~~ 151 (365)
.+++.||+|.-.|...|+|.-|++-
T Consensus 42 ~sL~kGD~VvT~gGi~G~V~~v~d~ 66 (97)
T COG1862 42 NSLKKGDEVVTIGGIVGTVTKVGDD 66 (97)
T ss_pred HhccCCCEEEEcCCeEEEEEEEecC
Confidence 5789999999998889999999884
No 34
>PF07238 PilZ: PilZ domain; InterPro: IPR009875 The ubiquitous bacterial second messenger cyclic-di-GMP (c-di-GMP) is associated with the regulation of biofilm formation, the control of exopolysaccharide synthesis, flagellar- and pili-based motility, gene expression, interactions of bacteria with eukaryotic hosts and multicellular behaviour in diverse bacteria. With the exception of bacterial cellulose synthases, the identities of c-di-GMP receptors and end targets of the proteins having one or more PilZ domains are mostly uncharacterised. However it was suggested that the PilZ domains present in the BcsA subunits of bacterial cellulose synthases function in c-di-GMP binding []. More recently YcgR (see IPR023787 from INTERPRO) was found to bind c-di-GMP tightly and specifically; also isolated PilZ domains from YcgR and BcsA bound c-di-GMP indicating that the PilZ domain was sufficient for binding of c-di-GMP and significantly that site-directed mutagenesis performed on YcgR implicated the most conserved residues in the PilZ domain directly in c-di-GMP binding []. It was suggested that c-di-GMP binding to PilZ brings about conformational changes in the protein that stabilise the bound ligand and probability initiates the downstream signal transduction cascade. In the case of YcgR, c-di-GMP binding regulates flagellum-based motility in a c-di-GMP-dependent manner (see IPR023787 from INTERPRO) []. The association of the PilZ domain with a variety of other domains, including likely components of bacterial multidrug secretion system, could provide clues to multiple functions of the c-di-GMP in bacterial pathogenesis and cell development. Binding and mutagenesis studies of several PilZ domain proteins have confirmed this observation and demonstrated that c-di-GMP binding depends on residues in RxxxR and D/NxSxxG sequence motifs. The crystal structure, at 1.7 A, of a PilZ domain::c-di-GMP complex from Vibrio cholerae shows c-di-GMP contacting seven of nine strongly conserved residues. Binding of c-di-GMP causes a conformational switch whereby the C- and N-terminal domains are brought into close opposition forming a new allosteric interaction surface that spans these domains and the c-di-GMP at their interface []. ; GO: 0035438 cyclic-di-GMP binding; PDB: 2RDE_B 1YLN_A 3KYG_A 3DSG_B 2GJG_A 3KYF_A 1YWU_A 2L74_A 2L1T_A 3CNR_A ....
Probab=21.95 E-value=1.3e+02 Score=22.86 Aligned_cols=41 Identities=29% Similarity=0.400 Sum_probs=28.6
Q ss_pred cCCCccCCEEEEEc--CCC--C-ceEEEEEeccccCCCCceEEEEecC
Q psy4533 263 RNEIRLGDRVIIRS--SQG--S-KSGVLKYKGDTYFADGEWCGVELDD 305 (365)
Q Consensus 263 ~~~l~VGdRV~V~~--~~g--~-~~GtVRyiG~~~~~~G~wvGVELDe 305 (365)
...+.+|+.|.|.. ... . ..|.|+|+-.. ..+.++|+++++
T Consensus 42 ~~~~~~~~~v~l~~~~~~~~~~~~~~~V~~~~~~--~~~~~~g~~f~~ 87 (102)
T PF07238_consen 42 PKPLEPGDRVRLSFSLPGGGFPIVTGRVVRIQKD--SDGYRVGVEFVD 87 (102)
T ss_dssp CTG--TTSEEEEEEECTTTSCEEEEEEEEEEEEE--SSEEEEEEEECH
T ss_pred CCCCCCCCEEEEEEEeCCCCeeEEEEEEEEEECC--CCceEEEEEEee
Confidence 34889999776654 222 2 78999999888 667899999854
No 35
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=21.89 E-value=81 Score=27.39 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=24.5
Q ss_pred CCceeCcEEEECCcccEEEEEeeeCCCCCCceEEE
Q psy4533 127 DSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGK 161 (365)
Q Consensus 127 ~~~~vG~rV~v~g~~~G~vryiG~~~~~~G~W~GV 161 (365)
..|+.||+|.-.|...|+|..|+. ...++-|
T Consensus 35 ~sLk~GD~VvT~GGi~G~V~~I~~----~~~~v~l 65 (113)
T PRK06531 35 NAIQKGDEVVTIGGLYGTVDEVDT----EAKTIVL 65 (113)
T ss_pred HhcCCCCEEEECCCcEEEEEEEec----CCCEEEE
Confidence 578999999998888999988864 2245666
No 36
>CHL00141 rpl24 ribosomal protein L24; Validated
Probab=21.88 E-value=1.2e+02 Score=24.74 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=20.4
Q ss_pred cCCCccCCEEEEEcC-CCCceEEEEEecc
Q psy4533 263 RNEIRLGDRVIIRSS-QGSKSGVLKYKGD 290 (365)
Q Consensus 263 ~~~l~VGdRV~V~~~-~g~~~GtVRyiG~ 290 (365)
...|..||+|.|..+ +..+.|+|..+-.
T Consensus 6 ~~~I~~GD~V~Vi~G~dKGK~G~V~~V~~ 34 (83)
T CHL00141 6 KMHVKIGDTVKIISGSDKGKIGEVLKIIK 34 (83)
T ss_pred eCcccCCCEEEEeEcCCCCcEEEEEEEEc
Confidence 347999999999874 2356777777643
No 37
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=21.76 E-value=1.7e+02 Score=23.79 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=24.8
Q ss_pred cCCCccCCEEEEEcCCCCceEEEEEeccccCCCCceEEEEec
Q psy4533 263 RNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELD 304 (365)
Q Consensus 263 ~~~l~VGdRV~V~~~~g~~~GtVRyiG~~~~~~G~wvGVELD 304 (365)
...|++||+|... ++.+|+|.-++. .++-||+.
T Consensus 35 ~~~L~~Gd~VvT~---gGi~G~V~~i~d------~~v~vei~ 67 (84)
T TIGR00739 35 IESLKKGDKVLTI---GGIIGTVTKIAE------NTIVIELN 67 (84)
T ss_pred HHhCCCCCEEEEC---CCeEEEEEEEeC------CEEEEEEC
Confidence 5679999999886 578999998874 35555554
No 38
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=21.20 E-value=88 Score=30.84 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.5
Q ss_pred CCCceeCcEEEECCcccEEEEEeeeC
Q psy4533 126 TDSFIIGDRVYVGGTIPGKIAYIGET 151 (365)
Q Consensus 126 ~~~~~vG~rV~v~g~~~G~vryiG~~ 151 (365)
...|++||+|.++|. .|+|.-||-.
T Consensus 127 ~rpf~vGD~I~i~~~-~G~V~~I~~r 151 (286)
T PRK10334 127 FRPFRAGEYVDLGGV-AGTVLSVQIF 151 (286)
T ss_pred cCCCCCCCEEEECCE-EEEEEEEEeE
Confidence 477999999999986 7999999764
No 39
>PRK12281 rplX 50S ribosomal protein L24; Reviewed
Probab=21.14 E-value=1.3e+02 Score=24.19 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=20.7
Q ss_pred CCCccCCEEEEEcC-CCCceEEEEEeccc
Q psy4533 264 NEIRLGDRVIIRSS-QGSKSGVLKYKGDT 291 (365)
Q Consensus 264 ~~l~VGdRV~V~~~-~g~~~GtVRyiG~~ 291 (365)
..|..||+|.|..+ +..+.|+|..+-.-
T Consensus 5 ~~I~kGD~V~Vi~G~dKGK~G~V~~V~~~ 33 (76)
T PRK12281 5 LKVKKGDMVKVIAGDDKGKTGKVLAVLPK 33 (76)
T ss_pred ccccCCCEEEEeEcCCCCcEEEEEEEEcC
Confidence 47899999999874 33667888777543
No 40
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=20.65 E-value=90 Score=26.61 Aligned_cols=33 Identities=33% Similarity=0.493 Sum_probs=25.9
Q ss_pred CCCceeCcEEEECCcccEEEEEeeeCCCCCCceEEEeecc
Q psy4533 126 TDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLD 165 (365)
Q Consensus 126 ~~~~~vG~rV~v~g~~~G~vryiG~~~~~~G~W~GVeelD 165 (365)
...|++||+|...|...|+|.-+.+ ..+=| |.+
T Consensus 50 ~~~Lk~Gd~VvT~gGi~G~Vv~i~~------~~v~l-ei~ 82 (106)
T PRK05585 50 LSSLAKGDEVVTNGGIIGKVTKVSE------DFVII-ELN 82 (106)
T ss_pred HHhcCCCCEEEECCCeEEEEEEEeC------CEEEE-EEC
Confidence 4679999999998888999998864 46666 554
No 41
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=20.05 E-value=2e+02 Score=24.89 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=25.7
Q ss_pred cCCCccCCEEEEEcCCCCceEEEEEeccccCCCCceEEEEec
Q psy4533 263 RNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELD 304 (365)
Q Consensus 263 ~~~l~VGdRV~V~~~~g~~~GtVRyiG~~~~~~G~wvGVELD 304 (365)
...|++||+|.-. ++.+|+|.-++. .++-||+.
T Consensus 36 ~~~Lk~GD~VvT~---gGi~G~V~~I~d------~~v~leia 68 (109)
T PRK05886 36 HESLQPGDRVHTT---SGLQATIVGITD------DTVDLEIA 68 (109)
T ss_pred HHhcCCCCEEEEC---CCeEEEEEEEeC------CEEEEEEC
Confidence 4679999999875 578999998873 46777764
Done!