Query psy4533
Match_columns 365
No_of_seqs 430 out of 1478
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 19:35:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4533.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4533hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rdv_A CAP-Gly domain-containi 99.9 2.6E-27 8.8E-32 186.0 7.7 70 265-337 2-71 (72)
2 2cp3_A CLIP-115, KIAA0291; mic 99.9 6.6E-27 2.3E-31 188.6 8.6 77 263-342 5-81 (84)
3 2cp0_A Clipr-59 protein, clipr 99.9 4.4E-27 1.5E-31 193.6 7.6 78 262-342 13-90 (95)
4 2cp2_A CLIP-115, KIAA0291; mic 99.9 7.5E-27 2.6E-31 192.2 8.5 79 261-342 14-92 (95)
5 2z0w_A CAP-Gly domain-containi 99.9 2.9E-27 1E-31 195.0 5.7 87 263-358 8-94 (96)
6 4b6m_A Tubulin-specific chaper 99.9 1E-26 3.5E-31 187.4 8.4 75 263-339 3-78 (84)
7 1txq_A Dynactin 1; protein com 99.9 9.6E-27 3.3E-31 190.9 8.3 80 262-343 9-88 (93)
8 2e3i_A Restin; CAP-Gly, cytopl 99.9 1.1E-26 3.6E-31 188.2 8.0 74 265-341 2-75 (86)
9 1whh_A Clipr-59; microtubule b 99.9 1.3E-26 4.5E-31 193.0 8.1 77 263-342 23-99 (102)
10 1whl_A Cylindromatosis tumor s 99.9 2.1E-26 7.3E-31 189.4 9.3 79 263-341 5-91 (95)
11 1lpl_A Hypothetical 25.4 kDa p 99.9 1.3E-26 4.5E-31 190.7 7.5 79 261-339 7-86 (95)
12 1whj_A 1700024K14RIK, riken cD 99.9 2E-26 6.9E-31 191.8 8.5 77 263-342 22-98 (102)
13 1whk_A 1700024K14RIK, riken cD 99.9 1.5E-26 5.2E-31 189.0 7.5 79 262-342 9-87 (91)
14 2e3h_A Restin; CAP-Gly, cytopl 99.9 2.3E-26 7.7E-31 187.7 8.4 75 265-342 1-75 (90)
15 1ixd_A Cylindromatosis tumour- 99.9 5.7E-26 2E-30 189.7 10.2 80 262-342 14-94 (104)
16 2coy_A Dynactin-1; microtubule 99.9 7.6E-26 2.6E-30 191.2 10.8 79 262-342 30-108 (112)
17 2cow_A Kinesin-like protein KI 99.9 5.4E-26 1.9E-30 188.6 8.1 76 263-341 21-96 (100)
18 2coz_A CAP350, centrosome-asso 99.9 7.3E-26 2.5E-30 193.8 8.1 77 262-341 28-104 (122)
19 2cp5_A Restin; microtubule bin 99.9 1.6E-25 5.5E-30 195.6 10.3 79 261-342 60-138 (141)
20 1whg_A Tubulin specific chaper 99.9 7.8E-26 2.7E-30 191.4 7.5 79 261-339 28-107 (113)
21 2cp6_A Restin; microtubule bin 99.9 1.7E-25 5.7E-30 200.9 10.0 76 261-339 34-109 (172)
22 1whm_A Cylindromatosis tumor s 99.9 7.8E-25 2.7E-29 178.8 8.7 75 263-337 7-84 (92)
23 1whh_A Clipr-59; microtubule b 99.8 1.1E-20 3.8E-25 157.3 9.9 71 122-202 19-97 (102)
24 2cp0_A Clipr-59 protein, clipr 99.8 4E-21 1.4E-25 158.1 6.4 72 123-204 11-90 (95)
25 1whk_A 1700024K14RIK, riken cD 99.8 8E-21 2.7E-25 155.2 7.9 74 120-203 4-86 (91)
26 2cp2_A CLIP-115, KIAA0291; mic 99.8 8.7E-21 3E-25 156.1 8.0 71 124-204 14-92 (95)
27 1whj_A 1700024K14RIK, riken cD 99.8 7.1E-21 2.4E-25 158.5 7.5 68 126-203 22-97 (102)
28 3rdv_A CAP-Gly domain-containi 99.8 6.4E-21 2.2E-25 149.6 6.8 63 127-199 1-71 (72)
29 2cp3_A CLIP-115, KIAA0291; mic 99.8 2.3E-20 7.7E-25 150.5 8.3 68 126-203 5-80 (84)
30 2cp5_A Restin; microtubule bin 99.8 1.5E-19 5E-24 158.0 14.0 69 124-202 60-136 (141)
31 2cp6_A Restin; microtubule bin 99.8 3.5E-19 1.2E-23 160.0 16.6 71 125-205 35-113 (172)
32 2e3h_A Restin; CAP-Gly, cytopl 99.8 2.7E-20 9.1E-25 151.8 8.0 68 128-205 1-76 (90)
33 4b6m_A Tubulin-specific chaper 99.8 3.8E-20 1.3E-24 149.2 8.0 68 127-204 4-81 (84)
34 2e3i_A Restin; CAP-Gly, cytopl 99.8 3.3E-20 1.1E-24 150.1 7.2 66 127-202 1-74 (86)
35 1txq_A Dynactin 1; protein com 99.8 3.8E-20 1.3E-24 151.7 7.6 70 125-204 9-87 (93)
36 2coz_A CAP350, centrosome-asso 99.8 9.8E-20 3.3E-24 155.9 9.6 71 123-203 26-104 (122)
37 2cow_A Kinesin-like protein KI 99.8 9.8E-20 3.4E-24 151.1 9.1 67 126-202 21-95 (100)
38 2z0w_A CAP-Gly domain-containi 99.8 2.9E-20 9.9E-25 153.3 4.7 68 125-202 7-82 (96)
39 2coy_A Dynactin-1; microtubule 99.8 4.5E-19 1.5E-23 149.8 11.8 69 125-203 30-107 (112)
40 1lpl_A Hypothetical 25.4 kDa p 99.8 1.1E-19 3.6E-24 149.6 7.8 69 127-205 10-90 (95)
41 1ixd_A Cylindromatosis tumour- 99.8 2.3E-19 7.9E-24 149.8 9.0 66 125-200 14-90 (104)
42 1whl_A Cylindromatosis tumor s 99.8 5.1E-19 1.8E-23 145.4 8.2 67 126-202 5-90 (95)
43 1whg_A Tubulin specific chaper 99.8 3.7E-19 1.3E-23 150.6 7.1 69 126-204 30-110 (113)
44 1whm_A Cylindromatosis tumor s 99.6 3.5E-16 1.2E-20 127.8 7.2 66 123-198 4-83 (92)
45 3udc_A Small-conductance mecha 28.5 33 0.0011 31.9 3.0 25 126-151 126-150 (285)
46 1at0_A 17-hedgehog; developmen 27.8 71 0.0024 26.8 4.8 61 262-333 17-79 (145)
47 2vv5_A MSCS, small-conductance 25.3 35 0.0012 31.8 2.6 26 125-151 126-151 (286)
48 3lnn_A Membrane fusion protein 24.5 3.1E+02 0.011 25.3 9.0 77 261-338 217-298 (359)
No 1
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A
Probab=99.94 E-value=2.6e-27 Score=185.97 Aligned_cols=70 Identities=51% Similarity=1.079 Sum_probs=66.5
Q ss_pred CCccCCEEEEEcCCCCceEEEEEeccccCCCCceEEEEecCCCCCCCceECCEEeeecCCCCeeeEecCCccc
Q psy4533 265 EIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSK 337 (365)
Q Consensus 265 ~l~VGdRV~V~~~~g~~~GtVRyiG~~~~~~G~wvGVELDep~GknDGsv~G~rYF~C~p~~GiFV~~~kV~~ 337 (365)
+|+||+||+|. +..+|+|||+|++++++|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|++
T Consensus 2 ~~~vG~rv~v~---g~~~G~VryvG~~~~~~g~w~GVeld~p~GkndGsv~G~rYF~c~p~~G~Fv~~~kvsr 71 (72)
T 3rdv_A 2 DFRVGERVWVN---GNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTR 71 (72)
T ss_dssp CCCTTCEEEET---TTEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESCCCSTTCEEEECGGGEEC
T ss_pred CcccCCEEEEC---CCCEEEEEEeeeCCCCCceEEEEEECCCCCccCCEECCEEeCccCCCCEEEecHHHccc
Confidence 58999999995 45799999999999999999999999999999999999999999999999999999976
No 2
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.94 E-value=6.6e-27 Score=188.61 Aligned_cols=77 Identities=58% Similarity=1.180 Sum_probs=71.3
Q ss_pred cCCCccCCEEEEEcCCCCceEEEEEeccccCCCCceEEEEecCCCCCCCceECCEEeeecCCCCeeeEecCCcccCCCcc
Q psy4533 263 RNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSPVQA 342 (365)
Q Consensus 263 ~~~l~VGdRV~V~~~~g~~~GtVRyiG~~~~~~G~wvGVELDep~GknDGsv~G~rYF~C~p~~GiFV~~~kV~~~~~~~ 342 (365)
...|+|||||+|. +.++|||||||++++++|.|+|||||+|.|||||+++|+|||+|+++||+||++++|.+..+..
T Consensus 5 ~~~~~vG~rv~v~---g~~~GtVryvG~~~~~~G~wvGVelDep~GkndGsv~G~rYF~c~~~~G~Fv~~~kv~~~~~~~ 81 (84)
T 2cp3_A 5 SSGLRLGDRVLVG---GTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKVIRIGSGP 81 (84)
T ss_dssp SCSCCTTCEEEET---TTEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESSCCCTTTEEEEEGGGEEECCCSS
T ss_pred ccccccCCEEEEC---CCCeEEEEEeccCCCCCCeEEEEEeCCCCCcCCCEECCEEeeecCCCeEEEEcHHHeEEcccCC
Confidence 4579999999994 4679999999999999999999999999999999999999999999999999999999877553
No 3
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.94 E-value=4.4e-27 Score=193.61 Aligned_cols=78 Identities=56% Similarity=1.010 Sum_probs=72.9
Q ss_pred ccCCCccCCEEEEEcCCCCceEEEEEeccccCCCCceEEEEecCCCCCCCceECCEEeeecCCCCeeeEecCCcccCCCc
Q psy4533 262 IRNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSPVQ 341 (365)
Q Consensus 262 ~~~~l~VGdRV~V~~~~g~~~GtVRyiG~~~~~~G~wvGVELDep~GknDGsv~G~rYF~C~p~~GiFV~~~kV~~~~~~ 341 (365)
....|+|||||+|. +.++|+|||+|++++++|.|+|||||+|.|||||+|+|+|||+|+++||+||++++|.+.++.
T Consensus 13 ~~~~~~vG~RV~V~---g~~~GtVryvG~v~~~~G~wvGVelDep~GKnDGsv~G~rYF~C~~~~G~Fv~~~kv~~~~~~ 89 (95)
T 2cp0_A 13 SALGLRLGDRVLLD---GQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFASVSKISKAVDA 89 (95)
T ss_dssp HHHTCCTTCEEEET---TTEEEEEEEEECCSSSCSCEEEEEESSSCCSBCSEETTEECCCCSSSCEEEECGGGEEECSCC
T ss_pred cccCCCCCCEEEEC---CCCeEEEEEecccCCCCCcEEEEEecCCCCcCCCEECCEEeeecCCCcEEEEcHHHeecCCCC
Confidence 34679999999994 467999999999999999999999999999999999999999999999999999999998887
Q ss_pred c
Q psy4533 342 A 342 (365)
Q Consensus 342 ~ 342 (365)
.
T Consensus 90 ~ 90 (95)
T 2cp0_A 90 S 90 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 4
>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A
Probab=99.93 E-value=7.5e-27 Score=192.22 Aligned_cols=79 Identities=47% Similarity=0.901 Sum_probs=73.2
Q ss_pred cccCCCccCCEEEEEcCCCCceEEEEEeccccCCCCceEEEEecCCCCCCCceECCEEeeecCCCCeeeEecCCcccCCC
Q psy4533 261 IIRNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSPV 340 (365)
Q Consensus 261 ~~~~~l~VGdRV~V~~~~g~~~GtVRyiG~~~~~~G~wvGVELDep~GknDGsv~G~rYF~C~p~~GiFV~~~kV~~~~~ 340 (365)
..+..|+|||||+|. +.++|||||||++++++|.|+|||||+|.|||||+|+|+|||+|+++||+||++++|.+.+.
T Consensus 14 ~~~~~~~vG~rV~V~---g~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fvr~~kv~~~p~ 90 (95)
T 2cp2_A 14 DFLGDFVVGERVWVN---GVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKLTRQPS 90 (95)
T ss_dssp SSCCSCCTTCEEEGG---GSCEEEEEEEEECSSSCSEEEEEEESSSCSSBBSEETTEECCCCCTTTEEEECGGGCCSSCC
T ss_pred hhhhcCcCCCEEEEC---CceEEEEEEecccCCCCCEEEEEEecCCCCccCCEECCEEecccCCCeEEEEcHHHCccCCC
Confidence 346679999999996 35799999999999999999999999999999999999999999999999999999999886
Q ss_pred cc
Q psy4533 341 QA 342 (365)
Q Consensus 341 ~~ 342 (365)
..
T Consensus 91 ~~ 92 (95)
T 2cp2_A 91 GP 92 (95)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 5
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.93 E-value=2.9e-27 Score=194.97 Aligned_cols=87 Identities=46% Similarity=0.896 Sum_probs=68.7
Q ss_pred cCCCccCCEEEEEcCCCCceEEEEEeccccCCCCceEEEEecCCCCCCCceECCEEeeecCCCCeeeEecCCcccCCCcc
Q psy4533 263 RNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSPVQA 342 (365)
Q Consensus 263 ~~~l~VGdRV~V~~~~g~~~GtVRyiG~~~~~~G~wvGVELDep~GknDGsv~G~rYF~C~p~~GiFV~~~kV~~~~~~~ 342 (365)
...|+|||||+|. +.++|||||+|++++++|.|+|||||+|.|||||+|+|+|||+|+|+||+||++++|....+
T Consensus 8 ~~~~~vG~rV~V~---g~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fv~~~~v~~~~~-- 82 (96)
T 2z0w_A 8 EGELRLGERVLVV---GQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRVQRVTD-- 82 (96)
T ss_dssp ---CCTTCCCCCC---CCCCEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESSCCCTTSEEEECGGGCCCTTC--
T ss_pred cccCCCCCEEEEC---CCcEEEEEEeccCCCCCCeEEEEEeCCCCCCCCCEECCEEeeecCCCeEEEEcHHHceeccc--
Confidence 4679999999995 46799999999999999999999999999999999999999999999999999999998775
Q ss_pred CCccccceeecCCCCC
Q psy4533 343 SGHASKNCVVHPSKDI 358 (365)
Q Consensus 343 ~~~~~~~~~~~~~~~~ 358 (365)
+..++..+++.|
T Consensus 83 ----~~~~~~e~~~~~ 94 (96)
T 2z0w_A 83 ----SLDTLSEISGPS 94 (96)
T ss_dssp ----------------
T ss_pred ----hhhhhhhhcccC
Confidence 355566655544
No 6
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=99.93 E-value=1e-26 Score=187.43 Aligned_cols=75 Identities=37% Similarity=0.816 Sum_probs=67.6
Q ss_pred cCCCccCCEEEEEcCCCCceEEEEEecccc-CCCCceEEEEecCCCCCCCceECCEEeeecCCCCeeeEecCCcccCC
Q psy4533 263 RNEIRLGDRVIIRSSQGSKSGVLKYKGDTY-FADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSP 339 (365)
Q Consensus 263 ~~~l~VGdRV~V~~~~g~~~GtVRyiG~~~-~~~G~wvGVELDep~GknDGsv~G~rYF~C~p~~GiFV~~~kV~~~~ 339 (365)
...|+|||||+|.. +.++|+|||||+++ +++|+|+|||||+|.|||||+++|+|||+|+++||+||++++|+...
T Consensus 3 m~~i~vG~Rv~v~~--~~~~G~VryvG~v~~~~~G~wvGVelDep~GkndGsv~G~rYF~C~~~~G~Fvr~~~v~~gd 78 (84)
T 4b6m_A 3 METIHVGDRCLCRP--GDRLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVFQCQPNYGGFLRPDQVEVGD 78 (84)
T ss_dssp --CCCTTCEEEETT--TTEEEEEEEEEECTTSCSSEEEEEEESSSCCSBSSEETTEESSCCCTTSEEEECGGGEEECC
T ss_pred ccCcccCCEEEEcC--CCeEEEEEEEecCCCCCCCEEEEEEECCCCCCcCCEECCEEEEecCCCeEEEecHHHeEECC
Confidence 45799999999963 46899999999975 68999999999999999999999999999999999999999998864
No 7
>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Probab=99.93 E-value=9.6e-27 Score=190.90 Aligned_cols=80 Identities=38% Similarity=0.709 Sum_probs=69.9
Q ss_pred ccCCCccCCEEEEEcCCCCceEEEEEeccccCCCCceEEEEecCCCCCCCceECCEEeeecCCCCeeeEecCCcccCCCc
Q psy4533 262 IRNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSPVQ 341 (365)
Q Consensus 262 ~~~~l~VGdRV~V~~~~g~~~GtVRyiG~~~~~~G~wvGVELDep~GknDGsv~G~rYF~C~p~~GiFV~~~kV~~~~~~ 341 (365)
....|+|||||.|.. ..++|||||||++++++|.|+|||||+|.|||||+|+|+|||+|+++||+||++++|....+.
T Consensus 9 ~~~~~~vG~rv~v~~--~~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~C~~~~G~Fvr~~~v~~~~~~ 86 (93)
T 1txq_A 9 SARPLRVGSRVEVIG--KGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVFEDG 86 (93)
T ss_dssp --CCCCTTCEEEETT--TCCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESCCCCTTCEEEECGGGEEECC--
T ss_pred ccccCCCCCEEEECC--CCeEEEEEEeeecCCCCCcEEEEEeCCCCCCCCCEECCEEeeecCCCeEEEEcHHHeEEccCC
Confidence 456899999999963 247999999999999999999999999999999999999999999999999999999988776
Q ss_pred cC
Q psy4533 342 AS 343 (365)
Q Consensus 342 ~~ 343 (365)
..
T Consensus 87 ~~ 88 (93)
T 1txq_A 87 AD 88 (93)
T ss_dssp --
T ss_pred CC
Confidence 54
No 8
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Probab=99.93 E-value=1.1e-26 Score=188.16 Aligned_cols=74 Identities=49% Similarity=1.006 Sum_probs=69.4
Q ss_pred CCccCCEEEEEcCCCCceEEEEEeccccCCCCceEEEEecCCCCCCCceECCEEeeecCCCCeeeEecCCcccCCCc
Q psy4533 265 EIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSPVQ 341 (365)
Q Consensus 265 ~l~VGdRV~V~~~~g~~~GtVRyiG~~~~~~G~wvGVELDep~GknDGsv~G~rYF~C~p~~GiFV~~~kV~~~~~~ 341 (365)
+|+|||||+|. +.++|+|||+|++++++|.|+|||||+|.|||||+++|+|||+|+++||+||++++|....+.
T Consensus 2 ~~~vG~rv~v~---g~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~c~~~~G~Fvr~~~v~~~~~~ 75 (86)
T 2e3i_A 2 DFRVGERVWVN---GNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRKVQA 75 (86)
T ss_dssp CCCTTCEEEET---TTEEEEEEEEEECSSSSSEEEEEEESSSCSSBSSEETTEESSCCSTTCEEEECGGGEESSCCC
T ss_pred CccCCCEEEEC---CCcEEEEEEeeeCCCCCCcEEEEEeCCCCCccCCEECCEEeeecCCCeEEEEcHHHcccccch
Confidence 58999999995 467999999999999999999999999999999999999999999999999999999987654
No 9
>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.93 E-value=1.3e-26 Score=192.95 Aligned_cols=77 Identities=48% Similarity=0.952 Sum_probs=71.8
Q ss_pred cCCCccCCEEEEEcCCCCceEEEEEeccccCCCCceEEEEecCCCCCCCceECCEEeeecCCCCeeeEecCCcccCCCcc
Q psy4533 263 RNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSPVQA 342 (365)
Q Consensus 263 ~~~l~VGdRV~V~~~~g~~~GtVRyiG~~~~~~G~wvGVELDep~GknDGsv~G~rYF~C~p~~GiFV~~~kV~~~~~~~ 342 (365)
...|+|||||+|. +.++|||||||++++++|.|+|||||+|.|||||+|+|+|||+|+++||+||++++|.+..+..
T Consensus 23 ~~~~~VG~RV~V~---g~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~~~d~p 99 (102)
T 1whh_A 23 GAKAEVGDQVLVA---GQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVFAPASRIQRIGSGP 99 (102)
T ss_dssp CCSSCTTSEEEET---TTEEEEEEEEEECSSSSSEEEEEECSSSCCSSSSEETTEECSCCCTTTEEEECGGGEEECCSCT
T ss_pred cccCcCCCEEEEC---CCcEEEEEEeeecCCCCCeEEEEEeCCCCCcCCCEECCEEeeecCCCcEEEecHHHeEECCCCC
Confidence 5679999999994 4679999999999999999999999999999999999999999999999999999999877653
No 10
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.93 E-value=2.1e-26 Score=189.40 Aligned_cols=79 Identities=28% Similarity=0.500 Sum_probs=71.8
Q ss_pred cCCCccCCEEEEEcCCC--CceEEEEEecccc---CCCCceEEEEecCC---CCCCCceECCEEeeecCCCCeeeEecCC
Q psy4533 263 RNEIRLGDRVIIRSSQG--SKSGVLKYKGDTY---FADGEWCGVELDDP---LGKNDGSVDGVRYFYCEPRFGVFAPVSK 334 (365)
Q Consensus 263 ~~~l~VGdRV~V~~~~g--~~~GtVRyiG~~~---~~~G~wvGVELDep---~GknDGsv~G~rYF~C~p~~GiFV~~~k 334 (365)
+..|+|||||+|....+ .++|||||||+++ +++|.|+|||||+| .|||||+|+|+|||+|+++||+||++++
T Consensus 5 ~~~~~VG~rV~V~~~~~~~~~~GtVryvG~v~~~~~~~G~wvGVElDep~~~~GKnDGsv~G~rYF~C~~~~G~Fv~~~~ 84 (95)
T 1whl_A 5 SSGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALDK 84 (95)
T ss_dssp CCCCCSSCEEEEECSSSSCEEEEEEEEECCCCSSSSCCCCCEEEEECSSSCSCCSSTTEETTEECCCCCTTTEEEECGGG
T ss_pred cccCcCCCEEEEecCCCccceeEEEEEeCccCcccCCCceEEEEEeCCCcccCCCCCCEECCEEEeecCCCeEEEEcHHH
Confidence 46799999999974333 5899999999998 79999999999999 8999999999999999999999999999
Q ss_pred cccCCCc
Q psy4533 335 VSKSPVQ 341 (365)
Q Consensus 335 V~~~~~~ 341 (365)
|....+.
T Consensus 85 v~~~~~~ 91 (95)
T 1whl_A 85 LELIESG 91 (95)
T ss_dssp EEECCSC
T ss_pred eEEcCcC
Confidence 9987664
No 11
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=99.93 E-value=1.3e-26 Score=190.74 Aligned_cols=79 Identities=41% Similarity=0.793 Sum_probs=71.5
Q ss_pred cccCCCccCCEEEEEcC-CCCceEEEEEeccccCCCCceEEEEecCCCCCCCceECCEEeeecCCCCeeeEecCCcccCC
Q psy4533 261 IIRNEIRLGDRVIIRSS-QGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSP 339 (365)
Q Consensus 261 ~~~~~l~VGdRV~V~~~-~g~~~GtVRyiG~~~~~~G~wvGVELDep~GknDGsv~G~rYF~C~p~~GiFV~~~kV~~~~ 339 (365)
.....|+||+||+|... ...++|||||||++++++|.|+|||||+|.|||||+|+|+|||+|+++||+||++++|....
T Consensus 7 ~~~~~~~vG~rv~V~~~g~~~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fvr~~~v~~gd 86 (95)
T 1lpl_A 7 EAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVRPVDVKVGD 86 (95)
T ss_dssp HHHHTCCTTCEEEECCTTSCCEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECSCCCTTSEEEECGGGEEESC
T ss_pred hhhhcCCCCCEEEEccCCCCceEEEEEEecccCCCCCEEEEEEccCCCCccCCEECCEEEeEeCCCEEEEEcHHHceECC
Confidence 34567999999999732 22689999999999999999999999999999999999999999999999999999998863
No 12
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.93 E-value=2e-26 Score=191.84 Aligned_cols=77 Identities=52% Similarity=1.012 Sum_probs=72.5
Q ss_pred cCCCccCCEEEEEcCCCCceEEEEEeccccCCCCceEEEEecCCCCCCCceECCEEeeecCCCCeeeEecCCcccCCCcc
Q psy4533 263 RNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSPVQA 342 (365)
Q Consensus 263 ~~~l~VGdRV~V~~~~g~~~GtVRyiG~~~~~~G~wvGVELDep~GknDGsv~G~rYF~C~p~~GiFV~~~kV~~~~~~~ 342 (365)
+..|+|||||+|. +.++|+|||||++++.+|.|+|||||+|.|||||+|+|+|||+|+++||+||+++||.+..+..
T Consensus 22 ~~~~~vG~RV~V~---g~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fv~~~kv~~~~~~~ 98 (102)
T 1whj_A 22 SLGLKLGDRVVIA---GQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIFAPLSKISKLKDSG 98 (102)
T ss_dssp HHTCCTTCEEEET---TTEEEEEEEEEECSSSCSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGEEESSSCC
T ss_pred hhcCcCCCEEEEC---CCCEEEEEEeeecCCCCCeEEEEEeCCCCCccCCEECCEEecccCCCeEEEEeHHHccccCCCC
Confidence 4579999999994 4679999999999999999999999999999999999999999999999999999999988875
No 13
>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.93 E-value=1.5e-26 Score=189.03 Aligned_cols=79 Identities=35% Similarity=0.690 Sum_probs=72.3
Q ss_pred ccCCCccCCEEEEEcCCCCceEEEEEeccccCCCCceEEEEecCCCCCCCceECCEEeeecCCCCeeeEecCCcccCCCc
Q psy4533 262 IRNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSPVQ 341 (365)
Q Consensus 262 ~~~~l~VGdRV~V~~~~g~~~GtVRyiG~~~~~~G~wvGVELDep~GknDGsv~G~rYF~C~p~~GiFV~~~kV~~~~~~ 341 (365)
....|+|||||+|.. ..++|+|||||++++++|.|+|||||+|.|||||+|+|+|||+|+++||+||++++|......
T Consensus 9 ~~~~~~vG~rV~V~~--~~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~~~~G~Fvr~~~v~~~~~~ 86 (91)
T 1whk_A 9 GTVKLHEGSQVLLTS--SNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRVTYRGIS 86 (91)
T ss_dssp CCCCCCSSCEEEESS--SCCEEEECCCEECSSSSSEEEEEECSSSCSSCCSEETTEECCCCSTTCCCEECGGGEECCCCC
T ss_pred CCccccCCCEEEECC--CCeEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEECCEEEeecCCCeEEEEchHHcEEcCCC
Confidence 356899999999963 258999999999999999999999999999999999999999999999999999999987655
Q ss_pred c
Q psy4533 342 A 342 (365)
Q Consensus 342 ~ 342 (365)
.
T Consensus 87 g 87 (91)
T 1whk_A 87 G 87 (91)
T ss_dssp C
T ss_pred C
Confidence 4
No 14
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A
Probab=99.93 E-value=2.3e-26 Score=187.68 Aligned_cols=75 Identities=59% Similarity=1.230 Sum_probs=69.4
Q ss_pred CCccCCEEEEEcCCCCceEEEEEeccccCCCCceEEEEecCCCCCCCceECCEEeeecCCCCeeeEecCCcccCCCcc
Q psy4533 265 EIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSPVQA 342 (365)
Q Consensus 265 ~l~VGdRV~V~~~~g~~~GtVRyiG~~~~~~G~wvGVELDep~GknDGsv~G~rYF~C~p~~GiFV~~~kV~~~~~~~ 342 (365)
+|+|||||+|. +.++|+|||+|++++++|.|+|||||+|.|||||+++|+|||+|+++||+||++++|....-..
T Consensus 1 ~l~vG~rV~V~---g~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~C~p~~G~Fv~~~kv~~~~~p~ 75 (90)
T 2e3h_A 1 ELKIGDRVLVG---GTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPS 75 (90)
T ss_dssp CCCTTCEEEET---TTEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESCCCCTTCEEEEEGGGEEETTSCC
T ss_pred CCcCCCEEEEC---CCCEEEEEEeccCCCCCCeEEEEEECCCCCCCCCEECCEEeeecCCCcEEEEcHHHeEECCCCC
Confidence 48999999994 4679999999999999999999999999999999999999999999999999999999875443
No 15
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.93 E-value=5.7e-26 Score=189.74 Aligned_cols=80 Identities=23% Similarity=0.408 Sum_probs=72.5
Q ss_pred ccCCCccCCEEEEEcCCCCceEEEEEeccccCCCCceEEEEe-cCCCCCCCceECCEEeeecCCCCeeeEecCCcccCCC
Q psy4533 262 IRNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVEL-DDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSPV 340 (365)
Q Consensus 262 ~~~~l~VGdRV~V~~~~g~~~GtVRyiG~~~~~~G~wvGVEL-Dep~GknDGsv~G~rYF~C~p~~GiFV~~~kV~~~~~ 340 (365)
....|+|||||+|... +.++|||||||++++++|.|+|||| |+|.|||||+|+|+|||+|+++||+||++++|.....
T Consensus 14 ~~~~l~VG~RV~V~~~-~~~~GtVryvG~v~~~~G~wvGVEldDep~GKnDGsv~G~rYF~C~p~~G~FVr~~~v~~~~r 92 (104)
T 1ixd_A 14 NSHGLEVGSLAEVKEN-PPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSR 92 (104)
T ss_dssp SSSCCCTTSEEEECSS-SCCCEEEEEEECCSSSCCCEEEEEESSCCTTCBSSEETTEECSCCCTTCBEEEEGGGEEECCT
T ss_pred CCcccccCCEEEECcC-CCcEEEEEEecccCCCCceEEEEEecCCCCCCCCCEECCEEeeecCCCcEEEEcHHHceeccc
Confidence 3568999999999732 3689999999999999999999999 8999999999999999999999999999999998665
Q ss_pred cc
Q psy4533 341 QA 342 (365)
Q Consensus 341 ~~ 342 (365)
..
T Consensus 93 f~ 94 (104)
T 1ixd_A 93 FA 94 (104)
T ss_dssp TC
T ss_pred cc
Confidence 54
No 16
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.93 E-value=7.6e-26 Score=191.18 Aligned_cols=79 Identities=37% Similarity=0.713 Sum_probs=72.5
Q ss_pred ccCCCccCCEEEEEcCCCCceEEEEEeccccCCCCceEEEEecCCCCCCCceECCEEeeecCCCCeeeEecCCcccCCCc
Q psy4533 262 IRNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSPVQ 341 (365)
Q Consensus 262 ~~~~l~VGdRV~V~~~~g~~~GtVRyiG~~~~~~G~wvGVELDep~GknDGsv~G~rYF~C~p~~GiFV~~~kV~~~~~~ 341 (365)
....|+|||||+|.. ..++|||||||++++++|.|+|||||+|.|||||+|+|+|||+|+++||+||++++|....+.
T Consensus 30 ~~~~l~VG~RV~V~~--~g~~GtVRyvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFVr~~~v~~~~~~ 107 (112)
T 2coy_A 30 SARPLRVGSRVEVIG--KGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVFEDS 107 (112)
T ss_dssp SCCCCCTTCEEEETT--TCCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECSCCCTTTEEEECGGGEEECCCC
T ss_pred ccccCCCCCEEEECC--CCeEEEEEEeeecCCCCCcEEEEEECCCCCCCCCEECCEEeeecCCCeEEEEchHHeEEcCCC
Confidence 456899999999963 248999999999999999999999999999999999999999999999999999999987765
Q ss_pred c
Q psy4533 342 A 342 (365)
Q Consensus 342 ~ 342 (365)
.
T Consensus 108 ~ 108 (112)
T 2coy_A 108 G 108 (112)
T ss_dssp C
T ss_pred C
Confidence 4
No 17
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.92 E-value=5.4e-26 Score=188.64 Aligned_cols=76 Identities=41% Similarity=0.817 Sum_probs=71.0
Q ss_pred cCCCccCCEEEEEcCCCCceEEEEEeccccCCCCceEEEEecCCCCCCCceECCEEeeecCCCCeeeEecCCcccCCCc
Q psy4533 263 RNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSPVQ 341 (365)
Q Consensus 263 ~~~l~VGdRV~V~~~~g~~~GtVRyiG~~~~~~G~wvGVELDep~GknDGsv~G~rYF~C~p~~GiFV~~~kV~~~~~~ 341 (365)
...|+|||||+|. +.++|+|||||++++++|.|+|||||+|.|||||+|+|+|||+|+++||+||++++|.+....
T Consensus 21 ~~~l~vG~rV~V~---g~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~~~~~ 96 (100)
T 2cow_A 21 PEWLREGEFVTVG---AHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVRRATSG 96 (100)
T ss_dssp CSSCCTTCEEECS---SSCEEEEEEEECCSSSSSCEEEEECSSSCCSCSSEETTEECCCSCTTCCEEECGGGCEECCCC
T ss_pred CccccCCCEEEEC---CCcEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEECCEEeeecCCCeEEEecHHHeeECCCC
Confidence 5579999999994 368999999999999999999999999999999999999999999999999999999987654
No 18
>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.92 E-value=7.3e-26 Score=193.77 Aligned_cols=77 Identities=45% Similarity=0.930 Sum_probs=72.0
Q ss_pred ccCCCccCCEEEEEcCCCCceEEEEEeccccCCCCceEEEEecCCCCCCCceECCEEeeecCCCCeeeEecCCcccCCCc
Q psy4533 262 IRNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSPVQ 341 (365)
Q Consensus 262 ~~~~l~VGdRV~V~~~~g~~~GtVRyiG~~~~~~G~wvGVELDep~GknDGsv~G~rYF~C~p~~GiFV~~~kV~~~~~~ 341 (365)
....|+||+||.|. +.++|||||||++++++|.|+|||||+|.|||||+|+|+|||+|+++||+||++++|...++.
T Consensus 28 ~~~~l~VG~RV~V~---g~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVr~~kv~~~pe~ 104 (122)
T 2coz_A 28 ELFDFHIGDRVLIG---NVQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKISHIPEN 104 (122)
T ss_dssp SCSSCCTTEEEEET---TTEEEEEEEEEECSSSSSEEEEEEESSTTSSBCSEETTEECCCCCSSCEEEECGGGEECCCTT
T ss_pred ccccCcCCCEEEEC---CCcEEEEEEecccCCCCCeEEEEEeCCCCCccCCEECCEEeeecCCCcEEEecHHHCccCCcc
Confidence 35689999999995 358999999999999999999999999999999999999999999999999999999987765
No 19
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.92 E-value=1.6e-25 Score=195.62 Aligned_cols=79 Identities=46% Similarity=0.936 Sum_probs=72.8
Q ss_pred cccCCCccCCEEEEEcCCCCceEEEEEeccccCCCCceEEEEecCCCCCCCceECCEEeeecCCCCeeeEecCCcccCCC
Q psy4533 261 IIRNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSPV 340 (365)
Q Consensus 261 ~~~~~l~VGdRV~V~~~~g~~~GtVRyiG~~~~~~G~wvGVELDep~GknDGsv~G~rYF~C~p~~GiFV~~~kV~~~~~ 340 (365)
.....|+|||||+|. +.++|+|||||+++|.+|.|+|||||+|.|||||+|+|+|||+|.++||+||++++|.+..+
T Consensus 60 ~~~~~l~VG~RV~V~---G~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVrp~kv~~~~~ 136 (141)
T 2cp5_A 60 EFVDDFRVGERVWVN---GNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRKVS 136 (141)
T ss_dssp CCCCCCCTTCEEEET---TSCEEEEEEEEECSSSSSEEEEEEESSSCCSCBSEETTEESSCCCTTTEEEECGGGEESSCC
T ss_pred hhhhcCcCCCEEEEC---CCcEEEEEEeeecCCCCCcEEEEEeCCCCCccCCEECCEEeeecCCCcEEEechHHeeeccC
Confidence 346789999999995 46799999999999999999999999999999999999999999999999999999998775
Q ss_pred cc
Q psy4533 341 QA 342 (365)
Q Consensus 341 ~~ 342 (365)
..
T Consensus 137 ~~ 138 (141)
T 2cp5_A 137 GP 138 (141)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 20
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.92 E-value=7.8e-26 Score=191.41 Aligned_cols=79 Identities=41% Similarity=0.778 Sum_probs=71.5
Q ss_pred cccCCCccCCEEEEEc-CCCCceEEEEEeccccCCCCceEEEEecCCCCCCCceECCEEeeecCCCCeeeEecCCcccCC
Q psy4533 261 IIRNEIRLGDRVIIRS-SQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSP 339 (365)
Q Consensus 261 ~~~~~l~VGdRV~V~~-~~g~~~GtVRyiG~~~~~~G~wvGVELDep~GknDGsv~G~rYF~C~p~~GiFV~~~kV~~~~ 339 (365)
.....|.||+||+|.. ....++|||||||++++++|.|+|||||+|.|||||+|+|+|||+|+++||+||++++|....
T Consensus 28 ~~~~~~~VG~RV~V~~~g~~~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~gd 107 (113)
T 1whg_A 28 AQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVGD 107 (113)
T ss_dssp HHHTTSCSSCEEEECCSSSSCEEEEEEEEEECSSSSSEEEEEEESSSCCSBBSEETTEECSCCCTTTEEEECGGGEEEEE
T ss_pred hhhhcCCCCCEEEEecCCCcceEEEEEEecccCCCCCEEEEEEecCCCCccCCEECCEEEeeeCCCeEEEECHHHeEECC
Confidence 4567899999999963 223689999999999999999999999999999999999999999999999999999998653
No 21
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.92 E-value=1.7e-25 Score=200.91 Aligned_cols=76 Identities=58% Similarity=1.184 Sum_probs=70.7
Q ss_pred cccCCCccCCEEEEEcCCCCceEEEEEeccccCCCCceEEEEecCCCCCCCceECCEEeeecCCCCeeeEecCCcccCC
Q psy4533 261 IIRNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSP 339 (365)
Q Consensus 261 ~~~~~l~VGdRV~V~~~~g~~~GtVRyiG~~~~~~G~wvGVELDep~GknDGsv~G~rYF~C~p~~GiFV~~~kV~~~~ 339 (365)
....+|+|||||+|. +.++|+|||||+++|.+|.|+|||||+|.|||||+|+|+|||+|+++||+||++++|....
T Consensus 34 ~~~~~l~VG~RV~V~---g~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVr~~kV~~~d 109 (172)
T 2cp6_A 34 KGERELKIGDRVLVG---GTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIG 109 (172)
T ss_dssp CCSSCCCSSCEEEET---TTEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGCEECC
T ss_pred cCCccCccCCEEEEC---CCceEEEEEeCcCCCCCCcEEEEEecCCCCccCCEECCEEeeeeCCCeEEEechHHeEECC
Confidence 346789999999994 4689999999999999999999999999999999999999999999999999999998753
No 22
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.91 E-value=7.8e-25 Score=178.78 Aligned_cols=75 Identities=20% Similarity=0.382 Sum_probs=68.4
Q ss_pred cCCCccCCEEEEEcCCCCceEEEEEeccccCC--CCceEEEEecCCCCCCCceECCEEee-ecCCCCeeeEecCCccc
Q psy4533 263 RNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFA--DGEWCGVELDDPLGKNDGSVDGVRYF-YCEPRFGVFAPVSKVSK 337 (365)
Q Consensus 263 ~~~l~VGdRV~V~~~~g~~~GtVRyiG~~~~~--~G~wvGVELDep~GknDGsv~G~rYF-~C~p~~GiFV~~~kV~~ 337 (365)
...|+||+||+|...+..++|||||||.+++. .|+|||||||||+|||||+|+|+||| +|+++||+||++.++..
T Consensus 7 ~~~i~VG~Rc~V~~~~~~rrGtVrfvG~~~~~~~~G~wVGVelDEP~GknDGsv~G~ryF~~c~~~~g~fV~~~d~~~ 84 (92)
T 1whm_A 7 GPPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHINDIIP 84 (92)
T ss_dssp SCSSCTTCEEEEEETTEEEEEEEEEEECCTTCTTTCCEEEEEESSSCCCCCSEETTEESCSSCCTTTEEEEEGGGEEE
T ss_pred ccCccccCeEEEcCCCceeeEEEEEEecCCCcCCCCeEEEEEcCCCCCCCCCeECCEEeccccCCCcceEcccccCcc
Confidence 56799999999986544689999999999875 69999999999999999999999999 99999999999999954
No 23
>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.83 E-value=1.1e-20 Score=157.26 Aligned_cols=71 Identities=30% Similarity=0.576 Sum_probs=64.7
Q ss_pred cCCCCCCceeCcEEEECCcccEEEEEeeeCCCCCCceEEEeeccCCCC--------eeEEecCCCCcccccccceeEEEe
Q psy4533 122 SMDSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPDR--------ARIRHCPRASAISNAIRSTAIFSR 193 (365)
Q Consensus 122 ~~~~~~~~~vG~rV~v~g~~~G~vryiG~~~~~~G~W~GVeelDep~G--------~rYF~C~~~~~~~~~~p~~G~Fvr 193 (365)
.+.....|+|||||.|.|.++|+|||||+++|++|+|+|| |||||.| +|||+|++ +||+|++
T Consensus 19 ~~~~~~~~~VG~RV~V~g~~~GtVryvG~v~~~~G~wvGV-ElDep~GKnDGsv~G~rYF~C~p---------~~GiFvr 88 (102)
T 1whh_A 19 QQREGAKAEVGDQVLVAGQKQGIVRFYGKTDFAPGYWYGI-ELDQPTGKHDGSVFGVRYFTCAP---------RHGVFAP 88 (102)
T ss_dssp SCSSCCSSCTTSEEEETTTEEEEEEEEEECSSSSSEEEEE-ECSSSCCSSSSEETTEECSCCCT---------TTEEEEC
T ss_pred cccccccCcCCCEEEECCCcEEEEEEeeecCCCCCeEEEE-EeCCCCCcCCCEECCEEeeecCC---------CcEEEec
Confidence 3455678999999999998899999999999999999999 8999986 99999999 9999999
Q ss_pred CCceeecCC
Q psy4533 194 LNALTRSPS 202 (365)
Q Consensus 194 ~skV~k~~~ 202 (365)
+++|++...
T Consensus 89 ~~~v~~~~d 97 (102)
T 1whh_A 89 ASRIQRIGS 97 (102)
T ss_dssp GGGEEECCS
T ss_pred HHHeEECCC
Confidence 999997644
No 24
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.83 E-value=4e-21 Score=158.14 Aligned_cols=72 Identities=31% Similarity=0.679 Sum_probs=65.2
Q ss_pred CCCCCCceeCcEEEECCcccEEEEEeeeCCCCCCceEEEeeccCCCC--------eeEEecCCCCcccccccceeEEEeC
Q psy4533 123 MDSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPDR--------ARIRHCPRASAISNAIRSTAIFSRL 194 (365)
Q Consensus 123 ~~~~~~~~vG~rV~v~g~~~G~vryiG~~~~~~G~W~GVeelDep~G--------~rYF~C~~~~~~~~~~p~~G~Fvr~ 194 (365)
|.....|+|||||.|.|.++|+|||||+++|++|+|+|| |||||.| +|||+|++ +||+|+++
T Consensus 11 ~~~~~~~~vG~RV~V~g~~~GtVryvG~v~~~~G~wvGV-elDep~GKnDGsv~G~rYF~C~~---------~~G~Fv~~ 80 (95)
T 2cp0_A 11 MLSALGLRLGDRVLLDGQKTGTLRFCGTTEFASGQWVGV-ELDEPEGKNDGSVGGVRYFICPP---------KQGLFASV 80 (95)
T ss_dssp HHHHHTCCTTCEEEETTTEEEEEEEEECCSSSCSCEEEE-EESSSCCSBCSEETTEECCCCSS---------SCEEEECG
T ss_pred cccccCCCCCCEEEECCCCeEEEEEecccCCCCCcEEEE-EecCCCCcCCCEECCEEeeecCC---------CcEEEEcH
Confidence 344567999999999998899999999999999999999 8999975 99999999 99999999
Q ss_pred CceeecCCCC
Q psy4533 195 NALTRSPSPT 204 (365)
Q Consensus 195 skV~k~~~~~ 204 (365)
++|.+.+..+
T Consensus 81 ~kv~~~~~~~ 90 (95)
T 2cp0_A 81 SKISKAVDAS 90 (95)
T ss_dssp GGEEECSCCC
T ss_pred HHeecCCCCC
Confidence 9999887643
No 25
>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.83 E-value=8e-21 Score=155.22 Aligned_cols=74 Identities=22% Similarity=0.325 Sum_probs=66.0
Q ss_pred cccCCCCCCceeCcEEEECC-cccEEEEEeeeCCCCCCceEEEeeccCCCC--------eeEEecCCCCcccccccceeE
Q psy4533 120 LYSMDSTDSFIIGDRVYVGG-TIPGKIAYIGETKFGPGDWAGKNRLDEPDR--------ARIRHCPRASAISNAIRSTAI 190 (365)
Q Consensus 120 ~~~~~~~~~~~vG~rV~v~g-~~~G~vryiG~~~~~~G~W~GVeelDep~G--------~rYF~C~~~~~~~~~~p~~G~ 190 (365)
.+.++....|+|||||+|.+ .++|+|||||+++|++|+|+|| |||+|.| +|||+|++ +||+
T Consensus 4 ~s~~~~~~~~~vG~rV~V~~~~~~GtVryvG~v~~~~G~wvGV-ElDep~GKnDGsv~G~rYF~C~~---------~~G~ 73 (91)
T 1whk_A 4 GSSGEGTVKLHEGSQVLLTSSNEMATVRYVGPTDFASGIWLGL-ELRSAKGKNDGAVGDKRYFTCKP---------NYGV 73 (91)
T ss_dssp SSSSCCCCCCCSSCEEEESSSCCEEEECCCEECSSSSSEEEEE-ECSSSCSSCCSEETTEECCCCST---------TCCC
T ss_pred CCCCCCCccccCCCEEEECCCCeEEEEEEeeeCCCCCCeEEEE-EeCCCCCcCCCEECCEEEeecCC---------CeEE
Confidence 33456678899999999985 5789999999999999999999 8999986 99999999 9999
Q ss_pred EEeCCceeecCCC
Q psy4533 191 FSRLNALTRSPSP 203 (365)
Q Consensus 191 Fvr~skV~k~~~~ 203 (365)
|+++++|+....+
T Consensus 74 Fvr~~~v~~~~~~ 86 (91)
T 1whk_A 74 LVRPSRVTYRGIS 86 (91)
T ss_dssp EECGGGEECCCCC
T ss_pred EEchHHcEEcCCC
Confidence 9999999987664
No 26
>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A
Probab=99.83 E-value=8.7e-21 Score=156.12 Aligned_cols=71 Identities=46% Similarity=0.914 Sum_probs=64.9
Q ss_pred CCCCCceeCcEEEECCcccEEEEEeeeCCCCCCceEEEeeccCCCC--------eeEEecCCCCcccccccceeEEEeCC
Q psy4533 124 DSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPDR--------ARIRHCPRASAISNAIRSTAIFSRLN 195 (365)
Q Consensus 124 ~~~~~~~vG~rV~v~g~~~G~vryiG~~~~~~G~W~GVeelDep~G--------~rYF~C~~~~~~~~~~p~~G~Fvr~s 195 (365)
+....|+|||||.|.|.++|+|||||+++|++|+|+|| |||+|.| +|||+|++ +||+|++++
T Consensus 14 ~~~~~~~vG~rV~V~g~~~GtVryvG~v~~~~G~wvGV-ElDep~GKnDGsv~G~rYF~C~p---------~~G~Fvr~~ 83 (95)
T 2cp2_A 14 DFLGDFVVGERVWVNGVKPGVVQYLGETQFAPGQWAGV-VLDDPVGKNDGAVGGVRYFECPA---------LQGIFTRPS 83 (95)
T ss_dssp SSCCSCCTTCEEEGGGSCEEEEEEEEECSSSCSEEEEE-EESSSCSSBBSEETTEECCCCCT---------TTEEEECGG
T ss_pred hhhhcCcCCCEEEECCceEEEEEEecccCCCCCEEEEE-EecCCCCccCCEECCEEecccCC---------CeEEEEcHH
Confidence 34467999999999988899999999999999999999 8999986 99999999 999999999
Q ss_pred ceeecCCCC
Q psy4533 196 ALTRSPSPT 204 (365)
Q Consensus 196 kV~k~~~~~ 204 (365)
+|.+.+..+
T Consensus 84 kv~~~p~~~ 92 (95)
T 2cp2_A 84 KLTRQPSGP 92 (95)
T ss_dssp GCCSSCCSS
T ss_pred HCccCCCCC
Confidence 999887754
No 27
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.83 E-value=7.1e-21 Score=158.46 Aligned_cols=68 Identities=31% Similarity=0.665 Sum_probs=63.3
Q ss_pred CCCceeCcEEEECCcccEEEEEeeeCCCCCCceEEEeeccCCCC--------eeEEecCCCCcccccccceeEEEeCCce
Q psy4533 126 TDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPDR--------ARIRHCPRASAISNAIRSTAIFSRLNAL 197 (365)
Q Consensus 126 ~~~~~vG~rV~v~g~~~G~vryiG~~~~~~G~W~GVeelDep~G--------~rYF~C~~~~~~~~~~p~~G~Fvr~skV 197 (365)
...|+|||||.|.|.++|+|||||+++|++|.|+|| |||||.| +|||+|++ +||+|+++++|
T Consensus 22 ~~~~~vG~RV~V~g~~~GtVryvG~v~~~~G~wvGV-ElDep~GKnDGsv~G~rYF~C~p---------~~G~Fv~~~kv 91 (102)
T 1whj_A 22 SLGLKLGDRVVIAGQKVGTLRFCGTTEFASGQWAGI-ELDEPEGKNNGSVGRVQYFKCAP---------KYGIFAPLSKI 91 (102)
T ss_dssp HHTCCTTCEEEETTTEEEEEEEEEECSSSCSEEEEE-EESSSCCSBSSEETTEECCCCCT---------TTEEEEEGGGE
T ss_pred hhcCcCCCEEEECCCCEEEEEEeeecCCCCCeEEEE-EeCCCCCccCCEECCEEecccCC---------CeEEEEeHHHc
Confidence 457999999999998899999999999999999999 8999986 99999999 99999999999
Q ss_pred eecCCC
Q psy4533 198 TRSPSP 203 (365)
Q Consensus 198 ~k~~~~ 203 (365)
.+.+++
T Consensus 92 ~~~~~~ 97 (102)
T 1whj_A 92 SKLKDS 97 (102)
T ss_dssp EESSSC
T ss_pred cccCCC
Confidence 988664
No 28
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A
Probab=99.83 E-value=6.4e-21 Score=149.59 Aligned_cols=63 Identities=49% Similarity=0.921 Sum_probs=59.1
Q ss_pred CCceeCcEEEECCcccEEEEEeeeCCCCCCceEEEeeccCCCC--------eeEEecCCCCcccccccceeEEEeCCcee
Q psy4533 127 DSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPDR--------ARIRHCPRASAISNAIRSTAIFSRLNALT 198 (365)
Q Consensus 127 ~~~~vG~rV~v~g~~~G~vryiG~~~~~~G~W~GVeelDep~G--------~rYF~C~~~~~~~~~~p~~G~Fvr~skV~ 198 (365)
++|+|||||.|.+.++|+|||||++++++|.|+|| |||||.| +|||+|++ +||+|+++++|+
T Consensus 1 d~~~vG~rv~v~g~~~G~VryvG~~~~~~g~w~GV-eld~p~GkndGsv~G~rYF~c~p---------~~G~Fv~~~kvs 70 (72)
T 3rdv_A 1 DDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGI-VLDEPIGKNDGSVAGVRYFQCEP---------LKGIFTRPSKLT 70 (72)
T ss_dssp -CCCTTCEEEETTTEEEEEEEEECCSSSSSCEEEE-EESSSCSSBSSEETTEESCCCST---------TCEEEECGGGEE
T ss_pred CCcccCCEEEECCCCEEEEEEeeeCCCCCceEEEE-EECCCCCccCCEECCEEeCccCC---------CCEEEecHHHcc
Confidence 46899999999998889999999999999999999 8999976 99999999 999999999998
Q ss_pred e
Q psy4533 199 R 199 (365)
Q Consensus 199 k 199 (365)
+
T Consensus 71 r 71 (72)
T 3rdv_A 71 R 71 (72)
T ss_dssp C
T ss_pred c
Confidence 6
No 29
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.82 E-value=2.3e-20 Score=150.50 Aligned_cols=68 Identities=40% Similarity=0.783 Sum_probs=62.9
Q ss_pred CCCceeCcEEEECCcccEEEEEeeeCCCCCCceEEEeeccCCCC--------eeEEecCCCCcccccccceeEEEeCCce
Q psy4533 126 TDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPDR--------ARIRHCPRASAISNAIRSTAIFSRLNAL 197 (365)
Q Consensus 126 ~~~~~vG~rV~v~g~~~G~vryiG~~~~~~G~W~GVeelDep~G--------~rYF~C~~~~~~~~~~p~~G~Fvr~skV 197 (365)
...|+|||||+|.+.++|+|||||++++++|.|+|| |||||.| +|||+|++ +||+|+++++|
T Consensus 5 ~~~~~vG~rv~v~g~~~GtVryvG~~~~~~G~wvGV-elDep~GkndGsv~G~rYF~c~~---------~~G~Fv~~~kv 74 (84)
T 2cp3_A 5 SSGLRLGDRVLVGGTKTGVVRYVGETDFAKGEWCGV-ELDEPLGKNDGAVAGTRYFQCPP---------KFGLFAPIHKV 74 (84)
T ss_dssp SCSCCTTCEEEETTTEEEEEEEEEECSSSSSEEEEE-EESSSCCSBSSEETTEESSCCCT---------TTEEEEEGGGE
T ss_pred ccccccCCEEEECCCCeEEEEEeccCCCCCCeEEEE-EeCCCCCcCCCEECCEEeeecCC---------CeEEEEcHHHe
Confidence 367999999999988899999999999999999999 8999975 99999999 99999999999
Q ss_pred eecCCC
Q psy4533 198 TRSPSP 203 (365)
Q Consensus 198 ~k~~~~ 203 (365)
.+....
T Consensus 75 ~~~~~~ 80 (84)
T 2cp3_A 75 IRIGSG 80 (84)
T ss_dssp EECCCS
T ss_pred EEcccC
Confidence 987653
No 30
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.82 E-value=1.5e-19 Score=158.02 Aligned_cols=69 Identities=46% Similarity=0.843 Sum_probs=63.5
Q ss_pred CCCCCceeCcEEEECCcccEEEEEeeeCCCCCCceEEEeeccCCCC--------eeEEecCCCCcccccccceeEEEeCC
Q psy4533 124 DSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPDR--------ARIRHCPRASAISNAIRSTAIFSRLN 195 (365)
Q Consensus 124 ~~~~~~~vG~rV~v~g~~~G~vryiG~~~~~~G~W~GVeelDep~G--------~rYF~C~~~~~~~~~~p~~G~Fvr~s 195 (365)
+....|+|||||+|.|.++|+|||||+++|.+|+|+|| |||||.| +|||+|++ +||+|++++
T Consensus 60 ~~~~~l~VG~RV~V~G~~~GtVRyvG~v~~~~G~WvGV-ELDeP~GKnDGsv~G~rYF~C~p---------~~GiFVrp~ 129 (141)
T 2cp5_A 60 EFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGI-VLDEPIGKNDGSVAGVRYFQCEP---------LKGIFTRPS 129 (141)
T ss_dssp CCCCCCCTTCEEEETTSCEEEEEEEEECSSSSSEEEEE-EESSSCCSCBSEETTEESSCCCT---------TTEEEECGG
T ss_pred hhhhcCcCCCEEEECCCcEEEEEEeeecCCCCCcEEEE-EeCCCCCccCCEECCEEeeecCC---------CcEEEechH
Confidence 44567999999999998899999999999999999999 8999986 99999999 999999999
Q ss_pred ceeecCC
Q psy4533 196 ALTRSPS 202 (365)
Q Consensus 196 kV~k~~~ 202 (365)
+|.+...
T Consensus 130 kv~~~~~ 136 (141)
T 2cp5_A 130 KLTRKVS 136 (141)
T ss_dssp GEESSCC
T ss_pred HeeeccC
Confidence 9998754
No 31
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.81 E-value=3.5e-19 Score=160.00 Aligned_cols=71 Identities=37% Similarity=0.733 Sum_probs=66.2
Q ss_pred CCCCceeCcEEEECCcccEEEEEeeeCCCCCCceEEEeeccCCCC--------eeEEecCCCCcccccccceeEEEeCCc
Q psy4533 125 STDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPDR--------ARIRHCPRASAISNAIRSTAIFSRLNA 196 (365)
Q Consensus 125 ~~~~~~vG~rV~v~g~~~G~vryiG~~~~~~G~W~GVeelDep~G--------~rYF~C~~~~~~~~~~p~~G~Fvr~sk 196 (365)
....|+|||||+|.|.++|+|||||+++|.+|+|+|| |||||.| +|||+|++ +||+|+++++
T Consensus 35 ~~~~l~VG~RV~V~g~~~GtVRyvG~v~~~~G~WvGV-ELDeP~GKnDGsv~G~rYF~C~p---------~~GiFVr~~k 104 (172)
T 2cp6_A 35 GERELKIGDRVLVGGTKAGVVRFLGETDFAKGEWCGV-ELDEPLGKNDGAVAGTRYFQCQP---------KYGLFAPVHK 104 (172)
T ss_dssp CSSCCCSSCEEEETTTEEEEEEEEEECSSSSSEEEEE-EESSSCCSBSSEETTEECCCCCT---------TTEEEEEGGG
T ss_pred CCccCccCCEEEECCCceEEEEEeCcCCCCCCcEEEE-EecCCCCccCCEECCEEeeeeCC---------CeEEEechHH
Confidence 4578999999999998899999999999999999999 8999975 99999999 9999999999
Q ss_pred eeecCCCCC
Q psy4533 197 LTRSPSPTS 205 (365)
Q Consensus 197 V~k~~~~~~ 205 (365)
|+...++..
T Consensus 105 V~~~dfP~~ 113 (172)
T 2cp6_A 105 VTKIGFPST 113 (172)
T ss_dssp CEECCCSSC
T ss_pred eEECCcCCC
Confidence 999988764
No 32
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A
Probab=99.81 E-value=2.7e-20 Score=151.84 Aligned_cols=68 Identities=38% Similarity=0.765 Sum_probs=63.5
Q ss_pred CceeCcEEEECCcccEEEEEeeeCCCCCCceEEEeeccCCCC--------eeEEecCCCCcccccccceeEEEeCCceee
Q psy4533 128 SFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPDR--------ARIRHCPRASAISNAIRSTAIFSRLNALTR 199 (365)
Q Consensus 128 ~~~vG~rV~v~g~~~G~vryiG~~~~~~G~W~GVeelDep~G--------~rYF~C~~~~~~~~~~p~~G~Fvr~skV~k 199 (365)
+|+|||||.|.|.+.|+|||||++++++|.|+|| |||+|.| +|||+|++ +||+|+++++|+.
T Consensus 1 ~l~vG~rV~V~g~~~GtVryvG~~~~~~G~wvGV-elDep~GKndGsv~G~rYF~C~p---------~~G~Fv~~~kv~~ 70 (90)
T 2e3h_A 1 ELKIGDRVLVGGTKAGVVRFLGETDFAKGEWCGV-ELDEPLGKNDGAVAGTRYFQCQP---------KYGLFAPVHKVTK 70 (90)
T ss_dssp CCCTTCEEEETTTEEEEEEEEEECSSSSSEEEEE-EESSSCCSBSSEETTEESCCCCT---------TCEEEEEGGGEEE
T ss_pred CCcCCCEEEECCCCEEEEEEeccCCCCCCeEEEE-EECCCCCCCCCEECCEEeeecCC---------CcEEEEcHHHeEE
Confidence 4789999999998899999999999999999999 8999975 99999999 9999999999999
Q ss_pred cCCCCC
Q psy4533 200 SPSPTS 205 (365)
Q Consensus 200 ~~~~~~ 205 (365)
..++..
T Consensus 71 ~~~p~~ 76 (90)
T 2e3h_A 71 IGFPST 76 (90)
T ss_dssp TTSCCC
T ss_pred CCCCCC
Confidence 988754
No 33
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=99.81 E-value=3.8e-20 Score=149.18 Aligned_cols=68 Identities=26% Similarity=0.583 Sum_probs=61.3
Q ss_pred CCceeCcEEEEC-CcccEEEEEeeeC-CCCCCceEEEeeccCCCC--------eeEEecCCCCcccccccceeEEEeCCc
Q psy4533 127 DSFIIGDRVYVG-GTIPGKIAYIGET-KFGPGDWAGKNRLDEPDR--------ARIRHCPRASAISNAIRSTAIFSRLNA 196 (365)
Q Consensus 127 ~~~~vG~rV~v~-g~~~G~vryiG~~-~~~~G~W~GVeelDep~G--------~rYF~C~~~~~~~~~~p~~G~Fvr~sk 196 (365)
.+|+|||||+|. +.++|+|||||++ .+++|+|+|| |||+|.| +|||+|++ +||+|+++++
T Consensus 4 ~~i~vG~Rv~v~~~~~~G~VryvG~v~~~~~G~wvGV-elDep~GkndGsv~G~rYF~C~~---------~~G~Fvr~~~ 73 (84)
T 4b6m_A 4 ETIHVGDRCLCRPGDRLGSVRFVGRVASLKPGYWVGV-EFDEPVGKGDGTVKGTRVFQCQP---------NYGGFLRPDQ 73 (84)
T ss_dssp -CCCTTCEEEETTTTEEEEEEEEEECTTSCSSEEEEE-EESSSCCSBSSEETTEESSCCCT---------TSEEEECGGG
T ss_pred cCcccCCEEEEcCCCeEEEEEEEecCCCCCCCEEEEE-EECCCCCCcCCEECCEEEEecCC---------CeEEEecHHH
Confidence 578999999996 5578999999996 6799999999 8999986 99999999 9999999999
Q ss_pred eeecCCCC
Q psy4533 197 LTRSPSPT 204 (365)
Q Consensus 197 V~k~~~~~ 204 (365)
|+...+|.
T Consensus 74 v~~gd~Pp 81 (84)
T 4b6m_A 74 VEVGDFPP 81 (84)
T ss_dssp EEECCCCC
T ss_pred eEECCcCC
Confidence 99987764
No 34
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Probab=99.81 E-value=3.3e-20 Score=150.11 Aligned_cols=66 Identities=47% Similarity=0.871 Sum_probs=61.3
Q ss_pred CCceeCcEEEECCcccEEEEEeeeCCCCCCceEEEeeccCCCC--------eeEEecCCCCcccccccceeEEEeCCcee
Q psy4533 127 DSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPDR--------ARIRHCPRASAISNAIRSTAIFSRLNALT 198 (365)
Q Consensus 127 ~~~~vG~rV~v~g~~~G~vryiG~~~~~~G~W~GVeelDep~G--------~rYF~C~~~~~~~~~~p~~G~Fvr~skV~ 198 (365)
++|+|||||.|.|.++|+|||||++++++|.|+|| |||+|.| +|||+|++ +||+|+++++|.
T Consensus 1 d~~~vG~rv~v~g~~~GtVryvG~~~~~~G~wvGV-elDep~GKndGsv~G~rYF~c~~---------~~G~Fvr~~~v~ 70 (86)
T 2e3i_A 1 DDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGI-VLDEPIGKNDGSVAGVRYFQCEP---------LKGIFTRPSKLT 70 (86)
T ss_dssp CCCCTTCEEEETTTEEEEEEEEEECSSSSSEEEEE-EESSSCSSBSSEETTEESSCCST---------TCEEEECGGGEE
T ss_pred CCccCCCEEEECCCcEEEEEEeeeCCCCCCcEEEE-EeCCCCCccCCEECCEEeeecCC---------CeEEEEcHHHcc
Confidence 46899999999988899999999999999999999 8999986 99999999 999999999998
Q ss_pred ecCC
Q psy4533 199 RSPS 202 (365)
Q Consensus 199 k~~~ 202 (365)
....
T Consensus 71 ~~~~ 74 (86)
T 2e3i_A 71 RKVQ 74 (86)
T ss_dssp SSCC
T ss_pred cccc
Confidence 7644
No 35
>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Probab=99.80 E-value=3.8e-20 Score=151.74 Aligned_cols=70 Identities=31% Similarity=0.542 Sum_probs=60.6
Q ss_pred CCCCceeCcEEEECC-cccEEEEEeeeCCCCCCceEEEeeccCCCC--------eeEEecCCCCcccccccceeEEEeCC
Q psy4533 125 STDSFIIGDRVYVGG-TIPGKIAYIGETKFGPGDWAGKNRLDEPDR--------ARIRHCPRASAISNAIRSTAIFSRLN 195 (365)
Q Consensus 125 ~~~~~~vG~rV~v~g-~~~G~vryiG~~~~~~G~W~GVeelDep~G--------~rYF~C~~~~~~~~~~p~~G~Fvr~s 195 (365)
....|+|||||.|.+ .++|+|||||++++++|.|+|| |||+|.| +|||+|++ +||+|++++
T Consensus 9 ~~~~~~vG~rv~v~~~~~~GtVryvG~~~~~~G~wvGV-elDep~GKndGsv~G~rYF~C~~---------~~G~Fvr~~ 78 (93)
T 1txq_A 9 SARPLRVGSRVEVIGKGHRGTVAYVGATLFATGKWVGV-ILDEAKGKNDGTVQGRKYFTCDE---------GHGIFVRQS 78 (93)
T ss_dssp --CCCCTTCEEEETTTCCEEEEEEEECCSSSSSCEEEE-EESSSCSSBSSEETTEESCCCCT---------TCEEEECGG
T ss_pred ccccCCCCCEEEECCCCeEEEEEEeeecCCCCCcEEEE-EeCCCCCCCCCEECCEEeeecCC---------CeEEEEcHH
Confidence 346799999999975 3789999999999999999999 8999986 99999999 999999999
Q ss_pred ceeecCCCC
Q psy4533 196 ALTRSPSPT 204 (365)
Q Consensus 196 kV~k~~~~~ 204 (365)
+|+......
T Consensus 79 ~v~~~~~~~ 87 (93)
T 1txq_A 79 QIQVFEDGA 87 (93)
T ss_dssp GEEECC---
T ss_pred HeEEccCCC
Confidence 999876643
No 36
>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.80 E-value=9.8e-20 Score=155.87 Aligned_cols=71 Identities=35% Similarity=0.664 Sum_probs=64.6
Q ss_pred CCCCCCceeCcEEEECCcccEEEEEeeeCCCCCCceEEEeeccCCCC--------eeEEecCCCCcccccccceeEEEeC
Q psy4533 123 MDSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPDR--------ARIRHCPRASAISNAIRSTAIFSRL 194 (365)
Q Consensus 123 ~~~~~~~~vG~rV~v~g~~~G~vryiG~~~~~~G~W~GVeelDep~G--------~rYF~C~~~~~~~~~~p~~G~Fvr~ 194 (365)
++....|+||+||.|.+.++|+|||||+++|++|+|+|| |||+|.| +|||+|++ +||+|+++
T Consensus 26 ~~~~~~l~VG~RV~V~g~~~GtVRyvG~v~~~~G~WvGV-ELDeP~GKnDGsv~G~rYF~C~p---------~~GiFVr~ 95 (122)
T 2coz_A 26 ADELFDFHIGDRVLIGNVQPGILRFKGETSFAKGFWAGV-ELDKPEGNNNGTYDGIAYFECKE---------KHGIFAPP 95 (122)
T ss_dssp CCSCSSCCTTEEEEETTTEEEEEEEEEECSSSSSEEEEE-EESSTTSSBCSEETTEECCCCCS---------SCEEEECG
T ss_pred ccccccCcCCCEEEECCCcEEEEEEecccCCCCCeEEEE-EeCCCCCccCCEECCEEeeecCC---------CcEEEecH
Confidence 455678999999999988899999999999999999999 8999975 99999999 99999999
Q ss_pred CceeecCCC
Q psy4533 195 NALTRSPSP 203 (365)
Q Consensus 195 skV~k~~~~ 203 (365)
++|...+..
T Consensus 96 ~kv~~~pe~ 104 (122)
T 2coz_A 96 QKISHIPEN 104 (122)
T ss_dssp GGEECCCTT
T ss_pred HHCccCCcc
Confidence 999976553
No 37
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.80 E-value=9.8e-20 Score=151.09 Aligned_cols=67 Identities=27% Similarity=0.524 Sum_probs=62.0
Q ss_pred CCCceeCcEEEECCcccEEEEEeeeCCCCCCceEEEeeccCCCC--------eeEEecCCCCcccccccceeEEEeCCce
Q psy4533 126 TDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPDR--------ARIRHCPRASAISNAIRSTAIFSRLNAL 197 (365)
Q Consensus 126 ~~~~~vG~rV~v~g~~~G~vryiG~~~~~~G~W~GVeelDep~G--------~rYF~C~~~~~~~~~~p~~G~Fvr~skV 197 (365)
...|+|||||.|.+.++|+|||||+++|++|+|+|| |||+|.| +|||+|++ +||+|+++++|
T Consensus 21 ~~~l~vG~rV~V~g~~~GtVryvG~~~~~~G~wvGV-ElDep~GKnDGsv~G~rYF~C~p---------~~GiFvr~~~v 90 (100)
T 2cow_A 21 PEWLREGEFVTVGAHKTGVVRYVGPADFQEGTWVGV-ELDLPSGKNDGSIGGKQYFRCNP---------GYGLLVRPSRV 90 (100)
T ss_dssp CSSCCTTCEEECSSSCEEEEEEEECCSSSSSCEEEE-ECSSSCCSCSSEETTEECCCSCT---------TCCEEECGGGC
T ss_pred CccccCCCEEEECCCcEEEEEEeeeCCCCCCeEEEE-EeCCCCCcCCCEECCEEeeecCC---------CeEEEecHHHe
Confidence 356999999999987899999999999999999999 8999986 99999999 99999999999
Q ss_pred eecCC
Q psy4533 198 TRSPS 202 (365)
Q Consensus 198 ~k~~~ 202 (365)
.+...
T Consensus 91 ~~~~~ 95 (100)
T 2cow_A 91 RRATS 95 (100)
T ss_dssp EECCC
T ss_pred eECCC
Confidence 98754
No 38
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.79 E-value=2.9e-20 Score=153.27 Aligned_cols=68 Identities=29% Similarity=0.595 Sum_probs=60.4
Q ss_pred CCCCceeCcEEEECCcccEEEEEeeeCCCCCCceEEEeeccCCCC--------eeEEecCCCCcccccccceeEEEeCCc
Q psy4533 125 STDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPDR--------ARIRHCPRASAISNAIRSTAIFSRLNA 196 (365)
Q Consensus 125 ~~~~~~vG~rV~v~g~~~G~vryiG~~~~~~G~W~GVeelDep~G--------~rYF~C~~~~~~~~~~p~~G~Fvr~sk 196 (365)
....|+|||||.|.|.++|+|||||+++|++|.|+|| |||+|.| +|||+|++ +||+|+++++
T Consensus 7 ~~~~~~vG~rV~V~g~~~GtVryvG~~~~~~G~wvGV-ElDep~GKnDGsv~G~rYF~C~p---------~~G~Fv~~~~ 76 (96)
T 2z0w_A 7 GEGELRLGERVLVVGQRLGTIRFFGTTNFAPGYWYGI-ELEKPHGKNDGSVGGVQYFSCSP---------RYGIFAPPSR 76 (96)
T ss_dssp ----CCTTCCCCCCCCCCEEEEEEECCSSSSSCEEEE-EESSSCSSBSSEETTEESSCCCT---------TSEEEECGGG
T ss_pred CcccCCCCCEEEECCCcEEEEEEeccCCCCCCeEEEE-EeCCCCCCCCCEECCEEeeecCC---------CeEEEEcHHH
Confidence 3467999999999988899999999999999999999 8999976 99999999 9999999999
Q ss_pred eeecCC
Q psy4533 197 LTRSPS 202 (365)
Q Consensus 197 V~k~~~ 202 (365)
|.....
T Consensus 77 v~~~~~ 82 (96)
T 2z0w_A 77 VQRVTD 82 (96)
T ss_dssp CCCTTC
T ss_pred ceeccc
Confidence 987655
No 39
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.79 E-value=4.5e-19 Score=149.81 Aligned_cols=69 Identities=32% Similarity=0.562 Sum_probs=62.7
Q ss_pred CCCCceeCcEEEECCc-ccEEEEEeeeCCCCCCceEEEeeccCCCC--------eeEEecCCCCcccccccceeEEEeCC
Q psy4533 125 STDSFIIGDRVYVGGT-IPGKIAYIGETKFGPGDWAGKNRLDEPDR--------ARIRHCPRASAISNAIRSTAIFSRLN 195 (365)
Q Consensus 125 ~~~~~~vG~rV~v~g~-~~G~vryiG~~~~~~G~W~GVeelDep~G--------~rYF~C~~~~~~~~~~p~~G~Fvr~s 195 (365)
....|+|||||.|.+. ++|+|||||+++|++|+|+|| |||+|.| +|||+|++ +||+|++++
T Consensus 30 ~~~~l~VG~RV~V~~~g~~GtVRyvG~v~~~~G~wvGV-ElDep~GKnDGsv~G~rYF~C~p---------~~GiFVr~~ 99 (112)
T 2coy_A 30 SARPLRVGSRVEVIGKGHRGTVAYVGATLFATGKWVGV-ILDEAKGKNDGTVQGRKYFTCDE---------GHGIFVRQS 99 (112)
T ss_dssp SCCCCCTTCEEEETTTCCEEEEEEEECCSSSSSCEEEE-EESSSCSSBSSEETTEECSCCCT---------TTEEEECGG
T ss_pred ccccCCCCCEEEECCCCeEEEEEEeeecCCCCCcEEEE-EECCCCCCCCCEECCEEeeecCC---------CeEEEEchH
Confidence 3467999999999753 689999999999999999999 8999986 99999999 999999999
Q ss_pred ceeecCCC
Q psy4533 196 ALTRSPSP 203 (365)
Q Consensus 196 kV~k~~~~ 203 (365)
+|+.++..
T Consensus 100 ~v~~~~~~ 107 (112)
T 2coy_A 100 QIQVFEDS 107 (112)
T ss_dssp GEEECCCC
T ss_pred HeEEcCCC
Confidence 99988664
No 40
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=99.79 E-value=1.1e-19 Score=149.60 Aligned_cols=69 Identities=30% Similarity=0.541 Sum_probs=63.2
Q ss_pred CCceeCcEEEEC--C--cccEEEEEeeeCCCCCCceEEEeeccCCCC--------eeEEecCCCCcccccccceeEEEeC
Q psy4533 127 DSFIIGDRVYVG--G--TIPGKIAYIGETKFGPGDWAGKNRLDEPDR--------ARIRHCPRASAISNAIRSTAIFSRL 194 (365)
Q Consensus 127 ~~~~vG~rV~v~--g--~~~G~vryiG~~~~~~G~W~GVeelDep~G--------~rYF~C~~~~~~~~~~p~~G~Fvr~ 194 (365)
..|+||+||.|. | .++|+|||||++++++|+|+|| |||+|.| +|||+|++ +||+|+++
T Consensus 10 ~~~~vG~rv~V~~~g~~~~~GtVryvG~~~~~~G~wvGV-ElDep~GKnDGsv~G~rYF~C~p---------~~G~Fvr~ 79 (95)
T 1lpl_A 10 KNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGV-KYDEPVGKNDGSVAGVRYFDCDP---------KYGGFVRP 79 (95)
T ss_dssp HTCCTTCEEEECCTTSCCEEEEEEEEECCSSSSSCEEEE-EESSSCSSBSSEETTEECSCCCT---------TSEEEECG
T ss_pred hcCCCCCEEEEccCCCCceEEEEEEecccCCCCCEEEEE-EccCCCCccCCEECCEEEeEeCC---------CEEEEEcH
Confidence 468999999997 4 5789999999999999999999 8999975 99999998 99999999
Q ss_pred CceeecCCCCC
Q psy4533 195 NALTRSPSPTS 205 (365)
Q Consensus 195 skV~k~~~~~~ 205 (365)
++|+...+|..
T Consensus 80 ~~v~~gdfp~~ 90 (95)
T 1lpl_A 80 VDVKVGDFPEL 90 (95)
T ss_dssp GGEEESCCCCC
T ss_pred HHceECCCCCC
Confidence 99999988754
No 41
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.79 E-value=2.3e-19 Score=149.82 Aligned_cols=66 Identities=24% Similarity=0.307 Sum_probs=60.3
Q ss_pred CCCCceeCcEEEECC--cccEEEEEeeeCCCCCCceEEEeec-cCCCC--------eeEEecCCCCcccccccceeEEEe
Q psy4533 125 STDSFIIGDRVYVGG--TIPGKIAYIGETKFGPGDWAGKNRL-DEPDR--------ARIRHCPRASAISNAIRSTAIFSR 193 (365)
Q Consensus 125 ~~~~~~vG~rV~v~g--~~~G~vryiG~~~~~~G~W~GVeel-Dep~G--------~rYF~C~~~~~~~~~~p~~G~Fvr 193 (365)
....|+|||||+|.+ .++|+|||||+++|++|+|+|| || |+|.| +|||+|++ +||+|++
T Consensus 14 ~~~~l~VG~RV~V~~~~~~~GtVryvG~v~~~~G~wvGV-EldDep~GKnDGsv~G~rYF~C~p---------~~G~FVr 83 (104)
T 1ixd_A 14 NSHGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGL-ELEDECAGCTDGTFRGTRYFTCAL---------KKALFVK 83 (104)
T ss_dssp SSSCCCTTSEEEECSSSCCCEEEEEEECCSSSCCCEEEE-EESSCCTTCBSSEETTEECSCCCT---------TCBEEEE
T ss_pred CCcccccCCEEEECcCCCcEEEEEEecccCCCCceEEEE-EecCCCCCCCCCEECCEEeeecCC---------CcEEEEc
Confidence 347899999999985 5789999999999999999999 89 89875 99999999 9999999
Q ss_pred CCceeec
Q psy4533 194 LNALTRS 200 (365)
Q Consensus 194 ~skV~k~ 200 (365)
+++|...
T Consensus 84 ~~~v~~~ 90 (104)
T 1ixd_A 84 LKSCRPD 90 (104)
T ss_dssp GGGEEEC
T ss_pred HHHceec
Confidence 9999874
No 42
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.77 E-value=5.1e-19 Score=145.44 Aligned_cols=67 Identities=22% Similarity=0.338 Sum_probs=60.1
Q ss_pred CCCceeCcEEEEC--C---cccEEEEEeeeCC---CCCCceEEEeeccCC---CC--------eeEEecCCCCccccccc
Q psy4533 126 TDSFIIGDRVYVG--G---TIPGKIAYIGETK---FGPGDWAGKNRLDEP---DR--------ARIRHCPRASAISNAIR 186 (365)
Q Consensus 126 ~~~~~vG~rV~v~--g---~~~G~vryiG~~~---~~~G~W~GVeelDep---~G--------~rYF~C~~~~~~~~~~p 186 (365)
...|+|||||+|. + .++|+|||||+++ |++|+|+|| ||||| .| +|||+|++
T Consensus 5 ~~~~~VG~rV~V~~~~~~~~~~GtVryvG~v~~~~~~~G~wvGV-ElDep~~~~GKnDGsv~G~rYF~C~~--------- 74 (95)
T 1whl_A 5 SSGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGV-ELLEEGRGQGFTDGVYQGKQLFQCDE--------- 74 (95)
T ss_dssp CCCCCSSCEEEEECSSSSCEEEEEEEEECCCCSSSSCCCCCEEE-EECSSSCSCCSSTTEETTEECCCCCT---------
T ss_pred cccCcCCCEEEEecCCCccceeEEEEEeCccCcccCCCceEEEE-EeCCCcccCCCCCCEECCEEEeecCC---------
Confidence 4679999999993 4 4789999999998 899999999 89999 55 99999999
Q ss_pred ceeEEEeCCceeecCC
Q psy4533 187 STAIFSRLNALTRSPS 202 (365)
Q Consensus 187 ~~G~Fvr~skV~k~~~ 202 (365)
+||+|+++++|+....
T Consensus 75 ~~G~Fv~~~~v~~~~~ 90 (95)
T 1whl_A 75 DCGVFVALDKLELIES 90 (95)
T ss_dssp TTEEEECGGGEEECCS
T ss_pred CeEEEEcHHHeEEcCc
Confidence 9999999999998654
No 43
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.77 E-value=3.7e-19 Score=150.59 Aligned_cols=69 Identities=32% Similarity=0.543 Sum_probs=63.0
Q ss_pred CCCceeCcEEEEC--C--cccEEEEEeeeCCCCCCceEEEeeccCCCC--------eeEEecCCCCcccccccceeEEEe
Q psy4533 126 TDSFIIGDRVYVG--G--TIPGKIAYIGETKFGPGDWAGKNRLDEPDR--------ARIRHCPRASAISNAIRSTAIFSR 193 (365)
Q Consensus 126 ~~~~~vG~rV~v~--g--~~~G~vryiG~~~~~~G~W~GVeelDep~G--------~rYF~C~~~~~~~~~~p~~G~Fvr 193 (365)
...|.|||||.|. | .++|+|||||++++.+|+|+|| |||+|.| +|||+|++ +||+|++
T Consensus 30 ~~~~~VG~RV~V~~~g~~~~~GtVryvG~v~~~~G~wvGV-ElDep~GKnDGsv~G~rYF~C~p---------~~GiFvr 99 (113)
T 1whg_A 30 ASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGV-RYDEPLGKNDGSVNGKRYFECQA---------KYGAFVK 99 (113)
T ss_dssp HTTSCSSCEEEECCSSSSCEEEEEEEEEECSSSSSEEEEE-EESSSCCSBBSEETTEECSCCCT---------TTEEEEC
T ss_pred hhcCCCCCEEEEecCCCcceEEEEEEecccCCCCCEEEEE-EecCCCCccCCEECCEEEeeeCC---------CeEEEEC
Confidence 3579999999995 4 4799999999999999999999 8999975 99999999 9999999
Q ss_pred CCceeecCCCC
Q psy4533 194 LNALTRSPSPT 204 (365)
Q Consensus 194 ~skV~k~~~~~ 204 (365)
+++|+.+.+|.
T Consensus 100 ~~~v~~gdfp~ 110 (113)
T 1whg_A 100 PSAVTVGDSGP 110 (113)
T ss_dssp GGGEEEEECCS
T ss_pred HHHeEECCCCC
Confidence 99999988764
No 44
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.63 E-value=3.5e-16 Score=127.79 Aligned_cols=66 Identities=18% Similarity=0.259 Sum_probs=57.7
Q ss_pred CCCCCCceeCcEEEEC-C--cccEEEEEeeeCCC--CCCceEEEeeccCCCC--------eeEE-ecCCCCcccccccce
Q psy4533 123 MDSTDSFIIGDRVYVG-G--TIPGKIAYIGETKF--GPGDWAGKNRLDEPDR--------ARIR-HCPRASAISNAIRST 188 (365)
Q Consensus 123 ~~~~~~~~vG~rV~v~-g--~~~G~vryiG~~~~--~~G~W~GVeelDep~G--------~rYF-~C~~~~~~~~~~p~~ 188 (365)
-++...|+||+||+|. + .++|+|||||++++ ..|+|+|| |||||.| +||| .|++ +|
T Consensus 4 ~~~~~~i~VG~Rc~V~~~~~~rrGtVrfvG~~~~~~~~G~wVGV-elDEP~GknDGsv~G~ryF~~c~~---------~~ 73 (92)
T 1whm_A 4 GSSGPPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGV-DMDNPIGNWDGRFDGVQLCSFACV---------ES 73 (92)
T ss_dssp SCCSCSSCTTCEEEEEETTEEEEEEEEEEECCTTCTTTCCEEEE-EESSSCCCCCSEETTEESCSSCCT---------TT
T ss_pred cccccCccccCeEEEcCCCceeeEEEEEEecCCCcCCCCeEEEE-EcCCCCCCCCCeECCEEeccccCC---------Cc
Confidence 3556789999999996 2 38999999999976 46999999 8999985 9999 9999 99
Q ss_pred eEEEeCCcee
Q psy4533 189 AIFSRLNALT 198 (365)
Q Consensus 189 G~Fvr~skV~ 198 (365)
|+|+.+..+-
T Consensus 74 g~fV~~~d~~ 83 (92)
T 1whm_A 74 TILLHINDII 83 (92)
T ss_dssp EEEEEGGGEE
T ss_pred ceEcccccCc
Confidence 9999999883
No 45
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=28.54 E-value=33 Score=31.91 Aligned_cols=25 Identities=36% Similarity=0.650 Sum_probs=21.4
Q ss_pred CCCceeCcEEEECCcccEEEEEeeeC
Q psy4533 126 TDSFIIGDRVYVGGTIPGKIAYIGET 151 (365)
Q Consensus 126 ~~~~~vG~rV~v~g~~~G~vryiG~~ 151 (365)
...|++||+|.++|. .|+|.-||-.
T Consensus 126 ~~pf~vGD~I~i~~~-~G~V~~I~l~ 150 (285)
T 3udc_A 126 EDQFSVGDYVTINGI-SGTVEEIGLR 150 (285)
T ss_dssp TTSCCTTCEEEETTE-EEEEEEECSS
T ss_pred hCCccCCCEEEECCE-EEEEEEeeee
Confidence 467999999999986 7999998764
No 46
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=27.82 E-value=71 Score=26.76 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=38.4
Q ss_pred ccCCCccCCEEEEEcCCC--CceEEEEEeccccCCCCceEEEEecCCCCCCCceECCEEeeecCCCCeeeEecC
Q psy4533 262 IRNEIRLGDRVIIRSSQG--SKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVS 333 (365)
Q Consensus 262 ~~~~l~VGdRV~V~~~~g--~~~GtVRyiG~~~~~~G~wvGVELDep~GknDGsv~G~rYF~C~p~~GiFV~~~ 333 (365)
...+|++||+|+....+| ...-++.|+..-+.....++=|+.++ | +-+..-|+|=+|+.-.
T Consensus 17 ~i~eL~~GD~Vla~d~~G~~~~s~V~~~~~r~~~~~~~f~~I~t~~----------g-~~L~lTp~H~i~v~~~ 79 (145)
T 1at0_A 17 PLGELSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHTDG----------G-AVLTVTPAHLVSVWQP 79 (145)
T ss_dssp EGGGCCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEEEEETT----------S-CEEEECTTCEEEEEET
T ss_pred EHHHcCCCCEEEEECCCCCEEEEEEEEEEeeCCCcceeEEEEEECC----------C-CEEEEeCCCEEEEecC
Confidence 456789999999875333 23456667654443345677777652 3 4466777777777543
No 47
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=25.27 E-value=35 Score=31.76 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=22.1
Q ss_pred CCCCceeCcEEEECCcccEEEEEeeeC
Q psy4533 125 STDSFIIGDRVYVGGTIPGKIAYIGET 151 (365)
Q Consensus 125 ~~~~~~vG~rV~v~g~~~G~vryiG~~ 151 (365)
-...|++||+|.++|. .|+|.-||-.
T Consensus 126 ~~~pf~vGD~I~i~g~-~G~V~~I~l~ 151 (286)
T 2vv5_A 126 MFRPFRAGEYVDLGGV-AGTVLSVQIF 151 (286)
T ss_dssp TTCSSCTTCEEESSSC-EEEEEEECSS
T ss_pred hcCCccCCCEEEECCE-EEEEEEEEeE
Confidence 3478999999999986 7999999865
No 48
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=24.48 E-value=3.1e+02 Score=25.30 Aligned_cols=77 Identities=19% Similarity=0.379 Sum_probs=52.1
Q ss_pred cccCCCccCCEEEEEcC--CCCceEEEEEeccccCC-CC-ceEEEEecCCCCC-CCceECCEEeeecCCCCeeeEecCCc
Q psy4533 261 IIRNEIRLGDRVIIRSS--QGSKSGVLKYKGDTYFA-DG-EWCGVELDDPLGK-NDGSVDGVRYFYCEPRFGVFAPVSKV 335 (365)
Q Consensus 261 ~~~~~l~VGdRV~V~~~--~g~~~GtVRyiG~~~~~-~G-~wvGVELDep~Gk-nDGsv~G~rYF~C~p~~GiFV~~~kV 335 (365)
.....|++|+.|.|... +....|+|.+|++.... .+ .-+=|+|++|.+. ..|.+--. .|......++.||.+-|
T Consensus 217 ~~~~~i~~G~~v~v~~~~~~~~~~g~v~~i~~~~d~~~~~~~v~~~~~~~~~~l~~G~~~~v-~i~~~~~~~l~vP~~Av 295 (359)
T 3lnn_A 217 KDLGHVYVGQSATVKFDAYDDPQPGKVRYVGQILDADTRTTKVRMVFDNPDGRLRPGMFAQA-TFLSQPHEGIVVPMSAI 295 (359)
T ss_dssp GGSTTCCTTCEEEEBCSSCSSCEEEEEEECCCCCCTTSCCEEEEEEEECSSCCCCTTCEEEE-EEECCCEEEEEEEGGGC
T ss_pred HHHhhCCCCCeEEEEEcCCCCcEEEEEEEEecccCCCCcEEEEEEEecCCCCCcCCCCEEEE-EEecCCCCceEeCHHHh
Confidence 34667999999999854 45679999999987543 22 4555788887653 45555333 33445667788887777
Q ss_pred ccC
Q psy4533 336 SKS 338 (365)
Q Consensus 336 ~~~ 338 (365)
...
T Consensus 296 ~~~ 298 (359)
T 3lnn_A 296 VQS 298 (359)
T ss_dssp EET
T ss_pred ecc
Confidence 654
Done!