RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4533
(365 letters)
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein,
CAP Gly protein complex, structural PR; HET: BME; 1.75A
{Homo sapiens} PDB: 2qk0_A
Length = 72
Score = 111 bits (279), Expect = 6e-31
Identities = 36/74 (48%), Positives = 54/74 (72%), Gaps = 3/74 (4%)
Query: 264 NEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCE 323
++ R+G+RV + G+K G +++ G+T FA G+W G+ LD+P+GKNDGSV GVRYF CE
Sbjct: 1 DDFRVGERVWV---NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCE 57
Query: 324 PRFGVFAPVSKVSK 337
P G+F SK+++
Sbjct: 58 PLKGIFTRPSKLTR 71
Score = 69.9 bits (172), Expect = 1e-15
Identities = 26/37 (70%), Positives = 31/37 (83%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTR 37
IVLDEP GKNDG+V G RYFQC+P GIF+R ++LTR
Sbjct: 35 IVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTR 71
Score = 52.6 bits (127), Expect = 2e-09
Identities = 23/42 (54%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 127 DSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPD 168
D F +G+RV+V G PG I ++GET+F PG WAG LDEP
Sbjct: 1 DDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGI-VLDEPI 41
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural
protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Length = 86
Score = 107 bits (270), Expect = 2e-29
Identities = 36/76 (47%), Positives = 54/76 (71%), Gaps = 3/76 (3%)
Query: 264 NEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCE 323
++ R+G+RV + G+K G +++ G+T FA G+W G+ LD+P+GKNDGSV GVRYF CE
Sbjct: 1 DDFRVGERVWV---NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCE 57
Query: 324 PRFGVFAPVSKVSKSP 339
P G+F SK+++
Sbjct: 58 PLKGIFTRPSKLTRKV 73
Score = 67.8 bits (166), Expect = 1e-14
Identities = 27/53 (50%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSPLLHLSDRPTSRNSS 53
IVLDEP GKNDG+V G RYFQC+P GIF+R ++LTR D ++
Sbjct: 35 IVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRKV--QAEDEANGLQTT 85
Score = 51.6 bits (124), Expect = 5e-09
Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 127 DSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
D F +G+RV+V G PG I ++GET+F PG WAG LDEP
Sbjct: 1 DDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGI-VLDEP 40
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural
genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI;
1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB:
1tov_A
Length = 95
Score = 106 bits (267), Expect = 6e-29
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 265 EIRLGDRVIIR-SSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCE 323
I +G+R + +Q ++ G + Y G T F +G W GV+ D+P+GKNDGSV GVRYF C+
Sbjct: 11 NIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCD 70
Query: 324 PRFGVFAPVSKVS 336
P++G F V
Sbjct: 71 PKYGGFVRPVDVK 83
Score = 65.5 bits (160), Expect = 1e-13
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLT 36
+ DEP GKNDG+V G RYF CDPK+G F R +
Sbjct: 48 VKYDEPVGKNDGSVAGVRYFDCDPKYGGFVRPVDVK 83
Score = 45.9 bits (109), Expect = 9e-07
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 121 YSMDSTDSFIIGDRVYV----GGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
+ ++ + ++G+R V G++AY+G TKF G W G + DEP
Sbjct: 4 LNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGV-KYDEP 53
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural
protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB:
2e4h_A
Length = 90
Score = 106 bits (266), Expect = 8e-29
Identities = 44/73 (60%), Positives = 62/73 (84%), Gaps = 3/73 (4%)
Query: 265 EIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEP 324
E+++GDRV++ G+K+GV+++ G+T FA GEWCGVELD+PLGKNDG+V G RYF C+P
Sbjct: 1 ELKIGDRVLVG---GTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQP 57
Query: 325 RFGVFAPVSKVSK 337
++G+FAPV KV+K
Sbjct: 58 KYGLFAPVHKVTK 70
Score = 66.2 bits (162), Expect = 4e-14
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSPLLHLSDRPTSRNSS 53
+ LDEP GKNDG V G RYFQC PK+G+F+ ++++T+ + N+
Sbjct: 34 VELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPSTTPAKAKANAV 86
Score = 48.5 bits (116), Expect = 8e-08
Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 129 FIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
IGDRV VGGT G + ++GET F G+W G LDEP
Sbjct: 2 LKIGDRVLVGGTKAGVVRFLGETDFAKGEWCGV-ELDEP 39
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated
protein, CYLN2, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.34.10.1
Length = 84
Score = 105 bits (264), Expect = 1e-28
Identities = 45/73 (61%), Positives = 59/73 (80%), Gaps = 3/73 (4%)
Query: 265 EIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEP 324
+RLGDRV++ G+K+GV++Y G+T FA GEWCGVELD+PLGKNDG+V G RYF C P
Sbjct: 7 GLRLGDRVLVG---GTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPP 63
Query: 325 RFGVFAPVSKVSK 337
+FG+FAP+ KV +
Sbjct: 64 KFGLFAPIHKVIR 76
Score = 67.3 bits (165), Expect = 2e-14
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 5/49 (10%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSPLLHLSDRPTS 49
+ LDEP GKNDG V G RYFQC PK G+F+ ++++ R + P+S
Sbjct: 40 VELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKVIR-----IGSGPSS 83
Score = 50.4 bits (121), Expect = 1e-08
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 124 DSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
+ +GDRV VGGT G + Y+GET F G+W G LDEP
Sbjct: 3 SGSSGLRLGDRVLVGGTKTGVVRYVGETDFAKGEWCGV-ELDEP 45
>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.34.10.1
Length = 91
Score = 105 bits (264), Expect = 2e-28
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 265 EIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEP 324
++ G +V++ S ++ ++Y G T FA G W G+EL GKNDG+V RYF C+P
Sbjct: 12 KLHEGSQVLLTS--SNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKP 69
Query: 325 RFGVFAPVSKVSKSPV 340
+GV S+V+ +
Sbjct: 70 NYGVLVRPSRVTYRGI 85
Score = 65.9 bits (161), Expect = 6e-14
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSP 39
+ L GKNDG VG RYF C P +G+ R +R+T
Sbjct: 46 LELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRVTYRG 84
Score = 46.2 bits (110), Expect = 5e-07
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 122 SMDSTDSFIIGDRVYV-GGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
S + T G +V + + Y+G T F G W G L
Sbjct: 6 SGEGTVKLHEGSQVLLTSSNEMATVRYVGPTDFASGIWLGL-ELRSA 51
>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated
protein, CYLN2, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.34.10.1 PDB: 2cp7_A
Length = 95
Score = 105 bits (264), Expect = 2e-28
Identities = 38/79 (48%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
Query: 265 EIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEP 324
+ +G+RV + G K GV++Y G+T FA G+W GV LDDP+GKNDG+V GVRYF C
Sbjct: 18 DFVVGERVWV---NGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPA 74
Query: 325 RFGVFAPVSKVSKSPVQAS 343
G+F SK+++ P S
Sbjct: 75 LQGIFTRPSKLTRQPSGPS 93
Score = 68.2 bits (167), Expect = 1e-14
Identities = 24/39 (61%), Positives = 30/39 (76%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSP 39
+VLD+P GKNDG VGG RYF+C GIF+R ++LTR P
Sbjct: 51 VVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKLTRQP 89
Score = 53.2 bits (128), Expect = 2e-09
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 117 SSPLYSMDSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
+ D F++G+RV+V G PG + Y+GET+F PG WAG LD+P
Sbjct: 7 GAAEVGDDFLGDFVVGERVWVNGVKPGVVQYLGETQFAPGQWAGV-VLDDP 56
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton
associated protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.34.10.1
Length = 95
Score = 105 bits (263), Expect = 2e-28
Identities = 44/79 (55%), Positives = 57/79 (72%), Gaps = 3/79 (3%)
Query: 265 EIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEP 324
+RLGDRV++ G K+G L++ G T FA G+W GVELD+P GKNDGSV GVRYF C P
Sbjct: 16 GLRLGDRVLLD---GQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPP 72
Query: 325 RFGVFAPVSKVSKSPVQAS 343
+ G+FA VSK+SK+ +
Sbjct: 73 KQGLFASVSKISKAVDASG 91
Score = 64.7 bits (158), Expect = 2e-13
Identities = 20/39 (51%), Positives = 31/39 (79%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSP 39
+ LDEP GKNDG+VGG RYF C PK G+F+ +++++++
Sbjct: 49 VELDEPEGKNDGSVGGVRYFICPPKQGLFASVSKISKAV 87
Score = 52.8 bits (127), Expect = 3e-09
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 117 SSPLYSMDSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
SS M S +GDRV + G G + + G T+F G W G LDEP
Sbjct: 5 SSGGNLMLSALGLRLGDRVLLDGQKTGTLRFCGTTEFASGQWVGV-ELDEP 54
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.34.10.1
Length = 102
Score = 105 bits (263), Expect = 3e-28
Identities = 43/101 (42%), Positives = 61/101 (60%), Gaps = 6/101 (5%)
Query: 239 GNPSHGRLPTLSEDEIRLGDRVIIRNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEW 298
G+ LP ++ ++LGDRV+I G K G L++ G T FA G+W
Sbjct: 1 GSSGSSGLPNSDHTT---SRAMLTSLGLKLGDRVVIA---GQKVGTLRFCGTTEFASGQW 54
Query: 299 CGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSP 339
G+ELD+P GKN+GSV V+YF C P++G+FAP+SK+SK
Sbjct: 55 AGIELDEPEGKNNGSVGRVQYFKCAPKYGIFAPLSKISKLK 95
Score = 64.4 bits (157), Expect = 3e-13
Identities = 20/39 (51%), Positives = 31/39 (79%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSP 39
I LDEP GKN+G+VG +YF+C PK+GIF+ L+++++
Sbjct: 57 IELDEPEGKNNGSVGRVQYFKCAPKYGIFAPLSKISKLK 95
Score = 52.8 bits (127), Expect = 3e-09
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 106 PSPPCKPQATHSSPLYSMDSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLD 165
P + H++ +M ++ +GDRV + G G + + G T+F G WAG LD
Sbjct: 3 SGSSGLPNSDHTTS-RAMLTSLGLKLGDRVVIAGQKVGTLRFCGTTEFASGQWAGI-ELD 60
Query: 166 EP 167
EP
Sbjct: 61 EP 62
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing,
ANK repeat, protein binding, structural genomics,
NPPSFA; 2.50A {Homo sapiens}
Length = 96
Score = 104 bits (262), Expect = 4e-28
Identities = 38/76 (50%), Positives = 53/76 (69%), Gaps = 3/76 (3%)
Query: 264 NEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCE 323
E+RLG+RV++ G + G +++ G T FA G W G+EL+ P GKNDGSV GV+YF C
Sbjct: 9 GELRLGERVLVV---GQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCS 65
Query: 324 PRFGVFAPVSKVSKSP 339
PR+G+FAP S+V +
Sbjct: 66 PRYGIFAPPSRVQRVT 81
Score = 67.4 bits (165), Expect = 2e-14
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSPLLHLSDRPTSRNSS 53
I L++P GKNDG+VGG +YF C P++GIF+ +R+ R + S SS
Sbjct: 43 IELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRVQRVTDSLDTLSEISGPSS 95
Score = 48.6 bits (116), Expect = 9e-08
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 122 SMDSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
+G+RV V G G I + G T F PG W G L++P
Sbjct: 4 GSSGEGELRLGERVLVVGQRLGTIRFFGTTNFAPGYWYGI-ELEKP 48
>1txq_A Dynactin 1; protein complex, structural protein/protein binding
complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB:
2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Length = 93
Score = 104 bits (261), Expect = 5e-28
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 265 EIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEP 324
+R+G RV + G + Y G T FA G+W GV LD+ GKNDG+V G +YF C+
Sbjct: 12 PLRVGSRVEVIG--KGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDE 69
Query: 325 RFGVFAPVSKVSKSPVQASGHASK 348
G+F S++ A + +
Sbjct: 70 GHGIFVRQSQIQVFEDGADTTSPE 93
Score = 64.7 bits (158), Expect = 2e-13
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSP 39
++LDE GKNDGTV G +YF CD HGIF R +++
Sbjct: 46 VILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVFE 84
Score = 45.5 bits (108), Expect = 1e-06
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 118 SPLYSMDSTDSFIIGDRVYV-GGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
S + + S +G RV V G G +AY+G T F G W G LDE
Sbjct: 2 SRMSAEASARPLRVGSRVEVIGKGHRGTVAYVGATLFATGKWVGV-ILDEA 51
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton
associated protein, KIAA0639, kinesin-like protein
gakin, structural genomics; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 100
Score = 102 bits (257), Expect = 2e-27
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 264 NEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCE 323
+R G+ V + K+GV++Y G F +G W GVELD P GKNDGS+ G +YF C
Sbjct: 22 EWLREGEFVTVG---AHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCN 78
Query: 324 PRFGVFAPVSKVSKSPVQAS 343
P +G+ S+V ++ S
Sbjct: 79 PGYGLLVRPSRVRRATSGPS 98
Score = 65.2 bits (159), Expect = 1e-13
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 5/49 (10%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSPLLHLSDRPTS 49
+ LD P+GKNDG++GG +YF+C+P +G+ R +R+ R + P+S
Sbjct: 56 VELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVRR-----ATSGPSS 99
Score = 50.5 bits (121), Expect = 2e-08
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 107 SPPCKPQATHSSPLYSMDSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDE 166
S QA S + + + G+ V VG G + Y+G F G W G LD
Sbjct: 2 SSGSSGQALASDSEEADEVPEWLREGEFVTVGAHKTGVVRYVGPADFQEGTWVGV-ELDL 60
Query: 167 P 167
P
Sbjct: 61 P 61
>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, structural protein; NMR {Mus musculus}
SCOP: b.34.10.1
Length = 102
Score = 102 bits (256), Expect = 4e-27
Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 3/73 (4%)
Query: 265 EIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEP 324
+ +GD+V++ G K G++++ G T FA G W G+ELD P GK+DGSV GVRYF C P
Sbjct: 25 KAEVGDQVLVA---GQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCAP 81
Query: 325 RFGVFAPVSKVSK 337
R GVFAP S++ +
Sbjct: 82 RHGVFAPASRIQR 94
Score = 65.2 bits (159), Expect = 2e-13
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 5/49 (10%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSPLLHLSDRPTS 49
I LD+PTGK+DG+V G RYF C P+HG+F+ +R+ R + P+S
Sbjct: 58 IELDQPTGKHDGSVFGVRYFTCAPRHGVFAPASRIQR-----IGSGPSS 101
Score = 48.2 bits (115), Expect = 1e-07
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 114 ATHSSPLYSMDSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
++ S +GD+V V G G + + G+T F PG W G LD+P
Sbjct: 11 SSPSLGSLQQREGAKAEVGDQVLVAGQKQGIVRFYGKTDFAPGYWYGI-ELDQP 63
>2coz_A CAP350, centrosome-associated protein 350; microtubule binding,
cytoskeleton associated protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Length = 122
Score = 101 bits (254), Expect = 9e-27
Identities = 35/75 (46%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Query: 265 EIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEP 324
+ +GDRV+I + G+L++KG+T FA G W GVELD P G N+G+ DG+ YF C+
Sbjct: 31 DFHIGDRVLIG---NVQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKE 87
Query: 325 RFGVFAPVSKVSKSP 339
+ G+FAP K+S P
Sbjct: 88 KHGIFAPPQKISHIP 102
Score = 63.8 bits (155), Expect = 8e-13
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSP 39
+ LD+P G N+GT G YF+C KHGIF+ +++ P
Sbjct: 64 VELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKISHIP 102
Score = 48.8 bits (116), Expect = 1e-07
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 99 SPLSAKYPSPPCKPQATHSSPLYSMDSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDW 158
S S+ ++ + + + D F IGDRV +G PG + + GET F G W
Sbjct: 2 SSGSSGVEHEQQVTESPSLASVPTADELFDFHIGDRVLIGNVQPGILRFKGETSFAKGFW 61
Query: 159 AGKNRLDEP 167
AG LD+P
Sbjct: 62 AGV-ELDKP 69
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton
associated protein, ckapi, structural genomics; NMR {Mus
musculus} SCOP: b.34.10.1
Length = 113
Score = 100 bits (251), Expect = 2e-26
Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 244 GRLPTLSEDEIRLGDRVIIRNEIRLGDRVIIRSSQGS-KSGVLKYKGDTYFADGEWCGVE 302
R +E RL + + I +G R +R+ S + G + Y G T F G W GV
Sbjct: 11 LRAQQEAEAAQRLSEEKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVR 70
Query: 303 LDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSP 339
D+PLGKNDGSV+G RYF C+ ++G F S V+
Sbjct: 71 YDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVGD 107
Score = 63.4 bits (154), Expect = 8e-13
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSP 39
+ DEP GKNDG+V G RYF+C K+G F + + +T
Sbjct: 69 VRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVGD 107
Score = 38.0 bits (88), Expect = 6e-04
Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
Query: 102 SAKYPSPPCKPQATHSSPLYSMDST---DSFIIGDRVYVGGTI----PGKIAYIGETKFG 154
S + + Q + + + +G R V G + Y+G T F
Sbjct: 3 SGSSGNEELRAQQEAEAAQRLSEEKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFK 62
Query: 155 PGDWAGKNRLDEP 167
PG W G R DEP
Sbjct: 63 PGYWVGV-RYDEP 74
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein,
P150- glued, DAP-150, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.34.10.1
Length = 112
Score = 100 bits (251), Expect = 2e-26
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 264 NEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCE 323
+R+G RV + G + Y G T FA G+W GV LD+ GKNDG+V G +YF C+
Sbjct: 32 RPLRVGSRVEVIG--KGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCD 89
Query: 324 PRFGVFAPVSKVSKSP 339
G+F S++
Sbjct: 90 EGHGIFVRQSQIQVFE 105
Score = 62.9 bits (153), Expect = 1e-12
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSP 39
++LDE GKNDGTV G +YF CD HGIF R +++
Sbjct: 67 VILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVFE 105
Score = 47.1 bits (112), Expect = 4e-07
Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 9/79 (11%)
Query: 90 STASPVSECSPLSAKYPSPPCKPQATHSSPLYSMDSTDSFIIGDRVYV-GGTIPGKIAYI 148
S+ S S +P S + + S +G RV V G G +AY+
Sbjct: 2 SSGSSGMAQSKRHVYSRTPS-------GSRMSAEASARPLRVGSRVEVIGKGHRGTVAYV 54
Query: 149 GETKFGPGDWAGKNRLDEP 167
G T F G W G LDE
Sbjct: 55 GATLFATGKWVGV-ILDEA 72
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 141
Score = 100 bits (250), Expect = 6e-26
Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 196 ALTRSPSPTSLGPPPHPRQFFSRPKAATHLTIQEVPHLMVSTQGNPSHGRLPTLSEDEIR 255
+ P+ L P +P + T V + T + P+ E
Sbjct: 6 SGMSMLKPSGLKAPTKI----LKPGSTALKTPTAVVAPVEKTISSEKASSTPSSETQEEF 61
Query: 256 LGDRVIIRNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVD 315
+ D R+G+RV + G+K G +++ G+T FA G+W G+ LD+P+GKNDGSV
Sbjct: 62 VDD-------FRVGERVWV---NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVA 111
Query: 316 GVRYFYCEPRFGVFAPVSKVSKSPVQAS 343
GVRYF CEP G+F SK+++ S
Sbjct: 112 GVRYFQCEPLKGIFTRPSKLTRKVSGPS 139
Score = 63.5 bits (154), Expect = 2e-12
Identities = 26/39 (66%), Positives = 31/39 (79%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSP 39
IVLDEP GKNDG+V G RYFQC+P GIF+R ++LTR
Sbjct: 97 IVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRKV 135
Score = 53.0 bits (127), Expect = 6e-09
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 79 GLFSRTSPEDISTASPVSECSPLSAKYPSPPCKPQATHSSPLYSMDSTDSFIIGDRVYVG 138
GL + T + + + + ++ + + ++ S + D F +G+RV+V
Sbjct: 15 GLKAPTKILKPGSTALKTPTAVVAPVEKTISSEKASSTPSSETQEEFVDDFRVGERVWVN 74
Query: 139 GTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
G PG I ++GET+F PG WAG LDEP
Sbjct: 75 GNKPGFIQFLGETQFAPGQWAGI-VLDEP 102
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Length = 104
Score = 94.4 bits (235), Expect = 3e-24
Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 14/109 (12%)
Query: 240 NPSHGRLPTLSEDEIRLGDRVIIRNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWC 299
S +P + + +G + GV+++ G +
Sbjct: 4 GSSGLAMPPGNSHGLEVGSLAEV-------------KENPPFYGVIRWIGQPPGLNEVLA 50
Query: 300 GVELDDPL-GKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSPVQASGHAS 347
G+EL+D G DG+ G RYF C + +F + AS S
Sbjct: 51 GLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSRFASLQPS 99
Score = 58.2 bits (141), Expect = 5e-11
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 1 IVLDEPT-GKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSP 39
+ L++ G DGT G RYF C K +F +L
Sbjct: 52 LELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDS 91
Score = 42.4 bits (100), Expect = 1e-05
Identities = 18/109 (16%), Positives = 28/109 (25%), Gaps = 25/109 (22%)
Query: 112 PQATHSSPLYSMDSTDSFIIGDRVYV--GGTIPGKIAYIGETKFGPGDWAGKNRLDEPDR 169
P ++ +G V G I +IG+ AG L++
Sbjct: 5 SSGLAMPP----GNSHGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGL-ELEDECA 59
Query: 170 AR-------IR--HCPRASAISNAIRSTAIFSRLNALTRSPSPTSLGPP 209
R C A+F +L + SL P
Sbjct: 60 GCTDGTFRGTRYFTCALKK---------ALFVKLKSCRPDSRFASLQPS 99
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.10.1
Length = 95
Score = 92.2 bits (229), Expect = 2e-23
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 264 NEIRLGDRVIIRSSQGSKS--GVLKYKG---DTYFADGEWCGVELDD---PLGKNDGSVD 315
+ I +G V ++ G + GV++++G G + GVEL + G DG
Sbjct: 6 SGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQ 65
Query: 316 GVRYFYCEPRFGVFAPVSKVSKSPVQAS 343
G + F C+ GVF + K+ S
Sbjct: 66 GKQLFQCDEDCGVFVALDKLELIESGPS 93
Score = 58.3 bits (141), Expect = 4e-11
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 4 DEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSP 39
G DG G + FQCD G+F L++L
Sbjct: 54 GRGQGFTDGVYQGKQLFQCDEDCGVFVALDKLELIE 89
Score = 35.5 bits (82), Expect = 0.004
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 9/52 (17%)
Query: 131 IGDRVYV-----GGTIPGKIAYIG---ETKFGPGDWAGKNRLDEPDRARIRH 174
+G V V PG + + G + G + G L E R +
Sbjct: 10 VGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGV-ELLEEGRGQGFT 60
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 172
Score = 91.7 bits (227), Expect = 3e-22
Identities = 44/73 (60%), Positives = 62/73 (84%), Gaps = 3/73 (4%)
Query: 265 EIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEP 324
E+++GDRV++ G+K+GV+++ G+T FA GEWCGVELD+PLGKNDG+V G RYF C+P
Sbjct: 38 ELKIGDRVLVG---GTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQP 94
Query: 325 RFGVFAPVSKVSK 337
++G+FAPV KV+K
Sbjct: 95 KYGLFAPVHKVTK 107
Score = 60.9 bits (147), Expect = 2e-11
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTR------SPLLHLSDRPTSRNSSV 54
+ LDEP GKNDG V G RYFQC PK+G+F+ ++++T+ +P ++ ++
Sbjct: 71 VELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPSTTPAKAKANAVRRVMATT 130
Query: 55 DEGRYSPFKKSSFDGLYSRKSSDGGLFSRTSPEDISTASP 94
SS + S SS SRT ++
Sbjct: 131 SASLKRSPSASSLSSMSSVASSVSSRPSRTGLLTETSGPS 170
Score = 48.2 bits (114), Expect = 5e-07
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 99 SPLSAKYPSPPCKPQATHSSPLYSMDSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDW 158
+P + + + S IGDRV VGGT G + ++GET F G+W
Sbjct: 9 TPPISNLTKTASESISNLSEAGSIKKGERELKIGDRVLVGGTKAGVVRFLGETDFAKGEW 68
Query: 159 AGKNRLDEP 167
G LDEP
Sbjct: 69 CGV-ELDEP 76
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.10.1
Length = 92
Score = 67.9 bits (165), Expect = 1e-14
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 266 IRLGDRVIIRSSQGSKSGVLKYKG--DTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCE 323
+ + RV ++ + +SG + + + G + GV++D+P+G DG DGV+
Sbjct: 10 LEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFA 69
Query: 324 -PRFGVFAPVSKVSKS 338
+ ++ +
Sbjct: 70 CVESTILLHINDIIPE 85
Score = 33.2 bits (75), Expect = 0.020
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQC-DPKHGIFSRLNRLTRS 38
+ +D P G DG G + + I +N +
Sbjct: 47 VDMDNPIGNWDGRFDGVQLCSFACVESTILLHINDIIPE 85
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 31.9 bits (72), Expect = 0.28
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 264 NEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFY 321
N + G+ V+IR + L K ++ D+ +GK +G + F
Sbjct: 2 NSFKEGEYVLIRFGEKKFLRKLLPKQSLSVKKSV---LKFDEVIGKPEGVK--INGFE 54
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 30.4 bits (68), Expect = 0.83
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 266 IRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSV----DGVRYFY 321
IR GD+V++ +G + + K D + G ++L++ +G+N G G +
Sbjct: 2 IREGDKVVLVDPRGKRYLITVSKRDFHTDLGI---LKLEEIIGRNFGEAIKSHKGHEFKI 58
Query: 322 CEPRF 326
PR
Sbjct: 59 LRPRI 63
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC
AMP; 2.30A {Escherichia coli}
Length = 671
Score = 29.0 bits (66), Expect = 2.8
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 7/25 (28%)
Query: 251 EDEIRLGDRVIIRNEIRLGDRVIIR 275
DEI R +R+GD+V+IR
Sbjct: 361 ADEIE-------RLGLRIGDKVVIR 378
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 2.9
Identities = 55/279 (19%), Positives = 81/279 (29%), Gaps = 95/279 (34%)
Query: 80 LFS------RTSPEDISTASPVSECSPLSAKYPSPPCKPQATHSSPLYSM----DSTDSF 129
LF P S + + + PSP M + T
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP--------------MLSISNLTQEQ 348
Query: 130 IIGDRVYVGGTIP-GKIAYI----GETKF---G-PGDWAGKNRL-------DEPDRARIR 173
+ +P GK I G G P G N D++RI
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 174 HCPRASAISNAIRSTAIFSRLNALTRSPSPTSLGPPPHPRQFFSRP--KAATHLTIQEVP 231
R SN F L P + P F S A+ L +++
Sbjct: 409 FSERKLKFSNR------F--L--------PVAS-P------FHS-HLLVPASDLINKDLV 444
Query: 232 HLMVSTQGNPSHGRLP---TLSEDEIRLGDRVIIRNEIRLGDRVIIR-------SSQGSK 281
VS N ++P T ++R+ I + IIR ++Q
Sbjct: 445 KNNVS--FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC----IIRLPVKWETTTQFKA 498
Query: 282 SGVLKYKGDTYFADGEWCGVELDDPL-GKN-DGSVDGVR 318
+ +L D F G G+ L +N DG+ GVR
Sbjct: 499 THIL----D--FGPGGASGLG---VLTHRNKDGT--GVR 526
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Length = 615
Score = 28.7 bits (65), Expect = 3.6
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 7/25 (28%)
Query: 251 EDEIRLGDRVIIRNEIRLGDRVIIR 275
EI+ R + +GD V+IR
Sbjct: 371 ASEIK-------RKGVLIGDTVVIR 388
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A
{Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2
PDB: 1v9p_A*
Length = 667
Score = 28.6 bits (65), Expect = 3.8
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 7/25 (28%)
Query: 251 EDEIRLGDRVIIRNEIRLGDRVIIR 275
E I +IR+GD V++
Sbjct: 359 ESYIE-------ELDIRIGDWVLVH 376
>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD,
LEFT-handed parallel beta helix, acyl carrier protein,
antibiotic resistance; 2.60A {Escherichia coli}
Length = 341
Score = 27.6 bits (62), Expect = 6.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 255 RLGDRVIIRNEIRLGDRVIIRS 276
RL V I +EI++G +I+S
Sbjct: 153 RLWANVTIYHEIQIGQNCLIQS 174
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 27.3 bits (60), Expect = 7.9
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 266 IRLGDRVIIRSSQGSKSGV-LKYKGDTYFADGEWCGVELDDPLGKNDGSV----DGVRYF 320
++ GDRV++ S+ V L+ + G ++L++ K G + G + +
Sbjct: 20 LKPGDRVLLSFEDESEFLVDLEKDKKLHTHLGI---IDLNEVFEKGPGEIIRTSAGKKGY 76
Query: 321 YCEPRF 326
P
Sbjct: 77 ILIPSL 82
>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics,
center for STR genomics of infectious diseases, csgid;
2.61A {Vibrio cholerae o1 biovar el tor}
Length = 212
Score = 27.2 bits (60), Expect = 8.1
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 207 GPPPHPRQFFSRPKAATHLTIQEVPHLMVSTQGNPSHGRLPTLSEDEIRLGDRVIIRNEI 266
G H + S Q+ + + G G T+ ++ +G +I +
Sbjct: 77 GNQGHRSDWIST----FPFFYQDNDNFADARDGFTRSG--DTIIGHDVWIGTEAMIMPGV 130
Query: 267 RLGDRVII 274
++G II
Sbjct: 131 KIGHGAII 138
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 27.0 bits (59), Expect = 8.8
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 266 IRLGDRVIIRSSQGSK-SGVLKYKGDTYFADGEWCGVELDDPLGKNDGSV----DGVRYF 320
+G+RV + ++G + + L + + G + D +G GSV +G +
Sbjct: 7 FSIGERVQLTDAKGRRYTMSLTPGAEFHTHRGS---IAHDAVIGLEQGSVVKSSNGALFL 63
Query: 321 YCEPR 325
P
Sbjct: 64 VLRPL 68
>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A
biosynthesis pathway, transferase; 1.30A {Pseudomonas
aeruginosa}
Length = 372
Score = 27.2 bits (61), Expect = 8.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 255 RLGDRVIIRNEIRLGDRVIIRS 276
L RV + +++ +G RV I+S
Sbjct: 175 WLAPRVTLYHDVTIGARVSIQS 196
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.414
Gapped
Lambda K H
0.267 0.0695 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,607,780
Number of extensions: 333076
Number of successful extensions: 866
Number of sequences better than 10.0: 1
Number of HSP's gapped: 841
Number of HSP's successfully gapped: 81
Length of query: 365
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 270
Effective length of database: 4,049,298
Effective search space: 1093310460
Effective search space used: 1093310460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.2 bits)