RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4533
(365 letters)
>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 71
Score = 99.0 bits (247), Expect = 1e-26
Identities = 43/72 (59%), Positives = 61/72 (84%), Gaps = 3/72 (4%)
Query: 266 IRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPR 325
+++GDRV++ G+K+GV+++ G+T FA GEWCGVELD+PLGKNDG+V G RYF C+P+
Sbjct: 1 LKIGDRVLV---GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPK 57
Query: 326 FGVFAPVSKVSK 337
+G+FAPV KV+K
Sbjct: 58 YGLFAPVHKVTK 69
Score = 64.7 bits (158), Expect = 4e-14
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTR 37
+ LDEP GKNDG V G RYFQC PK+G+F+ ++++T+
Sbjct: 33 VELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTK 69
Score = 42.8 bits (101), Expect = 2e-06
Identities = 21/37 (56%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 131 IGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
IGDRV VGGT G + ++GET F G+W G LDEP
Sbjct: 3 IGDRVLVGGTKAGVVRFLGETDFAKGEWCGV-ELDEP 38
>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59
(1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 98.7 bits (246), Expect = 2e-26
Identities = 44/72 (61%), Positives = 55/72 (76%), Gaps = 3/72 (4%)
Query: 266 IRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPR 325
+RLGDRV++ G K+G L++ G T FA G+W GVELD+P GKNDGSV GVRYF C P+
Sbjct: 11 LRLGDRVLL---DGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPK 67
Query: 326 FGVFAPVSKVSK 337
G+FA VSK+SK
Sbjct: 68 QGLFASVSKISK 79
Score = 64.4 bits (157), Expect = 6e-14
Identities = 20/37 (54%), Positives = 30/37 (81%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTR 37
+ LDEP GKNDG+VGG RYF C PK G+F+ ++++++
Sbjct: 43 VELDEPEGKNDGSVGGVRYFICPPKQGLFASVSKISK 79
Score = 47.0 bits (112), Expect = 9e-08
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 121 YSMDSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEPD 168
M S +GDRV + G G + + G T+F G W G LDEP+
Sbjct: 3 NLMLSALGLRLGDRVLLDGQKTGTLRFCGTTEFASGQWVGV-ELDEPE 49
>d2coza1 b.34.10.1 (A:8-116) Centrosome-associated protein 350
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 99.5 bits (248), Expect = 2e-26
Identities = 35/75 (46%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Query: 265 EIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEP 324
+ +GDRV+I + G+L++KG+T FA G W GVELD P G N+G+ DG+ YF C+
Sbjct: 24 DFHIGDRVLI---GNVQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKE 80
Query: 325 RFGVFAPVSKVSKSP 339
+ G+FAP K+S P
Sbjct: 81 KHGIFAPPQKISHIP 95
Score = 62.5 bits (152), Expect = 5e-13
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSP 39
+ LD+P G N+GT G YF+C KHGIF+ +++ P
Sbjct: 57 VELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKISHIP 95
Score = 51.8 bits (124), Expect = 3e-09
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 111 KPQATHSSPLYSMDSTDS---FIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
+ Q T S L S+ + D F IGDRV +G PG + + GET F G WAG LD+P
Sbjct: 4 EQQVTESPSLASVPTADELFDFHIGDRVLIGNVQPGILRFKGETSFAKGFWAGV-ELDKP 62
>d2e3ia1 b.34.10.1 (A:58-128) Restin {Human (Homo sapiens) [TaxId:
9606]}
Length = 71
Score = 97.4 bits (243), Expect = 4e-26
Identities = 36/71 (50%), Positives = 52/71 (73%), Gaps = 3/71 (4%)
Query: 267 RLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPRF 326
R+G+RV + G+K G +++ G+T FA G+W G+ LD+P+GKNDGSV GVRYF CEP
Sbjct: 2 RVGERVWV---NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLK 58
Query: 327 GVFAPVSKVSK 337
G+F SK+++
Sbjct: 59 GIFTRPSKLTR 69
Score = 64.7 bits (158), Expect = 4e-14
Identities = 26/37 (70%), Positives = 31/37 (83%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTR 37
IVLDEP GKNDG+V G RYFQC+P GIF+R ++LTR
Sbjct: 33 IVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTR 69
Score = 46.2 bits (110), Expect = 1e-07
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 129 FIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
F +G+RV+V G PG I ++GET+F PG WAG LDEP
Sbjct: 1 FRVGERVWVNGNKPGFIQFLGETQFAPGQWAGI-VLDEP 38
>d1tova_ b.34.10.1 (A:) Cytoskeleton-associated protein F53F4.3
{Caenorhabditis elegans [TaxId: 6239]}
Length = 98
Score = 97.2 bits (242), Expect = 9e-26
Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 265 EIRLGDRVIIR-SSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCE 323
I +G+R + +Q ++ G + Y G T F +G W GV+ D+P+GKNDGSV GVRYF C+
Sbjct: 14 NIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCD 73
Query: 324 PRFGVFAPVSKVSKS 338
P++G F V
Sbjct: 74 PKYGGFVRPVDVKVG 88
Score = 60.6 bits (147), Expect = 2e-12
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSPLLHLSD 45
+ DEP GKNDG+V G RYF CDPK+G F R + LS
Sbjct: 51 VKYDEPVGKNDGSVAGVRYFDCDPKYGGFVRPVDVKVGDFPELSI 95
Score = 44.4 bits (105), Expect = 9e-07
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 121 YSMDSTDSFIIGDRVYV----GGTIPGKIAYIGETKFGPGDWAGKNRLDEPD 168
+ ++ + ++G+R V G++AY+G TKF G W G + DEP
Sbjct: 7 LNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGV-KYDEPV 57
>d2cowa1 b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 96.0 bits (239), Expect = 2e-25
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 265 EIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEP 324
+R G+ V + K+GV++Y G F +G W GVELD P GKNDGS+ G +YF C P
Sbjct: 17 WLREGEFVTV---GAHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCNP 73
Query: 325 RFGVFAPVSKVSKS 338
+G+ S+V ++
Sbjct: 74 GYGLLVRPSRVRRA 87
Score = 64.0 bits (156), Expect = 1e-13
Identities = 18/38 (47%), Positives = 30/38 (78%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRS 38
+ LD P+GKNDG++GG +YF+C+P +G+ R +R+ R+
Sbjct: 50 VELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVRRA 87
Score = 44.8 bits (106), Expect = 6e-07
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 113 QATHSSPLYSMDSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
QA S + + + G+ V VG G + Y+G F G W G LD P
Sbjct: 2 QALASDSEEADEVPEWLREGEFVTVGAHKTGVVRYVGPADFQEGTWVGV-ELDLP 55
>d1whha_ b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR-59
(1500005P14Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 102
Score = 95.3 bits (237), Expect = 6e-25
Identities = 43/102 (42%), Positives = 61/102 (59%), Gaps = 12/102 (11%)
Query: 236 STQGNPSHGRLPTLSEDEIRLGDRVIIRNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFAD 295
S+ +PS L +L + E + +GD+V++ G K G++++ G T FA
Sbjct: 5 SSGKSPSSPSLGSLQQREGA---------KAEVGDQVLV---AGQKQGIVRFYGKTDFAP 52
Query: 296 GEWCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSK 337
G W G+ELD P GK+DGSV GVRYF C PR GVFAP S++ +
Sbjct: 53 GYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVFAPASRIQR 94
Score = 61.0 bits (148), Expect = 2e-12
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 5/49 (10%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSPLLHLSDRPTS 49
I LD+PTGK+DG+V G RYF C P+HG+F+ +R+ R + P+S
Sbjct: 58 IELDQPTGKHDGSVFGVRYFTCAPRHGVFAPASRIQR-----IGSGPSS 101
Score = 42.5 bits (100), Expect = 5e-06
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 114 ATHSSPLYSMDSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
++ S +GD+V V G G + + G+T F PG W G LD+P
Sbjct: 11 SSPSLGSLQQREGAKAEVGDQVLVAGQKQGIVRFYGKTDFAPGYWYGI-ELDQP 63
>d1whja_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 102
Score = 93.4 bits (232), Expect = 3e-24
Identities = 40/73 (54%), Positives = 55/73 (75%), Gaps = 3/73 (4%)
Query: 265 EIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEP 324
++LGDRV+I G K G L++ G T FA G+W G+ELD+P GKN+GSV V+YF C P
Sbjct: 24 GLKLGDRVVI---AGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAP 80
Query: 325 RFGVFAPVSKVSK 337
++G+FAP+SK+SK
Sbjct: 81 KYGIFAPLSKISK 93
Score = 60.6 bits (147), Expect = 2e-12
Identities = 20/37 (54%), Positives = 31/37 (83%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTR 37
I LDEP GKN+G+VG +YF+C PK+GIF+ L+++++
Sbjct: 57 IELDEPEGKNNGSVGRVQYFKCAPKYGIFAPLSKISK 93
Score = 43.3 bits (102), Expect = 3e-06
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 122 SMDSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
+M ++ +GDRV + G G + + G T+F G WAG LDEP
Sbjct: 18 AMLTSLGLKLGDRVVIAGQKVGTLRFCGTTEFASGQWAGI-ELDEP 62
>d1whka_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 91
Score = 92.5 bits (230), Expect = 4e-24
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 265 EIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEP 324
++ G +V++ SS + ++Y G T FA G W G+EL GKNDG+V RYF C+P
Sbjct: 12 KLHEGSQVLLTSSN--EMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKP 69
Query: 325 RFGVFAPVSKVSKSPV 340
+GV S+V+ +
Sbjct: 70 NYGVLVRPSRVTYRGI 85
Score = 60.9 bits (148), Expect = 1e-12
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSPL 40
+ L GKNDG VG RYF C P +G+ R +R+T +
Sbjct: 46 LELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRVTYRGI 85
Score = 35.1 bits (81), Expect = 0.001
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 122 SMDSTDSFIIGDRVYV-GGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
S + T G +V + + Y+G T F G W G L
Sbjct: 6 SGEGTVKLHEGSQVLLTSSNEMATVRYVGPTDFASGIWLGL-ELRSA 51
>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 72
Score = 90.9 bits (226), Expect = 9e-24
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 266 IRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCEPR 325
+R+G RV + G + Y G T FA G+W GV LD+ GKNDG+V G +YF C+
Sbjct: 2 LRVGSRVEVIG--KGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEG 59
Query: 326 FGVFAPVSKV 335
G+F S++
Sbjct: 60 HGIFVRQSQI 69
Score = 59.7 bits (145), Expect = 2e-12
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLT 36
++LDE GKNDGTV G +YF CD HGIF R +++
Sbjct: 35 VILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQ 70
Score = 36.2 bits (84), Expect = 5e-04
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 131 IGDRVYV-GGTIPGKIAYIGETKFGPGDWAG 160
+G RV V G G +AY+G T F G W G
Sbjct: 4 VGSRVEVIGKGHRGTVAYVGATLFATGKWVG 34
>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 113
Score = 91.5 bits (227), Expect = 2e-23
Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 250 SEDEIRLGDRVIIRNEIRLGDRVIIRSS-QGSKSGVLKYKGDTYFADGEWCGVELDDPLG 308
+E RL + + I +G R +R+ + G + Y G T F G W GV D+PLG
Sbjct: 17 AEAAQRLSEEKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLG 76
Query: 309 KNDGSVDGVRYFYCEPRFGVFAPVSKVS 336
KNDGSV+G RYF C+ ++G F S V+
Sbjct: 77 KNDGSVNGKRYFECQAKYGAFVKPSAVT 104
Score = 58.0 bits (140), Expect = 2e-11
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTR 37
+ DEP GKNDG+V G RYF+C K+G F + + +T
Sbjct: 69 VRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTV 105
Score = 33.7 bits (77), Expect = 0.007
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 127 DSFIIGDRVYV----GGTIPGKIAYIGETKFGPGDWAGKNRLDEP 167
+ +G R V G + Y+G T F PG W G R DEP
Sbjct: 31 SAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGV-RYDEP 74
>d1whma_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
{Human (Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 84.5 bits (209), Expect = 4e-21
Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 266 IRLGDRVIIRSSQGSKSGVLKYKG--DTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCE 323
+ + RV ++ + +SG + + + G + GV++D+P+G DG DGV+
Sbjct: 10 LEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFA 69
Query: 324 -PRFGVFAPVSKVSKSP 339
+ ++ +
Sbjct: 70 CVESTILLHINDIIPES 86
Score = 49.8 bits (119), Expect = 1e-08
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCD-PKHGIFSRLNRLTRSP 39
+ +D P G DG G + + I +N +
Sbjct: 47 VDMDNPIGNWDGRFDGVQLCSFACVESTILLHINDIIPES 86
>d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId:
9606]}
Length = 160
Score = 85.5 bits (211), Expect = 1e-20
Identities = 44/76 (57%), Positives = 62/76 (81%), Gaps = 3/76 (3%)
Query: 264 NEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDDPLGKNDGSVDGVRYFYCE 323
E+++GDRV++ G+K+GV+++ G+T FA GEWCGVELD+PLGKNDG+V G RYF C+
Sbjct: 30 RELKIGDRVLV---GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQ 86
Query: 324 PRFGVFAPVSKVSKSP 339
P++G+FAPV KV+K
Sbjct: 87 PKYGLFAPVHKVTKIG 102
Score = 59.7 bits (144), Expect = 2e-11
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 1 IVLDEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSPLLHLSDRPTSRNSSVDEGRYS 60
+ LDEP GKNDG V G RYFQC PK+G+F+ ++++T+ + N+
Sbjct: 64 VELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPSTTPAKAKANAVRRVM--- 120
Query: 61 PFKKSSFDGLYSRKSSDGGLFSRTSPEDISTASP 94
++ R S L S +S ++ P
Sbjct: 121 ----ATTSASLKRSPSASSLSSMSSVASSVSSRP 150
Score = 38.9 bits (90), Expect = 3e-04
Identities = 29/163 (17%), Positives = 53/163 (32%), Gaps = 14/163 (8%)
Query: 99 SPLSAKYPSPPCKPQATHSSPLYSMDSTDSFIIGDRVYVGGTIPGKIAYIGETKFGPGDW 158
+P + + + S IGDRV VGGT G + ++GET F G+W
Sbjct: 2 TPPISNLTKTASESISNLSEAGSIKKGERELKIGDRVLVGGTKAGVVRFLGETDFAKGEW 61
Query: 159 AGKNRLDEPDRARIRHCPRASAISNAIR------STAIFSRLNALTRSPSPTSLGPPPHP 212
G LDEP + R +F+ ++ +T+ P++
Sbjct: 62 CGV-ELDEP-------LGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPSTTPAKAKA 113
Query: 213 RQFFSRPKAATHLTIQEVPHLMVSTQGNPSHGRLPTLSEDEIR 255
+ + +S+ + + S +
Sbjct: 114 NAVRRVMATTSASLKRSPSASSLSSMSSVASSVSSRPSRTGLL 156
>d1whla_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
{Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 81.1 bits (200), Expect = 9e-20
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 16/96 (16%)
Query: 254 IRLGDRVIIRNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFAD---GEWCGVELDD---PL 307
I +G V +V +RS + GV++++G G + GVEL +
Sbjct: 8 IDVGCPV----------KVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQ 57
Query: 308 GKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSPVQAS 343
G DG G + F C+ GVF + K+ S
Sbjct: 58 GFTDGVYQGKQLFQCDEDCGVFVALDKLELIESGPS 93
Score = 53.3 bits (128), Expect = 7e-10
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 6 PTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSPLLHLSDRPTS 49
G DG G + FQCD G+F L++L + P+S
Sbjct: 56 GQGFTDGVYQGKQLFQCDEDCGVFVALDKLEL-----IESGPSS 94
Score = 28.3 bits (63), Expect = 0.40
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 9/52 (17%)
Query: 131 IGDRVYV-----GGTIPGKIAYIGETKFGP---GDWAGKNRLDEPDRARIRH 174
+G V V PG + + G G + G L E R +
Sbjct: 10 VGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGV-ELLEEGRGQGFT 60
>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 80.7 bits (199), Expect = 1e-19
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 264 NEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCGVELDD-PLGKNDGSVDGVRYFYC 322
+ + +G + GV+++ G + G+EL+D G DG+ G RYF C
Sbjct: 16 HGLEVGSLAEV-KENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTC 74
Query: 323 EPRFGVFAPVSKVSKSP 339
+ +F +
Sbjct: 75 ALKKALFVKLKSCRPDS 91
Score = 55.6 bits (134), Expect = 1e-10
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 4 DEPTGKNDGTVGGFRYFQCDPKHGIFSRLNRLTRSPLLHLSDRPTSRNSS 53
DE G DGT G RYF C K +F +L + S SS
Sbjct: 56 DECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDS--RFASLQPSGPSS 103
Score = 40.2 bits (94), Expect = 4e-05
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 125 STDSFIIGDRVYVGGTIP--GKIAYIGETKFGPGDWAGKNRLDEP 167
++ +G V P G I +IG+ AG DE
Sbjct: 14 NSHGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDEC 58
>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga
maritima [TaxId: 2336]}
Length = 266
Score = 31.6 bits (71), Expect = 0.12
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 8/68 (11%)
Query: 264 NEIRLGDRVIIRSSQGSKSGVLKYKGDTYF-ADGEWCGVELDDPLGKNDGSV----DGVR 318
+ ++ GDRV++ S+ V K G ++L++ K G + G +
Sbjct: 9 DTLKPGDRVLLSFEDESEFLVDLEKDKKLHTHLGI---IDLNEVFEKGPGEIIRTSAGKK 65
Query: 319 YFYCEPRF 326
+ P
Sbjct: 66 GYILIPSL 73
>d2r4qa1 c.44.2.2 (A:171-273) Fructose-specific enzyme IIABC
component FruA, middle domain {Bacillus subtilis [TaxId:
1423]}
Length = 103
Score = 26.9 bits (60), Expect = 1.7
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 7/48 (14%)
Query: 235 VSTQGNPSHGRLPTLSEDEIRLGDRVIIRNEI-----RLGDRVIIRSS 277
V T G S G L+ EI +I+ + R + +++
Sbjct: 35 VETNG--SSGIKHKLTAQEIEDAPAIIVAADKQVEMERFKGKRVLQVP 80
>d2r48a1 c.44.2.2 (A:2-104) Mannose-specific enzyme IIBCA component
ManP, N-terminal domain {Bacillus subtilis [TaxId:
1423]}
Length = 103
Score = 26.5 bits (59), Expect = 1.8
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 235 VSTQGNPSHGRLPTLSEDEIRLGDRVIIRNEI-----RLGDRVIIRSS 277
V TQG G L+E+EIR D +II + R + ++
Sbjct: 35 VETQG--GIGVENKLTEEEIREADAIIIAADRSVNKDRFIGKKLLSVG 80
>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase
BC4754 {Bacillus cereus [TaxId: 1396]}
Length = 172
Score = 27.2 bits (59), Expect = 2.5
Identities = 14/127 (11%), Positives = 34/127 (26%), Gaps = 7/127 (5%)
Query: 241 PSHGRLPTLSEDEIRLGDRVIIRNEIRLGDRVIIRSSQGSKSGVLKYKGDTYFADGEWCG 300
P + P ++ + D V I ++ +G+ I + + V + C
Sbjct: 7 PYKEKKPKIASS-AFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCT 65
Query: 301 VELDDPLG------KNDGSVDGVRYFYCEPRFGVFAPVSKVSKSPVQASGHASKNCVVHP 354
+ G + + + + + + + +V
Sbjct: 66 LHQSPQYPLILEDDVTVGHQVILHSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQ 125
Query: 355 SKDIPTY 361
K IP
Sbjct: 126 GKKIPPN 132
>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 173
Score = 26.9 bits (58), Expect = 2.8
Identities = 14/124 (11%), Positives = 33/124 (26%), Gaps = 7/124 (5%)
Query: 244 GRLPTLSEDEIRLGDRVIIRNEIRLGDRVII------RSSQGSKSGVLKYKGDTYFADGE 297
G+ P + + + ++ ++ L ++ + R +
Sbjct: 8 GKKPRIHPS-AFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHT 66
Query: 298 WCGVELDDPLGKNDGSVDGVRYFYCEPRFGVFAPVSKVSKSPVQASGHASKNCVVHPSKD 357
G + G V + + + + VV P+K+
Sbjct: 67 SHGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKE 126
Query: 358 IPTY 361
IP Y
Sbjct: 127 IPDY 130
>d1cz5a1 b.52.2.3 (A:1-91) N-terminal domain of VAT-N, VAT-Nn
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 91
Score = 25.1 bits (55), Expect = 5.5
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 244 GRLPTLSEDEIRLGDRVIIRN-EIRLGDRVIIRSSQ 278
R ++ +R+ D V+ N +GD+V +R +
Sbjct: 57 ARPEDENKGIVRI-DSVMRNNCGASIGDKVKVRKVR 91
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.136 0.414
Gapped
Lambda K H
0.267 0.0709 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,384,969
Number of extensions: 64801
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 53
Length of query: 365
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 278
Effective length of database: 1,213,086
Effective search space: 337237908
Effective search space used: 337237908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.2 bits)