BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4538
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 294 bits (752), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 145/224 (64%), Positives = 176/224 (78%), Gaps = 3/224 (1%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
ILLFGPPGTGKTLIGKC+A+Q ATFF ISAS+LTSKW GEGEKMVRALFAVA QP++
Sbjct: 120 ILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAV 179
Query: 61 IFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAAR 120
IFIDEIDSLL QR D E+E+SRR+KTEFL+ LDGA+T +D +LV+GATNRPQE+DEAAR
Sbjct: 180 IFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAAR 239
Query: 121 RRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREAS 180
RRLVKRLYIPLP+ AR +IV L+ L+ ++IE++ + + FSGADM LCREAS
Sbjct: 240 RRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREAS 299
Query: 181 LGPVRSI---DLSRIDALDVRPISIDDFRDALKTVRPSVCQADF 221
LGP+RS+ D++ I VRPI+ DF +A +TVRPSV D
Sbjct: 300 LGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDL 343
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/78 (74%), Positives = 70/78 (89%)
Query: 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQEL 282
QP++IFIDEIDSLL QR D E+E+SRR+KTEFL+ LDGA+T +D +LV+GATNRPQE+
Sbjct: 175 QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEI 234
Query: 283 DEAARRRLVKRLYIPLPD 300
DEAARRRLVKRLYIPLP+
Sbjct: 235 DEAARRRLVKRLYIPLPE 252
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 315 DQENETSRRLKTEFLISLDGASTLDDD 341
D E+E+SRR+KTEFL+ LDGA+T +D
Sbjct: 194 DGEHESSRRIKTEFLVQLDGATTSSED 220
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 237 bits (604), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 116/220 (52%), Positives = 162/220 (73%), Gaps = 3/220 (1%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+LLFGPPG GKT++ K VAA+ ATFF ISA++LTSK+ GEGEK+VRALFAVA QPSI
Sbjct: 151 LLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSI 210
Query: 61 IFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAAR 120
IFID++DSLLC+R + E++ SRRLKTEFLI DG + DD VLV+GATNRPQELDEA
Sbjct: 211 IFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVL 270
Query: 121 RRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREAS 180
RR +KR+Y+ LP+E+ R ++ LL + LT ++ ++ RMT +SG+D+ +L ++A+
Sbjct: 271 RRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAA 330
Query: 181 LGPVRSI---DLSRIDALDVRPISIDDFRDALKTVRPSVC 217
LGP+R + + + A ++R I + DF ++LK ++ SV
Sbjct: 331 LGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVS 370
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 65/79 (82%)
Query: 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELD 283
QPSIIFID++DSLLC+R + E++ SRRLKTEFLI DG + DD VLV+GATNRPQELD
Sbjct: 207 QPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELD 266
Query: 284 EAARRRLVKRLYIPLPDEQ 302
EA RR +KR+Y+ LP+E+
Sbjct: 267 EAVLRRFIKRVYVSLPNEE 285
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 312 DKIDQENETSRRLKTEFLISLDGASTLDDD 341
++ + E++ SRRLKTEFLI DG + DD
Sbjct: 222 ERREGEHDASRRLKTEFLIEFDGVQSAGDD 251
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 215 bits (548), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 158/221 (71%), Gaps = 4/221 (1%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+LLFGPPG GKTL+ + VA +C ATF ISA++LTSK+ G+GEK+VRALFAVA QPSI
Sbjct: 57 LLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSI 116
Query: 61 IFIDEIDSLLCQRSDQENETSRRLKTEFLISLDG-ASTLDDDLVLVIGATNRPQELDEAA 119
IFIDE+DSLL +RS E+E SRRLKTEFL+ DG D D ++V+ ATNRPQELDEAA
Sbjct: 117 IFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176
Query: 120 RRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREA 179
RR KR+Y+ LPDEQ R ++ +LL+ + L + + + ++T +SG+D+ +L ++A
Sbjct: 177 LRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDA 236
Query: 180 SLGPVRSIDLSRIDALDV---RPISIDDFRDALKTVRPSVC 217
+L P+R +++ ++ LD+ R I+ DF +LK +R SV
Sbjct: 237 ALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVA 277
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 68/97 (70%), Gaps = 2/97 (2%)
Query: 207 DALKTVRPSVCQADFVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDG-ASTL 265
D K VR A + QPSIIFIDE+DSLL +RS E+E SRRLKTEFL+ DG
Sbjct: 97 DGEKLVRALFAVARHM-QPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP 155
Query: 266 DDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQ 302
D D ++V+ ATNRPQELDEAA RR KR+Y+ LPDEQ
Sbjct: 156 DGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQ 192
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 318 NETSRRLKTEFLISLDG 334
+E SRRLKTEFL+ DG
Sbjct: 134 HEASRRLKTEFLVEFDG 150
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 198 bits (503), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 99/188 (52%), Positives = 132/188 (70%), Gaps = 2/188 (1%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCK-ATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPS 59
ILLFGPPGTGK+ + K VA + +TFF IS+S L SKW GE EK+V+ LF +A ++PS
Sbjct: 170 ILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPS 229
Query: 60 IIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAA 119
IIFIDEIDSL RS+ E+E +RR+KTEFL+ + G +D+D +LV+GATN P LD A
Sbjct: 230 IIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG-VDNDGILVLGATNIPWVLDSAI 288
Query: 120 RRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREA 179
RRR KR+YIPLP+ AR + L + NSLT D +E+GR T +SGAD++ + R+A
Sbjct: 289 RRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDA 348
Query: 180 SLGPVRSI 187
+ PVR +
Sbjct: 349 LMQPVRKV 356
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 60/78 (76%), Gaps = 1/78 (1%)
Query: 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQEL 282
++PSIIFIDEIDSL RS+ E+E +RR+KTEFL+ + G +D+D +LV+GATN P L
Sbjct: 226 NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG-VDNDGILVLGATNIPWVL 284
Query: 283 DEAARRRLVKRLYIPLPD 300
D A RRR KR+YIPLP+
Sbjct: 285 DSAIRRRFEKRIYIPLPE 302
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 315 DQENETSRRLKTEFLISLDGASTLDDDL 342
+ E+E +RR+KTEFL+ + G +D +
Sbjct: 245 ENESEAARRIKTEFLVQMQGVGVDNDGI 272
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 99/188 (52%), Positives = 130/188 (69%), Gaps = 2/188 (1%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCK-ATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPS 59
ILLFGPPGTGK+ + K VA + +TFF IS+S L SKW GE EK+V+ LF +A ++PS
Sbjct: 48 ILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPS 107
Query: 60 IIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAA 119
IIFIDEIDSL RS+ E+E +RR+KTEFL+ + G +D+D +LV+GATN P LD A
Sbjct: 108 IIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG-VDNDGILVLGATNIPWVLDSAI 166
Query: 120 RRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREA 179
RRR KR+YIPLP+ AR + L NSLT D E+GR T +SGAD++ + R+A
Sbjct: 167 RRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDA 226
Query: 180 SLGPVRSI 187
+ PVR +
Sbjct: 227 LMQPVRKV 234
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Query: 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQEL 282
++PSIIFIDEIDSL RS+ E+E +RR+KTEFL+ + G +D+D +LV+GATN P L
Sbjct: 104 NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG-VDNDGILVLGATNIPWVL 162
Query: 283 DEAARRRLVKRLYIPLPDEQ 302
D A RRR KR+YIPLP+
Sbjct: 163 DSAIRRRFEKRIYIPLPEPH 182
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 315 DQENETSRRLKTEFLISLDGASTLDDDL 342
+ E+E +RR+KTEFL+ + G +D +
Sbjct: 123 ENESEAARRIKTEFLVQMQGVGVDNDGI 150
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 191 bits (484), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 150/258 (58%), Gaps = 35/258 (13%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
ILL+GPPGTGK+ + K VA + +TFF +S+S L SKW GE EK+V+ LFA+A ++PSI
Sbjct: 87 ILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSI 146
Query: 61 IFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAAR 120
IFID++D+L R + E+E SRR+KTE L+ ++G D VLV+GATN P +LD A R
Sbjct: 147 IFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN-DSQGVLVLGATNIPWQLDSAIR 205
Query: 121 RRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREAS 180
RR +R+YIPLPD AR + + + + LT +D +G MT +SG+D+A + ++A
Sbjct: 206 RRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDAL 265
Query: 181 LGPVRSI-------DLS---------------------------RIDALDVRPISIDDFR 206
+ P+R I D+S D L ++I DF
Sbjct: 266 MQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFL 325
Query: 207 DALKTVRPSVCQADFVHQ 224
A+K+ RP+V + D + Q
Sbjct: 326 KAIKSTRPTVNEDDLLKQ 343
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
Query: 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQEL 282
++PSIIFID++D+L R + E+E SRR+KTE L+ ++G D VLV+GATN P +L
Sbjct: 142 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN-DSQGVLVLGATNIPWQL 200
Query: 283 DEAARRRLVKRLYIPLPD 300
D A RRR +R+YIPLPD
Sbjct: 201 DSAIRRRFERRIYIPLPD 218
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 189 bits (479), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/258 (40%), Positives = 149/258 (57%), Gaps = 35/258 (13%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
ILL+GPPGTGK+ + K VA + +TFF +S+S L SKW GE EK+V+ LFA+A ++PSI
Sbjct: 63 ILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSI 122
Query: 61 IFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAAR 120
IFIDE+D+L R + E+E SRR+KTE L+ ++G D VLV+GATN P +LD A R
Sbjct: 123 IFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGN-DSQGVLVLGATNIPWQLDSAIR 181
Query: 121 RRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREAS 180
RR +R+YIPLPD AR + + + LT +D +G MT +SG+D+A + ++A
Sbjct: 182 RRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDAL 241
Query: 181 LGPVRSI-------DLS---------------------------RIDALDVRPISIDDFR 206
+ P+R I D+S D L ++I DF
Sbjct: 242 MQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFL 301
Query: 207 DALKTVRPSVCQADFVHQ 224
A+K+ RP+V + D + Q
Sbjct: 302 KAIKSTRPTVNEDDLLKQ 319
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
Query: 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQEL 282
++PSIIFIDE+D+L R + E+E SRR+KTE L+ ++G D VLV+GATN P +L
Sbjct: 118 NKPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGN-DSQGVLVLGATNIPWQL 176
Query: 283 DEAARRRLVKRLYIPLPD 300
D A RRR +R+YIPLPD
Sbjct: 177 DSAIRRRFERRIYIPLPD 194
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 187 bits (476), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 149/258 (57%), Gaps = 35/258 (13%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
ILL+GPPGTGK+ + K VA + +TFF +S+S L SKW GE EK+V+ LFA+A ++PSI
Sbjct: 72 ILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSI 131
Query: 61 IFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAAR 120
IFID++D+L R + E+E SRR+KTE L+ ++G D VLV+GATN P +LD A R
Sbjct: 132 IFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN-DSQGVLVLGATNIPWQLDSAIR 190
Query: 121 RRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREAS 180
RR +R+YIPLPD AR + + + LT +D +G MT +SG+D+A + ++A
Sbjct: 191 RRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDAL 250
Query: 181 LGPVRSI-------DLS---------------------------RIDALDVRPISIDDFR 206
+ P+R I D+S D L ++I DF
Sbjct: 251 MQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFL 310
Query: 207 DALKTVRPSVCQADFVHQ 224
A+K+ RP+V + D + Q
Sbjct: 311 KAIKSTRPTVNEDDLLKQ 328
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
Query: 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQEL 282
++PSIIFID++D+L R + E+E SRR+KTE L+ ++G D VLV+GATN P +L
Sbjct: 127 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN-DSQGVLVLGATNIPWQL 185
Query: 283 DEAARRRLVKRLYIPLPD 300
D A RRR +R+YIPLPD
Sbjct: 186 DSAIRRRFERRIYIPLPD 203
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 187 bits (475), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 149/258 (57%), Gaps = 35/258 (13%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
ILL+GPPGTGK+ + K VA + +TFF +S+S L SKW GE EK+V+ LFA+A ++PSI
Sbjct: 54 ILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSI 113
Query: 61 IFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAAR 120
IFID++D+L R + E+E SRR+KTE L+ ++G D VLV+GATN P +LD A R
Sbjct: 114 IFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN-DSQGVLVLGATNIPWQLDSAIR 172
Query: 121 RRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREAS 180
RR +R+YIPLPD AR + + + LT +D +G MT +SG+D+A + ++A
Sbjct: 173 RRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDAL 232
Query: 181 LGPVRSI-------DLS---------------------------RIDALDVRPISIDDFR 206
+ P+R I D+S D L ++I DF
Sbjct: 233 MQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFL 292
Query: 207 DALKTVRPSVCQADFVHQ 224
A+K+ RP+V + D + Q
Sbjct: 293 KAIKSTRPTVNEDDLLKQ 310
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
Query: 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQEL 282
++PSIIFID++D+L R + E+E SRR+KTE L+ ++G D VLV+GATN P +L
Sbjct: 109 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN-DSQGVLVLGATNIPWQL 167
Query: 283 DEAARRRLVKRLYIPLPD 300
D A RRR +R+YIPLPD
Sbjct: 168 DSAIRRRFERRIYIPLPD 185
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 133/241 (55%), Gaps = 13/241 (5%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
ILL+GPPGTGKTLI + VA + A FF I+ + SK GE E +R F A + P+I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 61 IFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAAR 120
IFIDE+D++ +R E RR+ ++ L +DG V+V+ ATNRP +D A R
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH--VIVMAATNRPNSIDPALR 358
Query: 121 R--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCRE 178
R R + + I +PD R EI+ +N+ + V D+E+V T GAD+A+LC E
Sbjct: 359 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV-DLEQVANETHGHVGADLAALCSE 417
Query: 179 ASLGPVRS----IDL--SRIDA--LDVRPISIDDFRDALKTVRPSVCQADFVHQPSIIFI 230
A+L +R IDL IDA ++ +++DDFR AL PS + V P + +
Sbjct: 418 AALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWE 477
Query: 231 D 231
D
Sbjct: 478 D 478
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQEL 282
+ P+IIFIDE+D++ +R E RR+ ++ L +DG V+V+ ATNRP +
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH--VIVMAATNRPNSI 353
Query: 283 DEAARR--RLVKRLYIPLPD 300
D A RR R + + I +PD
Sbjct: 354 DPALRRFGRFDREVDIGIPD 373
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 133/241 (55%), Gaps = 13/241 (5%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
ILL+GPPGTGKTLI + VA + A FF I+ + SK GE E +R F A + P+I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 61 IFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAAR 120
IFIDE+D++ +R E RR+ ++ L +DG V+V+ ATNRP +D A R
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH--VIVMAATNRPNSIDPALR 358
Query: 121 R--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCRE 178
R R + + I +PD R EI+ +N+ + V D+E+V T GAD+A+LC E
Sbjct: 359 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV-DLEQVANETHGHVGADLAALCSE 417
Query: 179 ASLGPVRS----IDL--SRIDA--LDVRPISIDDFRDALKTVRPSVCQADFVHQPSIIFI 230
A+L +R IDL IDA ++ +++DDFR AL PS + V P + +
Sbjct: 418 AALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWE 477
Query: 231 D 231
D
Sbjct: 478 D 478
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQEL 282
+ P+IIFIDE+D++ +R E RR+ ++ L +DG V+V+ ATNRP +
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH--VIVMAATNRPNSI 353
Query: 283 DEAARR--RLVKRLYIPLPD 300
D A RR R + + I +PD
Sbjct: 354 DPALRRFGRFDREVDIGIPD 373
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 133/241 (55%), Gaps = 13/241 (5%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
ILL+GPPGTGKTLI + VA + A FF I+ + SK GE E +R F A + P+I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 61 IFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAAR 120
IFIDE+D++ +R E RR+ ++ L +DG V+V+ ATNRP +D A R
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH--VIVMAATNRPNSIDPALR 358
Query: 121 R--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCRE 178
R R + + I +PD R EI+ +N+ + V D+E+V T GAD+A+LC E
Sbjct: 359 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV-DLEQVANETHGHVGADLAALCSE 417
Query: 179 ASLGPVRS----IDL--SRIDA--LDVRPISIDDFRDALKTVRPSVCQADFVHQPSIIFI 230
A+L +R IDL IDA ++ +++DDFR AL PS + V P + +
Sbjct: 418 AALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWE 477
Query: 231 D 231
D
Sbjct: 478 D 478
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQEL 282
+ P+IIFIDE+D++ +R E RR+ ++ L +DG V+V+ ATNRP +
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH--VIVMAATNRPNSI 353
Query: 283 DEAARR--RLVKRLYIPLPD 300
D A RR R + + I +PD
Sbjct: 354 DPALRRFGRFDREVDIGIPD 373
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 133/241 (55%), Gaps = 13/241 (5%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
ILL+GPPGTGKTLI + VA + A FF I+ + SK GE E +R F A + P+I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 61 IFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAAR 120
IFIDE+D++ +R E RR+ ++ L +DG V+V+ ATNRP +D A R
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH--VIVMAATNRPNSIDPALR 358
Query: 121 R--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCRE 178
R R + + I +PD R EI+ +N+ + V D+E+V T GAD+A+LC E
Sbjct: 359 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV-DLEQVANETHGHVGADLAALCSE 417
Query: 179 ASLGPVRS----IDL--SRIDA--LDVRPISIDDFRDALKTVRPSVCQADFVHQPSIIFI 230
A+L +R IDL IDA ++ +++DDFR AL PS + V P + +
Sbjct: 418 AALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWE 477
Query: 231 D 231
D
Sbjct: 478 D 478
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 105/184 (57%), Gaps = 8/184 (4%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+L +GPPG GKTL+ K +A +C+A F I L + W+GE E VR +F A P +
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573
Query: 61 IFIDEIDSLLCQR---SDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDE 117
+F DE+DS+ R + R+ + L +DG ST + V +IGATNRP +D
Sbjct: 574 LFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN--VFIIGATNRPDIIDP 631
Query: 118 AARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASL 175
A R RL + +YIPLPDE++R I+ LR + V D+E + +MT FSGAD+ +
Sbjct: 632 AILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV-DLEFLAKMTNGFSGADLTEI 690
Query: 176 CREA 179
C+ A
Sbjct: 691 CQRA 694
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQEL 282
+ P+IIFIDE+D++ +R E RR+ ++ L +DG V+V+ ATNRP +
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH--VIVMAATNRPNSI 353
Query: 283 DEAARR--RLVKRLYIPLPD 300
D A RR R + + I +PD
Sbjct: 354 DPALRRFGRFDREVDIGIPD 373
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 7/83 (8%)
Query: 225 PSIIFIDEIDSLLCQRSDQENE---TSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQE 281
P ++F DE+DS+ R + + R+ + L +DG ST + V +IGATNRP
Sbjct: 571 PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN--VFIIGATNRPDI 628
Query: 282 LDEAARR--RLVKRLYIPLPDEQ 302
+D A R RL + +YIPLPDE+
Sbjct: 629 IDPAILRPGRLDQLIYIPLPDEK 651
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 133/241 (55%), Gaps = 13/241 (5%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
ILL+GPPGTGKTLI + VA + A FF I+ + SK GE E +R F A + P+I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 61 IFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAAR 120
IFIDE+D++ +R E RR+ ++ L +DG V+V+ ATNRP +D A R
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH--VIVMAATNRPNSIDPALR 358
Query: 121 R--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCRE 178
R R + + I +PD R EI+ +N+ + V D+E+V T GAD+A+LC E
Sbjct: 359 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV-DLEQVANETHGHVGADLAALCSE 417
Query: 179 ASLGPVRS----IDL--SRIDA--LDVRPISIDDFRDALKTVRPSVCQADFVHQPSIIFI 230
A+L +R IDL IDA ++ +++DDFR AL PS + V P + +
Sbjct: 418 AALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWE 477
Query: 231 D 231
D
Sbjct: 478 D 478
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 105/184 (57%), Gaps = 8/184 (4%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+L +GPPG GKTL+ K +A +C+A F I L + W+GE E VR +F A P +
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 573
Query: 61 IFIDEIDSLLCQR---SDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDE 117
+F DE+DS+ R + R+ + L +DG ST + V +IGATNRP +D
Sbjct: 574 LFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN--VFIIGATNRPDIIDP 631
Query: 118 AARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASL 175
A R RL + +YIPLPDE++R I+ LR + V D+E + +MT FSGAD+ +
Sbjct: 632 AILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV-DLEFLAKMTNGFSGADLTEI 690
Query: 176 CREA 179
C+ A
Sbjct: 691 CQRA 694
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQEL 282
+ P+IIFIDE+D++ +R E RR+ ++ L +DG V+V+ ATNRP +
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH--VIVMAATNRPNSI 353
Query: 283 DEAARR--RLVKRLYIPLPD 300
D A RR R + + I +PD
Sbjct: 354 DPALRRFGRFDREVDIGIPD 373
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 7/83 (8%)
Query: 225 PSIIFIDEIDSLLCQRSDQENE---TSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQE 281
P ++F DE+DS+ R + + R+ + L +DG ST + V +IGATNRP
Sbjct: 571 PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN--VFIIGATNRPDI 628
Query: 282 LDEAARR--RLVKRLYIPLPDEQ 302
+D A R RL + +YIPLPDE+
Sbjct: 629 IDPAILRPGRLDQLIYIPLPDEK 651
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 125/219 (57%), Gaps = 13/219 (5%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
ILL+GPPGTGKTLI + VA + A FF I+ + SK GE E +R F A + P+I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 61 IFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAAR 120
IFIDE+D++ +R E RR+ ++ L +DG V+V+ ATNRP +D A R
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH--VIVMAATNRPNSIDPALR 358
Query: 121 R--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCRE 178
R R + + I +PD R EI+ +N+ + V D+E+V T GAD+A+LC E
Sbjct: 359 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV-DLEQVANETHGHVGADLAALCSE 417
Query: 179 ASLGPVRS----IDL--SRIDA--LDVRPISIDDFRDAL 209
A+L +R IDL IDA ++ +++DDFR AL
Sbjct: 418 AALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWAL 456
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQEL 282
+ P+IIFIDE+D++ +R E RR+ ++ L +DG V+V+ ATNRP +
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH--VIVMAATNRPNSI 353
Query: 283 DEAARR--RLVKRLYIPLPD 300
D A RR R + + I +PD
Sbjct: 354 DPALRRFGRFDREVDIGIPD 373
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 138 bits (347), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 124/218 (56%), Gaps = 19/218 (8%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
ILL+GPPGTGKTL+ K VA + ATF + S L K+ GEG +V+ +F +A PSI
Sbjct: 54 ILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSI 113
Query: 61 IFIDEIDSLLCQRSDQ----ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELD 116
IFIDEID++ +R+D + E R L + L +DG D V +IGATNRP LD
Sbjct: 114 IFIDEIDAIAAKRTDALTGGDREVQRTL-MQLLAEMDGFDARGD--VKIIGATNRPDILD 170
Query: 117 EAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMAS 174
A R R + + +P PDE+ R EI+ R + + V ++EE+ +MT GA++ +
Sbjct: 171 PAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDV-NLEEIAKMTEGCVGAELKA 229
Query: 175 LCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTV 212
+C EA + +R + +++DDFR A++ +
Sbjct: 230 ICTEAGMNAIRELRDY---------VTMDDFRKAVEKI 258
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 48/84 (57%), Gaps = 9/84 (10%)
Query: 225 PSIIFIDEIDSLLCQRSDQ----ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ 280
PSIIFIDEID++ +R+D + E R L + L +DG D V +IGATNRP
Sbjct: 111 PSIIFIDEIDAIAAKRTDALTGGDREVQRTL-MQLLAEMDGFDARGD--VKIIGATNRPD 167
Query: 281 ELDEAARR--RLVKRLYIPLPDEQ 302
LD A R R + + +P PDE+
Sbjct: 168 ILDPAILRPGRFDRIIEVPAPDEK 191
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 114/192 (59%), Gaps = 12/192 (6%)
Query: 2 LLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSII 61
L++GPPGTGKTL+ + AAQ ATF ++A L + GEG K+VR FA+A P+II
Sbjct: 219 LMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTII 278
Query: 62 FIDEIDSLLCQRSDQENETSR---RLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEA 118
FIDE+D++ +R D E R R E L LDG S+ DD V V+ ATNR LD A
Sbjct: 279 FIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS--DDRVKVLAATNRVDVLDPA 336
Query: 119 ARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDI--EEVGRMTTDFSGADMAS 174
R RL +++ PLP E +R +I+ R +T T DDI +E+ R T +F+GA + +
Sbjct: 337 LLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMT---TDDDINWQELARSTDEFNGAQLKA 393
Query: 175 LCREASLGPVRS 186
+ EA + +R+
Sbjct: 394 VTVEAGMIALRN 405
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 225 PSIIFIDEIDSLLCQRSDQENETSR---RLKTEFLISLDGASTLDDDLVLVIGATNRPQE 281
P+IIFIDE+D++ +R D E R R E L LDG S+ DD V V+ ATNR
Sbjct: 275 PTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS--DDRVKVLAATNRVDV 332
Query: 282 LDEAARR--RLVKRLYIPLPDE 301
LD A R RL +++ PLP E
Sbjct: 333 LDPALLRSGRLDRKIEFPLPSE 354
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 105/184 (57%), Gaps = 8/184 (4%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+L +GPPG GKTL+ K +A +C+A F I L + W+GE E VR +F A P +
Sbjct: 52 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 111
Query: 61 IFIDEIDSLLCQR---SDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDE 117
+F DE+DS+ R + R+ + L +DG ST + V +IGATNRP +D
Sbjct: 112 LFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN--VFIIGATNRPDIIDP 169
Query: 118 AARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASL 175
A R RL + +YIPLPDE++R I+ LR + V D+E + +MT FSGAD+ +
Sbjct: 170 AILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV-DLEFLAKMTNGFSGADLTEI 228
Query: 176 CREA 179
C+ A
Sbjct: 229 CQRA 232
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 7/83 (8%)
Query: 225 PSIIFIDEIDSLLCQRSDQENE---TSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQE 281
P ++F DE+DS+ R + + R+ + L +DG ST + V +IGATNRP
Sbjct: 109 PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN--VFIIGATNRPDI 166
Query: 282 LDEAARR--RLVKRLYIPLPDEQ 302
+D A R RL + +YIPLPDE+
Sbjct: 167 IDPAILRPGRLDQLIYIPLPDEK 189
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 104/190 (54%), Gaps = 8/190 (4%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+LL+GPPGTGKTL+ K VAA A F AS + K+ GE +++R +FA A H+P I
Sbjct: 218 VLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCI 277
Query: 61 IFIDEIDSLLCQRSDQENETSRRLK---TEFLISLDGASTLDDDLVLVIGATNRPQELDE 117
IF+DE+D++ +R + R ++ E L +DG L +++ ATNRP LD
Sbjct: 278 IFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIM--ATNRPDTLDP 335
Query: 118 AARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASL 175
A R RL +++ IPLP+E R EI + + D E +M+ F+GAD+ +
Sbjct: 336 ALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEF-DFEAAVKMSDGFNGADIRNC 394
Query: 176 CREASLGPVR 185
EA +R
Sbjct: 395 ATEAGFFAIR 404
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLK---TEFLISLDGASTLDDDLVLVIGATNRP 279
H+P IIF+DE+D++ +R + R ++ E L +DG L +++ ATNRP
Sbjct: 273 HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIM--ATNRP 330
Query: 280 QELDEAARR--RLVKRLYIPLPDE 301
LD A R RL +++ IPLP+E
Sbjct: 331 DTLDPALLRPGRLDRKVEIPLPNE 354
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 125/229 (54%), Gaps = 12/229 (5%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+LL GPPG GKTL+ K VA + F + L + + GE E+ VR +F A P +
Sbjct: 47 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106
Query: 61 IFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAAR 120
IF DE+D+L +RSD+E S R+ + L +DG V ++ ATNRP +D A
Sbjct: 107 IFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQ--VFIMAATNRPDIIDPAIL 164
Query: 121 R--RLVKRLYIPLPDEQARCEIVTKLLRNITN-SLTVD-DIEEV-GRMTTD-FSGADMAS 174
R RL K L++ LP R I+ + +N T L D ++E + G + D ++GAD+++
Sbjct: 165 RPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSA 224
Query: 175 LCREASLGPVRSIDLSRIDALDVR---PISIDDFRDALKTVRPSVCQAD 220
L REAS+ +R +++R + + + +S F +A K VR S+ + D
Sbjct: 225 LVREASICALRQ-EMARQKSGNEKGELKVSHKHFEEAFKKVRSSISKKD 272
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 225 PSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDE 284
P +IF DE+D+L +RSD+E S R+ + L +DG V ++ ATNRP +D
Sbjct: 104 PCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQ--VFIMAATNRPDIIDP 161
Query: 285 AARR--RLVKRLYIPLP 299
A R RL K L++ LP
Sbjct: 162 AILRPGRLDKTLFVGLP 178
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 105/187 (56%), Gaps = 8/187 (4%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+LL GPPGTGKTL+ K VA + FF + S+ + G G VR LF A PSI
Sbjct: 47 VLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSI 106
Query: 61 IFIDEIDSLLCQRSD----QENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELD 116
IFIDEID++ R+ N+ + + L +DG + ++ V+V+ ATNRP+ LD
Sbjct: 107 IFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS-ENAPVIVLAATNRPEILD 165
Query: 117 EAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMAS 174
A R R +++ + PD R EI+ ++ + + V +++EV ++T +GAD+A+
Sbjct: 166 PALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDV-NLQEVAKLTAGLAGADLAN 224
Query: 175 LCREASL 181
+ EA+L
Sbjct: 225 IINEAAL 231
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 225 PSIIFIDEIDSLLCQRSD----QENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ 280
PSIIFIDEID++ R+ N+ + + L +DG + ++ V+V+ ATNRP+
Sbjct: 104 PSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS-ENAPVIVLAATNRPE 162
Query: 281 ELDEAARR--RLVKRLYIPLPD 300
LD A R R +++ + PD
Sbjct: 163 ILDPALMRPGRFDRQVLVDKPD 184
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 104/192 (54%), Gaps = 12/192 (6%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
++L+GPPGTGKTL+ + VA F +S + L K+ GEG +MVR LF +A H PSI
Sbjct: 185 VILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSI 244
Query: 61 IFIDEIDSLLCQR---SDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDE 117
IF+DEIDS+ R S + +R E L LDG T + + +I ATNR LD
Sbjct: 245 IFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN--IKIIMATNRLDILDP 302
Query: 118 AARR--RLVKRLYIPLPDEQARCEIVTKLLR--NITNSLTVDDIEEVGRMTTDFSGADMA 173
A R R+ +++ P P AR EI+ R N+T + ++ +V SGAD+
Sbjct: 303 ALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI---NLRKVAEKMNGCSGADVK 359
Query: 174 SLCREASLGPVR 185
+C EA + +R
Sbjct: 360 GVCTEAGMYALR 371
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 223 HQPSIIFIDEIDSLLCQR---SDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRP 279
H PSIIF+DEIDS+ R S + +R E L LDG T + + +I ATNR
Sbjct: 240 HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN--IKIIMATNRL 297
Query: 280 QELDEAARR--RLVKRLYIPLP 299
LD A R R+ +++ P P
Sbjct: 298 DILDPALLRPGRIDRKIEFPPP 319
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 105/192 (54%), Gaps = 10/192 (5%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+L+ GPPGTGKTL+ K +A + K FF IS S + G G VR +F A P I
Sbjct: 48 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCI 107
Query: 61 IFIDEIDSLLCQR----SDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELD 116
IFIDEID++ QR +E + L + L+ +DG ++ ++VI ATNRP LD
Sbjct: 108 IFIDEIDAVGRQRGAGLGGGHDEREQTL-NQMLVEMDGFE--GNEGIIVIAATNRPDVLD 164
Query: 117 EAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMAS 174
A R R +++ + LPD + R +I+ +R + + + D + R T FSGAD+A+
Sbjct: 165 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI-DAAIIARGTPGFSGADLAN 223
Query: 175 LCREASLGPVRS 186
L EA+L R
Sbjct: 224 LVNEAALFAARG 235
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 9/82 (10%)
Query: 225 PSIIFIDEIDSLLCQRS----DQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ 280
P IIFIDEID++ QR +E + L + L+ +DG ++ ++VI ATNRP
Sbjct: 105 PCIIFIDEIDAVGRQRGAGLGGGHDEREQTL-NQMLVEMDGFE--GNEGIIVIAATNRPD 161
Query: 281 ELDEAARR--RLVKRLYIPLPD 300
LD A R R +++ + LPD
Sbjct: 162 VLDPALLRPGRFDRQVVVGLPD 183
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 108/195 (55%), Gaps = 16/195 (8%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
ILL+GPPGTGKTL + VA + ATF + S L K+ GEG +MVR LF +A + I
Sbjct: 246 ILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACI 305
Query: 61 IFIDEIDSLLCQRSD----QENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELD 116
IF DEID++ R D +NE R + E + LDG + + V+ ATNRP LD
Sbjct: 306 IFFDEIDAVGGARFDDGAGGDNEVQRTM-LELITQLDGFDPRGN--IKVMFATNRPNTLD 362
Query: 117 EAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD---DIEEVGRMTTDFSGAD 171
A R R+ +++ LPD + R I R + S++V+ E + R+ + +GA+
Sbjct: 363 PALLRPGRIDRKVEFSLPDLEGRANI----FRIHSKSMSVERGIRWELISRLCPNSTGAE 418
Query: 172 MASLCREASLGPVRS 186
+ S+C EA + +R+
Sbjct: 419 LRSVCTEAGMFAIRA 433
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 227 IIFIDEIDSLLCQRSD----QENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQEL 282
IIF DEID++ R D +NE R + E + LDG + + V+ ATNRP L
Sbjct: 305 IIFFDEIDAVGGARFDDGAGGDNEVQRTM-LELITQLDGFDPRGN--IKVMFATNRPNTL 361
Query: 283 DEAARR--RLVKRLYIPLPD 300
D A R R+ +++ LPD
Sbjct: 362 DPALLRPGRIDRKVEFSLPD 381
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 119/236 (50%), Gaps = 27/236 (11%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
ILL GPPGTGKTL+ + VA + FF IS S + G G VR LFA A H P I
Sbjct: 52 ILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCI 111
Query: 61 IFIDEIDSLLCQRS-------DQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ 113
+FIDEID++ R D+ +T +L L+ +DG + + ++V+ ATNRP
Sbjct: 112 VFIDEIDAVGRHRGAGLGGGHDEREQTLNQL----LVEMDGFDSKEG--IIVMAATNRPD 165
Query: 114 ELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD-DIEEVGRMTTDFSGA 170
LD A R R K++ + PD R +I+ RN L D ++E + + T F GA
Sbjct: 166 ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRN--KPLAEDVNLEIIAKRTPGFVGA 223
Query: 171 DMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRPSVCQADFVHQPS 226
D+ +L EA+L L+ + D I++ DF +A+ V + + P+
Sbjct: 224 DLENLVNEAAL-------LAAREGRD--KITMKDFEEAIDRVIAGPARKSLLISPA 270
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 16/98 (16%)
Query: 212 VRPSVCQADFVHQPSIIFIDEIDSLLCQRS-------DQENETSRRLKTEFLISLDGAST 264
VR QA H P I+FIDEID++ R D+ +T +L L+ +DG +
Sbjct: 97 VRDLFAQAK-AHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQL----LVEMDGFDS 151
Query: 265 LDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPD 300
+ ++V+ ATNRP LD A R R K++ + PD
Sbjct: 152 KEG--IIVMAATNRPDILDPALLRPGRFDKKIVVDPPD 187
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 104/190 (54%), Gaps = 8/190 (4%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
++L+G PGTGKTL+ K VA Q ATF I S L K+ G+G ++ R +F VA + PSI
Sbjct: 219 VILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSI 278
Query: 61 IFIDEIDSLLCQRSDQENETSR---RLKTEFLISLDGASTLDDDLVLVIGATNRPQELDE 117
+FIDEID++ +R D + R R E L LDG D V VI ATN+ + LD
Sbjct: 279 VFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGD--VKVIMATNKIETLDP 336
Query: 118 AARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASL 175
A R R+ +++ PD + +I+ + S V ++E + D SGAD+ ++
Sbjct: 337 ALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV-NLETLVTTKDDLSGADIQAM 395
Query: 176 CREASLGPVR 185
C EA L +R
Sbjct: 396 CTEAGLLALR 405
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 214 PSVCQADFV----HQPSIIFIDEIDSLLCQRSDQENETSR---RLKTEFLISLDGASTLD 266
P +C+ F + PSI+FIDEID++ +R D + R R E L LDG
Sbjct: 261 PRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320
Query: 267 DDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPD 300
D V VI ATN+ + LD A R R+ +++ PD
Sbjct: 321 D--VKVIMATNKIETLDPALIRPGRIDRKILFENPD 354
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 103/192 (53%), Gaps = 11/192 (5%)
Query: 2 LLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSII 61
LL GPPG GKTL+ K VA + + F ++ + G G VR+LF A P I+
Sbjct: 43 LLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIV 102
Query: 62 FIDEIDSLLCQRSDQ----ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDE 117
+IDEID++ +RS N + + L+ +DG T D V+V+ +TNR LD
Sbjct: 103 YIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH--VIVLASTNRADILDG 160
Query: 118 AARR--RLVKRLYIPLPDEQARCEIVTKLLRN--ITNSLTVDDIEEVGRMTTDFSGADMA 173
A R RL + ++I LP Q R EI + L++ +T S T + + +T FSGAD+A
Sbjct: 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYS-QRLAELTPGFSGADIA 219
Query: 174 SLCREASLGPVR 185
++C EA+L R
Sbjct: 220 NICNEAALHAAR 231
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 225 PSIIFIDEIDSLLCQRSDQ----ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ 280
P I++IDEID++ +RS N + + L+ +DG T D V+V+ +TNR
Sbjct: 99 PCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH--VIVLASTNRAD 156
Query: 281 ELDEAARR--RLVKRLYIPLPDEQK 303
LD A R RL + ++I LP Q+
Sbjct: 157 ILDGALMRPGRLDRHVFIDLPTLQE 181
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 106/191 (55%), Gaps = 9/191 (4%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+LL+GPPGTGKT++ K VA KA F ++ S K+ GEG +MVR +F +A + PSI
Sbjct: 209 VLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSI 268
Query: 61 IFIDEIDSLLCQRSDQENETSR---RLKTEFLISLDGASTLDDDLVLVIGATNRPQELDE 117
IFIDE+DS+ +R D + + R R+ E L +DG + V VI ATNR LD
Sbjct: 269 IFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTN--VKVIMATNRADTLDP 326
Query: 118 AARR--RLVKRLYIP-LPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMAS 174
A R RL +++ P L D + R I + ++ + D++ + SGA +A+
Sbjct: 327 ALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEA-DLDSLIIRNDSLSGAVIAA 385
Query: 175 LCREASLGPVR 185
+ +EA L VR
Sbjct: 386 IMQEAGLRAVR 396
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 223 HQPSIIFIDEIDSLLCQRSDQENETSR---RLKTEFLISLDGASTLDDDLVLVIGATNRP 279
+ PSIIFIDE+DS+ +R D + + R R+ E L +DG + V VI ATNR
Sbjct: 264 NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTN--VKVIMATNRA 321
Query: 280 QELDEAARR--RLVKRLYIP 297
LD A R RL +++ P
Sbjct: 322 DTLDPALLRPGRLDRKIEFP 341
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 118/236 (50%), Gaps = 27/236 (11%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
ILL GPPGTG TL+ + VA + FF IS S + G G VR LFA A H P I
Sbjct: 52 ILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCI 111
Query: 61 IFIDEIDSLLCQRS-------DQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ 113
+FIDEID++ R D+ +T +L L+ +DG + + ++V+ ATNRP
Sbjct: 112 VFIDEIDAVGRHRGAGLGGGHDEREQTLNQL----LVEMDGFDSKEG--IIVMAATNRPD 165
Query: 114 ELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD-DIEEVGRMTTDFSGA 170
LD A R R K++ + PD R +I+ RN L D ++E + + T F GA
Sbjct: 166 ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRN--KPLAEDVNLEIIAKRTPGFVGA 223
Query: 171 DMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRPSVCQADFVHQPS 226
D+ +L EA+L L+ + D I++ DF +A+ V + + P+
Sbjct: 224 DLENLVNEAAL-------LAAREGRD--KITMKDFEEAIDRVIAGPARKSLLISPA 270
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 16/98 (16%)
Query: 212 VRPSVCQADFVHQPSIIFIDEIDSLLCQRS-------DQENETSRRLKTEFLISLDGAST 264
VR QA H P I+FIDEID++ R D+ +T +L L+ +DG +
Sbjct: 97 VRDLFAQAK-AHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQL----LVEMDGFDS 151
Query: 265 LDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPD 300
+ ++V+ ATNRP LD A R R K++ + PD
Sbjct: 152 KEG--IIVMAATNRPDILDPALLRPGRFDKKIVVDPPD 187
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 88/177 (49%), Gaps = 10/177 (5%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+LL GPPG GKT + + VA + + F S S + G G VR LF A H P I
Sbjct: 52 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111
Query: 61 IFIDEIDSLLCQRS---DQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDE 117
+FIDEID++ +R N+ + + L+ +DG D ++V+ ATNRP LD
Sbjct: 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDILDP 169
Query: 118 AARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD-DIEEVGRMTTDFSGAD 171
A R R +++ I PD + R +I+ R L D D+ + + T F GAD
Sbjct: 170 ALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGAD 224
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 223 HQPSIIFIDEIDSLLCQRS---DQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRP 279
H P I+FIDEID++ +R N+ + + L+ +DG D ++V+ ATNRP
Sbjct: 107 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRP 164
Query: 280 QELDEAARR--RLVKRLYIPLPD 300
LD A R R +++ I PD
Sbjct: 165 DILDPALLRPGRFDRQIAIDAPD 187
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 88/177 (49%), Gaps = 10/177 (5%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+LL GPPG GKT + + VA + + F S S + G G VR LF A H P I
Sbjct: 76 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135
Query: 61 IFIDEIDSLLCQRS---DQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDE 117
+FIDEID++ +R N+ + + L+ +DG D ++V+ ATNRP LD
Sbjct: 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDILDP 193
Query: 118 AARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD-DIEEVGRMTTDFSGAD 171
A R R +++ I PD + R +I+ R L D D+ + + T F GAD
Sbjct: 194 ALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGAD 248
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 223 HQPSIIFIDEIDSLLCQRS---DQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRP 279
H P I+FIDEID++ +R N+ + + L+ +DG D ++V+ ATNRP
Sbjct: 131 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRP 188
Query: 280 QELDEAARR--RLVKRLYIPLPD 300
LD A R R +++ I PD
Sbjct: 189 DILDPALLRPGRFDRQIAIDAPD 211
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 88/177 (49%), Gaps = 10/177 (5%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+LL GPPG GKT + + VA + + F S S + G G VR LF A H P I
Sbjct: 76 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135
Query: 61 IFIDEIDSLLCQRS---DQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDE 117
+FIDEID++ +R N+ + + L+ +DG D ++V+ ATNRP LD
Sbjct: 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDILDP 193
Query: 118 AARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD-DIEEVGRMTTDFSGAD 171
A R R +++ I PD + R +I+ R L D D+ + + T F GAD
Sbjct: 194 ALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGAD 248
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 223 HQPSIIFIDEIDSLLCQRS---DQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRP 279
H P I+FIDEID++ +R N+ + + L+ +DG D ++V+ ATNRP
Sbjct: 131 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRP 188
Query: 280 QELDEAARR--RLVKRLYIPLPD 300
LD A R R +++ I PD
Sbjct: 189 DILDPALLRPGRFDRQIAIDAPD 211
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 88/177 (49%), Gaps = 10/177 (5%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+LL GPPG GKT + + VA + + F S S + G G VR LF A H P I
Sbjct: 67 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126
Query: 61 IFIDEIDSLLCQRSD---QENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDE 117
+FIDEID++ +R N+ + + L+ +DG D ++V+ ATNRP LD
Sbjct: 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDILDP 184
Query: 118 AARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD-DIEEVGRMTTDFSGAD 171
A R R +++ I PD + R +I+ R L D D+ + + T F GAD
Sbjct: 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGAD 239
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 223 HQPSIIFIDEIDSLLCQRSD---QENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRP 279
H P I+FIDEID++ +R N+ + + L+ +DG D ++V+ ATNRP
Sbjct: 122 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRP 179
Query: 280 QELDEAARR--RLVKRLYIPLPD 300
LD A R R +++ I PD
Sbjct: 180 DILDPALLRPGRFDRQIAIDAPD 202
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWY--GEGEKMVRALF-----AVA 53
IL+ GP G GKT I + +A A F + A+ T Y E + ++R L A+
Sbjct: 53 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAID 112
Query: 54 SVHQPSIIFIDEIDSLLCQRSD 75
+V Q I+FIDEID +C++ +
Sbjct: 113 AVEQNGIVFIDEIDK-ICKKGE 133
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWY-GEG-EKMVRALFAV----AS 54
ILL GP G+GKTL+ + +A F A+TLT Y GE E +++ L
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 55 VHQPSIIFIDEIDSLLCQRSD 75
Q I++ID+ID + ++SD
Sbjct: 114 KAQRGIVYIDQIDK-ISRKSD 133
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWY-GEG-EKMVRALFAV----AS 54
ILL GP G+GKTL+ + +A F A+TLT Y GE E +++ L
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 55 VHQPSIIFIDEIDSLLCQRSD 75
Q I++ID+ID + ++SD
Sbjct: 114 KAQRGIVYIDQIDK-ISRKSD 133
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWY-GEG-EKMVRALFAVASVH-- 56
ILL GP G+GKTL+ + +A A++LT Y GE E ++ L + +
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 57 --QPSIIFIDEIDSL 69
Q I+FIDEID +
Sbjct: 135 KAQKGIVFIDEIDKI 149
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 14/167 (8%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+LLFGPPG GKT + +A + S + E + A+ A S+ + I
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILA-NSLEEGDI 93
Query: 61 IFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAS---TLDDDLVLVIGATNRPQELDE 117
+FIDEI L Q + + +I A+ L+ +IGAT RP +
Sbjct: 94 LFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITA 153
Query: 118 A--ARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGR 162
+R +V+ L P+E A+ V + R + +T + E+GR
Sbjct: 154 PLLSRFGIVEHLEYYTPEELAQG--VMRDARLLGVRITEEAALEIGR 198
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 14/167 (8%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+LLFGPPG GKT + +A + S + E + A+ A S+ + I
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILA-NSLEEGDI 93
Query: 61 IFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAS---TLDDDLVLVIGATNRPQELDE 117
+FIDEI L Q + + +I A+ L+ +IGAT RP +
Sbjct: 94 LFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITA 153
Query: 118 A--ARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGR 162
+R +V+ L P+E A+ V + R + +T + E+GR
Sbjct: 154 PLLSRFGIVEHLEYYTPEELAQG--VMRDARLLGVRITEEAALEIGR 198
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 14/167 (8%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+LLFGPPG GKT + +A + S + E + A+ A S+ + I
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILA-NSLEEGDI 93
Query: 61 IFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAS---TLDDDLVLVIGATNRPQELDE 117
+FIDEI L Q + + +I A+ L+ +IGAT RP +
Sbjct: 94 LFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITA 153
Query: 118 A--ARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGR 162
+R +V+ L P+E A+ V + R + +T + E+GR
Sbjct: 154 PLLSRFGIVEHLEYYTPEELAQG--VMRDARLLGVRITEEAALEIGR 198
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 34/137 (24%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVA----SVH 56
++L+GPPGTGKT + + +A A ISA T G K +R A +
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISAVT-------SGVKEIREAIERARQNRNAG 105
Query: 57 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGAT--NRPQE 114
+ +I+F+DE+ +S Q+ FL ++D + IGAT N E
Sbjct: 106 RRTILFVDEVHRF--NKSQQD---------AFL------PHIEDGTITFIGATTENPSFE 148
Query: 115 LDEA----ARRRLVKRL 127
L+ A AR L+K L
Sbjct: 149 LNSALLSRARVYLLKSL 165
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 12/81 (14%)
Query: 2 LLFGPPGTGKTLIGKCVA------------AQCKATFFCISASTLTSKWYGEGEKMVRAL 49
LL G G GKT I + +A A C I + +K+ G+ EK +AL
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 50 FAVASVHQPSIIFIDEIDSLL 70
SI+FIDEI +++
Sbjct: 271 LKQLEQDTNSILFIDEIHTII 291
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+LL GPPG GKT + +A++ + S L + G+ + + S+ + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAI------LTSLERGDV 105
Query: 61 IFIDEIDSL 69
+FIDEI L
Sbjct: 106 LFIDEIHRL 114
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+LL GPPG GKT + +A++ + S L + M L S+ + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG-----DMAAIL---TSLERGDV 105
Query: 61 IFIDEIDSL 69
+FIDEI L
Sbjct: 106 LFIDEIHRL 114
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+LL GPPG GKT + +A++ + S L + M L S+ + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG-----DMAAIL---TSLERGDV 105
Query: 61 IFIDEIDSL 69
+FIDEI L
Sbjct: 106 LFIDEIHRL 114
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+LL GPPG GKT + +A++ + S L + M L S+ + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG-----DMAAIL---TSLERGDV 105
Query: 61 IFIDEIDSL 69
+FIDEI L
Sbjct: 106 LFIDEIHRL 114
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+LL GPPG GKT + +A++ + S L + M L S+ + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG-----DMAAIL---TSLERGDV 105
Query: 61 IFIDEIDSL 69
+FIDEI L
Sbjct: 106 LFIDEIHRL 114
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
Length = 444
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWY 39
IL+ GP G GKT I + +A A F + A+ T Y
Sbjct: 53 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY 91
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWY 39
IL+ GP G GKT I + +A A F + A+ T Y
Sbjct: 53 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY 91
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWY 39
IL+ GP G GKT I + +A A F + A+ T Y
Sbjct: 52 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY 90
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWY 39
IL+ GP G GKT I + +A A F + A+ T Y
Sbjct: 59 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY 97
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+LL GPPG G+T + +A++ + S L + G+ + + S+ + +
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAI------LTSLERGDV 105
Query: 61 IFIDEIDSL 69
+FIDEI L
Sbjct: 106 LFIDEIHRL 114
>pdb|3MHV|C Chain C, Crystal Structure Of Vps4 And Vta1
Length = 117
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 132 PDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSI 187
PD AR + + + LT +D +G MT +SG+D+A + ++A + P+R I
Sbjct: 3 PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 58
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWY 39
IL GP G GKT I + +A A F + A+ T Y
Sbjct: 53 ILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY 91
>pdb|2HUF|A Chain A, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase
pdb|2HUF|B Chain B, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase
pdb|2HUI|A Chain A, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase In Complex With Glyoxylic Acid
pdb|2HUI|B Chain B, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase In Complex With Glyoxylic Acid
pdb|2HUU|A Chain A, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase In Complex With Alanine
pdb|2HUU|B Chain B, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase In Complex With Alanine
Length = 393
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 41/157 (26%)
Query: 100 DDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNI--TNSLTVDDI 157
+ L++ G +N PQ + +A R ++ L+ P+ + + + +R + TN++ +
Sbjct: 19 NKLLMGPGPSNAPQRVLDAMSRPILGHLH---PETLKIMDDIKEGVRYLFQTNNIATFCL 75
Query: 158 EEVGRMTTDFSGADMASLCREASLGPV-----------RSIDLSRIDALDVRPI------ 200
G G A+LC G V RS D++ DVR +
Sbjct: 76 SASGH------GGMEATLCNLLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKVGQ 129
Query: 201 --SIDDFRDALKTVRPSVCQADFVHQPSIIFIDEIDS 235
S+D+ RDAL +H+PS++F+ + DS
Sbjct: 130 SLSLDEIRDAL-----------LIHKPSVLFLTQGDS 155
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 17/116 (14%)
Query: 2 LLFGPPGTGKTLIGKCVAAQC------------KATFFCISASTLTSKWYGEGEKMVRAL 49
+L G PG GKT I + +A + + + + +K+ GE E+ ++A+
Sbjct: 58 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 117
Query: 50 FA-VASVHQPSIIFIDEIDSLL-CQRSDQENETSRRLKTEFL---ISLDGASTLDD 100
V I+FIDE+ +++ +++ + LK + L GA+TLD+
Sbjct: 118 IQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDE 173
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 2 LLFGPPGTGKTLIGKCVAAQC------------KATFFCISASTLTSKWYGEGEKMVRAL 49
+L G PG GKT I + +A + + + A +K+ GE E+ ++ +
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV 106
Query: 50 FA-VASVHQPSIIFIDEIDSLL-CQRSDQENETSRRLKTEFL---ISLDGASTLDD 100
+A I+FIDE+ +++ ++D + LK + GA+TLD+
Sbjct: 107 LNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDE 162
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 17/116 (14%)
Query: 2 LLFGPPGTGKTLIGKCVAAQC------------KATFFCISASTLTSKWYGEGEKMVRAL 49
+L G PG GKT I + +A + + + + +K+ GE E+ ++A+
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 254
Query: 50 FA-VASVHQPSIIFIDEIDSLL-CQRSDQENETSRRLKTEFL---ISLDGASTLDD 100
V I+FIDE+ +++ +++ + LK + L GA+TLD+
Sbjct: 255 IQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDE 310
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATF-FC 28
+LL GPPGTGKT + +A + + FC
Sbjct: 66 VLLAGPPGTGKTALALAIAQELGSKVPFC 94
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATF-FC 28
+LL GPPGTGKT + +A + + FC
Sbjct: 80 VLLAGPPGTGKTALALAIAQELGSKVPFC 108
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 1 ILLFGPPGTGKTLIGKCVA 19
+LL G PGTGK+++G+ +A
Sbjct: 63 VLLIGEPGTGKSMLGQAMA 81
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 1 ILLFGPPGTGKTLI--GKCVAAQCKATFFCISASTLTSKWYGEGEKMVRAL-------FA 51
+L+ G PGTGKT I G A F I+ S + S + E + +A
Sbjct: 73 VLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIK 132
Query: 52 VASVHQPSIIFIDEIDS 68
+VH S+ ID I+S
Sbjct: 133 AGAVHTVSLHEIDVINS 149
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 3 LFGPPGTGKTLIGKCVAAQCKATFFCIS 30
L GPPG GKT + K +A F IS
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRIS 140
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 11/126 (8%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
IL GP G GKT + ++ + A +A + EK + ++ + I
Sbjct: 58 ILFSGPAGLGKTTLANIISYEXSANIKTTAAPXI--------EKSGDLAAILTNLSEGDI 109
Query: 61 IFIDEIDSLLCQRSDQENETSRRLKTEFLI-SLDGASTLDDDL--VLVIGATNRPQELDE 117
+FIDEI L + + + +I S A T+ DL +IGAT R L
Sbjct: 110 LFIDEIHRLSPAIEEVLYPAXEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGXLSN 169
Query: 118 AARRRL 123
R R
Sbjct: 170 PLRDRF 175
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGE----KMVRALFAVASVH 56
+LL GPP +GKT + +A + F I + K G E + ++ +F A
Sbjct: 66 VLLEGPPHSGKTALAAKIAEESNFPFIKICSP---DKMIGFSETAKCQAMKKIFDDAYKS 122
Query: 57 QPSIIFIDEIDSLL 70
Q S + +D+I+ LL
Sbjct: 123 QLSCVVVDDIERLL 136
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGE----KMVRALFAVASVH 56
+LL GPP +GKT + +A + F I + K G E + ++ +F A
Sbjct: 67 VLLEGPPHSGKTALAAKIAEESNFPFIKICSP---DKMIGFSETAKCQAMKKIFDDAYKS 123
Query: 57 QPSIIFIDEIDSLL 70
Q S + +D+I+ LL
Sbjct: 124 QLSCVVVDDIERLL 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,366,969
Number of Sequences: 62578
Number of extensions: 361612
Number of successful extensions: 1198
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 974
Number of HSP's gapped (non-prelim): 135
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)