Query psy4538
Match_columns 343
No_of_seqs 295 out of 2841
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 19:41:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4538.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4538hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733|consensus 100.0 2E-71 4.4E-76 509.6 23.9 318 1-342 226-703 (802)
2 KOG0730|consensus 100.0 4.6E-61 9.9E-66 447.0 22.9 315 1-342 221-624 (693)
3 KOG0736|consensus 100.0 7.9E-57 1.7E-61 422.8 22.6 318 1-342 434-866 (953)
4 KOG0735|consensus 100.0 3.3E-54 7.2E-59 401.8 22.2 318 1-341 434-856 (952)
5 TIGR01243 CDC48 AAA family ATP 100.0 5E-48 1.1E-52 386.8 26.8 299 1-304 215-627 (733)
6 COG1222 RPT1 ATP-dependent 26S 100.0 8.6E-39 1.9E-43 279.3 18.0 202 1-214 188-394 (406)
7 KOG0738|consensus 100.0 6.5E-39 1.4E-43 281.8 17.0 220 1-221 248-478 (491)
8 KOG0730|consensus 100.0 8.4E-39 1.8E-43 298.4 16.8 210 1-220 471-682 (693)
9 KOG0733|consensus 100.0 1.4E-38 3.1E-43 293.3 17.7 218 1-220 548-777 (802)
10 COG0464 SpoVK ATPases of the A 100.0 8.7E-38 1.9E-42 301.1 23.9 297 1-304 21-415 (494)
11 KOG0739|consensus 100.0 1.1E-37 2.5E-42 265.3 12.8 220 1-221 169-425 (439)
12 KOG0734|consensus 100.0 4E-35 8.6E-40 266.8 15.9 201 1-213 340-542 (752)
13 KOG0736|consensus 100.0 9.9E-35 2.1E-39 274.1 17.5 220 1-221 708-941 (953)
14 KOG0737|consensus 100.0 1.6E-34 3.5E-39 253.9 16.7 214 1-215 130-362 (386)
15 COG1223 Predicted ATPase (AAA+ 100.0 1.7E-34 3.8E-39 241.7 15.6 203 1-215 154-358 (368)
16 KOG0740|consensus 100.0 2.5E-33 5.5E-38 254.9 17.8 220 1-220 189-412 (428)
17 CHL00195 ycf46 Ycf46; Provisio 100.0 7.3E-33 1.6E-37 261.5 20.8 202 1-216 262-467 (489)
18 COG0464 SpoVK ATPases of the A 100.0 8.1E-32 1.8E-36 259.6 19.9 207 1-217 279-488 (494)
19 COG0465 HflB ATP-dependent Zn 100.0 1E-31 2.2E-36 254.1 17.8 311 1-324 186-550 (596)
20 KOG0735|consensus 100.0 1.5E-31 3.2E-36 250.7 17.4 184 1-187 704-889 (952)
21 KOG0731|consensus 100.0 1.3E-31 2.7E-36 257.6 17.3 308 1-323 347-707 (774)
22 PTZ00454 26S protease regulato 100.0 5.6E-31 1.2E-35 243.8 20.1 202 1-214 182-388 (398)
23 TIGR01243 CDC48 AAA family ATP 100.0 3.8E-31 8.2E-36 265.2 20.2 217 1-220 490-718 (733)
24 PRK03992 proteasome-activating 100.0 1.1E-30 2.3E-35 243.1 20.9 207 1-219 168-379 (389)
25 KOG0741|consensus 100.0 4E-31 8.7E-36 240.6 12.8 295 1-299 259-672 (744)
26 KOG0727|consensus 100.0 1.8E-30 4E-35 216.9 14.0 201 1-213 192-397 (408)
27 CHL00176 ftsH cell division pr 100.0 1.4E-29 3.1E-34 246.2 21.5 200 1-212 219-423 (638)
28 TIGR01241 FtsH_fam ATP-depende 100.0 9.8E-30 2.1E-34 244.5 18.8 202 1-214 91-297 (495)
29 KOG0728|consensus 100.0 6.6E-30 1.4E-34 213.3 15.1 205 1-217 184-393 (404)
30 KOG0652|consensus 100.0 3.7E-30 8E-35 216.0 13.2 201 1-213 208-413 (424)
31 PTZ00361 26 proteosome regulat 100.0 1.8E-29 3.8E-34 235.2 18.7 201 1-213 220-425 (438)
32 PRK10733 hflB ATP-dependent me 100.0 1.2E-28 2.6E-33 242.4 20.7 203 1-215 188-395 (644)
33 CHL00206 ycf2 Ycf2; Provisiona 100.0 7.4E-29 1.6E-33 254.1 18.0 198 1-213 1633-1878(2281)
34 TIGR01242 26Sp45 26S proteasom 100.0 1.1E-27 2.3E-32 222.2 19.5 200 1-212 159-363 (364)
35 PLN00020 ribulose bisphosphate 100.0 2E-27 4.4E-32 211.4 18.1 163 1-167 151-331 (413)
36 KOG0726|consensus 100.0 1.2E-28 2.6E-33 209.8 7.9 201 1-213 222-427 (440)
37 KOG0729|consensus 99.9 9.6E-28 2.1E-32 202.1 11.3 201 1-213 214-419 (435)
38 KOG0732|consensus 99.9 2.2E-27 4.8E-32 234.1 13.8 298 1-302 302-685 (1080)
39 TIGR03689 pup_AAA proteasome A 99.9 4.1E-26 9E-31 215.4 19.8 203 1-211 219-477 (512)
40 COG1222 RPT1 ATP-dependent 26S 99.9 9.3E-28 2E-32 210.3 6.5 97 223-342 243-344 (406)
41 CHL00195 ycf46 Ycf46; Provisio 99.9 3.2E-25 6.9E-30 209.7 22.2 271 15-304 32-397 (489)
42 KOG0651|consensus 99.9 2.1E-26 4.6E-31 197.7 10.8 200 1-212 169-373 (388)
43 TIGR02639 ClpA ATP-dependent C 99.9 2.3E-23 5.1E-28 208.6 22.7 171 1-180 206-402 (731)
44 PRK11034 clpA ATP-dependent Cl 99.9 5.7E-23 1.2E-27 203.5 23.3 171 1-181 210-407 (758)
45 KOG0734|consensus 99.9 9.8E-25 2.1E-29 199.3 7.0 96 224-342 396-493 (752)
46 PF00004 AAA: ATPase family as 99.9 8.5E-22 1.8E-26 156.3 14.5 130 1-131 1-132 (132)
47 KOG0742|consensus 99.9 1.2E-20 2.5E-25 168.0 16.7 174 1-179 387-588 (630)
48 KOG0738|consensus 99.9 5E-22 1.1E-26 175.7 7.9 81 224-304 304-387 (491)
49 KOG0744|consensus 99.9 1E-20 2.2E-25 163.8 13.8 197 1-210 180-412 (423)
50 CHL00181 cbbX CbbX; Provisiona 99.8 5E-20 1.1E-24 164.3 16.5 178 1-187 62-258 (287)
51 CHL00095 clpC Clp protease ATP 99.8 1.2E-19 2.6E-24 183.9 21.4 159 1-169 203-382 (821)
52 TIGR02881 spore_V_K stage V sp 99.8 4.8E-20 1E-24 163.3 16.3 174 1-184 45-239 (261)
53 KOG0727|consensus 99.8 2E-21 4.2E-26 162.9 6.0 82 223-306 247-333 (408)
54 TIGR02880 cbbX_cfxQ probable R 99.8 1E-19 2.2E-24 162.6 16.3 198 1-207 61-280 (284)
55 KOG0739|consensus 99.8 7.8E-21 1.7E-25 162.8 7.8 81 223-304 224-304 (439)
56 PLN00020 ribulose bisphosphate 99.8 6.1E-21 1.3E-25 170.2 5.3 79 224-304 212-303 (413)
57 TIGR03345 VI_ClpV1 type VI sec 99.8 1.2E-18 2.5E-23 176.1 22.3 158 1-168 211-390 (852)
58 COG0465 HflB ATP-dependent Zn 99.8 1.4E-20 3.1E-25 178.6 7.4 80 223-304 241-325 (596)
59 KOG0652|consensus 99.8 1.9E-20 4E-25 157.8 7.1 79 224-304 264-347 (424)
60 KOG0731|consensus 99.8 3.8E-20 8.2E-25 178.8 8.3 79 224-304 403-487 (774)
61 PF05496 RuvB_N: Holliday junc 99.8 2.1E-19 4.6E-24 150.6 11.6 162 1-182 53-228 (233)
62 COG1223 Predicted ATPase (AAA+ 99.8 2.9E-20 6.4E-25 156.5 6.5 110 223-337 209-319 (368)
63 TIGR03346 chaperone_ClpB ATP-d 99.8 3.3E-18 7.2E-23 174.0 22.6 158 1-168 197-376 (852)
64 KOG0728|consensus 99.8 2.8E-20 6E-25 155.9 5.4 80 223-304 239-323 (404)
65 PRK00080 ruvB Holliday junctio 99.8 2.8E-17 6.2E-22 150.4 18.6 185 1-214 54-252 (328)
66 PRK00149 dnaA chromosomal repl 99.8 1.4E-17 3.1E-22 158.7 15.9 240 1-263 151-404 (450)
67 COG2256 MGS1 ATPase related to 99.8 5.2E-17 1.1E-21 145.3 18.2 266 1-318 51-351 (436)
68 COG2255 RuvB Holliday junction 99.8 3.6E-17 7.7E-22 139.9 15.9 160 1-180 55-228 (332)
69 TIGR00362 DnaA chromosomal rep 99.7 2.4E-17 5.2E-22 155.3 15.5 239 1-263 139-392 (405)
70 KOG0729|consensus 99.7 1.8E-18 3.9E-23 146.3 6.7 79 224-304 270-353 (435)
71 TIGR00635 ruvB Holliday juncti 99.7 8.8E-17 1.9E-21 146.0 18.3 182 1-211 33-228 (305)
72 PRK14086 dnaA chromosomal repl 99.7 3.6E-17 7.8E-22 156.7 16.1 240 1-263 317-571 (617)
73 KOG0741|consensus 99.7 1E-18 2.2E-23 160.1 4.5 77 226-304 326-406 (744)
74 KOG0743|consensus 99.7 2.5E-17 5.4E-22 149.7 13.2 165 2-176 239-413 (457)
75 PTZ00454 26S protease regulato 99.7 3.1E-18 6.7E-23 159.0 6.8 80 223-304 237-321 (398)
76 PRK14088 dnaA chromosomal repl 99.7 1.2E-16 2.6E-21 151.1 16.1 240 1-263 133-389 (440)
77 KOG0726|consensus 99.7 5.1E-18 1.1E-22 145.2 5.9 78 223-302 277-359 (440)
78 KOG0651|consensus 99.7 4.4E-18 9.6E-23 146.8 5.1 80 224-305 225-309 (388)
79 KOG0737|consensus 99.7 1.3E-17 2.9E-22 147.4 7.0 81 224-304 186-266 (386)
80 COG0542 clpA ATP-binding subun 99.7 5.2E-16 1.1E-20 151.5 18.2 156 2-167 195-372 (786)
81 TIGR03689 pup_AAA proteasome A 99.7 7.5E-18 1.6E-22 159.6 5.1 78 224-303 289-369 (512)
82 PRK14956 DNA polymerase III su 99.7 1E-15 2.2E-20 143.2 18.8 157 1-180 43-227 (484)
83 TIGR00763 lon ATP-dependent pr 99.7 1.3E-16 2.9E-21 160.9 13.8 174 1-183 350-554 (775)
84 PRK12422 chromosomal replicati 99.7 3.4E-16 7.3E-21 147.6 15.7 242 1-263 144-399 (445)
85 PRK06893 DNA replication initi 99.7 1.3E-15 2.9E-20 132.1 17.3 178 1-209 42-227 (229)
86 TIGR01241 FtsH_fam ATP-depende 99.7 2.3E-17 5E-22 158.9 6.5 80 223-304 146-230 (495)
87 PRK10733 hflB ATP-dependent me 99.7 3E-17 6.4E-22 162.0 6.8 80 223-304 243-327 (644)
88 PRK14087 dnaA chromosomal repl 99.7 1.2E-15 2.7E-20 144.3 16.9 241 1-263 144-403 (450)
89 PRK07003 DNA polymerase III su 99.7 1.9E-15 4.1E-20 146.7 18.0 158 1-181 41-226 (830)
90 PRK14962 DNA polymerase III su 99.7 3.9E-15 8.4E-20 141.2 19.0 176 1-212 39-242 (472)
91 PRK12323 DNA polymerase III su 99.7 2E-15 4.3E-20 144.7 16.9 158 1-181 41-231 (700)
92 KOG0732|consensus 99.7 4.6E-17 1E-21 161.7 5.7 78 224-303 363-442 (1080)
93 PRK03992 proteasome-activating 99.7 8.2E-17 1.8E-21 150.1 7.2 80 223-304 223-307 (389)
94 PTZ00361 26 proteosome regulat 99.7 5.7E-17 1.2E-21 151.5 4.4 80 223-304 275-359 (438)
95 KOG0989|consensus 99.7 2.3E-15 4.9E-20 130.2 13.8 160 1-180 60-235 (346)
96 PRK04195 replication factor C 99.6 7.8E-15 1.7E-19 140.9 18.7 156 1-180 42-204 (482)
97 PRK14960 DNA polymerase III su 99.6 9.1E-15 2E-19 140.5 18.8 158 1-181 40-225 (702)
98 KOG0740|consensus 99.6 7.8E-17 1.7E-21 147.5 4.5 81 224-304 245-325 (428)
99 COG0593 DnaA ATPase involved i 99.6 5.6E-15 1.2E-19 135.4 16.3 232 1-263 116-367 (408)
100 COG0466 Lon ATP-dependent Lon 99.6 2.1E-15 4.6E-20 143.6 13.7 173 1-182 353-560 (782)
101 TIGR02902 spore_lonB ATP-depen 99.6 3.9E-15 8.5E-20 143.9 15.8 187 1-210 89-330 (531)
102 PRK13342 recombination factor 99.6 2.1E-14 4.5E-19 135.5 20.0 172 1-212 39-219 (413)
103 TIGR02928 orc1/cdc6 family rep 99.6 1.3E-14 2.9E-19 135.0 18.3 196 1-215 43-277 (365)
104 PRK08727 hypothetical protein; 99.6 9.6E-15 2.1E-19 127.0 16.1 179 1-211 44-230 (233)
105 PRK06645 DNA polymerase III su 99.6 2E-14 4.2E-19 137.0 19.2 159 1-182 46-236 (507)
106 PRK08084 DNA replication initi 99.6 2.3E-14 5.1E-19 124.8 18.2 178 1-209 48-233 (235)
107 PLN03025 replication factor C 99.6 1.1E-14 2.4E-19 132.8 16.9 154 1-177 37-202 (319)
108 PF00308 Bac_DnaA: Bacterial d 99.6 5E-15 1.1E-19 127.4 13.6 165 1-179 37-212 (219)
109 PRK14958 DNA polymerase III su 99.6 1.3E-14 2.8E-19 139.1 17.5 159 1-182 41-227 (509)
110 PRK07994 DNA polymerase III su 99.6 1.9E-14 4.2E-19 139.9 18.7 157 1-180 41-225 (647)
111 PRK14961 DNA polymerase III su 99.6 2.2E-14 4.7E-19 133.0 18.1 175 1-211 41-243 (363)
112 PRK14949 DNA polymerase III su 99.6 2.6E-14 5.6E-19 141.3 19.4 157 1-180 41-225 (944)
113 CHL00206 ycf2 Ycf2; Provisiona 99.6 3.5E-16 7.6E-21 162.1 6.5 77 223-305 1731-1810(2281)
114 PRK00411 cdc6 cell division co 99.6 1.3E-14 2.9E-19 136.5 16.5 198 1-217 58-287 (394)
115 TIGR03420 DnaA_homol_Hda DnaA 99.6 8.8E-15 1.9E-19 127.0 14.1 177 1-209 41-225 (226)
116 PRK10865 protein disaggregatio 99.6 6.4E-15 1.4E-19 149.6 15.1 157 1-167 202-380 (857)
117 PRK06620 hypothetical protein; 99.6 2.3E-14 4.9E-19 122.7 16.2 163 1-209 47-213 (214)
118 PTZ00112 origin recognition co 99.6 8.8E-15 1.9E-19 142.9 14.5 189 2-215 785-1009(1164)
119 PRK14964 DNA polymerase III su 99.6 4.9E-14 1.1E-18 133.3 18.6 160 1-183 38-225 (491)
120 PRK08903 DnaA regulatory inact 99.6 2.2E-14 4.8E-19 124.6 15.0 173 1-210 45-224 (227)
121 KOG2004|consensus 99.6 7.8E-15 1.7E-19 139.2 12.9 175 1-184 441-650 (906)
122 PRK05642 DNA replication initi 99.6 2.1E-14 4.6E-19 124.9 14.8 177 1-209 48-232 (234)
123 CHL00176 ftsH cell division pr 99.6 7E-16 1.5E-20 150.8 5.5 80 223-304 274-358 (638)
124 PRK13341 recombination factor 99.6 2E-14 4.3E-19 142.4 15.4 257 1-302 55-333 (725)
125 PRK14963 DNA polymerase III su 99.6 1.1E-13 2.3E-18 132.5 19.9 157 1-180 39-222 (504)
126 PRK14951 DNA polymerase III su 99.6 7E-14 1.5E-18 135.7 18.3 159 1-182 41-232 (618)
127 PRK14957 DNA polymerase III su 99.6 1.2E-13 2.5E-18 132.5 19.6 158 1-181 41-226 (546)
128 PRK08691 DNA polymerase III su 99.6 7E-14 1.5E-18 135.6 17.6 159 1-182 41-227 (709)
129 KOG2028|consensus 99.6 8.1E-14 1.7E-18 123.1 16.3 181 1-212 165-368 (554)
130 PRK12402 replication factor C 99.6 1E-13 2.2E-18 127.7 17.7 181 1-212 39-249 (337)
131 PRK14952 DNA polymerase III su 99.6 3E-13 6.5E-18 130.9 20.2 159 1-182 38-226 (584)
132 PRK14969 DNA polymerase III su 99.6 9.8E-14 2.1E-18 133.8 16.6 159 1-182 41-227 (527)
133 PRK14959 DNA polymerase III su 99.6 2.2E-13 4.8E-18 131.5 18.9 156 1-179 41-224 (624)
134 PRK05563 DNA polymerase III su 99.6 2.4E-13 5.2E-18 132.1 18.3 158 1-181 41-226 (559)
135 PHA02544 44 clamp loader, smal 99.5 2.5E-13 5.5E-18 124.0 17.3 147 2-166 47-201 (316)
136 TIGR01242 26Sp45 26S proteasom 99.5 5.8E-15 1.3E-19 137.1 6.5 80 223-304 214-298 (364)
137 TIGR02397 dnaX_nterm DNA polym 99.5 3.6E-13 7.8E-18 125.0 18.3 174 1-210 39-240 (355)
138 PRK07764 DNA polymerase III su 99.5 3.7E-13 8E-18 135.0 19.5 157 1-180 40-226 (824)
139 PRK09087 hypothetical protein; 99.5 2.3E-13 5E-18 117.5 15.7 171 1-212 47-222 (226)
140 PRK05896 DNA polymerase III su 99.5 4.3E-13 9.2E-18 128.9 18.3 157 1-180 41-225 (605)
141 PRK14953 DNA polymerase III su 99.5 6.2E-13 1.3E-17 126.8 18.8 159 1-182 41-227 (486)
142 PRK07133 DNA polymerase III su 99.5 8.6E-13 1.9E-17 129.2 19.2 163 1-180 43-224 (725)
143 PRK05342 clpX ATP-dependent pr 99.5 4.6E-13 9.9E-18 124.9 16.6 186 1-186 111-381 (412)
144 PRK06647 DNA polymerase III su 99.5 1E-12 2.3E-17 127.2 19.2 158 1-181 41-226 (563)
145 PRK14965 DNA polymerase III su 99.5 6.6E-13 1.4E-17 129.6 17.4 159 1-182 41-227 (576)
146 TIGR02640 gas_vesic_GvpN gas v 99.5 1.6E-12 3.4E-17 115.2 17.8 132 1-145 24-198 (262)
147 PRK09111 DNA polymerase III su 99.5 1.6E-12 3.5E-17 126.5 19.1 165 1-182 49-240 (598)
148 PRK10787 DNA-binding ATP-depen 99.5 2.2E-13 4.8E-18 136.6 13.2 198 1-210 352-580 (784)
149 PRK14970 DNA polymerase III su 99.5 1.6E-12 3.5E-17 121.1 18.2 164 1-182 42-216 (367)
150 COG1474 CDC6 Cdc6-related prot 99.5 7.4E-13 1.6E-17 121.8 15.4 196 1-217 45-270 (366)
151 PRK08451 DNA polymerase III su 99.5 2E-12 4.3E-17 123.5 18.3 160 1-183 39-226 (535)
152 TIGR00390 hslU ATP-dependent p 99.5 5.3E-13 1.1E-17 122.3 13.3 123 57-179 247-400 (441)
153 TIGR00382 clpX endopeptidase C 99.5 1.4E-12 3.1E-17 121.0 15.9 186 1-186 119-387 (413)
154 PRK00440 rfc replication facto 99.5 3.7E-12 8.1E-17 116.4 18.3 181 1-214 41-228 (319)
155 PF05673 DUF815: Protein of un 99.5 4.1E-12 8.8E-17 108.3 16.8 159 1-178 55-244 (249)
156 PRK14955 DNA polymerase III su 99.5 2.6E-12 5.7E-17 120.4 17.2 185 1-210 41-255 (397)
157 KOG1969|consensus 99.5 1.5E-12 3.4E-17 124.2 15.4 165 1-184 329-516 (877)
158 PRK06305 DNA polymerase III su 99.5 4.9E-12 1.1E-16 120.0 18.8 157 1-180 42-227 (451)
159 PRK05201 hslU ATP-dependent pr 99.4 7.1E-13 1.5E-17 121.6 12.0 123 57-179 249-402 (443)
160 PRK04132 replication factor C 99.4 5.5E-12 1.2E-16 125.9 18.6 154 3-179 569-735 (846)
161 PRK07940 DNA polymerase III su 99.4 2.1E-12 4.6E-17 119.9 14.6 147 1-173 39-212 (394)
162 PRK14948 DNA polymerase III su 99.4 4.6E-12 9.9E-17 124.1 17.6 156 1-179 41-226 (620)
163 COG2812 DnaX DNA polymerase II 99.4 1.4E-12 3E-17 123.1 13.4 165 2-183 42-228 (515)
164 PRK14954 DNA polymerase III su 99.4 1E-11 2.2E-16 121.1 19.7 165 1-182 41-235 (620)
165 PRK11034 clpA ATP-dependent Cl 99.4 4.6E-12 9.9E-17 126.4 16.5 168 1-179 491-711 (758)
166 TIGR02903 spore_lon_C ATP-depe 99.4 6.4E-12 1.4E-16 123.5 17.2 198 1-213 178-431 (615)
167 PRK14950 DNA polymerase III su 99.4 1E-11 2.2E-16 121.8 18.4 157 1-180 41-226 (585)
168 TIGR01650 PD_CobS cobaltochela 99.4 4.1E-12 8.9E-17 113.7 13.1 137 1-146 67-234 (327)
169 PF00004 AAA: ATPase family as 99.4 8.5E-13 1.8E-17 104.3 7.1 74 224-298 58-132 (132)
170 TIGR00678 holB DNA polymerase 99.4 1E-11 2.2E-16 104.7 13.6 139 1-166 17-183 (188)
171 TIGR02639 ClpA ATP-dependent C 99.4 1.7E-11 3.6E-16 123.5 16.9 169 1-182 487-710 (731)
172 TIGR03015 pepcterm_ATPase puta 99.4 2.8E-11 6E-16 107.9 16.3 190 1-212 46-266 (269)
173 PRK14971 DNA polymerase III su 99.4 4.3E-11 9.3E-16 117.3 18.3 158 1-181 42-228 (614)
174 cd00009 AAA The AAA+ (ATPases 99.3 1.1E-11 2.4E-16 99.4 11.2 119 1-130 22-150 (151)
175 KOG0991|consensus 99.3 1.8E-11 4E-16 102.2 11.0 155 1-178 51-214 (333)
176 COG1224 TIP49 DNA helicase TIP 99.3 1.4E-10 3E-15 102.7 16.5 89 112-210 342-430 (450)
177 PF05621 TniB: Bacterial TniB 99.3 7.7E-11 1.7E-15 103.7 14.5 195 1-215 64-291 (302)
178 PRK05707 DNA polymerase III su 99.3 1.6E-10 3.4E-15 105.1 15.3 143 1-166 25-195 (328)
179 PRK13407 bchI magnesium chelat 99.3 5E-11 1.1E-15 108.2 11.9 77 58-145 129-216 (334)
180 COG2607 Predicted ATPase (AAA+ 99.3 4.4E-10 9.4E-15 94.5 16.1 160 1-179 88-277 (287)
181 TIGR03346 chaperone_ClpB ATP-d 99.3 2.2E-10 4.7E-15 117.2 17.3 170 1-183 598-825 (852)
182 KOG2035|consensus 99.2 6E-10 1.3E-14 95.5 16.8 145 1-166 37-220 (351)
183 KOG0743|consensus 99.2 1.1E-11 2.4E-16 113.2 5.8 110 224-333 286-418 (457)
184 PHA02244 ATPase-like protein 99.2 8.5E-11 1.8E-15 106.4 11.4 123 1-136 122-265 (383)
185 PRK09112 DNA polymerase III su 99.2 5E-10 1.1E-14 102.8 16.2 159 1-178 48-243 (351)
186 PRK10865 protein disaggregatio 99.2 3.8E-10 8.3E-15 115.0 16.6 168 1-181 601-826 (857)
187 TIGR03345 VI_ClpV1 type VI sec 99.2 2.5E-10 5.4E-15 116.1 15.1 166 1-180 599-827 (852)
188 PF07728 AAA_5: AAA domain (dy 99.2 5.5E-11 1.2E-15 95.1 7.8 111 1-123 2-139 (139)
189 CHL00095 clpC Clp protease ATP 99.2 4.5E-10 9.7E-15 114.6 15.8 166 1-179 542-777 (821)
190 COG0470 HolB ATPase involved i 99.2 1.4E-10 3.1E-15 106.1 10.7 123 1-141 27-177 (325)
191 smart00382 AAA ATPases associa 99.2 9.9E-11 2.1E-15 93.0 8.5 125 1-132 5-147 (148)
192 COG0714 MoxR-like ATPases [Gen 99.2 1.7E-10 3.6E-15 105.8 10.3 133 1-144 46-202 (329)
193 TIGR02974 phageshock_pspF psp 99.2 7.5E-10 1.6E-14 101.1 14.4 165 1-183 25-233 (329)
194 TIGR02030 BchI-ChlI magnesium 99.2 5.9E-10 1.3E-14 101.4 13.7 77 57-144 131-218 (337)
195 PF07724 AAA_2: AAA domain (Cd 99.2 8E-11 1.7E-15 97.1 7.2 113 1-115 6-133 (171)
196 KOG0742|consensus 99.1 4.6E-11 1E-15 107.3 5.4 109 225-341 444-560 (630)
197 KOG1514|consensus 99.1 9.8E-10 2.1E-14 105.1 14.4 200 1-215 425-658 (767)
198 PRK05564 DNA polymerase III su 99.1 1.5E-09 3.2E-14 98.9 14.8 143 1-167 29-183 (313)
199 TIGR02031 BchD-ChlD magnesium 99.1 2E-09 4.3E-14 105.5 15.7 132 1-145 19-174 (589)
200 PRK11331 5-methylcytosine-spec 99.1 7.5E-10 1.6E-14 103.0 11.8 120 1-131 197-357 (459)
201 CHL00081 chlI Mg-protoporyphyr 99.1 2.8E-09 6.1E-14 97.1 15.3 77 58-145 145-232 (350)
202 TIGR02442 Cob-chelat-sub cobal 99.1 8.2E-10 1.8E-14 109.4 12.7 132 1-145 28-214 (633)
203 PF06068 TIP49: TIP49 C-termin 99.1 2.7E-09 6E-14 95.9 14.7 105 58-179 279-395 (398)
204 PRK11608 pspF phage shock prot 99.1 3.3E-09 7.2E-14 96.9 15.7 168 1-183 32-240 (326)
205 PRK07993 DNA polymerase III su 99.1 3.5E-09 7.7E-14 96.6 14.8 143 1-167 27-197 (334)
206 PRK06871 DNA polymerase III su 99.1 4.8E-09 1E-13 94.9 15.2 141 1-166 27-195 (325)
207 PRK07471 DNA polymerase III su 99.1 3.8E-09 8.3E-14 97.5 14.6 155 1-176 44-239 (365)
208 TIGR01817 nifA Nif-specific re 99.1 2.8E-09 6.1E-14 104.1 14.5 166 1-183 222-428 (534)
209 COG0542 clpA ATP-binding subun 99.1 2E-09 4.3E-14 105.9 13.3 165 1-179 524-750 (786)
210 smart00350 MCM minichromosome 99.1 1.4E-09 3E-14 105.2 11.9 133 1-146 239-401 (509)
211 COG1219 ClpX ATP-dependent pro 99.1 1.1E-09 2.5E-14 95.6 9.9 95 1-95 100-203 (408)
212 PRK11388 DNA-binding transcrip 99.0 6E-09 1.3E-13 104.0 16.2 179 1-209 351-568 (638)
213 PRK13531 regulatory ATPase Rav 99.0 4.4E-09 9.6E-14 98.7 14.1 132 1-144 42-193 (498)
214 PRK06964 DNA polymerase III su 99.0 3.3E-09 7.3E-14 96.6 12.0 127 1-143 24-202 (342)
215 PRK08058 DNA polymerase III su 99.0 7.6E-09 1.7E-13 94.6 14.4 146 1-175 31-204 (329)
216 PRK08769 DNA polymerase III su 99.0 8.5E-09 1.8E-13 93.1 14.0 146 1-168 29-202 (319)
217 KOG2227|consensus 99.0 1.2E-08 2.6E-13 93.6 14.3 200 1-213 178-416 (529)
218 TIGR00368 Mg chelatase-related 99.0 1E-08 2.2E-13 98.2 13.5 68 57-135 295-394 (499)
219 PRK15424 propionate catabolism 99.0 2.1E-08 4.6E-13 96.7 15.7 167 1-182 245-464 (538)
220 TIGR00764 lon_rel lon-related 99.0 2E-08 4.4E-13 98.7 15.8 101 102-211 268-390 (608)
221 PRK05022 anaerobic nitric oxid 99.0 2.7E-08 5.9E-13 96.5 16.4 170 1-185 213-422 (509)
222 COG1221 PspF Transcriptional r 99.0 3.5E-09 7.7E-14 97.2 9.7 171 1-185 104-311 (403)
223 PRK15429 formate hydrogenlyase 99.0 1.4E-08 3.1E-13 102.0 14.9 167 1-183 402-609 (686)
224 TIGR00602 rad24 checkpoint pro 99.0 1.6E-08 3.4E-13 99.0 14.7 165 1-181 113-326 (637)
225 PRK08116 hypothetical protein; 98.9 4.4E-09 9.5E-14 93.3 9.4 126 1-142 117-257 (268)
226 KOG0745|consensus 98.9 5.8E-09 1.3E-13 94.7 10.1 133 1-134 229-388 (564)
227 PRK10820 DNA-binding transcrip 98.9 2.3E-08 5E-13 97.0 15.0 168 1-183 230-437 (520)
228 PF13177 DNA_pol3_delta2: DNA 98.9 1E-08 2.3E-13 84.0 10.7 113 1-132 22-161 (162)
229 KOG0990|consensus 98.9 4.9E-09 1.1E-13 91.8 9.1 156 1-179 65-233 (360)
230 PF07726 AAA_3: ATPase family 98.9 9E-10 2E-14 84.6 4.0 110 1-124 2-130 (131)
231 KOG1942|consensus 98.9 2.7E-08 5.8E-13 86.2 13.0 89 112-210 348-436 (456)
232 PRK06090 DNA polymerase III su 98.9 1.8E-08 3.9E-13 90.9 12.5 124 1-143 28-178 (319)
233 COG2204 AtoC Response regulato 98.9 1.5E-08 3.3E-13 94.7 12.4 170 1-185 167-376 (464)
234 TIGR02329 propionate_PrpR prop 98.9 3.5E-08 7.6E-13 95.2 14.6 168 1-183 238-450 (526)
235 COG3829 RocR Transcriptional r 98.9 1.1E-08 2.3E-13 96.0 10.4 167 1-183 271-479 (560)
236 PRK07399 DNA polymerase III su 98.9 3.5E-08 7.6E-13 89.4 13.4 156 1-177 29-223 (314)
237 COG1220 HslU ATP-dependent pro 98.9 2.3E-08 5E-13 88.2 11.1 86 57-142 250-346 (444)
238 PRK08699 DNA polymerase III su 98.8 2.4E-08 5.2E-13 90.8 11.1 127 1-143 24-183 (325)
239 TIGR02915 PEP_resp_reg putativ 98.8 7E-08 1.5E-12 92.4 14.2 165 1-183 165-372 (445)
240 PF13173 AAA_14: AAA domain 98.8 4.7E-08 1E-12 76.9 9.8 67 1-69 5-73 (128)
241 KOG2680|consensus 98.8 1.3E-07 2.7E-12 82.3 13.0 89 112-210 339-427 (454)
242 PF00158 Sigma54_activat: Sigm 98.8 7.4E-08 1.6E-12 79.3 11.1 105 1-121 25-151 (168)
243 KOG0744|consensus 98.8 3.6E-09 7.8E-14 92.7 3.3 75 227-303 253-331 (423)
244 PRK12377 putative replication 98.8 3.7E-08 8E-13 85.9 9.5 67 1-69 104-175 (248)
245 PRK11361 acetoacetate metaboli 98.8 1.1E-07 2.3E-12 91.4 13.6 165 1-183 169-376 (457)
246 PTZ00111 DNA replication licen 98.8 1.1E-07 2.4E-12 95.3 13.8 131 1-145 495-657 (915)
247 COG3604 FhlA Transcriptional r 98.8 3.6E-08 7.8E-13 91.4 9.1 169 1-183 249-456 (550)
248 PF03215 Rad17: Rad17 cell cyc 98.8 1.3E-07 2.9E-12 90.8 13.4 169 1-184 48-269 (519)
249 PRK09862 putative ATP-dependen 98.8 1.4E-07 3.1E-12 90.1 13.4 120 1-134 213-390 (506)
250 PRK10923 glnG nitrogen regulat 98.8 7.4E-08 1.6E-12 92.8 11.7 166 1-183 164-371 (469)
251 PRK08181 transposase; Validate 98.7 2.9E-08 6.4E-13 87.6 8.1 68 1-70 109-180 (269)
252 PF01637 Arch_ATPase: Archaeal 98.7 7.4E-08 1.6E-12 83.5 10.3 163 1-173 23-232 (234)
253 PRK06835 DNA replication prote 98.7 4.4E-08 9.5E-13 89.1 8.1 67 1-69 186-258 (329)
254 TIGR01818 ntrC nitrogen regula 98.7 4.6E-07 1E-11 87.2 15.4 180 1-209 160-381 (463)
255 PF05729 NACHT: NACHT domain 98.7 2.2E-07 4.8E-12 76.1 11.0 139 1-147 3-165 (166)
256 PRK15115 response regulator Gl 98.7 3.2E-07 7E-12 87.8 13.7 163 1-183 160-367 (444)
257 COG1239 ChlI Mg-chelatase subu 98.7 3.4E-07 7.3E-12 83.7 12.8 80 57-147 144-234 (423)
258 PRK07952 DNA replication prote 98.7 1.2E-07 2.6E-12 82.5 9.6 67 1-69 102-174 (244)
259 PF01078 Mg_chelatase: Magnesi 98.7 6.9E-09 1.5E-13 86.9 1.4 22 1-22 25-46 (206)
260 smart00763 AAA_PrkA PrkA AAA d 98.7 4.2E-07 9.1E-12 82.6 12.8 65 82-147 250-329 (361)
261 PRK06526 transposase; Provisio 98.7 5E-08 1.1E-12 85.7 6.5 68 1-70 101-172 (254)
262 PF14532 Sigma54_activ_2: Sigm 98.6 1.1E-07 2.3E-12 75.9 7.5 103 1-131 24-137 (138)
263 PRK05917 DNA polymerase III su 98.6 6.1E-07 1.3E-11 79.6 12.7 113 1-132 22-154 (290)
264 PF12774 AAA_6: Hydrolytic ATP 98.6 4E-07 8.6E-12 78.7 11.3 129 2-142 36-177 (231)
265 PF13401 AAA_22: AAA domain; P 98.6 2E-07 4.3E-12 73.4 8.3 70 1-70 7-100 (131)
266 PF12775 AAA_7: P-loop contain 98.6 2.4E-07 5.3E-12 82.2 9.8 139 1-148 36-196 (272)
267 PRK13406 bchD magnesium chelat 98.6 2.4E-07 5.2E-12 90.3 10.0 190 1-212 28-250 (584)
268 COG1484 DnaC DNA replication p 98.6 1.7E-07 3.8E-12 82.3 7.8 67 1-69 108-179 (254)
269 PRK09183 transposase/IS protei 98.6 2.3E-07 5E-12 81.9 8.4 68 1-69 105-176 (259)
270 KOG1970|consensus 98.6 4.2E-06 9.1E-11 78.6 16.9 168 1-183 113-320 (634)
271 PRK06921 hypothetical protein; 98.6 3.5E-07 7.6E-12 81.0 9.5 65 1-68 120-188 (266)
272 KOG1968|consensus 98.5 3.3E-07 7.1E-12 92.4 8.1 164 1-182 360-535 (871)
273 COG3267 ExeA Type II secretory 98.5 1E-05 2.2E-10 69.4 14.9 174 2-186 55-256 (269)
274 PRK08939 primosomal protein Dn 98.5 3E-07 6.5E-12 83.0 6.1 67 1-69 159-229 (306)
275 PF01695 IstB_IS21: IstB-like 98.4 1.2E-07 2.6E-12 78.8 3.2 67 1-69 50-120 (178)
276 cd01120 RecA-like_NTPases RecA 98.4 2.4E-06 5.3E-11 69.5 10.3 72 1-72 2-100 (165)
277 CHL00181 cbbX CbbX; Provisiona 98.4 3.1E-07 6.7E-12 82.3 5.2 74 224-303 122-200 (287)
278 PF00931 NB-ARC: NB-ARC domain 98.4 2E-06 4.4E-11 77.2 10.5 155 1-176 22-203 (287)
279 PRK10365 transcriptional regul 98.4 5.2E-06 1.1E-10 79.4 13.6 165 1-183 165-372 (441)
280 KOG0478|consensus 98.4 5.8E-06 1.3E-10 79.4 13.1 134 1-145 465-626 (804)
281 PHA00729 NTP-binding motif con 98.4 1.8E-06 3.9E-11 73.7 8.4 23 1-23 20-42 (226)
282 PRK07132 DNA polymerase III su 98.4 2.6E-05 5.6E-10 70.0 16.3 137 2-165 22-176 (299)
283 PRK05818 DNA polymerase III su 98.3 6.8E-06 1.5E-10 71.5 11.4 116 1-132 10-147 (261)
284 COG0606 Predicted ATPase with 98.3 8.1E-07 1.8E-11 82.5 5.8 22 1-22 201-222 (490)
285 KOG2228|consensus 98.3 2.5E-06 5.5E-11 75.6 8.2 134 1-145 52-219 (408)
286 TIGR02880 cbbX_cfxQ probable R 98.3 7.3E-07 1.6E-11 79.9 4.9 73 224-302 121-198 (284)
287 PRK08118 topology modulation p 98.3 1.1E-05 2.5E-10 66.3 10.9 31 1-31 4-34 (167)
288 COG3283 TyrR Transcriptional r 98.3 3.3E-05 7.1E-10 69.2 13.9 169 1-184 230-433 (511)
289 PRK07276 DNA polymerase III su 98.3 3.8E-05 8.2E-10 68.5 14.5 149 1-176 27-198 (290)
290 COG1618 Predicted nucleotide k 98.2 5E-05 1.1E-09 60.6 13.3 22 1-22 8-29 (179)
291 PRK13765 ATP-dependent proteas 98.2 1.2E-05 2.5E-10 79.3 12.0 99 102-209 277-397 (637)
292 PRK07261 topology modulation p 98.2 1.6E-05 3.5E-10 65.7 10.8 31 1-31 3-33 (171)
293 COG1241 MCM2 Predicted ATPase 98.2 8E-06 1.7E-10 80.1 10.3 136 1-146 322-484 (682)
294 TIGR02881 spore_V_K stage V sp 98.2 2.1E-06 4.5E-11 76.2 5.1 72 225-303 106-182 (261)
295 TIGR02237 recomb_radB DNA repa 98.2 7.4E-06 1.6E-10 70.1 7.8 71 1-71 15-111 (209)
296 PF13207 AAA_17: AAA domain; P 98.2 1.5E-06 3.2E-11 67.4 3.1 31 1-31 2-32 (121)
297 KOG1051|consensus 98.1 1.6E-05 3.5E-10 80.0 9.5 100 1-113 594-712 (898)
298 PF05707 Zot: Zonular occluden 98.1 1.3E-05 2.9E-10 67.6 7.8 122 2-132 4-146 (193)
299 cd01124 KaiC KaiC is a circadi 98.1 3.8E-05 8.2E-10 64.3 10.2 32 1-32 2-36 (187)
300 KOG2543|consensus 98.1 3.5E-05 7.7E-10 69.6 10.2 131 1-144 33-192 (438)
301 PRK04841 transcriptional regul 98.0 0.00011 2.4E-09 76.7 15.6 156 1-176 35-226 (903)
302 PHA02624 large T antigen; Prov 98.0 1.6E-05 3.4E-10 76.6 7.3 118 1-131 434-561 (647)
303 KOG1051|consensus 98.0 5.8E-05 1.3E-09 76.1 11.0 136 2-147 212-365 (898)
304 TIGR01618 phage_P_loop phage n 98.0 1.1E-05 2.3E-10 69.0 5.1 20 1-20 15-34 (220)
305 COG3284 AcoR Transcriptional a 97.9 6.5E-05 1.4E-09 72.2 10.3 172 1-184 339-541 (606)
306 TIGR00763 lon ATP-dependent pr 97.9 7.7E-06 1.7E-10 83.3 4.3 69 226-302 416-495 (775)
307 KOG0480|consensus 97.9 1.6E-05 3.5E-10 75.9 5.9 160 1-179 381-570 (764)
308 COG5271 MDN1 AAA ATPase contai 97.9 1.1E-05 2.4E-10 84.2 5.1 144 1-146 1546-1704(4600)
309 PF03969 AFG1_ATPase: AFG1-lik 97.9 3.6E-05 7.9E-10 71.0 8.0 97 1-112 65-168 (362)
310 PRK11823 DNA repair protein Ra 97.9 7.7E-05 1.7E-09 71.1 10.4 72 1-72 83-171 (446)
311 TIGR02012 tigrfam_recA protein 97.9 7.5E-05 1.6E-09 67.5 9.7 72 1-72 58-148 (321)
312 PF00493 MCM: MCM2/3/5 family 97.9 6.7E-06 1.5E-10 75.3 3.0 133 1-148 60-224 (331)
313 PF14516 AAA_35: AAA-like doma 97.9 0.00039 8.5E-09 63.8 14.5 167 1-180 34-244 (331)
314 cd01121 Sms Sms (bacterial rad 97.9 9.4E-05 2E-09 68.6 10.3 72 1-72 85-173 (372)
315 COG4619 ABC-type uncharacteriz 97.9 8.8E-05 1.9E-09 59.7 8.4 22 1-22 32-53 (223)
316 PLN03210 Resistant to P. syrin 97.9 0.00017 3.6E-09 77.1 13.1 149 1-169 210-390 (1153)
317 PRK05800 cobU adenosylcobinami 97.9 0.00011 2.4E-09 60.6 9.3 67 1-71 4-90 (170)
318 PRK04296 thymidine kinase; Pro 97.9 0.00028 6.1E-09 59.4 12.0 30 1-30 5-37 (190)
319 cd00983 recA RecA is a bacter 97.9 9.1E-05 2E-09 67.1 9.4 72 1-72 58-148 (325)
320 KOG2170|consensus 97.9 0.0003 6.4E-09 61.8 12.0 68 3-70 115-191 (344)
321 PF13671 AAA_33: AAA domain; P 97.8 3.7E-05 8E-10 61.3 5.9 32 1-34 2-33 (143)
322 TIGR02688 conserved hypothetic 97.8 9.7E-05 2.1E-09 68.5 9.0 58 1-70 212-273 (449)
323 PRK00080 ruvB Holliday junctio 97.8 2.4E-05 5.3E-10 71.8 4.6 70 223-303 101-184 (328)
324 PRK03839 putative kinase; Prov 97.8 1.8E-05 3.9E-10 66.0 3.4 30 1-30 3-32 (180)
325 KOG3347|consensus 97.8 1.7E-05 3.7E-10 62.2 3.0 30 1-30 10-39 (176)
326 PRK09361 radB DNA repair and r 97.8 9.3E-05 2E-09 64.1 7.9 32 1-32 26-60 (225)
327 COG4088 Predicted nucleotide k 97.8 0.0001 2.2E-09 61.2 7.3 23 1-23 4-26 (261)
328 PRK13695 putative NTPase; Prov 97.8 0.001 2.2E-08 55.1 13.6 22 1-22 3-24 (174)
329 cd01131 PilT Pilus retraction 97.8 4.9E-05 1.1E-09 64.5 5.7 67 1-67 4-84 (198)
330 PRK00625 shikimate kinase; Pro 97.7 2.3E-05 5E-10 64.8 3.4 30 1-30 3-32 (173)
331 PRK00131 aroK shikimate kinase 97.7 2.3E-05 4.9E-10 64.8 3.4 29 1-29 7-35 (175)
332 cd00464 SK Shikimate kinase (S 97.7 3E-05 6.5E-10 62.7 3.6 30 1-30 2-31 (154)
333 PRK13947 shikimate kinase; Pro 97.7 2.9E-05 6.4E-10 64.1 3.5 30 1-30 4-33 (171)
334 TIGR01359 UMP_CMP_kin_fam UMP- 97.7 3E-05 6.5E-10 64.8 3.6 33 1-35 2-34 (183)
335 PF03266 NTPase_1: NTPase; In 97.7 0.0001 2.2E-09 60.6 6.5 22 1-22 2-23 (168)
336 COG1102 Cmk Cytidylate kinase 97.7 3E-05 6.6E-10 61.8 3.1 27 1-27 3-29 (179)
337 PRK06217 hypothetical protein; 97.7 3.4E-05 7.4E-10 64.5 3.6 30 1-30 4-33 (183)
338 TIGR00635 ruvB Holliday juncti 97.7 4.6E-05 9.9E-10 69.2 4.7 68 224-302 81-162 (305)
339 cd00544 CobU Adenosylcobinamid 97.7 0.00061 1.3E-08 56.1 10.7 70 1-72 2-88 (169)
340 PRK13949 shikimate kinase; Pro 97.7 3.4E-05 7.3E-10 63.7 3.3 30 1-30 4-33 (169)
341 PF10236 DAP3: Mitochondrial r 97.7 0.0037 8.1E-08 56.7 16.8 129 46-174 142-308 (309)
342 cd03283 ABC_MutS-like MutS-lik 97.7 0.00046 1E-08 58.5 10.2 20 1-20 28-47 (199)
343 PRK14532 adenylate kinase; Pro 97.7 3.7E-05 8.1E-10 64.6 3.5 34 1-36 3-36 (188)
344 PRK06581 DNA polymerase III su 97.6 0.0018 3.9E-08 55.6 13.3 130 2-147 19-163 (263)
345 PRK06762 hypothetical protein; 97.6 0.00011 2.4E-09 60.3 6.0 35 1-35 5-39 (166)
346 TIGR01313 therm_gnt_kin carboh 97.6 5.3E-05 1.2E-09 62.0 3.9 32 1-34 1-32 (163)
347 PRK08533 flagellar accessory p 97.6 0.00061 1.3E-08 59.1 10.7 70 1-70 27-130 (230)
348 KOG0482|consensus 97.6 8.5E-05 1.8E-09 69.3 5.4 174 1-179 378-585 (721)
349 PF07693 KAP_NTPase: KAP famil 97.6 0.0023 4.9E-08 58.6 14.9 78 57-147 172-265 (325)
350 cd02021 GntK Gluconate kinase 97.6 4.9E-05 1.1E-09 61.3 3.5 27 1-27 2-28 (150)
351 PF13604 AAA_30: AAA domain; P 97.6 5.6E-05 1.2E-09 64.0 3.9 97 2-113 22-134 (196)
352 PRK14531 adenylate kinase; Pro 97.6 4.9E-05 1.1E-09 63.6 3.5 32 1-34 5-36 (183)
353 cd01428 ADK Adenylate kinase ( 97.6 4.9E-05 1.1E-09 64.0 3.5 32 1-34 2-33 (194)
354 cd02020 CMPK Cytidine monophos 97.6 5.1E-05 1.1E-09 60.8 3.4 30 1-30 2-31 (147)
355 COG1373 Predicted ATPase (AAA+ 97.6 0.00042 9E-09 65.2 9.9 120 1-139 40-161 (398)
356 cd03216 ABC_Carb_Monos_I This 97.6 0.00068 1.5E-08 55.5 10.1 102 1-115 29-145 (163)
357 PHA02774 E1; Provisional 97.6 0.00032 6.9E-09 67.6 9.1 31 1-31 437-468 (613)
358 PRK00771 signal recognition pa 97.6 0.00099 2.1E-08 63.1 12.3 198 1-213 98-333 (437)
359 PF08433 KTI12: Chromatin asso 97.6 0.00027 5.8E-09 62.7 7.8 68 1-69 4-82 (270)
360 PRK10536 hypothetical protein; 97.6 0.00036 7.9E-09 60.7 8.3 21 1-21 77-97 (262)
361 PRK09354 recA recombinase A; P 97.6 0.00047 1E-08 63.0 9.3 71 1-71 63-152 (349)
362 PF00910 RNA_helicase: RNA hel 97.6 6.1E-05 1.3E-09 57.1 3.0 23 1-23 1-23 (107)
363 cd00227 CPT Chloramphenicol (C 97.6 5E-05 1.1E-09 63.1 2.7 34 1-34 5-38 (175)
364 COG3854 SpoIIIAA ncharacterize 97.5 0.00023 4.9E-09 60.3 6.5 69 1-69 140-230 (308)
365 PF04665 Pox_A32: Poxvirus A32 97.5 0.0024 5.2E-08 55.3 13.0 127 1-143 16-168 (241)
366 PRK14530 adenylate kinase; Pro 97.5 6.9E-05 1.5E-09 64.4 3.5 29 1-29 6-34 (215)
367 PF01583 APS_kinase: Adenylyls 97.5 0.00062 1.3E-08 54.9 8.7 37 1-37 5-44 (156)
368 COG5271 MDN1 AAA ATPase contai 97.5 0.00069 1.5E-08 71.6 10.9 133 1-146 891-1048(4600)
369 TIGR03574 selen_PSTK L-seryl-t 97.5 0.00089 1.9E-08 58.9 10.6 34 1-34 2-38 (249)
370 COG1936 Predicted nucleotide k 97.5 5.7E-05 1.2E-09 61.0 2.6 29 1-30 3-31 (180)
371 cd02027 APSK Adenosine 5'-phos 97.5 0.00032 6.9E-09 56.6 7.0 34 1-34 2-38 (149)
372 PF08303 tRNA_lig_kinase: tRNA 97.5 0.0068 1.5E-07 48.9 14.3 131 4-150 5-148 (168)
373 PRK14722 flhF flagellar biosyn 97.5 0.00042 9.2E-09 64.0 8.6 22 1-22 140-161 (374)
374 cd01128 rho_factor Transcripti 97.5 0.0007 1.5E-08 59.3 9.5 24 1-24 19-42 (249)
375 PTZ00088 adenylate kinase 1; P 97.5 7.7E-05 1.7E-09 64.5 3.4 33 1-35 9-41 (229)
376 TIGR01420 pilT_fam pilus retra 97.5 0.00015 3.3E-09 66.9 5.5 67 1-67 125-205 (343)
377 cd00267 ABC_ATPase ABC (ATP-bi 97.5 0.0011 2.3E-08 54.0 9.9 67 2-68 29-109 (157)
378 cd03222 ABC_RNaseL_inhibitor T 97.5 0.00079 1.7E-08 55.9 9.2 68 1-68 28-100 (177)
379 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.0004 8.6E-09 60.5 7.9 33 1-33 22-63 (235)
380 PRK06547 hypothetical protein; 97.5 8.3E-05 1.8E-09 61.4 3.3 30 1-30 18-47 (172)
381 PRK11331 5-methylcytosine-spec 97.5 0.00015 3.3E-09 68.0 5.4 61 224-297 272-356 (459)
382 cd03281 ABC_MSH5_euk MutS5 hom 97.5 0.00071 1.5E-08 58.0 9.1 20 1-20 32-51 (213)
383 PRK12723 flagellar biosynthesi 97.5 0.0034 7.3E-08 58.5 14.1 159 1-171 177-374 (388)
384 COG0703 AroK Shikimate kinase 97.5 7.6E-05 1.6E-09 60.8 2.8 30 1-30 5-34 (172)
385 PRK09376 rho transcription ter 97.5 0.00027 5.9E-09 65.1 6.7 23 1-23 172-194 (416)
386 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.5 0.00097 2.1E-08 53.4 9.2 65 2-68 30-99 (144)
387 COG4650 RtcR Sigma54-dependent 97.5 0.00018 3.9E-09 62.9 5.2 70 1-70 211-295 (531)
388 PRK10867 signal recognition pa 97.5 0.0018 3.9E-08 61.2 12.2 200 1-213 103-341 (433)
389 COG0563 Adk Adenylate kinase a 97.5 9.8E-05 2.1E-09 61.3 3.4 32 1-34 3-34 (178)
390 TIGR01351 adk adenylate kinase 97.5 9.9E-05 2.1E-09 63.2 3.5 28 1-28 2-29 (210)
391 TIGR00416 sms DNA repair prote 97.5 0.00093 2E-08 63.8 10.3 72 1-72 97-185 (454)
392 PF13245 AAA_19: Part of AAA d 97.5 0.00017 3.6E-09 50.9 4.0 30 2-31 14-50 (76)
393 COG1066 Sms Predicted ATP-depe 97.4 0.00042 9E-09 63.6 7.4 104 1-108 96-218 (456)
394 PRK08233 hypothetical protein; 97.4 0.0017 3.6E-08 54.0 10.7 31 1-31 6-37 (182)
395 PRK03731 aroL shikimate kinase 97.4 0.00012 2.6E-09 60.5 3.6 30 1-30 5-34 (171)
396 PRK06067 flagellar accessory p 97.4 0.00067 1.5E-08 59.1 8.6 32 1-32 28-62 (234)
397 PF01745 IPT: Isopentenyl tran 97.4 0.0018 4E-08 54.4 10.5 132 1-147 4-141 (233)
398 TIGR02858 spore_III_AA stage I 97.4 0.00027 5.9E-09 62.6 6.0 23 1-23 114-136 (270)
399 TIGR01360 aden_kin_iso1 adenyl 97.4 0.00012 2.5E-09 61.4 3.6 27 1-27 6-32 (188)
400 TIGR02525 plasmid_TraJ plasmid 97.4 0.00024 5.1E-09 65.9 5.8 67 1-67 152-235 (372)
401 KOG0477|consensus 97.4 0.00013 2.8E-09 69.7 4.1 27 1-27 485-511 (854)
402 PF10443 RNA12: RNA12 protein; 97.4 0.0092 2E-07 55.6 16.0 36 113-148 197-232 (431)
403 PRK05057 aroK shikimate kinase 97.4 0.00012 2.7E-09 60.5 3.5 31 1-31 7-37 (172)
404 PRK14528 adenylate kinase; Pro 97.4 0.00012 2.6E-09 61.4 3.4 28 1-28 4-31 (186)
405 PRK00279 adk adenylate kinase; 97.4 0.00012 2.7E-09 62.9 3.5 32 1-34 3-34 (215)
406 cd01393 recA_like RecA is a b 97.4 0.00068 1.5E-08 58.6 8.2 33 1-33 22-63 (226)
407 PRK02496 adk adenylate kinase; 97.4 0.00011 2.5E-09 61.4 3.2 28 1-28 4-31 (184)
408 cd01394 radB RadB. The archaea 97.4 0.00076 1.6E-08 58.0 8.4 32 1-32 22-56 (218)
409 cd03243 ABC_MutS_homologs The 97.4 0.0016 3.6E-08 55.3 10.3 20 1-20 32-51 (202)
410 PRK14974 cell division protein 97.4 0.0015 3.1E-08 59.8 10.3 32 1-32 143-177 (336)
411 PRK13946 shikimate kinase; Pro 97.4 0.00013 2.8E-09 61.1 3.2 30 1-30 13-42 (184)
412 COG1126 GlnQ ABC-type polar am 97.4 0.00089 1.9E-08 56.3 7.8 43 45-97 142-184 (240)
413 COG1485 Predicted ATPase [Gene 97.4 0.0014 3E-08 59.1 9.5 96 1-112 68-171 (367)
414 COG1116 TauB ABC-type nitrate/ 97.3 0.0016 3.4E-08 56.1 9.4 22 1-22 32-53 (248)
415 cd03228 ABCC_MRP_Like The MRP 97.3 0.00085 1.9E-08 55.4 7.7 22 1-22 31-52 (171)
416 PLN02200 adenylate kinase fami 97.3 0.00017 3.7E-09 62.7 3.6 34 1-36 46-79 (234)
417 PF00406 ADK: Adenylate kinase 97.3 0.00013 2.9E-09 58.9 2.7 32 3-36 1-32 (151)
418 smart00534 MUTSac ATPase domai 97.3 0.0039 8.5E-08 52.2 11.6 19 1-19 2-20 (185)
419 PRK13948 shikimate kinase; Pro 97.3 0.00019 4.2E-09 59.7 3.6 30 1-30 13-42 (182)
420 PF09848 DUF2075: Uncharacteri 97.3 0.00072 1.6E-08 62.7 7.7 22 1-22 4-25 (352)
421 PF12846 AAA_10: AAA-like doma 97.3 0.0035 7.6E-08 56.4 12.1 69 222-302 218-291 (304)
422 PRK13900 type IV secretion sys 97.3 0.00036 7.7E-09 63.9 5.5 67 1-67 163-245 (332)
423 TIGR02782 TrbB_P P-type conjug 97.3 0.00034 7.5E-09 63.1 5.4 67 1-67 135-214 (299)
424 cd02019 NK Nucleoside/nucleoti 97.3 0.00024 5.2E-09 49.1 3.4 22 1-22 2-23 (69)
425 PF13238 AAA_18: AAA domain; P 97.3 0.00013 2.7E-09 56.9 2.2 22 1-22 1-22 (129)
426 PRK06696 uridine kinase; Valid 97.3 0.00022 4.9E-09 61.6 3.9 35 1-35 25-62 (223)
427 PRK05973 replicative DNA helic 97.3 0.0019 4.2E-08 55.9 9.6 32 1-32 67-101 (237)
428 PRK14527 adenylate kinase; Pro 97.3 0.00014 3.1E-09 61.2 2.5 27 1-27 9-35 (191)
429 PF13191 AAA_16: AAA ATPase do 97.3 0.00037 8E-09 58.0 5.1 34 1-34 27-63 (185)
430 TIGR01425 SRP54_euk signal rec 97.3 0.003 6.5E-08 59.4 11.5 33 1-33 103-138 (429)
431 PF00448 SRP54: SRP54-type pro 97.3 0.0018 3.9E-08 54.7 8.9 32 1-32 4-38 (196)
432 cd00984 DnaB_C DnaB helicase C 97.3 0.0029 6.4E-08 55.2 10.6 31 1-31 16-50 (242)
433 PF06745 KaiC: KaiC; InterPro 97.3 0.0029 6.2E-08 54.8 10.4 91 1-94 22-149 (226)
434 cd00046 DEXDc DEAD-like helica 97.3 0.00059 1.3E-08 53.4 5.6 22 1-22 3-24 (144)
435 COG3842 PotA ABC-type spermidi 97.3 0.00048 1E-08 62.9 5.6 21 2-22 35-55 (352)
436 COG2909 MalT ATP-dependent tra 97.3 0.0022 4.8E-08 63.9 10.4 152 1-170 40-229 (894)
437 PF05272 VirE: Virulence-assoc 97.3 0.00026 5.6E-09 59.8 3.6 106 1-131 55-169 (198)
438 cd01130 VirB11-like_ATPase Typ 97.3 0.00042 9.2E-09 58.1 4.9 67 1-67 28-110 (186)
439 PRK04040 adenylate kinase; Pro 97.3 0.00024 5.2E-09 59.6 3.3 26 1-26 5-32 (188)
440 TIGR03877 thermo_KaiC_1 KaiC d 97.2 0.0036 7.9E-08 54.6 10.9 32 1-32 24-58 (237)
441 COG2874 FlaH Predicted ATPases 97.2 0.0021 4.6E-08 53.9 8.8 112 1-123 31-178 (235)
442 PRK04182 cytidylate kinase; Pr 97.2 0.00026 5.6E-09 58.8 3.5 28 1-28 3-30 (180)
443 PRK01184 hypothetical protein; 97.2 0.00025 5.3E-09 59.3 3.4 28 1-29 4-31 (184)
444 cd03238 ABC_UvrA The excision 97.2 0.0033 7.2E-08 52.1 10.0 21 1-21 24-44 (176)
445 cd03247 ABCC_cytochrome_bd The 97.2 0.0034 7.4E-08 52.1 10.2 22 1-22 31-52 (178)
446 cd01125 repA Hexameric Replica 97.2 0.011 2.3E-07 51.7 13.8 20 2-21 5-24 (239)
447 TIGR02173 cyt_kin_arch cytidyl 97.2 0.00027 5.8E-09 58.2 3.4 28 1-28 3-30 (171)
448 cd03115 SRP The signal recogni 97.2 0.0014 3E-08 54.2 7.7 33 1-33 3-38 (173)
449 cd03230 ABC_DR_subfamily_A Thi 97.2 0.0027 5.8E-08 52.5 9.4 22 1-22 29-50 (173)
450 cd01122 GP4d_helicase GP4d_hel 97.2 0.0022 4.8E-08 57.1 9.5 31 1-31 33-67 (271)
451 PF00437 T2SE: Type II/IV secr 97.2 0.0004 8.6E-09 61.9 4.6 68 1-68 130-208 (270)
452 PF13521 AAA_28: AAA domain; P 97.2 0.00027 5.8E-09 57.9 3.1 26 1-27 2-27 (163)
453 cd03246 ABCC_Protease_Secretio 97.2 0.0034 7.4E-08 51.9 9.8 22 1-22 31-52 (173)
454 COG1117 PstB ABC-type phosphat 97.2 0.0026 5.5E-08 53.5 8.6 20 3-22 38-57 (253)
455 PRK14526 adenylate kinase; Pro 97.2 0.00035 7.6E-09 59.7 3.6 32 1-34 3-34 (211)
456 PLN02840 tRNA dimethylallyltra 97.2 0.00051 1.1E-08 64.1 4.9 34 1-34 24-57 (421)
457 PRK13764 ATPase; Provisional 97.2 0.00049 1.1E-08 67.4 4.9 67 1-68 260-335 (602)
458 TIGR03878 thermo_KaiC_2 KaiC d 97.2 0.0042 9.2E-08 54.9 10.5 32 1-32 39-73 (259)
459 PF13481 AAA_25: AAA domain; P 97.1 0.0027 5.8E-08 53.4 8.7 72 1-72 35-156 (193)
460 cd03280 ABC_MutS2 MutS2 homolo 97.1 0.0056 1.2E-07 51.9 10.7 19 1-19 31-49 (200)
461 COG1120 FepC ABC-type cobalami 97.1 0.0012 2.6E-08 57.7 6.5 21 2-22 32-52 (258)
462 PRK09519 recA DNA recombinatio 97.1 0.0027 5.9E-08 63.9 9.8 71 1-71 63-152 (790)
463 cd00561 CobA_CobO_BtuR ATP:cor 97.1 0.0084 1.8E-07 48.6 10.9 28 1-28 5-35 (159)
464 TIGR00150 HI0065_YjeE ATPase, 97.1 0.00038 8.2E-09 54.6 3.1 25 1-25 25-49 (133)
465 PF13479 AAA_24: AAA domain 97.1 0.00083 1.8E-08 57.6 5.5 64 1-69 6-80 (213)
466 PHA02530 pseT polynucleotide k 97.1 0.00039 8.5E-09 62.9 3.6 29 1-31 5-34 (300)
467 PLN02674 adenylate kinase 97.1 0.00041 8.8E-09 60.4 3.4 33 1-35 34-66 (244)
468 COG3839 MalK ABC-type sugar tr 97.1 0.00077 1.7E-08 61.2 5.2 22 1-22 32-53 (338)
469 TIGR02788 VirB11 P-type DNA tr 97.1 0.00066 1.4E-08 61.7 4.8 67 1-67 147-228 (308)
470 PRK13851 type IV secretion sys 97.1 0.00058 1.3E-08 62.6 4.5 67 1-67 165-246 (344)
471 PF06414 Zeta_toxin: Zeta toxi 97.1 0.0016 3.4E-08 55.3 6.8 38 1-38 18-56 (199)
472 TIGR00767 rho transcription te 97.1 0.0014 3.1E-08 60.7 7.0 23 1-23 171-193 (415)
473 cd01129 PulE-GspE PulE/GspE Th 97.1 0.00088 1.9E-08 59.4 5.4 67 1-67 83-159 (264)
474 PRK11889 flhF flagellar biosyn 97.1 0.0051 1.1E-07 57.0 10.3 32 1-32 244-278 (436)
475 TIGR00959 ffh signal recogniti 97.1 0.01 2.2E-07 56.2 12.6 200 1-213 102-340 (428)
476 COG1124 DppF ABC-type dipeptid 97.1 0.0015 3.3E-08 55.9 6.4 21 2-22 37-57 (252)
477 PF06309 Torsin: Torsin; Inte 97.1 0.0016 3.4E-08 50.3 5.9 21 2-22 57-77 (127)
478 COG0194 Gmk Guanylate kinase [ 97.1 0.0007 1.5E-08 55.6 4.2 22 1-22 7-28 (191)
479 COG2884 FtsE Predicted ATPase 97.1 0.0025 5.4E-08 52.5 7.3 22 1-22 31-52 (223)
480 PRK13833 conjugal transfer pro 97.1 0.00093 2E-08 60.7 5.4 67 1-67 147-225 (323)
481 PRK10078 ribose 1,5-bisphospho 97.1 0.00045 9.8E-09 57.9 3.1 27 1-27 5-31 (186)
482 PRK12339 2-phosphoglycerate ki 97.0 0.00058 1.3E-08 57.7 3.7 26 1-26 6-31 (197)
483 COG0529 CysC Adenylylsulfate k 97.0 0.0018 3.9E-08 52.7 6.3 35 1-35 26-63 (197)
484 KOG3928|consensus 97.0 0.028 6.1E-07 51.8 14.5 51 126-177 405-458 (461)
485 KOG0058|consensus 97.0 0.0021 4.5E-08 63.1 7.8 40 44-90 609-648 (716)
486 cd03282 ABC_MSH4_euk MutS4 hom 97.0 0.0081 1.7E-07 51.1 10.6 20 1-20 32-51 (204)
487 PRK04301 radA DNA repair and r 97.0 0.003 6.4E-08 57.7 8.5 33 1-33 105-146 (317)
488 TIGR01526 nadR_NMN_Atrans nico 97.0 0.0014 3E-08 59.9 6.3 32 1-32 165-196 (325)
489 PLN03187 meiotic recombination 97.0 0.0035 7.5E-08 57.5 8.8 32 2-33 130-170 (344)
490 COG2805 PilT Tfp pilus assembl 97.0 0.00089 1.9E-08 59.0 4.7 69 1-69 128-210 (353)
491 PRK14529 adenylate kinase; Pro 97.0 0.00043 9.4E-09 59.5 2.8 27 1-27 3-29 (223)
492 COG1118 CysA ABC-type sulfate/ 97.0 0.0027 5.9E-08 56.2 7.6 21 2-22 32-52 (345)
493 COG1121 ZnuC ABC-type Mn/Zn tr 97.0 0.003 6.5E-08 55.0 7.9 21 2-22 34-54 (254)
494 PF02562 PhoH: PhoH-like prote 97.0 0.0012 2.6E-08 55.8 5.3 22 1-22 22-43 (205)
495 PRK12724 flagellar biosynthesi 97.0 0.0076 1.7E-07 56.4 11.0 33 1-33 226-262 (432)
496 COG2804 PulE Type II secretory 97.0 0.00097 2.1E-08 63.0 5.1 68 1-68 261-338 (500)
497 COG0714 MoxR-like ATPases [Gen 97.0 0.0011 2.3E-08 61.0 5.4 66 226-302 114-192 (329)
498 cd03214 ABC_Iron-Siderophores_ 97.0 0.0084 1.8E-07 49.9 10.2 22 1-22 28-49 (180)
499 COG4178 ABC-type uncharacteriz 97.0 0.0036 7.8E-08 60.9 8.8 22 1-22 422-443 (604)
500 PLN02459 probable adenylate ki 97.0 0.00069 1.5E-08 59.4 3.5 33 1-35 32-64 (261)
No 1
>KOG0733|consensus
Probab=100.00 E-value=2e-71 Score=509.57 Aligned_cols=318 Identities=39% Similarity=0.626 Sum_probs=282.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
||||||||||||+||+++|.++++||+.+++.++.+.+.|++++.++.+|+.|....|||+||||||.+.+++.....+.
T Consensus 226 vLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreM 305 (802)
T KOG0733|consen 226 VLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREM 305 (802)
T ss_pred eeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHhhccCCCCC--CCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhh
Q psy4538 81 SRRLKTEFLISLDGASTLD--DDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDD 156 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~~~--~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~ 156 (343)
.+|++.+|+..|+++.... +.+|+|||+||+|+.+|++++| ||+..|.+..|+..+|.+||+..+++..... ..+
T Consensus 306 ErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d 384 (802)
T KOG0733|consen 306 ERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFD 384 (802)
T ss_pred HHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcC
Confidence 9999999999999987643 4789999999999999999999 9999999999999999999999999876554 458
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHhcccccccccc------------c------------cc-------------------
Q psy4538 157 IEEVGRMTTDFSGADMASLCREASLGPVRSIDLS------------R------------ID------------------- 193 (343)
Q Consensus 157 ~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~------------~------------~~------------------- 193 (343)
+..||+.|+||+++||.++|.+|+..|++++-.. + +.
T Consensus 385 ~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i 464 (802)
T KOG0733|consen 385 FKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAI 464 (802)
T ss_pred HHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHH
Confidence 9999999999999999999999998888774110 0 00
Q ss_pred ----------ccCCcccChhHHHHHHHhcC--------------------------------------------------
Q psy4538 194 ----------ALDVRPISIDDFRDALKTVR-------------------------------------------------- 213 (343)
Q Consensus 194 ----------~~~~~~i~~~d~~~a~~~~~-------------------------------------------------- 213 (343)
....-.|+++||.+|+..++
T Consensus 465 ~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~ 544 (802)
T KOG0733|consen 465 LNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDA 544 (802)
T ss_pred HhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCC
Confidence 00011267888888888877
Q ss_pred --------CCccccccc-----------------------------------------cCcceEeecchhhhhcccCCCc
Q psy4538 214 --------PSVCQADFV-----------------------------------------HQPSIIFIDEIDSLLCQRSDQE 244 (343)
Q Consensus 214 --------ps~~~k~~~-----------------------------------------~~p~ilf~DEiDsl~~~R~~~~ 244 (343)
|++|+|+++ .+||||||||+|+|.++|++..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~ 624 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG 624 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC
Confidence 456777663 3799999999999999999999
Q ss_pred chhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEeccCCCCCCCCCCchhHHHHhhhhhhhh
Q psy4538 245 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQKVPGSNPTMDKIDQENETSR 322 (343)
Q Consensus 245 ~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~~P~~~~r~~~~~~~~~~~~~~~~~~ 322 (343)
.+++.|+|||||+||||++.+.+ |||||||||||.||||+|| |||+.+||++|+.++|
T Consensus 625 s~~s~RvvNqLLtElDGl~~R~g--V~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR------------------ 684 (802)
T KOG0733|consen 625 SSVSSRVVNQLLTELDGLEERRG--VYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER------------------ 684 (802)
T ss_pred chhHHHHHHHHHHHhcccccccc--eEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH------------------
Confidence 99999999999999999999666 9999999999999999999 9999999999999887
Q ss_pred hhcHHHHHhhcC--CCCCccCC
Q psy4538 323 RLKTEFLISLDG--ASTLDDDL 342 (343)
Q Consensus 323 ~~~~~~~~~~~~--~~~~~~~~ 342 (343)
.++|++.|+ +--|++|+
T Consensus 685 ---~~ILK~~tkn~k~pl~~dV 703 (802)
T KOG0733|consen 685 ---VAILKTITKNTKPPLSSDV 703 (802)
T ss_pred ---HHHHHHHhccCCCCCCccc
Confidence 788888888 76677665
No 2
>KOG0730|consensus
Probab=100.00 E-value=4.6e-61 Score=446.97 Aligned_cols=315 Identities=38% Similarity=0.606 Sum_probs=276.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcC-CcEEEecccccccccCCCCchh
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQ-PSIIFIDEIDSLLCQRSDQENE 79 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~-p~vl~iDeid~l~~~~~~~~~~ 79 (343)
+|+|||||+|||.+++++|++.++.++.++++++.+++.|++++.++..|+++...+ |++++|||+|.+++++.....
T Consensus 221 ~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~- 299 (693)
T KOG0730|consen 221 LLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD- 299 (693)
T ss_pred ccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-
Confidence 589999999999999999999999999999999999999999999999999999988 999999999999998866554
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh-ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHH
Q psy4538 80 TSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR-RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIE 158 (343)
Q Consensus 80 ~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~-rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~ 158 (343)
...++..+++..+++... ..+++|+++||+|..++++++| ||+..+++..|+..+|.+|++.+.++.... ++.++.
T Consensus 300 ~e~Rv~sqlltL~dg~~~--~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~ 376 (693)
T KOG0730|consen 300 VESRVVSQLLTLLDGLKP--DAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLE 376 (693)
T ss_pred HHHHHHHHHHHHHhhCcC--cCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHH
Confidence 678999999999999874 6789999999999999999998 999999999999999999999999987655 667899
Q ss_pred HHHHHCCCCCHHHHHHHHHHHhcccccccc------ccc-------ccccCCcccChhHH------HHHHH---------
Q psy4538 159 EVGRMTTDFSGADMASLCREASLGPVRSID------LSR-------IDALDVRPISIDDF------RDALK--------- 210 (343)
Q Consensus 159 ~la~~t~g~s~~dl~~l~~~a~~~a~~~~~------~~~-------~~~~~~~~i~~~d~------~~a~~--------- 210 (343)
.++..+.||+++|+..+|++|.+.+.++.. ... -.......++|+|+ +..++
T Consensus 377 ~iA~~thGyvGaDL~~l~~ea~~~~~r~~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~ 456 (693)
T KOG0730|consen 377 DIAVSTHGYVGADLAALCREASLQATRRTLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKH 456 (693)
T ss_pred HHHHHccchhHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999988710 011 11134566888876 12222
Q ss_pred -----h-----------cCCCccccccc-----------------------------------------cCcceEeecch
Q psy4538 211 -----T-----------VRPSVCQADFV-----------------------------------------HQPSIIFIDEI 233 (343)
Q Consensus 211 -----~-----------~~ps~~~k~~~-----------------------------------------~~p~ilf~DEi 233 (343)
+ +.|++|+|+.+ .+|||+|||||
T Consensus 457 pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEi 536 (693)
T KOG0730|consen 457 PEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEI 536 (693)
T ss_pred hHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhH
Confidence 1 34889999863 37999999999
Q ss_pred hhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEeccCCCCCCCCCCchhH
Q psy4538 234 DSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQKVPGSNPTM 311 (343)
Q Consensus 234 Dsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~~P~~~~r~~~~~~~ 311 (343)
|++++.|+++++++++|++||||+||||++..++ |+|||||||||.||+|+|| |||++||||+||.+.|
T Consensus 537 Dsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~--V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR------- 607 (693)
T KOG0730|consen 537 DALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKN--VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEAR------- 607 (693)
T ss_pred HhHhhccCCCccchHHHHHHHHHHHcccccccCc--EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHH-------
Confidence 9999999888889999999999999999998555 9999999999999999999 9999999999999877
Q ss_pred HHHhhhhhhhhhhcHHHHHhhcCCCCCccCC
Q psy4538 312 DKIDQENETSRRLKTEFLISLDGASTLDDDL 342 (343)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (343)
.++|+.-+++.++++|+
T Consensus 608 --------------~~Ilk~~~kkmp~~~~v 624 (693)
T KOG0730|consen 608 --------------LEILKQCAKKMPFSEDV 624 (693)
T ss_pred --------------HHHHHHHHhcCCCCccc
Confidence 77777777777777764
No 3
>KOG0736|consensus
Probab=100.00 E-value=7.9e-57 Score=422.80 Aligned_cols=318 Identities=27% Similarity=0.397 Sum_probs=255.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
+||+|+||||||++++++|+++|.+++.++|.++.+......+..+...|..++...|+|||+-++|.+.-.... ..
T Consensus 434 vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg---ge 510 (953)
T KOG0736|consen 434 VLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG---GE 510 (953)
T ss_pred EEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC---ch
Confidence 589999999999999999999999999999999999888889999999999999999999999999988744333 23
Q ss_pred HHHHHHHHHHhhc-cCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHHH
Q psy4538 81 SRRLKTEFLISLD-GASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEE 159 (343)
Q Consensus 81 ~~~~~~~ll~~l~-~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~ 159 (343)
..++.+.+-..+. .....+..++++|++++..+.+++.+++.|.+.|.++.|+++||.+|++.++...... .+.....
T Consensus 511 d~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n-~~v~~k~ 589 (953)
T KOG0736|consen 511 DARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLN-QDVNLKQ 589 (953)
T ss_pred hHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccc-hHHHHHH
Confidence 3344433333333 2233357789999999999999999999999999999999999999999998876433 3457888
Q ss_pred HHHHCCCCCHHHHHHHHHHHhcccccccccc---------------------------------------cccccCCccc
Q psy4538 160 VGRMTTDFSGADMASLCREASLGPVRSIDLS---------------------------------------RIDALDVRPI 200 (343)
Q Consensus 160 la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~---------------------------------------~~~~~~~~~i 200 (343)
++.++.||+.+++..++..+...+..+.... .+.+.+.+.+
T Consensus 590 ~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV 669 (953)
T KOG0736|consen 590 LARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNV 669 (953)
T ss_pred HHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCcc
Confidence 9999999999999988765532222221110 1222223445
Q ss_pred ChhHHH-------HHHH-----------------------hcCCCccccccc----------------------------
Q psy4538 201 SIDDFR-------DALK-----------------------TVRPSVCQADFV---------------------------- 222 (343)
Q Consensus 201 ~~~d~~-------~a~~-----------------------~~~ps~~~k~~~---------------------------- 222 (343)
+|+|+- +.+. -+.|++|||+++
T Consensus 670 ~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqS 749 (953)
T KOG0736|consen 670 SWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQS 749 (953)
T ss_pred chhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcch
Confidence 555540 0000 123788888873
Q ss_pred -------------cCcceEeecchhhhhcccC--CCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHH
Q psy4538 223 -------------HQPSIIFIDEIDSLLCQRS--DQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAAR 287 (343)
Q Consensus 223 -------------~~p~ilf~DEiDsl~~~R~--~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~all 287 (343)
++||||||||+|||+|+|| ++++|++||+|+|||.||||++....+.|||||||||||.||||||
T Consensus 750 E~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALL 829 (953)
T KOG0736|consen 750 EENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALL 829 (953)
T ss_pred HHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhc
Confidence 4799999999999999998 4567899999999999999999656677999999999999999999
Q ss_pred H--hhhceEeccCCCCCCCCCCchhHHHHhhhhhhhhhhcHHHHHhhcCCCCCccCC
Q psy4538 288 R--RLVKRLYIPLPDEQKVPGSNPTMDKIDQENETSRRLKTEFLISLDGASTLDDDL 342 (343)
Q Consensus 288 R--R~d~~i~~~~P~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (343)
| ||||.+|++.+ ++.+-++-.|+++|+++.|++|+
T Consensus 830 RPGRFDKLvyvG~~--------------------~d~esk~~vL~AlTrkFkLdedV 866 (953)
T KOG0736|consen 830 RPGRFDKLVYVGPN--------------------EDAESKLRVLEALTRKFKLDEDV 866 (953)
T ss_pred CCCccceeEEecCC--------------------ccHHHHHHHHHHHHHHccCCCCc
Confidence 9 99999999988 56677899999999999999997
No 4
>KOG0735|consensus
Probab=100.00 E-value=3.3e-54 Score=401.78 Aligned_cols=318 Identities=28% Similarity=0.387 Sum_probs=251.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC----CcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCC-
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK----ATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSD- 75 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~----~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~- 75 (343)
|||+||+|+|||.|++++++++. +++..++|+.+.........+.+..+|..+.+++|+|++||++|.++...+.
T Consensus 434 Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e 513 (952)
T KOG0735|consen 434 ILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNE 513 (952)
T ss_pred EEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCccc
Confidence 68999999999999999999884 5677899999988766667778899999999999999999999999874332
Q ss_pred -CchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCC
Q psy4538 76 -QENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSL 152 (343)
Q Consensus 76 -~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~ 152 (343)
+...........+++.+.......+..+.+|++.+....+++.+.+ +|..++.++.|...+|.+|++..+++.....
T Consensus 514 ~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~ 593 (952)
T KOG0735|consen 514 NGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDI 593 (952)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhh
Confidence 2233334444555544433333346678999999999999998887 7888999999999999999999998876555
Q ss_pred ChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccc-----------------------cccccCCcccChhHH----
Q psy4538 153 TVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLS-----------------------RIDALDVRPISIDDF---- 205 (343)
Q Consensus 153 ~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~-----------------------~~~~~~~~~i~~~d~---- 205 (343)
...+++.++..|.||.+.|+..++.+|...++...... .+.......+.|+|+
T Consensus 594 ~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~ 673 (952)
T KOG0735|consen 594 TMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLF 673 (952)
T ss_pred hhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHH
Confidence 66688889999999999999999999877776221111 011111122444443
Q ss_pred --HHHHHh-------------------------cCCCccccccc------------------------------------
Q psy4538 206 --RDALKT-------------------------VRPSVCQADFV------------------------------------ 222 (343)
Q Consensus 206 --~~a~~~-------------------------~~ps~~~k~~~------------------------------------ 222 (343)
.++++. +.|++|||+++
T Consensus 674 ~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF 753 (952)
T KOG0735|consen 674 EAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLF 753 (952)
T ss_pred HHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHH
Confidence 111111 22789999873
Q ss_pred -----cCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEe
Q psy4538 223 -----HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLY 295 (343)
Q Consensus 223 -----~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~ 295 (343)
++||||||||+||++|+||.++.|+++|+|||||+||||.++..| |+|+|||.|||+||||||| |||+.||
T Consensus 754 ~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~G--V~i~aaTsRpdliDpALLRpGRlD~~v~ 831 (952)
T KOG0735|consen 754 ERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDG--VYILAATSRPDLIDPALLRPGRLDKLVY 831 (952)
T ss_pred HHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccce--EEEEEecCCccccCHhhcCCCccceeee
Confidence 479999999999999999999999999999999999999999777 9999999999999999999 9999999
Q ss_pred ccCCCCCCCCCCchhHHHHhhhhhhhhhhcHHHHHhhcCCCCCccC
Q psy4538 296 IPLPDEQKVPGSNPTMDKIDQENETSRRLKTEFLISLDGASTLDDD 341 (343)
Q Consensus 296 ~~~P~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (343)
||+|++.+| +|+|..+.....+++|
T Consensus 832 C~~P~~~eR---------------------l~il~~ls~s~~~~~~ 856 (952)
T KOG0735|consen 832 CPLPDEPER---------------------LEILQVLSNSLLKDTD 856 (952)
T ss_pred CCCCCcHHH---------------------HHHHHHHhhccCCccc
Confidence 999999887 6666666665555544
No 5
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=5e-48 Score=386.76 Aligned_cols=299 Identities=39% Similarity=0.642 Sum_probs=246.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
+|||||||||||++++++|++++.+++.+++.++.+.+.++.+..++.+|..+....|+||+|||+|.+.+++.......
T Consensus 215 iLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~ 294 (733)
T TIGR01243 215 VLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEV 294 (733)
T ss_pred EEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchH
Confidence 58999999999999999999999999999999999999999999999999999988999999999999998776554555
Q ss_pred HHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHH
Q psy4538 81 SRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIE 158 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~ 158 (343)
..++...++..+++... ...+++|++||.++.+++++++ ||+..+.++.|+.++|.+||+.+.+.... ..+.++.
T Consensus 295 ~~~~~~~Ll~~ld~l~~--~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~d~~l~ 371 (733)
T TIGR01243 295 EKRVVAQLLTLMDGLKG--RGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AEDVDLD 371 (733)
T ss_pred HHHHHHHHHHHhhcccc--CCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-ccccCHH
Confidence 67788899999988754 5678999999999999999998 99999999999999999999988776533 2345789
Q ss_pred HHHHHCCCCCHHHHHHHHHHHhcccccccccc--------ccc--ccCCcccChhHHHHHHHh-----------------
Q psy4538 159 EVGRMTTDFSGADMASLCREASLGPVRSIDLS--------RID--ALDVRPISIDDFRDALKT----------------- 211 (343)
Q Consensus 159 ~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~--------~~~--~~~~~~i~~~d~~~a~~~----------------- 211 (343)
.+++.+.||+++++..+++.|+..++++.... .+. ......++.+||..+++.
T Consensus 372 ~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~ 451 (733)
T TIGR01243 372 KLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVR 451 (733)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhccccccc
Confidence 99999999999999999999987776543110 000 001112233333332222
Q ss_pred -----------------------------------------cCCCccccccc----------------------------
Q psy4538 212 -----------------------------------------VRPSVCQADFV---------------------------- 222 (343)
Q Consensus 212 -----------------------------------------~~ps~~~k~~~---------------------------- 222 (343)
+.|++|||+.+
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGes 531 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGES 531 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcH
Confidence 23777888752
Q ss_pred -------------cCcceEeecchhhhhcccCCC-cchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH
Q psy4538 223 -------------HQPSIIFIDEIDSLLCQRSDQ-ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR 288 (343)
Q Consensus 223 -------------~~p~ilf~DEiDsl~~~R~~~-~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR 288 (343)
.+||||||||+|+++++|+.. ..+..+++++|||++|||+.... .|+||+|||+|+.||||++|
T Consensus 532 e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~--~v~vI~aTn~~~~ld~allR 609 (733)
T TIGR01243 532 EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS--NVVVIAATNRPDILDPALLR 609 (733)
T ss_pred HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC--CEEEEEeCCChhhCCHhhcC
Confidence 369999999999999999855 34578999999999999998744 49999999999999999999
Q ss_pred --hhhceEeccCCCCCCC
Q psy4538 289 --RLVKRLYIPLPDEQKV 304 (343)
Q Consensus 289 --R~d~~i~~~~P~~~~r 304 (343)
|||++|+||+|+.++|
T Consensus 610 pgRfd~~i~v~~Pd~~~R 627 (733)
T TIGR01243 610 PGRFDRLILVPPPDEEAR 627 (733)
T ss_pred CCccceEEEeCCcCHHHH
Confidence 9999999999998766
No 6
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-39 Score=279.26 Aligned_cols=202 Identities=43% Similarity=0.666 Sum_probs=184.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCC---Cc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSD---QE 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~---~~ 77 (343)
||||||||||||.||||+|++.++.|+.+..+++..+|.|++.+.++.+|..|+.++||||||||||++..++.+ +.
T Consensus 188 VLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~g 267 (406)
T COG1222 188 VLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSG 267 (406)
T ss_pred eEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCc
Confidence 699999999999999999999999999999999999999999999999999999999999999999999988754 34
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
+....|..-+|+++|+++.. .++|-||++||+++.|||+++| ||+..|+||.|+.+.|.+||+-+.++... ..+.
T Consensus 268 DrEVQRTmleLL~qlDGFD~--~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l-~~dv 344 (406)
T COG1222 268 DREVQRTMLELLNQLDGFDP--RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL-ADDV 344 (406)
T ss_pred hHHHHHHHHHHHHhccCCCC--CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC-ccCc
Confidence 45667788889999999987 6679999999999999999999 99999999999999999999999887543 3456
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCC
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRP 214 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~p 214 (343)
+++.|++.+.|+|++||+++|.+|.+.|+|+ ....++++||.+|..++.-
T Consensus 345 d~e~la~~~~g~sGAdlkaictEAGm~AiR~---------~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 345 DLELLARLTEGFSGADLKAICTEAGMFAIRE---------RRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred CHHHHHHhcCCCchHHHHHHHHHHhHHHHHh---------ccCeecHHHHHHHHHHHHh
Confidence 8999999999999999999999999999988 5678999999999988753
No 7
>KOG0738|consensus
Probab=100.00 E-value=6.5e-39 Score=281.81 Aligned_cols=220 Identities=49% Similarity=0.800 Sum_probs=193.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCC-CCchh
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRS-DQENE 79 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~-~~~~~ 79 (343)
||++||||||||.||+++|.++|..|+.|+.+.+.++|-|++++.++.+|+.|+...|++|||||||+|+.+++ .++.+
T Consensus 248 vLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHE 327 (491)
T KOG0738|consen 248 VLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHE 327 (491)
T ss_pred eeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999998876 45667
Q ss_pred HHHHHHHHHHHhhccCCCCCC--CcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhH
Q psy4538 80 TSRRLKTEFLISLDGASTLDD--DLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDI 157 (343)
Q Consensus 80 ~~~~~~~~ll~~l~~~~~~~~--~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~ 157 (343)
.++++..+||..|++...... ..|+|+++||.||+||++++|||...|++|.|+.+.|..+++..++... ..++.++
T Consensus 328 aSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~-~~~~~~~ 406 (491)
T KOG0738|consen 328 ASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVE-LDDPVNL 406 (491)
T ss_pred HHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhcccc-CCCCccH
Confidence 889999999999999876432 3588899999999999999999999999999999999999999998764 3456689
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHhcccccccccc----cc----cccCCcccChhHHHHHHHhcCCCcccccc
Q psy4538 158 EEVGRMTTDFSGADMASLCREASLGPVRSIDLS----RI----DALDVRPISIDDFRDALKTVRPSVCQADF 221 (343)
Q Consensus 158 ~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~----~~----~~~~~~~i~~~d~~~a~~~~~ps~~~k~~ 221 (343)
+.+++.+.|||++||.++|+.|.+.++++.... .+ ...-..+++.+||..|+++++||++.+++
T Consensus 407 ~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~ 478 (491)
T KOG0738|consen 407 EDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVSAADL 478 (491)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCCHHHH
Confidence 999999999999999999999999999864221 11 11123679999999999999999876543
No 8
>KOG0730|consensus
Probab=100.00 E-value=8.4e-39 Score=298.42 Aligned_cols=210 Identities=39% Similarity=0.644 Sum_probs=194.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
||||||||||||++||++|++.+++|+.+.+.++.++|+|++++.++.+|+.++...|||+|+||+|++...++.+....
T Consensus 471 VLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v 550 (693)
T KOG0730|consen 471 VLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGV 550 (693)
T ss_pred EEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccch
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999997666688
Q ss_pred HHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHH
Q psy4538 81 SRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIE 158 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~ 158 (343)
..|++++++.+|++... ..+|+||++||+|+.+|+++.| ||+..|++|+|+.+.|.+|++.++++.+..-+ .++.
T Consensus 551 ~~RVlsqLLtEmDG~e~--~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~-vdl~ 627 (693)
T KOG0730|consen 551 TDRVLSQLLTEMDGLEA--LKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSED-VDLE 627 (693)
T ss_pred HHHHHHHHHHHcccccc--cCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCcc-ccHH
Confidence 99999999999999987 6789999999999999999999 99999999999999999999999998654433 4899
Q ss_pred HHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCCCccccc
Q psy4538 159 EVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRPSVCQAD 220 (343)
Q Consensus 159 ~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ps~~~k~ 220 (343)
.||+.|.|||++||..+|++|+..|+++.. ....|+++||.++++..+++.+..+
T Consensus 628 ~La~~T~g~SGAel~~lCq~A~~~a~~e~i-------~a~~i~~~hf~~al~~~r~s~~~~~ 682 (693)
T KOG0730|consen 628 ELAQATEGYSGAEIVAVCQEAALLALRESI-------EATEITWQHFEEALKAVRPSLTSEL 682 (693)
T ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHHhc-------ccccccHHHHHHHHHhhcccCCHHH
Confidence 999999999999999999999999988732 3567999999999999999977654
No 9
>KOG0733|consensus
Probab=100.00 E-value=1.4e-38 Score=293.27 Aligned_cols=218 Identities=40% Similarity=0.645 Sum_probs=194.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
||||||||||||.||+++|++.|.+|+.|...++.++|+|+++..++.+|..|+.+.|||||+||+|.|.+.++++....
T Consensus 548 vLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~ 627 (802)
T KOG0733|consen 548 VLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSV 627 (802)
T ss_pred eEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred HHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCC-ChhhH
Q psy4538 81 SRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSL-TVDDI 157 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~-~~~~~ 157 (343)
+.|+.++|+.+|+++.. ...|+||++||+|+-+|++++| ||+..+++++|+.++|.+|++...++....+ ++.++
T Consensus 628 s~RvvNqLLtElDGl~~--R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl 705 (802)
T KOG0733|consen 628 SSRVVNQLLTELDGLEE--RRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDL 705 (802)
T ss_pred HHHHHHHHHHHhccccc--ccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCH
Confidence 99999999999999977 6679999999999999999999 9999999999999999999999999644444 45589
Q ss_pred HHHHHHCC--CCCHHHHHHHHHHHhcccccccccc---cccccCC----cccChhHHHHHHHhcCCCccccc
Q psy4538 158 EEVGRMTT--DFSGADMASLCREASLGPVRSIDLS---RIDALDV----RPISIDDFRDALKTVRPSVCQAD 220 (343)
Q Consensus 158 ~~la~~t~--g~s~~dl~~l~~~a~~~a~~~~~~~---~~~~~~~----~~i~~~d~~~a~~~~~ps~~~k~ 220 (343)
+.+++.+. |||++||..+|++|...|+++.... ....... -.++..||.+++++++||++.++
T Consensus 706 ~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~d 777 (802)
T KOG0733|consen 706 DEIARNTKCEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERD 777 (802)
T ss_pred HHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCccHHH
Confidence 99998876 9999999999999999998763221 1111111 24788899999999999987654
No 10
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-38 Score=301.08 Aligned_cols=297 Identities=40% Similarity=0.626 Sum_probs=246.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
++++||||+|||.++++++.+ +..+..++.....+++.+..+..++.+|..+....|+++++|++|.+.+.+.......
T Consensus 21 v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~~~~~~~~~~~~~~~~ 99 (494)
T COG0464 21 VLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDEIDALAPKRSSDQGEV 99 (494)
T ss_pred ceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeechhhhcccCccccccch
Confidence 578999999999999999999 7666888889999999999999999999999999999999999999998887755567
Q ss_pred HHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHH
Q psy4538 81 SRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIE 158 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~ 158 (343)
..++...++..+++.. ... +++++.+|.+..+++++++ ||...+.+..|+...+.+++.......... .+....
T Consensus 100 ~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~-~~~~~~ 175 (494)
T COG0464 100 ERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLG-PPGTGK 175 (494)
T ss_pred hhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCc-ccccHH
Confidence 7888899999999888 455 8888899999999999998 999999999999999988888776654332 255789
Q ss_pred HHHHHCCCCCHHHHHHHHHHHhcccccccc---cc--------------cc-----cccCCcccChhHH------HHHH-
Q psy4538 159 EVGRMTTDFSGADMASLCREASLGPVRSID---LS--------------RI-----DALDVRPISIDDF------RDAL- 209 (343)
Q Consensus 159 ~la~~t~g~s~~dl~~l~~~a~~~a~~~~~---~~--------------~~-----~~~~~~~i~~~d~------~~a~- 209 (343)
.++..+.|++++++..++..+...+.++.. .. .. .......++|.|+ ...+
T Consensus 176 ~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~diggl~~~k~~l~ 255 (494)
T COG0464 176 TLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPSRGVLFEDEDVTLDDIGGLEEAKEELK 255 (494)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcccccccCCCCcceehhhcHHHHHHHHH
Confidence 999999999999999999887666655521 00 00 0012233455543 1111
Q ss_pred -------------H-----------hcCCCccccccc-----------------------------------------cC
Q psy4538 210 -------------K-----------TVRPSVCQADFV-----------------------------------------HQ 224 (343)
Q Consensus 210 -------------~-----------~~~ps~~~k~~~-----------------------------------------~~ 224 (343)
. -+.|++|||+++ .+
T Consensus 256 e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~ 335 (494)
T COG0464 256 EAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLA 335 (494)
T ss_pred HHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCC
Confidence 1 123788998873 36
Q ss_pred cceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEeccCCCCC
Q psy4538 225 PSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQ 302 (343)
Q Consensus 225 p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~~P~~~ 302 (343)
||||||||+|++++.|+++.++..+|+++|||++|||++...+ |+||+|||+|+.||||++| |||+++|||+||.+
T Consensus 336 p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~--v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 336 PSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEG--VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCc--eEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 9999999999999999999888889999999999999998666 9999999999999999999 99999999999987
Q ss_pred CC
Q psy4538 303 KV 304 (343)
Q Consensus 303 ~r 304 (343)
+|
T Consensus 414 ~r 415 (494)
T COG0464 414 ER 415 (494)
T ss_pred HH
Confidence 64
No 11
>KOG0739|consensus
Probab=100.00 E-value=1.1e-37 Score=265.35 Aligned_cols=220 Identities=47% Similarity=0.809 Sum_probs=199.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
||||||||||||+||+++|.+.+..|+.|+.+++.++|.|++++.++++|+.++.+.|+||||||||.+++.+++++++.
T Consensus 169 iLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEsea 248 (439)
T KOG0739|consen 169 ILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEA 248 (439)
T ss_pred EEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHHHH
Q psy4538 81 SRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEV 160 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~l 160 (343)
++|+..+|+..|++... .+..++|+++||.||.+|.+++|||...|++|.|+...|..+++.++...+..+++.++..|
T Consensus 249 sRRIKTEfLVQMqGVG~-d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL 327 (439)
T KOG0739|consen 249 SRRIKTEFLVQMQGVGN-DNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKEL 327 (439)
T ss_pred HHHHHHHHHHhhhcccc-CCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHH
Confidence 99999999999999865 46789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHhcccccccccc-------------cc------------------------cccCCcccChh
Q psy4538 161 GRMTTDFSGADMASLCREASLGPVRSIDLS-------------RI------------------------DALDVRPISID 203 (343)
Q Consensus 161 a~~t~g~s~~dl~~l~~~a~~~a~~~~~~~-------------~~------------------------~~~~~~~i~~~ 203 (343)
++.|.||+++||.-+++.|.+..+|+.... .+ +..-.+++++.
T Consensus 328 ~~kTeGySGsDisivVrDalmePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~ 407 (439)
T KOG0739|consen 328 ARKTEGYSGSDISIVVRDALMEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMR 407 (439)
T ss_pred HhhcCCCCcCceEEEehhhhhhhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHH
Confidence 999999999999999988887777653110 00 11124568999
Q ss_pred HHHHHHHhcCCCcccccc
Q psy4538 204 DFRDALKTVRPSVCQADF 221 (343)
Q Consensus 204 d~~~a~~~~~ps~~~k~~ 221 (343)
||..++.+.+|.+...++
T Consensus 408 D~~k~l~~tkPTvn~~Dl 425 (439)
T KOG0739|consen 408 DFLKSLSRTKPTVNEDDL 425 (439)
T ss_pred HHHHHHhhcCCCCCHHHH
Confidence 999999999999876554
No 12
>KOG0734|consensus
Probab=100.00 E-value=4e-35 Score=266.80 Aligned_cols=201 Identities=36% Similarity=0.589 Sum_probs=185.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
|||.||||||||.|||++|.+.++||++.+.+++-..++|.+.++++.+|..++.+.||||||||+|.+..++.......
T Consensus 340 VLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y 419 (752)
T KOG0734|consen 340 VLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHY 419 (752)
T ss_pred eEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999887776668
Q ss_pred HHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHH
Q psy4538 81 SRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIE 158 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~ 158 (343)
.+..+++++.+|+++.+ +..|+||++||.|+.+|+++.| ||+..|.+|.||...|.+|++.++.+.... .+.+..
T Consensus 420 ~kqTlNQLLvEmDGF~q--NeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~-~~VD~~ 496 (752)
T KOG0734|consen 420 AKQTLNQLLVEMDGFKQ--NEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLD-EDVDPK 496 (752)
T ss_pred HHHHHHHHHHHhcCcCc--CCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcc-cCCCHh
Confidence 88899999999999987 6789999999999999999999 999999999999999999999999986543 345788
Q ss_pred HHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcC
Q psy4538 159 EVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVR 213 (343)
Q Consensus 159 ~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 213 (343)
.+|+-|.||+++||.+++++|+..|... +...+++.+++.+-.++-
T Consensus 497 iiARGT~GFsGAdLaNlVNqAAlkAa~d---------ga~~VtM~~LE~akDrIl 542 (752)
T KOG0734|consen 497 IIARGTPGFSGADLANLVNQAALKAAVD---------GAEMVTMKHLEFAKDRIL 542 (752)
T ss_pred HhccCCCCCchHHHHHHHHHHHHHHHhc---------CcccccHHHHhhhhhhee
Confidence 9999999999999999999999888766 567799999988877764
No 13
>KOG0736|consensus
Probab=100.00 E-value=9.9e-35 Score=274.11 Aligned_cols=220 Identities=34% Similarity=0.582 Sum_probs=192.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCC--ch
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQ--EN 78 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~--~~ 78 (343)
||||||||||||.+|||+|.+++..|+.|...++.++|+|+++++++.+|++|+..+|||||+||+|+++++++.+ ..
T Consensus 708 ILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSG 787 (953)
T KOG0736|consen 708 ILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSG 787 (953)
T ss_pred eEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCcc
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999998643 34
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCC-CHHHHHHHHHHHHhhhCCCCChh
Q psy4538 79 ETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLP-DEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 79 ~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P-~~~er~~il~~~l~~~~~~~~~~ 155 (343)
+...|++.+++.++++++..+...|+|||+||+|+.+||++.| ||+.-+++.++ +.+.+..++++..+++....+.
T Consensus 788 GVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedV- 866 (953)
T KOG0736|consen 788 GVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDV- 866 (953)
T ss_pred ccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCc-
Confidence 6789999999999999998778899999999999999999999 99999999887 5677788999998887655443
Q ss_pred hHHHHHHHC-CCCCHHHHHHHHHHHhccccccccccc--------ccccCCcccChhHHHHHHHhcCCCcccccc
Q psy4538 156 DIEEVGRMT-TDFSGADMASLCREASLGPVRSIDLSR--------IDALDVRPISIDDFRDALKTVRPSVCQADF 221 (343)
Q Consensus 156 ~~~~la~~t-~g~s~~dl~~l~~~a~~~a~~~~~~~~--------~~~~~~~~i~~~d~~~a~~~~~ps~~~k~~ 221 (343)
++..+|+.+ ..||++|+.++|..|.+.|+++....- ......-.++++||.++.+++.||.+.+++
T Consensus 867 dL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL 941 (953)
T KOG0736|consen 867 DLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQEL 941 (953)
T ss_pred CHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcccHHHH
Confidence 678888776 578999999999999999998742211 111223458999999999999999887664
No 14
>KOG0737|consensus
Probab=100.00 E-value=1.6e-34 Score=253.90 Aligned_cols=214 Identities=46% Similarity=0.777 Sum_probs=193.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
||||||||||||.+|+++|++.|.+|+.|+.+.+.++|.|+.++.++.+|..+...+|+|+||||+|+++..++..+.+.
T Consensus 130 iLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa 209 (386)
T KOG0737|consen 130 ILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEA 209 (386)
T ss_pred ceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999988778888
Q ss_pred HHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHHHH
Q psy4538 81 SRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEV 160 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~l 160 (343)
...+.++|+..++++....+.+|+|+|+||+|..+|.+++||+...++++.|+..+|++|++-+++..... ++.++..+
T Consensus 210 ~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~i 288 (386)
T KOG0737|consen 210 TAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEI 288 (386)
T ss_pred HHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHH
Confidence 89999999999999999888889999999999999999999999999999999999999999999886544 55689999
Q ss_pred HHHCCCCCHHHHHHHHHHHhccccccccccc-----cc--------------ccCCcccChhHHHHHHHhcCCC
Q psy4538 161 GRMTTDFSGADMASLCREASLGPVRSIDLSR-----ID--------------ALDVRPISIDDFRDALKTVRPS 215 (343)
Q Consensus 161 a~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~-----~~--------------~~~~~~i~~~d~~~a~~~~~ps 215 (343)
|+.|.|||++||+++|+.|++..++...... .+ ....++++++||..+..++.++
T Consensus 289 A~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~ 362 (386)
T KOG0737|consen 289 AQMTEGYSGSDLKELCRLAALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSAS 362 (386)
T ss_pred HHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhH
Confidence 9999999999999999999988877642221 11 1125889999999999987766
No 15
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.7e-34 Score=241.67 Aligned_cols=203 Identities=30% Similarity=0.522 Sum_probs=181.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCC-chh
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQ-ENE 79 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~-~~~ 79 (343)
||||||||||||++|+++|++.+.|++.+++.++.+.++|.....++.++..++..+|||+||||+|.+.-.+.-+ ..+
T Consensus 154 VLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRG 233 (368)
T COG1223 154 VLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRG 233 (368)
T ss_pred eEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcc
Confidence 6999999999999999999999999999999999999999999999999999999999999999999997665422 233
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHHH
Q psy4538 80 TSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEE 159 (343)
Q Consensus 80 ~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~ 159 (343)
....+++.|+.+|++... +..|+.|++||+++.+|+++++||...|+|..|+.++|.+|++.+++..+...+. .++.
T Consensus 234 DVsEiVNALLTelDgi~e--neGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~-~~~~ 310 (368)
T COG1223 234 DVSEIVNALLTELDGIKE--NEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDA-DLRY 310 (368)
T ss_pred cHHHHHHHHHHhccCccc--CCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcccc-CHHH
Confidence 456788999999999986 7789999999999999999999999999999999999999999999998877765 5999
Q ss_pred HHHHCCCCCHHHHHH-HHHHHhcccccccccccccccCCcccChhHHHHHHHhcCCC
Q psy4538 160 VGRMTTDFSGADMAS-LCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRPS 215 (343)
Q Consensus 160 la~~t~g~s~~dl~~-l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ps 215 (343)
++..+.|+|++||.. ++..|...|+.. +...++.+|+..++++-++.
T Consensus 311 ~~~~t~g~SgRdikekvlK~aLh~Ai~e---------d~e~v~~edie~al~k~r~~ 358 (368)
T COG1223 311 LAAKTKGMSGRDIKEKVLKTALHRAIAE---------DREKVEREDIEKALKKERKR 358 (368)
T ss_pred HHHHhCCCCchhHHHHHHHHHHHHHHHh---------chhhhhHHHHHHHHHhhccc
Confidence 999999999999974 667777777765 56779999999999975544
No 16
>KOG0740|consensus
Probab=100.00 E-value=2.5e-33 Score=254.90 Aligned_cols=220 Identities=58% Similarity=0.914 Sum_probs=205.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
+||.||||+|||+|++++|.+.+..|+.++++.+.++|+|+++..++.+|..|+..+|+|+||||+|.++.++++...+.
T Consensus 189 lLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~ 268 (428)
T KOG0740|consen 189 LLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHES 268 (428)
T ss_pred hheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCccccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHHHH
Q psy4538 81 SRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEV 160 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~l 160 (343)
..++..+++..+.+.......+|++||+||.||.+|+++++||...+++|.|+.+.|..+|..+++..+..+...++..+
T Consensus 269 srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l 348 (428)
T KOG0740|consen 269 SRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLL 348 (428)
T ss_pred chhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHH
Confidence 99999999999999888888899999999999999999999999999999999999999999999998888888999999
Q ss_pred HHHCCCCCHHHHHHHHHHHhccccccccc----ccccccCCcccChhHHHHHHHhcCCCccccc
Q psy4538 161 GRMTTDFSGADMASLCREASLGPVRSIDL----SRIDALDVRPISIDDFRDALKTVRPSVCQAD 220 (343)
Q Consensus 161 a~~t~g~s~~dl~~l~~~a~~~a~~~~~~----~~~~~~~~~~i~~~d~~~a~~~~~ps~~~k~ 220 (343)
++.|.||+++||.++|..|++...+.... ........++++..||..+++.++|+++...
T Consensus 349 ~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~ 412 (428)
T KOG0740|consen 349 AKVTEGYSGSDITALCKEAAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSVSLEG 412 (428)
T ss_pred HHHhcCcccccHHHHHHHhhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhccccCccc
Confidence 99999999999999999999888776433 2345667889999999999999999976544
No 17
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=7.3e-33 Score=261.45 Aligned_cols=202 Identities=26% Similarity=0.398 Sum_probs=180.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCC-CCchh
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRS-DQENE 79 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~-~~~~~ 79 (343)
||||||||||||++|+++|++++.+++.++++.+.+++.|+++..++.+|..+...+||||+|||+|.++.+.. .+...
T Consensus 262 ILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~ 341 (489)
T CHL00195 262 LLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSG 341 (489)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCch
Confidence 68999999999999999999999999999999999999999999999999999999999999999999987543 33445
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCC-CChhh
Q psy4538 80 TSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNS-LTVDD 156 (343)
Q Consensus 80 ~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~~ 156 (343)
...+++..++..++.. ..++++|+|||.++.+|++++| ||+..++++.|+.++|.+||+.++++.... ..+.+
T Consensus 342 ~~~rvl~~lL~~l~~~----~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~d 417 (489)
T CHL00195 342 TTNRVLATFITWLSEK----KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYD 417 (489)
T ss_pred HHHHHHHHHHHHHhcC----CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccC
Confidence 6778888888888753 5579999999999999999988 999999999999999999999999886433 34668
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCCCc
Q psy4538 157 IEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRPSV 216 (343)
Q Consensus 157 ~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ps~ 216 (343)
+..+++.|.|||++||+++|.+|...|..+ .++++.+||..+++.+.|+.
T Consensus 418 l~~La~~T~GfSGAdI~~lv~eA~~~A~~~----------~~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 418 IKKLSKLSNKFSGAEIEQSIIEAMYIAFYE----------KREFTTDDILLALKQFIPLA 467 (489)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHc----------CCCcCHHHHHHHHHhcCCCc
Confidence 999999999999999999999998877654 36799999999999999974
No 18
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-32 Score=259.65 Aligned_cols=207 Identities=47% Similarity=0.754 Sum_probs=190.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
+|||||||||||++|+++|.+++.+|+.+..+++.++|.|++++.++.+|..++..+||||||||+|++++.++.+....
T Consensus 279 iLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~ 358 (494)
T COG0464 279 VLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGS 358 (494)
T ss_pred eEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999998776666
Q ss_pred HHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCC-CChhhH
Q psy4538 81 SRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNS-LTVDDI 157 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~~~ 157 (343)
..++..+++..+++... ...|++|++||.++.+|+++++ ||+..+++++|+..+|.++++.+++..... ..+.++
T Consensus 359 ~~r~~~~lL~~~d~~e~--~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~ 436 (494)
T COG0464 359 GRRVVGQLLTELDGIEK--AEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDL 436 (494)
T ss_pred HHHHHHHHHHHhcCCCc--cCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhH
Confidence 68999999999998876 5569999999999999999999 999999999999999999999999865543 456689
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCCCcc
Q psy4538 158 EEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRPSVC 217 (343)
Q Consensus 158 ~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ps~~ 217 (343)
+.+++.+.||+++||..+|++|.+.+.++.. ...++.+||..++++.+|+.+
T Consensus 437 ~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~--------~~~~~~~~~~~a~~~~~p~~~ 488 (494)
T COG0464 437 EELAEITEGYSGADIAALVREAALEALREAR--------RREVTLDDFLDALKKIKPSVT 488 (494)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc--------cCCccHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999987731 467999999999999999865
No 19
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1e-31 Score=254.09 Aligned_cols=311 Identities=31% Similarity=0.432 Sum_probs=244.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCC---Cc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSD---QE 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~---~~ 77 (343)
+||+||||||||.||+++|.+.+.||+.++.+++...++|-+.+.++.+|.+++.++|||+||||+|.+..++.. +.
T Consensus 186 vlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~Ggg 265 (596)
T COG0465 186 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGG 265 (596)
T ss_pred eeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999887752 34
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
+......+++++.+|+++.. +..|+++++||+|+-+|+++.| ||+..|.++.|+...|++|++-++++.... ...
T Consensus 266 nderEQTLNQlLvEmDGF~~--~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~V 342 (596)
T COG0465 266 NDEREQTLNQLLVEMDGFGG--NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDV 342 (596)
T ss_pred chHHHHHHHHHHhhhccCCC--CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcC
Confidence 55667789999999999974 6789999999999999999999 999999999999999999999888887655 445
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcC--CCcccccc------------
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVR--PSVCQADF------------ 221 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~--ps~~~k~~------------ 221 (343)
++..+|+.|+||+++|+.+++++|+..+.++ ....+++.||.++..++- |......+
T Consensus 343 dl~~iAr~tpGfsGAdL~nl~NEAal~aar~---------n~~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhE 413 (596)
T COG0465 343 DLKKIARGTPGFSGADLANLLNEAALLAARR---------NKKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHE 413 (596)
T ss_pred CHHHHhhhCCCcccchHhhhHHHHHHHHHHh---------cCeeEeccchHHHHHHHhcCcCcCCcccChhhhcchHHHH
Confidence 7888999999999999999999999999887 567899999999999864 32222211
Q ss_pred -ccCcceEeecchhhhhc----ccC------------CCcchhHHHHHHHHHHhhcCCCCCCC---CcEEEEeecCCccc
Q psy4538 222 -VHQPSIIFIDEIDSLLC----QRS------------DQENETSRRLKTEFLISLDGASTLDD---DLVLVIGATNRPQE 281 (343)
Q Consensus 222 -~~~p~ilf~DEiDsl~~----~R~------------~~~~~~~~r~v~~lL~~mdg~~~~~~---~~v~vi~aTN~~~~ 281 (343)
.++.+-+++++.|.+.. .|| +...-....+.+++-..|.|..+..- . -+.-+|+|..+.
T Consensus 414 aghalv~~~l~~~d~v~KvtIiPrG~alG~t~~~Pe~d~~l~sk~~l~~~i~~~lgGRaAEel~~g~-e~ttGa~~D~~~ 492 (596)
T COG0465 414 AGHALVGLLLPDADPVHKVTIIPRGRALGYTLFLPEEDKYLMSKEELLDRIDVLLGGRAAEELIFGY-EITTGASNDLEK 492 (596)
T ss_pred HHHHHHHHhCCCCcccceeeeccCchhhcchhcCCccccccccHHHHHHHHHHHhCCcHhhhhhhcc-cccccchhhHHH
Confidence 13456667777775531 122 01112335677888888887654110 0 134567777776
Q ss_pred ccHHHHH---hhhceEeccC--CCC----------CCCCCCchhHHHHhhhhhhhhhh
Q psy4538 282 LDEAARR---RLVKRLYIPL--PDE----------QKVPGSNPTMDKIDQENETSRRL 324 (343)
Q Consensus 282 lD~allR---R~d~~i~~~~--P~~----------~~r~~~~~~~~~~~~~~~~~~~~ 324 (343)
....... +++..-.++. +.. ..+..++.++..||.||+.-...
T Consensus 493 at~~ar~mVt~~Gms~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~ID~evk~ii~~ 550 (596)
T COG0465 493 ATDLARAMVTEYGMSAKLGPVAYEQVEGVFLGRYQKAKNYSEETAQEIDREVKDIIDE 550 (596)
T ss_pred HHHHHHHhhhhcCcchhhCceehhhcccccccccccccCccHHHHHHHHHHHHHHHHH
Confidence 5333333 7776654433 111 34579999999999999877544
No 20
>KOG0735|consensus
Probab=99.98 E-value=1.5e-31 Score=250.69 Aligned_cols=184 Identities=40% Similarity=0.619 Sum_probs=172.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
||||||||||||.||.++|..++..|+.|...++.++|.|.+++.++.+|..|+..+|||||+||+|+++++++....+.
T Consensus 704 iLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGV 783 (952)
T KOG0735|consen 704 ILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGV 783 (952)
T ss_pred eEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred HHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHH
Q psy4538 81 SRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIE 158 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~ 158 (343)
..|+.++++.+|++... -..|.|+++|.+|+.+||+++| |++..++.+.|++.+|.+|++.+..... ..++.+++
T Consensus 784 TDRVVNQlLTelDG~Eg--l~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~-~~~~vdl~ 860 (952)
T KOG0735|consen 784 TDRVVNQLLTELDGAEG--LDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLL-KDTDVDLE 860 (952)
T ss_pred hHHHHHHHHHhhccccc--cceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccC-CccccchH
Confidence 99999999999999877 5569999999999999999999 9999999999999999999999877653 34566899
Q ss_pred HHHHHCCCCCHHHHHHHHHHHhccccccc
Q psy4538 159 EVGRMTTDFSGADMASLCREASLGPVRSI 187 (343)
Q Consensus 159 ~la~~t~g~s~~dl~~l~~~a~~~a~~~~ 187 (343)
.+|..|.||+++|+..++..|.+.|+.++
T Consensus 861 ~~a~~T~g~tgADlq~ll~~A~l~avh~~ 889 (952)
T KOG0735|consen 861 CLAQKTDGFTGADLQSLLYNAQLAAVHEI 889 (952)
T ss_pred HHhhhcCCCchhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888764
No 21
>KOG0731|consensus
Probab=99.98 E-value=1.3e-31 Score=257.61 Aligned_cols=308 Identities=32% Similarity=0.471 Sum_probs=236.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCC----CC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRS----DQ 76 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~----~~ 76 (343)
+||+||||||||.||+|+|.+.|.||+.++++++...+.|.....++.+|..++.+.|||+||||+|.+..+++ .+
T Consensus 347 vLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~ 426 (774)
T KOG0731|consen 347 VLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGG 426 (774)
T ss_pred eEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999988874 23
Q ss_pred chhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCCh
Q psy4538 77 ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTV 154 (343)
Q Consensus 77 ~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~ 154 (343)
........+++++.+|++... ...|+++++||+++.+|++++| ||+..|.++.|+..+|.+|++.++++.....++
T Consensus 427 ~~~e~e~tlnQll~emDgf~~--~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~ 504 (774)
T KOG0731|consen 427 GQDEREQTLNQLLVEMDGFET--SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDED 504 (774)
T ss_pred CChHHHHHHHHHHHHhcCCcC--CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcch
Confidence 455667789999999999977 5779999999999999999999 999999999999999999999999987766667
Q ss_pred hhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCCCcccccc-------------
Q psy4538 155 DDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRPSVCQADF------------- 221 (343)
Q Consensus 155 ~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ps~~~k~~------------- 221 (343)
.++..+|..|.||+++||.++|++|+..|.++ ....|+..||..+++++......+..
T Consensus 505 ~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~---------~~~~i~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~ 575 (774)
T KOG0731|consen 505 VDLSKLASLTPGFSGADLANLCNEAALLAARK---------GLREIGTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYH 575 (774)
T ss_pred hhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHh---------ccCccchhhHHHHHHHHhccccccchhcCHhhhhhhhhh
Confidence 78888999999999999999999999999887 56789999999999966543222111
Q ss_pred --ccCcceEeecchhhh-----hcccC---------CCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEe------ecCCc
Q psy4538 222 --VHQPSIIFIDEIDSL-----LCQRS---------DQENETSRRLKTEFLISLDGASTLDDDLVLVIG------ATNRP 279 (343)
Q Consensus 222 --~~~p~ilf~DEiDsl-----~~~R~---------~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~------aTN~~ 279 (343)
-+++|=-|.|..|.+ .+..+ ++.-..-..+++++..-|-|-.. . .++++ |.+..
T Consensus 576 eagha~~g~~l~~~dpl~kvsIiPGqalG~a~~~P~~~~l~sk~ql~~rm~m~LGGRaA--E--ev~fg~~iTtga~ddl 651 (774)
T KOG0731|consen 576 EAGHAVVGWLLEHADPLLKVSIIPGQALGYAQYLPTDDYLLSKEQLFDRMVMALGGRAA--E--EVVFGSEITTGAQDDL 651 (774)
T ss_pred hccchhhhccccccCcceeEEeccCCccceEEECCcccccccHHHHHHHHHHHhCcchh--h--heecCCccCchhhccH
Confidence 134554455777733 23111 11122335677777777777544 2 13333 33333
Q ss_pred ccccHHHHH---hhh---ceEeccCCCCC------CCCCCchhHHHHhhhhhhhhh
Q psy4538 280 QELDEAARR---RLV---KRLYIPLPDEQ------KVPGSNPTMDKIDQENETSRR 323 (343)
Q Consensus 280 ~~lD~allR---R~d---~~i~~~~P~~~------~r~~~~~~~~~~~~~~~~~~~ 323 (343)
+.+....-- +|- ++-.+.+|.-. ..|++..++..||.+|+.=.+
T Consensus 652 ~kvT~~A~~~V~~~Gms~kig~~~~~~~~~~~~~~~~p~s~~~~~~Id~ev~~lv~ 707 (774)
T KOG0731|consen 652 EKVTKIARAMVASFGMSEKIGPISFQMLLPGDESFRKPYSEKTAQLIDTEVRRLVQ 707 (774)
T ss_pred HHHHHHHHHHHHHcCcccccCceeccCcccccccccCccchhHHHHHHHHHHHHHh
Confidence 333222211 442 33333333322 489999999999999876543
No 22
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.97 E-value=5.6e-31 Score=243.77 Aligned_cols=202 Identities=39% Similarity=0.606 Sum_probs=177.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCC---c
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQ---E 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~---~ 77 (343)
+|||||||||||++|+++|++++.+++.+.++.+..++.|++...++.+|..+...+|+||||||+|.++.++.+. .
T Consensus 182 vLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~ 261 (398)
T PTZ00454 182 VLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGA 261 (398)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999998765322 2
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
+....+.+..++..+++... ..++.+|++||.++.+|+++++ ||+..|+++.|+.++|.+||+.++.+.+.. .+.
T Consensus 262 d~~~~r~l~~LL~~ld~~~~--~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dv 338 (398)
T PTZ00454 262 DREVQRILLELLNQMDGFDQ--TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEV 338 (398)
T ss_pred cHHHHHHHHHHHHHhhccCC--CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-ccc
Confidence 23455677888888887654 4568999999999999999988 999999999999999999999998876543 345
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCC
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRP 214 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~p 214 (343)
++..+++.+.||+++||.++|++|.+.|+++ ....++.+||.+|+.++..
T Consensus 339 d~~~la~~t~g~sgaDI~~l~~eA~~~A~r~---------~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 339 DLEDFVSRPEKISAADIAAICQEAGMQAVRK---------NRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc---------CCCccCHHHHHHHHHHHHh
Confidence 7899999999999999999999999999877 4467999999999998744
No 23
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=3.8e-31 Score=265.23 Aligned_cols=217 Identities=40% Similarity=0.659 Sum_probs=187.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCC-chh
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQ-ENE 79 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~-~~~ 79 (343)
+|||||||||||++|+++|++++.+|+.++++++.++|.|+++..++.+|..++...|+||||||+|.+++.++.. ...
T Consensus 490 iLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~ 569 (733)
T TIGR01243 490 VLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTS 569 (733)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCcc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999877543 234
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhH
Q psy4538 80 TSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDI 157 (343)
Q Consensus 80 ~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~ 157 (343)
...++.++++..+++... ..+++||++||.++.+|++++| ||+..+++|+|+.++|.+||+.+.++.... ++.++
T Consensus 570 ~~~~~~~~lL~~ldg~~~--~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-~~~~l 646 (733)
T TIGR01243 570 VTDRIVNQLLTEMDGIQE--LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-EDVDL 646 (733)
T ss_pred HHHHHHHHHHHHhhcccC--CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-ccCCH
Confidence 567889999999998765 5679999999999999999998 999999999999999999999888765432 44579
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHhccccccccccc----cc-----ccCCcccChhHHHHHHHhcCCCccccc
Q psy4538 158 EEVGRMTTDFSGADMASLCREASLGPVRSIDLSR----ID-----ALDVRPISIDDFRDALKTVRPSVCQAD 220 (343)
Q Consensus 158 ~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~----~~-----~~~~~~i~~~d~~~a~~~~~ps~~~k~ 220 (343)
..+|+.+.||+++||.++|++|+..++++..... .. ......++.+||..++++++|+.+.++
T Consensus 647 ~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~ 718 (733)
T TIGR01243 647 EELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKED 718 (733)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCCCHHH
Confidence 9999999999999999999999988877532110 00 112347999999999999999987654
No 24
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=1.1e-30 Score=243.15 Aligned_cols=207 Identities=39% Similarity=0.636 Sum_probs=178.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCc---
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQE--- 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~--- 77 (343)
+|||||||||||++|+++|++++.+++.++++++...+.|+....++.+|..+....|+||||||+|.++..+.+..
T Consensus 168 vLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~ 247 (389)
T PRK03992 168 VLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSG 247 (389)
T ss_pred eEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCc
Confidence 68999999999999999999999999999999999999999999999999999989999999999999987664332
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
.....+.+..++..+++... ..++.||++||.++.+++++++ ||+..|++++|+.++|.+||+.++++.... .+.
T Consensus 248 ~~~~~~~l~~lL~~ld~~~~--~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~ 324 (389)
T PRK03992 248 DREVQRTLMQLLAEMDGFDP--RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDV 324 (389)
T ss_pred cHHHHHHHHHHHHhccccCC--CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcC
Confidence 22344556667777776543 4579999999999999999997 999999999999999999999998875433 235
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCCCcccc
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRPSVCQA 219 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ps~~~k 219 (343)
++..++..|.||+++||.++|++|.+.|+++ ....|+.+||.+|+..++++...+
T Consensus 325 ~~~~la~~t~g~sgadl~~l~~eA~~~a~~~---------~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 325 DLEELAELTEGASGADLKAICTEAGMFAIRD---------DRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHHHhcccccc
Confidence 7899999999999999999999999999876 346799999999999998875544
No 25
>KOG0741|consensus
Probab=99.97 E-value=4e-31 Score=240.58 Aligned_cols=295 Identities=30% Similarity=0.418 Sum_probs=233.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC-cEEEEecccccccccchHHHHHHHHHHHHHhc--------CCcEEEecccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA-TFFCISASTLTSKWYGEGEKMVRALFAVASVH--------QPSIIFIDEIDSLLC 71 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~-~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~--------~p~vl~iDeid~l~~ 71 (343)
||||||||||||.+||.+.+.++. +--.||..++.++|+|+++..++.+|..|... .=.|+++||+|.++.
T Consensus 259 iLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICK 338 (744)
T KOG0741|consen 259 ILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICK 338 (744)
T ss_pred EEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHH
Confidence 689999999999999999999974 45678999999999999999999999866321 124999999999998
Q ss_pred cCCCC--chhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhh
Q psy4538 72 QRSDQ--ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRN 147 (343)
Q Consensus 72 ~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~ 147 (343)
+++.. .......++++|+..|++..+ -.+++|||-||+.+.+|++++| ||...+++..|++..|.+|++-+.+.
T Consensus 339 qRGS~~g~TGVhD~VVNQLLsKmDGVeq--LNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~r 416 (744)
T KOG0741|consen 339 QRGSMAGSTGVHDTVVNQLLSKMDGVEQ--LNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKR 416 (744)
T ss_pred hcCCCCCCCCccHHHHHHHHHhcccHHh--hhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhh
Confidence 87643 345678899999999999877 5569999999999999999999 99999999999999999999866643
Q ss_pred ---hCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhccccccccccc------ccccCCcccChhHHHHHHHhcCCCc--
Q psy4538 148 ---ITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSR------IDALDVRPISIDDFRDALKTVRPSV-- 216 (343)
Q Consensus 148 ---~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~------~~~~~~~~i~~~d~~~a~~~~~ps~-- 216 (343)
+..--++.+++.||..|..||+++|..+++.|...|+.+....+ ....+.-.++.+||..++..++|..
T Consensus 417 Mre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~ 496 (744)
T KOG0741|consen 417 MRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGI 496 (744)
T ss_pred hhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCC
Confidence 22223556899999999999999999999999888887653322 2233445689999999999988652
Q ss_pred ----------------------------------------------------cccccc----------------------
Q psy4538 217 ----------------------------------------------------CQADFV---------------------- 222 (343)
Q Consensus 217 ----------------------------------------------------~~k~~~---------------------- 222 (343)
+||+-+
T Consensus 497 see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~mi 576 (744)
T KOG0741|consen 497 SEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMI 576 (744)
T ss_pred CHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHcc
Confidence 333321
Q ss_pred --------------------cCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccc
Q psy4538 223 --------------------HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQEL 282 (343)
Q Consensus 223 --------------------~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~l 282 (343)
..-+||.+|+++.|.--- .-+-.+++-++..|+..+..-.. ++.+.+|++||++.+.|
T Consensus 577 G~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~v-pIGPRfSN~vlQaL~VllK~~pp-kg~kLli~~TTS~~~vL 654 (744)
T KOG0741|consen 577 GLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYV-PIGPRFSNLVLQALLVLLKKQPP-KGRKLLIFGTTSRREVL 654 (744)
T ss_pred CccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccc-ccCchhhHHHHHHHHHHhccCCC-CCceEEEEecccHHHHH
Confidence 123699999999886321 11224777888888888877654 44568999999998877
Q ss_pred cH-HHHHhhhceEeccCC
Q psy4538 283 DE-AARRRLVKRLYIPLP 299 (343)
Q Consensus 283 D~-allRR~d~~i~~~~P 299 (343)
-. .++--|+-.++||-=
T Consensus 655 ~~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 655 QEMGILDCFSSTIHVPNL 672 (744)
T ss_pred HHcCHHHhhhheeecCcc
Confidence 43 344499999999753
No 26
>KOG0727|consensus
Probab=99.97 E-value=1.8e-30 Score=216.88 Aligned_cols=201 Identities=38% Similarity=0.612 Sum_probs=179.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccC---CCCc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQR---SDQE 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~---~~~~ 77 (343)
+|+|||||||||+|++++|++....|+.+..+++..+|.|++.+.++.+|+.++.+.|+|+||||+|.++.++ +.+.
T Consensus 192 vllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtga 271 (408)
T KOG0727|consen 192 VLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGA 271 (408)
T ss_pred eEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999998775 3445
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
+....+++-++++.|+++.. ..++-+|.+||+.+.+||++++ |++..|+||.|+..+++-++.....+.... ++.
T Consensus 272 drevqril~ellnqmdgfdq--~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls-~~v 348 (408)
T KOG0727|consen 272 DREVQRILIELLNQMDGFDQ--TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS-DEV 348 (408)
T ss_pred cHHHHHHHHHHHHhccCcCc--ccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC-ccc
Confidence 56778899999999999987 6678899999999999999999 999999999999999999999888775433 445
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcC
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVR 213 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 213 (343)
+++.+..+-...++++|.++|++|.+.|++. ..-.+...||+++.+...
T Consensus 349 dle~~v~rpdkis~adi~aicqeagm~avr~---------nryvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 349 DLEDLVARPDKISGADINAICQEAGMLAVRE---------NRYVVLQKDFEKAYKTVV 397 (408)
T ss_pred CHHHHhcCccccchhhHHHHHHHHhHHHHHh---------cceeeeHHHHHHHHHhhc
Confidence 7888888888899999999999999999987 445688899999987653
No 27
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=1.4e-29 Score=246.21 Aligned_cols=200 Identities=37% Similarity=0.569 Sum_probs=174.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCC---Cc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSD---QE 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~---~~ 77 (343)
+||+||||||||++|+++|++++.+++.++++++...+.+.....++.+|..+....||||||||+|.+...++. +.
T Consensus 219 VLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~ 298 (638)
T CHL00176 219 VLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGG 298 (638)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCC
Confidence 589999999999999999999999999999999988888888888999999999999999999999999866542 22
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
.......+..++..+++... +..+++|++||.++.+|+++++ ||+..+.++.|+.++|.+||+.++++.. ..++.
T Consensus 299 ~~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~-~~~d~ 375 (638)
T CHL00176 299 NDEREQTLNQLLTEMDGFKG--NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK-LSPDV 375 (638)
T ss_pred cHHHHHHHHHHHhhhccccC--CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc-cchhH
Confidence 34456677888888887754 5679999999999999999998 9999999999999999999999998743 23455
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhc
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTV 212 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 212 (343)
++..+++.+.||+++||.+++++|+..+.++ ....++.+||..++.++
T Consensus 376 ~l~~lA~~t~G~sgaDL~~lvneAal~a~r~---------~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 376 SLELIARRTPGFSGADLANLLNEAAILTARR---------KKATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh---------CCCCcCHHHHHHHHHHH
Confidence 7899999999999999999999998877665 45679999999999876
No 28
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=9.8e-30 Score=244.52 Aligned_cols=202 Identities=40% Similarity=0.605 Sum_probs=177.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCC---c
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQ---E 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~---~ 77 (343)
+|||||||||||++|+++|++++.+++.++++++.+.+.+.+.+.++.+|..++...|+||||||+|.+..+++.+ .
T Consensus 91 iLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~ 170 (495)
T TIGR01241 91 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGG 170 (495)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCc
Confidence 5899999999999999999999999999999999999889999999999999998999999999999998776542 2
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
.....+.++.++..+++... ...++||++||.++.+|++++| ||+..++++.|+.++|.+||+.++++.... ++.
T Consensus 171 ~~~~~~~~~~lL~~~d~~~~--~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~ 247 (495)
T TIGR01241 171 NDEREQTLNQLLVEMDGFGT--NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDV 247 (495)
T ss_pred cHHHHHHHHHHHhhhccccC--CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cch
Confidence 34456778889999988755 5569999999999999999998 999999999999999999999999875433 455
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCC
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRP 214 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~p 214 (343)
++..+++.+.||+++||.++|++|+..+.++ ....++.+||..++.++..
T Consensus 248 ~l~~la~~t~G~sgadl~~l~~eA~~~a~~~---------~~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 248 DLKAVARRTPGFSGADLANLLNEAALLAARK---------NKTEITMNDIEEAIDRVIA 297 (495)
T ss_pred hHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc---------CCCCCCHHHHHHHHHHHhc
Confidence 7889999999999999999999998777665 3467999999999987643
No 29
>KOG0728|consensus
Probab=99.97 E-value=6.6e-30 Score=213.32 Aligned_cols=205 Identities=37% Similarity=0.572 Sum_probs=179.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCC---c
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQ---E 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~---~ 77 (343)
+|||||||+|||.+|+++|++..+.|+.++.+++..+|.|++.+.++.+|-.++.+.|+|+|+||||++...+.++ .
T Consensus 184 vlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~gg 263 (404)
T KOG0728|consen 184 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGG 263 (404)
T ss_pred eEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999998776543 3
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
+....+..-++++.++++.. ..++-+|.+||+.+-+|+++++ |.+..|+||+|+.+.|.+|++-+.++.... ...
T Consensus 264 dsevqrtmlellnqldgfea--tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~-rgi 340 (404)
T KOG0728|consen 264 DSEVQRTMLELLNQLDGFEA--TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT-RGI 340 (404)
T ss_pred cHHHHHHHHHHHHhcccccc--ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh-ccc
Confidence 34456666778888888876 5668889999999999999999 999999999999999999999887664322 334
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCCCcc
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRPSVC 217 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ps~~ 217 (343)
++..+|+...|.++++++.+|.+|.+.|++. ..-.+|.+||+-|+.++-...+
T Consensus 341 ~l~kiaekm~gasgaevk~vcteagm~alre---------rrvhvtqedfemav~kvm~k~~ 393 (404)
T KOG0728|consen 341 NLRKIAEKMPGASGAEVKGVCTEAGMYALRE---------RRVHVTQEDFEMAVAKVMQKDS 393 (404)
T ss_pred CHHHHHHhCCCCccchhhhhhhhhhHHHHHH---------hhccccHHHHHHHHHHHHhccc
Confidence 7899999999999999999999999999987 3467999999999987754433
No 30
>KOG0652|consensus
Probab=99.97 E-value=3.7e-30 Score=216.01 Aligned_cols=201 Identities=40% Similarity=0.638 Sum_probs=180.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCch--
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQEN-- 78 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~-- 78 (343)
+|+|||||||||.+||++|.+.+..|+.+-..++...|.|.+.+.++..|..++...|+|+||||+|.+..++.+++.
T Consensus 208 vLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~G 287 (424)
T KOG0652|consen 208 VLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAG 287 (424)
T ss_pred eEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999888765433
Q ss_pred -hHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 79 -ETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 79 -~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
....+..-++++.++++++ ...+-+|++||+.+-+||++.| |++..|+||.|+.+.|..|++-+.++.. .-++.
T Consensus 288 DREVQRTMLELLNQLDGFss--~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMn-v~~Dv 364 (424)
T KOG0652|consen 288 DREVQRTMLELLNQLDGFSS--DDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMN-VSDDV 364 (424)
T ss_pred cHHHHHHHHHHHHhhcCCCC--ccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcC-CCCCC
Confidence 3345556677888888876 7789999999999999999988 9999999999999999999998887754 34556
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcC
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVR 213 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 213 (343)
+++.|++.|.+|++++.+++|.+|.+.|+++ +...++.+||.+++..+.
T Consensus 365 NfeELaRsTddFNGAQcKAVcVEAGMiALRr---------~atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 365 NFEELARSTDDFNGAQCKAVCVEAGMIALRR---------GATEVTHEDFMEGILEVQ 413 (424)
T ss_pred CHHHHhhcccccCchhheeeehhhhHHHHhc---------ccccccHHHHHHHHHHHH
Confidence 8999999999999999999999999999998 667899999999887664
No 31
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=1.8e-29 Score=235.17 Aligned_cols=201 Identities=40% Similarity=0.593 Sum_probs=174.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCC---c
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQ---E 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~---~ 77 (343)
+|||||||||||++|+++|++++.+++.+..+++...+.|+....++.+|..+....|+||||||+|.++.++... .
T Consensus 220 VLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg 299 (438)
T PTZ00361 220 VILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGG 299 (438)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcc
Confidence 5899999999999999999999999999999999999999999999999999998999999999999998765432 2
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
.....+.+..++..+++... ...+.||++||.++.+++++.+ ||+..|+|+.|+.++|.+||+.++.+.... .+.
T Consensus 300 ~~e~qr~ll~LL~~Ldg~~~--~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-~dv 376 (438)
T PTZ00361 300 EKEIQRTMLELLNQLDGFDS--RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-EDV 376 (438)
T ss_pred cHHHHHHHHHHHHHHhhhcc--cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-cCc
Confidence 22344556677777877654 4568999999999999999987 999999999999999999999988775432 344
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcC
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVR 213 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 213 (343)
++..++..+.|++++||.++|++|++.|+++ ....|+.+||..|+.++.
T Consensus 377 dl~~la~~t~g~sgAdI~~i~~eA~~~Alr~---------~r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 377 DLEEFIMAKDELSGADIKAICTEAGLLALRE---------RRMKVTQADFRKAKEKVL 425 (438)
T ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---------cCCccCHHHHHHHHHHHH
Confidence 7899999999999999999999999999877 456799999999999874
No 32
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=1.2e-28 Score=242.38 Aligned_cols=203 Identities=36% Similarity=0.576 Sum_probs=178.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCC---c
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQ---E 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~---~ 77 (343)
++|+||||||||+++++++++++.+++.++++++...+.+.....++.+|..+....|+||||||+|.+..+++.+ .
T Consensus 188 ill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~ 267 (644)
T PRK10733 188 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG 267 (644)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCC
Confidence 5899999999999999999999999999999999988888888899999999998899999999999998776532 2
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
.......++.++..+++... ...+++|++||+++.+|+++++ ||+..+.++.|+.++|.+||+.++++.+.. .+.
T Consensus 268 ~~~~~~~ln~lL~~mdg~~~--~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-~~~ 344 (644)
T PRK10733 268 HDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDI 344 (644)
T ss_pred chHHHHHHHHHHHhhhcccC--CCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-CcC
Confidence 34456778889999988765 5679999999999999999998 999999999999999999999999876533 234
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCCC
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRPS 215 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ps 215 (343)
++..+++.+.||+++||.++|++|+..|.++ +...++..||.+++.++.++
T Consensus 345 d~~~la~~t~G~sgadl~~l~~eAa~~a~r~---------~~~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 345 DAAIIARGTPGFSGADLANLVNEAALFAARG---------NKRVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc---------CCCcccHHHHHHHHHHHhcc
Confidence 6888999999999999999999999888765 45679999999999877654
No 33
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=7.4e-29 Score=254.15 Aligned_cols=198 Identities=21% Similarity=0.218 Sum_probs=162.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccc-----------------------------------------c
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKW-----------------------------------------Y 39 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~-----------------------------------------~ 39 (343)
|||+||||||||+||+++|.++++|++.++++++...+ .
T Consensus 1633 ILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~~~~m 1712 (2281)
T CHL00206 1633 ILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNALTMDM 1712 (2281)
T ss_pred eEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcchhhhhh
Confidence 69999999999999999999999999999999987543 1
Q ss_pred chH--HHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCC-CCCCcEEEEEecCCCchhh
Q psy4538 40 GEG--EKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAST-LDDDLVLVIGATNRPQELD 116 (343)
Q Consensus 40 ~~~--~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~v~vi~~tn~~~~l~ 116 (343)
+.+ ...++.+|+.|+.++||||+|||||.+..+.+. ...+..++..|++... .....|+|||+||+|+.+|
T Consensus 1713 ~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~------~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LD 1786 (2281)
T CHL00206 1713 MPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESN------YLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVD 1786 (2281)
T ss_pred hhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccc------eehHHHHHHHhccccccCCCCCEEEEEeCCCcccCC
Confidence 112 234788999999999999999999999765211 1236778888886532 2356799999999999999
Q ss_pred HHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCC--ChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccc
Q psy4538 117 EAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSL--TVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRI 192 (343)
Q Consensus 117 ~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~--~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~ 192 (343)
|+++| ||+..|.++.|+..+|++++..++...+..+ ...++..+|+.|.||+|+||.++|++|+..|+++
T Consensus 1787 PALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq------ 1860 (2281)
T CHL00206 1787 PALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQ------ 1860 (2281)
T ss_pred HhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc------
Confidence 99999 9999999999999999998876543322222 2346899999999999999999999999999887
Q ss_pred cccCCcccChhHHHHHHHhcC
Q psy4538 193 DALDVRPISIDDFRDALKTVR 213 (343)
Q Consensus 193 ~~~~~~~i~~~d~~~a~~~~~ 213 (343)
+...|+.+++..|+.+..
T Consensus 1861 ---~ks~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206 1861 ---KKSIIDTNTIRSALHRQT 1878 (2281)
T ss_pred ---CCCccCHHHHHHHHHHHH
Confidence 556788899988888764
No 34
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=1.1e-27 Score=222.18 Aligned_cols=200 Identities=41% Similarity=0.669 Sum_probs=170.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCc---
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQE--- 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~--- 77 (343)
+|||||||||||++|+++|++++.+++.+.+.++...+.++....++.+|..+....|+||+|||+|.+...+....
T Consensus 159 vLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~ 238 (364)
T TIGR01242 159 VLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSG 238 (364)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCc
Confidence 58999999999999999999999999999999998888888888999999999888999999999999986654321
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
.....+.+..++..+++... ..++.+|++||.++.+++++++ ||+..++++.|+.++|.+||+.++...... .+.
T Consensus 239 ~~~~~~~l~~ll~~ld~~~~--~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~ 315 (364)
T TIGR01242 239 DREVQRTLMQLLAELDGFDP--RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDV 315 (364)
T ss_pred cHHHHHHHHHHHHHhhCCCC--CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccC
Confidence 22334556667777766543 4578999999999999999987 999999999999999999999988765432 234
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhc
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTV 212 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 212 (343)
++..+++.+.||+++||.++|++|.+.|+++ ....|+.+||.+|+.++
T Consensus 316 ~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~---------~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 316 DLEAIAKMTEGASGADLKAICTEAGMFAIRE---------ERDYVTMDDFIKAVEKV 363 (364)
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---------CCCccCHHHHHHHHHHh
Confidence 7899999999999999999999999999876 45679999999999865
No 35
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.95 E-value=2e-27 Score=211.38 Aligned_cols=163 Identities=19% Similarity=0.221 Sum_probs=140.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHh-----cCCcEEEecccccccccCCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASV-----HQPSIIFIDEIDSLLCQRSD 75 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~-----~~p~vl~iDeid~l~~~~~~ 75 (343)
++||||||||||++|+++|+++|.+++.+++.++.++|.|++++.++.+|..|.. .+||||||||||.+++++..
T Consensus 151 llL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~ 230 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGT 230 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCC
Confidence 5799999999999999999999999999999999999999999999999998864 46999999999999998765
Q ss_pred CchhHHHHHH-HHHHHhhccCC----------CCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHH
Q psy4538 76 QENETSRRLK-TEFLISLDGAS----------TLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVT 142 (343)
Q Consensus 76 ~~~~~~~~~~-~~ll~~l~~~~----------~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~ 142 (343)
.......+++ .+|++.+++.. .....+|+||+|||+++.|+++++| ||+.. ++.|+.++|.+||+
T Consensus 231 ~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~--i~lPd~e~R~eIL~ 308 (413)
T PLN00020 231 TQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVVH 308 (413)
T ss_pred CCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCce--eCCCCHHHHHHHHH
Confidence 4444444554 78998887631 1235679999999999999999999 99975 46899999999999
Q ss_pred HHHhhhCCCCChhhHHHHHHHCCCC
Q psy4538 143 KLLRNITNSLTVDDIEEVGRMTTDF 167 (343)
Q Consensus 143 ~~l~~~~~~~~~~~~~~la~~t~g~ 167 (343)
.+++.. .++..++..|+..+.|-
T Consensus 309 ~~~r~~--~l~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 309 GIFRDD--GVSREDVVKLVDTFPGQ 331 (413)
T ss_pred HHhccC--CCCHHHHHHHHHcCCCC
Confidence 999885 45678899999998874
No 36
>KOG0726|consensus
Probab=99.95 E-value=1.2e-28 Score=209.84 Aligned_cols=201 Identities=40% Similarity=0.612 Sum_probs=174.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchh-
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENE- 79 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~- 79 (343)
|+|||+||||||.||+++|+.....|+.+-.+++..+|.|++.+.++++|+.+..++|+|+||||||.+..++-+..+.
T Consensus 222 VIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~Sgg 301 (440)
T KOG0726|consen 222 VILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGG 301 (440)
T ss_pred eEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCcc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999998877544332
Q ss_pred --HHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 80 --TSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 80 --~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
...+..-+|++.++++.. .+.|-||.+||..+.+||++.| |.+..|+|+.|+...+..|++-+....... .+.
T Consensus 302 erEiQrtmLELLNQldGFds--rgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~-~dV 378 (440)
T KOG0726|consen 302 EREIQRTMLELLNQLDGFDS--RGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLA-EDV 378 (440)
T ss_pred HHHHHHHHHHHHHhccCccc--cCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchh-ccc
Confidence 344455577888888876 6678899999999999999999 999999999999999999998776554322 334
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcC
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVR 213 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 213 (343)
+++.+...-..+|++||+++|.+|.+.|++. .+..++.+||..+.+++-
T Consensus 379 nle~li~~kddlSGAdIkAictEaGllAlRe---------rRm~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 379 NLEELIMTKDDLSGADIKAICTEAGLLALRE---------RRMKVTMEDFKKAKEKVL 427 (440)
T ss_pred cHHHHhhcccccccccHHHHHHHHhHHHHHH---------HHhhccHHHHHHHHHHHH
Confidence 7888888888899999999999999999887 345799999999988764
No 37
>KOG0729|consensus
Probab=99.95 E-value=9.6e-28 Score=202.10 Aligned_cols=201 Identities=36% Similarity=0.559 Sum_probs=174.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCC---Cc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSD---QE 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~---~~ 77 (343)
||+|||||||||..|+++|+..+..|+.|-.+++..+|+|++.+.++.+|+.++....||+|+||+|.+.+.+=+ +.
T Consensus 214 vllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~gg 293 (435)
T KOG0729|consen 214 VLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGG 293 (435)
T ss_pred eEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999776532 34
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
+....+..-++++.++++.. .+++-++.+||+|+.+||++.+ |++..++|..|+.+.|..|++-+.+..... .+.
T Consensus 294 dnevqrtmleli~qldgfdp--rgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsve-rdi 370 (435)
T KOG0729|consen 294 DNEVQRTMLELINQLDGFDP--RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVE-RDI 370 (435)
T ss_pred cHHHHHHHHHHHHhccCCCC--CCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccc-cch
Confidence 45556666778888888875 6678888899999999999999 999999999999999999998877664322 233
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcC
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVR 213 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 213 (343)
-++.+|+.+..-++++|+++|.+|.+.|++. ..+..|..||.+|+.++.
T Consensus 371 r~ellarlcpnstgaeirsvcteagmfaira---------rrk~atekdfl~av~kvv 419 (435)
T KOG0729|consen 371 RFELLARLCPNSTGAEIRSVCTEAGMFAIRA---------RRKVATEKDFLDAVNKVV 419 (435)
T ss_pred hHHHHHhhCCCCcchHHHHHHHHhhHHHHHH---------HhhhhhHHHHHHHHHHHH
Confidence 5788999999999999999999999999876 245678899999988764
No 38
>KOG0732|consensus
Probab=99.95 E-value=2.2e-27 Score=234.12 Aligned_cols=298 Identities=29% Similarity=0.440 Sum_probs=233.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-----CCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-----KATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSD 75 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-----~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~ 75 (343)
+|+|||||||||..|+++|..+ +..|+.-...+..++|+|+.++.++.+|++++.++|+|+|+||||.+++.++.
T Consensus 302 vL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSs 381 (1080)
T KOG0732|consen 302 VLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSS 381 (1080)
T ss_pred eeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccc
Confidence 6899999999999999999988 35566677889999999999999999999999999999999999999999987
Q ss_pred CchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCC
Q psy4538 76 QENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLT 153 (343)
Q Consensus 76 ~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~ 153 (343)
........++.+++..|+++.. .+.|++||+||+++.+++++++ ||+..++|+.|+.+.|.+|+..+..+-...++
T Consensus 382 kqEqih~SIvSTLLaLmdGlds--RgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~ 459 (1080)
T KOG0732|consen 382 KQEQIHASIVSTLLALMDGLDS--RGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPIS 459 (1080)
T ss_pred hHHHhhhhHHHHHHHhccCCCC--CCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCC
Confidence 7777778889999999999987 6789999999999999999999 99999999999999999999988888778888
Q ss_pred hhhHHHHHHHCCCCCHHHHHHHHHHHhccccccccccc-------ccccCCcccChhHHHHHHHhcCCCccccccc----
Q psy4538 154 VDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSR-------IDALDVRPISIDDFRDALKTVRPSVCQADFV---- 222 (343)
Q Consensus 154 ~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~-------~~~~~~~~i~~~d~~~a~~~~~ps~~~k~~~---- 222 (343)
...+..+|+.+.||.++||+.+|.+|++.++++-.... ....+...+...||..|+.+..|+......+
T Consensus 460 ~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~P 539 (1080)
T KOG0732|consen 460 RELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRP 539 (1080)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCC
Confidence 88999999999999999999999999999987632110 1112223488889999998887764332110
Q ss_pred ---------------------------------------------------------cCcceEeecchhhhhcccCCCcc
Q psy4538 223 ---------------------------------------------------------HQPSIIFIDEIDSLLCQRSDQEN 245 (343)
Q Consensus 223 ---------------------------------------------------------~~p~ilf~DEiDsl~~~R~~~~~ 245 (343)
-.|...++++....+--+.-.+.
T Consensus 540 l~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~ 619 (1080)
T KOG0732|consen 540 LSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGL 619 (1080)
T ss_pred CCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhcc
Confidence 00111122222211111111234
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCC---------cccccHHHHH--hhhceEeccCCCCC
Q psy4538 246 ETSRRLKTEFLISLDGASTLDDDLVLVIGATNR---------PQELDEAARR--RLVKRLYIPLPDEQ 302 (343)
Q Consensus 246 ~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~---------~~~lD~allR--R~d~~i~~~~P~~~ 302 (343)
.+....++.||..+++-..+.. |+.|++++| |+..+.+... +|...+.+.+|...
T Consensus 620 ~v~s~~issll~d~~~~~~~~~--iv~i~~eaR~~~psi~~ip~~d~w~~~~p~s~~~~~~~~l~~~~ 685 (1080)
T KOG0732|consen 620 PVQSLDISSLLSDEGTEDLEEE--IVHIFMEARKTTPSIVFIPNVDEWARVIPVSFLEEFLSSLDEKA 685 (1080)
T ss_pred chHHHHHHHHHhccccccHHHH--HHHHHHHHhccCCceeeccchhhhhhcCcchhhhcchhcchhhh
Confidence 4566788889988877655334 666777777 4666666666 89999988888553
No 39
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.94 E-value=4.1e-26 Score=215.35 Aligned_cols=203 Identities=32% Similarity=0.480 Sum_probs=154.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc----------EEEEecccccccccchHHHHHHHHHHHHHhc----CCcEEEeccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT----------FFCISASTLTSKWYGEGEKMVRALFAVASVH----QPSIIFIDEI 66 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~----------~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~----~p~vl~iDei 66 (343)
+|||||||||||++++++|++++.+ |+.+..+++.+++.++++..++.+|..++.. .|+||||||+
T Consensus 219 ILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEi 298 (512)
T TIGR03689 219 VLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEM 298 (512)
T ss_pred eEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehh
Confidence 6899999999999999999998644 5566777888899999999999999887653 6999999999
Q ss_pred ccccccCCCC-chhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHH
Q psy4538 67 DSLLCQRSDQ-ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTK 143 (343)
Q Consensus 67 d~l~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~ 143 (343)
|.++.+++.+ ......+++.+++..+++... ..++++|++||+++.+|++++| ||+..|+|+.|+.++|.+||+.
T Consensus 299 D~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~--~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~ 376 (512)
T TIGR03689 299 DSIFRTRGSGVSSDVETTVVPQLLSELDGVES--LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSK 376 (512)
T ss_pred hhhhcccCCCccchHHHHHHHHHHHHhccccc--CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHH
Confidence 9999876543 233456778899999998865 4579999999999999999998 9999999999999999999999
Q ss_pred HHhhhCCCCC----------hhhHHHHHHH-----------------------------CCCCCHHHHHHHHHHHhcccc
Q psy4538 144 LLRNITNSLT----------VDDIEEVGRM-----------------------------TTDFSGADMASLCREASLGPV 184 (343)
Q Consensus 144 ~l~~~~~~~~----------~~~~~~la~~-----------------------------t~g~s~~dl~~l~~~a~~~a~ 184 (343)
++.... .++ ..++..+++. +..+|++.|.++|..|...|+
T Consensus 377 ~l~~~l-~l~~~l~~~~g~~~a~~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai 455 (512)
T TIGR03689 377 YLTDSL-PLDADLAEFDGDREATAAALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAI 455 (512)
T ss_pred HhhccC-CchHHHHHhcCCCHHHHHHHHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHH
Confidence 987521 111 1112222211 334566667777766666666
Q ss_pred cccccccccccCCcccChhHHHHHHHh
Q psy4538 185 RSIDLSRIDALDVRPISIDDFRDALKT 211 (343)
Q Consensus 185 ~~~~~~~~~~~~~~~i~~~d~~~a~~~ 211 (343)
++.. ......++++|+..++..
T Consensus 456 ~~~~-----~~~~~~~~~~~l~~a~~~ 477 (512)
T TIGR03689 456 KDHI-----TGGQVGLRIEHLLAAVLD 477 (512)
T ss_pred HHHH-----hcCCcCcCHHHHHHHHHH
Confidence 5432 112356788888877764
No 40
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9.3e-28 Score=210.28 Aligned_cols=97 Identities=42% Similarity=0.568 Sum_probs=87.4
Q ss_pred cCcceEeecchhhhhcccCCCcc---hhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEecc
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQEN---ETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIP 297 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~---~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~ 297 (343)
++|||||||||||++++|.+++. .--+|..-|||+||||+..+++ |=||+||||||.||||||| |||++|.||
T Consensus 243 kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n--vKVI~ATNR~D~LDPALLRPGR~DRkIEfp 320 (406)
T COG1222 243 KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN--VKVIMATNRPDILDPALLRPGRFDRKIEFP 320 (406)
T ss_pred cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC--eEEEEecCCccccChhhcCCCcccceeecC
Confidence 37999999999999999976543 3457899999999999999777 9999999999999999999 999999999
Q ss_pred CCCCCCCCCCchhHHHHhhhhhhhhhhcHHHHHhhcCCCCCccCC
Q psy4538 298 LPDEQKVPGSNPTMDKIDQENETSRRLKTEFLISLDGASTLDDDL 342 (343)
Q Consensus 298 ~P~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (343)
+||++.| .++|+--+++-||.+|+
T Consensus 321 lPd~~gR---------------------~~Il~IHtrkM~l~~dv 344 (406)
T COG1222 321 LPDEEGR---------------------AEILKIHTRKMNLADDV 344 (406)
T ss_pred CCCHHHH---------------------HHHHHHHhhhccCccCc
Confidence 9999877 88888888888888876
No 41
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.94 E-value=3.2e-25 Score=209.71 Aligned_cols=271 Identities=16% Similarity=0.226 Sum_probs=178.3
Q ss_pred HHHHHHHc-CCcEEEEeccccccc---ccchHHHHHHHHHHHHHh---cCCcEEEecccccccccCCCCchhHHHHHHHH
Q psy4538 15 GKCVAAQC-KATFFCISASTLTSK---WYGEGEKMVRALFAVASV---HQPSIIFIDEIDSLLCQRSDQENETSRRLKTE 87 (343)
Q Consensus 15 a~~la~~l-~~~~~~v~~~~l~~~---~~~~~~~~l~~~~~~~~~---~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ 87 (343)
.+.++... +.+++.++..+-... ..+.....-..+++.... ..|++++|.|+|.++.. ....+.+..
T Consensus 32 ~~~~~~~~~~~~~~~W~~~~G~~~~~~~~~~~~~~p~~al~~i~~~~~~~~~~~vl~d~h~~~~~------~~~~r~l~~ 105 (489)
T CHL00195 32 IRKSIKLNLNRSIYSWDFVDGYTNNPNDNGFAKRNPLQALEFIEKLTPETPALFLLKDFNRFLND------ISISRKLRN 105 (489)
T ss_pred HHHHHHhcCCCceEEEeccCCCccCCCccCcccccHHHHHHHHHhcCCCCCcEEEEecchhhhcc------hHHHHHHHH
Confidence 34555544 456777777554311 111111111222222222 23789999999998722 233444445
Q ss_pred HHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCC
Q psy4538 88 FLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDF 167 (343)
Q Consensus 88 ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~ 167 (343)
+....... ...++++ +. ...+++.+.+- ...+.+|.|+.+|..++++.+....+...++..++.+++.+.|+
T Consensus 106 l~~~~~~~----~~~~i~~-~~--~~~~p~el~~~-~~~~~~~lP~~~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gl 177 (489)
T CHL00195 106 LSRILKTQ----PKTIIII-AS--ELNIPKELKDL-ITVLEFPLPTESEIKKELTRLIKSLNIKIDSELLENLTRACQGL 177 (489)
T ss_pred HHHHHHhC----CCEEEEE-cC--CCCCCHHHHhc-eeEEeecCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCC
Confidence 54443332 2233333 33 24566666653 45889999999999999998887777778899999999999999
Q ss_pred CHHHHHHHHHHHhcccccccccc----------------cccccCCcccChhHH------HHHH-----------H----
Q psy4538 168 SGADMASLCREASLGPVRSIDLS----------------RIDALDVRPISIDDF------RDAL-----------K---- 210 (343)
Q Consensus 168 s~~dl~~l~~~a~~~a~~~~~~~----------------~~~~~~~~~i~~~d~------~~a~-----------~---- 210 (343)
+..+++.++..+.... ..+... ..........+++|+ ++.+ .
T Consensus 178 s~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~k~q~~~~~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl 256 (489)
T CHL00195 178 SLERIRRVLSKIIATY-KTIDENSIPLILEEKKQIISQTEILEFYSVNEKISDIGGLDNLKDWLKKRSTSFSKQASNYGL 256 (489)
T ss_pred CHHHHHHHHHHHHHHc-CCCChhhHHHHHHHHHHHHhhhccccccCCCCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCC
Confidence 9999999988753221 111000 011111123344333 1111 1
Q ss_pred -------hcCCCccccccc-----------------------------------------cCcceEeecchhhhhcccCC
Q psy4538 211 -------TVRPSVCQADFV-----------------------------------------HQPSIIFIDEIDSLLCQRSD 242 (343)
Q Consensus 211 -------~~~ps~~~k~~~-----------------------------------------~~p~ilf~DEiDsl~~~R~~ 242 (343)
-+.|+||||+++ .+||||||||||+++++++.
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~ 336 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSES 336 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccC
Confidence 134889999863 37999999999999987643
Q ss_pred -CcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEeccCCCCCCC
Q psy4538 243 -QENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQKV 304 (343)
Q Consensus 243 -~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~~P~~~~r 304 (343)
..++..+|++++||++|++.+ ..|+||+|||+|+.||||++| |||++++|++|+.++|
T Consensus 337 ~~d~~~~~rvl~~lL~~l~~~~----~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR 397 (489)
T CHL00195 337 KGDSGTTNRVLATFITWLSEKK----SPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEER 397 (489)
T ss_pred CCCchHHHHHHHHHHHHHhcCC----CceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHH
Confidence 455788999999999999643 349999999999999999999 9999999999998754
No 42
>KOG0651|consensus
Probab=99.94 E-value=2.1e-26 Score=197.74 Aligned_cols=200 Identities=36% Similarity=0.565 Sum_probs=167.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCC---c
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQ---E 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~---~ 77 (343)
++||||||+|||.+|+++|..++++++.+.++.+.+++.|++.+.++..|..|+.+.||++|+||+|.+.+.+... .
T Consensus 169 ~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~ 248 (388)
T KOG0651|consen 169 LLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSS 248 (388)
T ss_pred eEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccch
Confidence 5899999999999999999999999999999999999999999999999999999999999999999998776332 3
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
+....+.+-++++.|+++.. ..+|-+|.++|+|+.++++++| |++..+++|.|+...|..|++-+..... ....-
T Consensus 249 dreiqrTLMeLlnqmdgfd~--l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~-~~Gei 325 (388)
T KOG0651|consen 249 DREIQRTLMELLNQMDGFDT--LHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPID-FHGEI 325 (388)
T ss_pred hHHHHHHHHHHHHhhccchh--cccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeecccccc-ccccc
Confidence 34456666777777777765 6678899999999999999999 9999999999999999998876654431 12223
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhc
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTV 212 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 212 (343)
+.+.+.+.+.||+++|+++.|.+|.+.+++. ....+-.+|+..++.+.
T Consensus 326 d~eaivK~~d~f~gad~rn~~tEag~Fa~~~---------~~~~vl~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 326 DDEAILKLVDGFNGADLRNVCTEAGMFAIPE---------ERDEVLHEDFMKLVRKQ 373 (388)
T ss_pred cHHHHHHHHhccChHHHhhhcccccccccch---------hhHHHhHHHHHHHHHHH
Confidence 4778899999999999999999998888766 23345677887776654
No 43
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.92 E-value=2.3e-23 Score=208.57 Aligned_cols=171 Identities=22% Similarity=0.336 Sum_probs=130.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----------CCcEEEEeccccc--ccccchHHHHHHHHHHHHHhcCCcEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----------KATFFCISASTLT--SKWYGEGEKMVRALFAVASVHQPSIIFIDEIDS 68 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~~~~l~--~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~ 68 (343)
++|+||||||||++++++|+.+ +..++.+++..+. .++.|+.+..++.+++.+....++||||||+|.
T Consensus 206 ~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~ 285 (731)
T TIGR02639 206 PLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHT 285 (731)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHH
Confidence 5899999999999999999987 7789999988876 467889999999999998777789999999999
Q ss_pred ccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCC-----chhhHHHHhccceEEEEcCCCHHHHHHHHHH
Q psy4538 69 LLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRP-----QELDEAARRRLVKRLYIPLPDEQARCEIVTK 143 (343)
Q Consensus 69 l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~-----~~l~~~l~~rf~~~i~~~~P~~~er~~il~~ 143 (343)
+.+.+...... ....+.+...+ ..+.+.+|++|+.. ...++++.|||. .|+++.|+.+++.+|++.
T Consensus 286 l~~~g~~~~~~--~~~~~~L~~~l------~~g~i~~IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~ 356 (731)
T TIGR02639 286 IVGAGATSGGS--MDASNLLKPAL------SSGKLRCIGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKG 356 (731)
T ss_pred HhccCCCCCcc--HHHHHHHHHHH------hCCCeEEEEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHH
Confidence 98765322211 11222222222 24568899998763 357999999997 799999999999999997
Q ss_pred HHhhh----CCCCChhhHHHHHHHCCCCCH-----HHHHHHHHHHh
Q psy4538 144 LLRNI----TNSLTVDDIEEVGRMTTDFSG-----ADMASLCREAS 180 (343)
Q Consensus 144 ~l~~~----~~~~~~~~~~~la~~t~g~s~-----~dl~~l~~~a~ 180 (343)
....+ ...++++.+..++..+..|.+ .....++.+|+
T Consensus 357 ~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~ 402 (731)
T TIGR02639 357 LKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAG 402 (731)
T ss_pred HHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhh
Confidence 76542 346788899998888776643 33345555554
No 44
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.91 E-value=5.7e-23 Score=203.48 Aligned_cols=171 Identities=25% Similarity=0.350 Sum_probs=125.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----------CCcEEEEeccccc--ccccchHHHHHHHHHHHHHhcCCcEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----------KATFFCISASTLT--SKWYGEGEKMVRALFAVASVHQPSIIFIDEIDS 68 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~~~~l~--~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~ 68 (343)
+||+||||||||++|+.++..+ +..++.++...+. ..+.|+.+..++.++..+....++||||||+|.
T Consensus 210 ~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~ 289 (758)
T PRK11034 210 PLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHT 289 (758)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHH
Confidence 5899999999999999999874 5566666665554 456788889999999988777889999999999
Q ss_pred ccccCCCCc-hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCc-----hhhHHHHhccceEEEEcCCCHHHHHHHHH
Q psy4538 69 LLCQRSDQE-NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ-----ELDEAARRRLVKRLYIPLPDEQARCEIVT 142 (343)
Q Consensus 69 l~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~-----~l~~~l~~rf~~~i~~~~P~~~er~~il~ 142 (343)
+++.+.... ......++..++ ..+.+.+|++|+..+ ..|+++.+||. .|.++.|+.+++.+|++
T Consensus 290 L~g~g~~~~g~~d~~nlLkp~L---------~~g~i~vIgATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~ 359 (758)
T PRK11034 290 IIGAGAASGGQVDAANLIKPLL---------SSGKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIIN 359 (758)
T ss_pred HhccCCCCCcHHHHHHHHHHHH---------hCCCeEEEecCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHH
Confidence 987654221 111112222222 145688999998754 57999999996 89999999999999999
Q ss_pred HHHhhh----CCCCChhhHHHHHHHCCC-----CCHHHHHHHHHHHhc
Q psy4538 143 KLLRNI----TNSLTVDDIEEVGRMTTD-----FSGADMASLCREASL 181 (343)
Q Consensus 143 ~~l~~~----~~~~~~~~~~~la~~t~g-----~s~~dl~~l~~~a~~ 181 (343)
.+...+ ...++++.+..++..+.. +-|.....++.+|+.
T Consensus 360 ~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a 407 (758)
T PRK11034 360 GLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGA 407 (758)
T ss_pred HHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHH
Confidence 766543 345677777766665443 345577778877763
No 45
>KOG0734|consensus
Probab=99.91 E-value=9.8e-25 Score=199.34 Aligned_cols=96 Identities=36% Similarity=0.605 Sum_probs=86.6
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEeccCCCC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDE 301 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~~P~~ 301 (343)
+||||||||||++.++|......+++..+||||.||||+.. +.+||||||||+|+.||+||+| |||++|.||.||.
T Consensus 396 APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~q--NeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv 473 (752)
T KOG0734|consen 396 APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQ--NEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDV 473 (752)
T ss_pred CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCc--CCceEEEeccCChhhhhHHhcCCCccceeEecCCCCc
Confidence 79999999999999999877777999999999999999998 4559999999999999999999 9999999999999
Q ss_pred CCCCCCchhHHHHhhhhhhhhhhcHHHHHhhcCCCCCccCC
Q psy4538 302 QKVPGSNPTMDKIDQENETSRRLKTEFLISLDGASTLDDDL 342 (343)
Q Consensus 302 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (343)
.-| .|+|+.-..+..+++|+
T Consensus 474 ~GR---------------------~eIL~~yl~ki~~~~~V 493 (752)
T KOG0734|consen 474 RGR---------------------TEILKLYLSKIPLDEDV 493 (752)
T ss_pred ccH---------------------HHHHHHHHhcCCcccCC
Confidence 877 67777777777776664
No 46
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.88 E-value=8.5e-22 Score=156.28 Aligned_cols=130 Identities=37% Similarity=0.602 Sum_probs=116.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcC-CcEEEecccccccccCCCCchh
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQ-PSIIFIDEIDSLLCQRSDQENE 79 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~-p~vl~iDeid~l~~~~~~~~~~ 79 (343)
|||+||||||||++++.+|+.++.+++.+++..+.+.+.+...+.+..+|..+.... |+||+|||+|.+.+..+.....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 689999999999999999999999999999999998888999999999999998777 9999999999999887555566
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHH-hccceEEEEcC
Q psy4538 80 TSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAAR-RRLVKRLYIPL 131 (343)
Q Consensus 80 ~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~-~rf~~~i~~~~ 131 (343)
........++..++..... ..++++|++||.++.+++.++ +||...+++|.
T Consensus 81 ~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred ccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 7778888999999887652 467999999999999999999 99999998874
No 47
>KOG0742|consensus
Probab=99.86 E-value=1.2e-20 Score=168.00 Aligned_cols=174 Identities=28% Similarity=0.468 Sum_probs=137.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcC-CcEEEecccccccccCCCC-ch
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQ-PSIIFIDEIDSLLCQRSDQ-EN 78 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~-p~vl~iDeid~l~~~~~~~-~~ 78 (343)
|++|||||||||+.|+.+|.+.|..+-.+...++.-. -.+....++.+|++++... +-+|||||+|.+++.+... -+
T Consensus 387 ilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymS 465 (630)
T KOG0742|consen 387 ILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMS 465 (630)
T ss_pred eeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhc
Confidence 6899999999999999999999999988887776432 2345678999999997654 4578899999998887643 23
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhCC--------
Q psy4538 79 ETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNITN-------- 150 (343)
Q Consensus 79 ~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~-------- 150 (343)
+.....++.|+-.-.. ....++++.+||+|..+|.++..|++..++||.|..++|..++..++.++-.
T Consensus 466 EaqRsaLNAlLfRTGd----qSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~ 541 (630)
T KOG0742|consen 466 EAQRSALNALLFRTGD----QSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKP 541 (630)
T ss_pred HHHHHHHHHHHHHhcc----cccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCC
Confidence 3444455555543222 2456888889999999999999999999999999999999999999876421
Q ss_pred ------------------CCChhhHHHHHHHCCCCCHHHHHHHHHHH
Q psy4538 151 ------------------SLTVDDIEEVGRMTTDFSGADMASLCREA 179 (343)
Q Consensus 151 ------------------~~~~~~~~~la~~t~g~s~~dl~~l~~~a 179 (343)
...+..+...|+.|.|||+++|..|+...
T Consensus 542 ~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~v 588 (630)
T KOG0742|consen 542 GKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASV 588 (630)
T ss_pred chhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 01233577889999999999999988654
No 48
>KOG0738|consensus
Probab=99.86 E-value=5e-22 Score=175.66 Aligned_cols=81 Identities=53% Similarity=0.837 Sum_probs=72.6
Q ss_pred CcceEeecchhhhhcccCCCcc-hhHHHHHHHHHHhhcCCCCCCC--CcEEEEeecCCcccccHHHHHhhhceEeccCCC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQEN-ETSRRLKTEFLISLDGASTLDD--DLVLVIGATNRPQELDEAARRRLVKRLYIPLPD 300 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~-~~~~r~v~~lL~~mdg~~~~~~--~~v~vi~aTN~~~~lD~allRR~d~~i~~~~P~ 300 (343)
+|++|||||||||.++||+++. ..++|+-++||.+|||+++.-+ ..|+|+||||.|.-||.||+|||.+.||+|||+
T Consensus 304 APStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~ 383 (491)
T KOG0738|consen 304 APSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPD 383 (491)
T ss_pred CCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCC
Confidence 7999999999999999987654 4679999999999999986322 359999999999999999999999999999999
Q ss_pred CCCC
Q psy4538 301 EQKV 304 (343)
Q Consensus 301 ~~~r 304 (343)
.+.|
T Consensus 384 ~~~R 387 (491)
T KOG0738|consen 384 AEAR 387 (491)
T ss_pred HHHH
Confidence 9865
No 49
>KOG0744|consensus
Probab=99.85 E-value=1e-20 Score=163.79 Aligned_cols=197 Identities=27% Similarity=0.381 Sum_probs=149.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC---------CcEEEEecccccccccchHHHHHHHHHHHHHh---cCCc--EEEeccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK---------ATFFCISASTLTSKWYGEGEKMVRALFAVASV---HQPS--IIFIDEI 66 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~---------~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~---~~p~--vl~iDei 66 (343)
||++||||||||+|++++|+++. ..++++|+..++++|.+++.+.+..+|+.... ...+ .++|||+
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEV 259 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHH
Confidence 58999999999999999999983 46889999999999999999999999986643 2233 4568999
Q ss_pred ccccccC----CCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHH
Q psy4538 67 DSLLCQR----SDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVT 142 (343)
Q Consensus 67 d~l~~~~----~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~ 142 (343)
+++...+ +..+....-|+++.++..++.+.. ..+|++++|+|-.+.+|.++..|-+.+.++++|+...+++|++
T Consensus 260 ESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~--~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~Ilk 337 (423)
T KOG0744|consen 260 ESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKR--YPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILK 337 (423)
T ss_pred HHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhcc--CCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHH
Confidence 9997655 223344567899999999999987 5568999999999999999999999999999999999999999
Q ss_pred HHHhhhC---CC--------------CChhhHHHHHHH-CCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhH
Q psy4538 143 KLLRNIT---NS--------------LTVDDIEEVGRM-TTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDD 204 (343)
Q Consensus 143 ~~l~~~~---~~--------------~~~~~~~~la~~-t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d 204 (343)
.++.... .. ..+.....+.+. +.|++|+-|+.+=--|...-.+ ..+++.++
T Consensus 338 scieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkLP~Laha~y~~-----------~~~v~~~~ 406 (423)
T KOG0744|consen 338 SCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTVGLSGRTLRKLPLLAHAEYFR-----------TFTVDLSN 406 (423)
T ss_pred HHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhcCCccchHhhhhHHHHHhccC-----------CCccChHH
Confidence 8876521 10 111122333333 4888888888764333222221 24678888
Q ss_pred HHHHHH
Q psy4538 205 FRDALK 210 (343)
Q Consensus 205 ~~~a~~ 210 (343)
|..++.
T Consensus 407 fl~al~ 412 (423)
T KOG0744|consen 407 FLLALL 412 (423)
T ss_pred HHHHHH
Confidence 876654
No 50
>CHL00181 cbbX CbbX; Provisional
Probab=99.84 E-value=5e-20 Score=164.34 Aligned_cols=178 Identities=18% Similarity=0.250 Sum_probs=134.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-------CCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-------KATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQR 73 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-------~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~ 73 (343)
++|+||||||||++|+++|+.+ +.+++.+++.++.+.+.|++......++..+. ++||||||++.+...+
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~ 138 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPD 138 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCC
Confidence 5899999999999999999876 23689999999988888877776777777653 6899999999986543
Q ss_pred CCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCc-----hhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhh
Q psy4538 74 SDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ-----ELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNI 148 (343)
Q Consensus 74 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~-----~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~ 148 (343)
.. ..........++..|+.. ...+++|++++... ..+|.+++||...++|++|+.+++.+|+..++++.
T Consensus 139 ~~--~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 139 NE--RDYGSEAIEILLQVMENQ----RDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred Cc--cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 22 234456677777777653 23466666664321 23589999999999999999999999999999988
Q ss_pred CCCCChhhHHHHHHH------CCCC-CHHHHHHHHHHHhccccccc
Q psy4538 149 TNSLTVDDIEEVGRM------TTDF-SGADMASLCREASLGPVRSI 187 (343)
Q Consensus 149 ~~~~~~~~~~~la~~------t~g~-s~~dl~~l~~~a~~~a~~~~ 187 (343)
...++++....+... ...+ +++++++++..+......++
T Consensus 213 ~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~ 258 (287)
T CHL00181 213 QYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRI 258 (287)
T ss_pred cCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 777777766655553 2333 48999999988865554443
No 51
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.84 E-value=1.2e-19 Score=183.86 Aligned_cols=159 Identities=23% Similarity=0.364 Sum_probs=120.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----------CCcEEEEeccccc--ccccchHHHHHHHHHHHHHhcCCcEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----------KATFFCISASTLT--SKWYGEGEKMVRALFAVASVHQPSIIFIDEIDS 68 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~~~~l~--~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~ 68 (343)
++|+||||||||++|+.+|..+ +.+++.++...+. .+|.|+.+..++.++..+....++||||||+|.
T Consensus 203 ~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~ 282 (821)
T CHL00095 203 PILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHT 282 (821)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHH
Confidence 5899999999999999999986 4788999988776 467789999999999998777789999999999
Q ss_pred ccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCc-----hhhHHHHhccceEEEEcCCCHHHHHHHHHH
Q psy4538 69 LLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ-----ELDEAARRRLVKRLYIPLPDEQARCEIVTK 143 (343)
Q Consensus 69 l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~-----~l~~~l~~rf~~~i~~~~P~~~er~~il~~ 143 (343)
+.+.++.........+ |...+ ..+.+.+|++|+... ..++++.+||. .+.++.|+.++...|++.
T Consensus 283 l~~~g~~~g~~~~a~l---Lkp~l------~rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 283 LIGAGAAEGAIDAANI---LKPAL------ARGELQCIGATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFG 352 (821)
T ss_pred HhcCCCCCCcccHHHH---hHHHH------hCCCcEEEEeCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHH
Confidence 9876543221111122 22222 145678888887653 46889999997 689999999999999886
Q ss_pred HHhh----hCCCCChhhHHHHHHHCCCCCH
Q psy4538 144 LLRN----ITNSLTVDDIEEVGRMTTDFSG 169 (343)
Q Consensus 144 ~l~~----~~~~~~~~~~~~la~~t~g~s~ 169 (343)
.... ....++++.+..++..+.+|.+
T Consensus 353 l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 353 LRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 5432 3344788888888888877754
No 52
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.84 E-value=4.8e-20 Score=163.34 Aligned_cols=174 Identities=17% Similarity=0.236 Sum_probs=131.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-------CCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-------KATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQR 73 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-------~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~ 73 (343)
++|+||||||||++|+++|+.+ ..++++++++++.+.+.|+....++.+|..+. ++||||||+|.+....
T Consensus 45 vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~ 121 (261)
T TIGR02881 45 MIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG 121 (261)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC
Confidence 5899999999999999999875 24788899999999999998888888887764 6799999999986321
Q ss_pred CCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCC-----chhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhh
Q psy4538 74 SDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRP-----QELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNI 148 (343)
Q Consensus 74 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~-----~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~ 148 (343)
........+..++..++.. ...+++|+++... ..+++++++||...+.||.|+.+++.+|++.+++..
T Consensus 122 ---~~~~~~~~i~~Ll~~~e~~----~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 122 ---EKDFGKEAIDTLVKGMEDN----RNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred ---ccchHHHHHHHHHHHHhcc----CCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 1122345567777777654 2334555444221 246789999999899999999999999999999987
Q ss_pred CCCCChhhHHHHHHHC---------CCCCHHHHHHHHHHHhcccc
Q psy4538 149 TNSLTVDDIEEVGRMT---------TDFSGADMASLCREASLGPV 184 (343)
Q Consensus 149 ~~~~~~~~~~~la~~t---------~g~s~~dl~~l~~~a~~~a~ 184 (343)
...++++.+..+++.. ...+++.+++++..|.....
T Consensus 195 ~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~ 239 (261)
T TIGR02881 195 EYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQA 239 (261)
T ss_pred CCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHH
Confidence 7778888777775532 12467888888888765443
No 53
>KOG0727|consensus
Probab=99.84 E-value=2e-21 Score=162.94 Aligned_cols=82 Identities=41% Similarity=0.607 Sum_probs=72.8
Q ss_pred cCcceEeecchhhhhcccCCCcc---hhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEecc
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQEN---ETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIP 297 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~---~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~ 297 (343)
++|+|+||||+|+++.+|=+... ..-.|++-+||++|||+....+ |=||.||||.|.||||||| |+|++|.||
T Consensus 247 napsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~n--vkvimatnradtldpallrpgrldrkiefp 324 (408)
T KOG0727|consen 247 NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTN--VKVIMATNRADTLDPALLRPGRLDRKIEFP 324 (408)
T ss_pred cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccc--eEEEEecCcccccCHhhcCCccccccccCC
Confidence 47999999999999999965543 4557999999999999998555 9999999999999999999 999999999
Q ss_pred CCCCCCCCC
Q psy4538 298 LPDEQKVPG 306 (343)
Q Consensus 298 ~P~~~~r~~ 306 (343)
+||..++.+
T Consensus 325 lpdrrqkrl 333 (408)
T KOG0727|consen 325 LPDRRQKRL 333 (408)
T ss_pred CCchhhhhh
Confidence 999876543
No 54
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.83 E-value=1e-19 Score=162.57 Aligned_cols=198 Identities=17% Similarity=0.231 Sum_probs=143.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC-------CcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK-------ATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQR 73 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~-------~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~ 73 (343)
++|+||||||||++|+++|+.+. .+++.+++.++.+.+.|.+......+|..+. +++|||||++.+...+
T Consensus 61 vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~ 137 (284)
T TIGR02880 61 MSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPD 137 (284)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCC
Confidence 58999999999999999988762 3689999988888888887777777777654 6899999999986433
Q ss_pred CCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCC--Cc---hhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhh
Q psy4538 74 SDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNR--PQ---ELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNI 148 (343)
Q Consensus 74 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~--~~---~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~ 148 (343)
.. ..........++..++.. ...+++|++++. .+ .+++.+++||...|+||+++.+++.+|+++++++.
T Consensus 138 ~~--~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 138 NE--RDYGQEAIEILLQVMENQ----RDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ 211 (284)
T ss_pred Cc--cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence 22 224456667777777653 345667766643 22 24789999999999999999999999999999988
Q ss_pred CCCCChhhHHHHHHH-------CCCCCHHHHHHHHHHHhccccccccccc---ccccCCcccChhHHHH
Q psy4538 149 TNSLTVDDIEEVGRM-------TTDFSGADMASLCREASLGPVRSIDLSR---IDALDVRPISIDDFRD 207 (343)
Q Consensus 149 ~~~~~~~~~~~la~~-------t~g~s~~dl~~l~~~a~~~a~~~~~~~~---~~~~~~~~i~~~d~~~ 207 (343)
...++++....+..+ -.-.+.+++++++..+......++.... ........|+.+|+..
T Consensus 212 ~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~r~~~~~~~~~~~~~~~~~~~~d~~~ 280 (284)
T TIGR02880 212 QYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQANRLFCDLDRVLDKSDLETIDPEDLLA 280 (284)
T ss_pred ccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHhcCcCCCCCHHHHhCCCHHHHhh
Confidence 777888777777665 2234689999999888655544432221 1122234455666543
No 55
>KOG0739|consensus
Probab=99.83 E-value=7.8e-21 Score=162.76 Aligned_cols=81 Identities=59% Similarity=0.922 Sum_probs=75.7
Q ss_pred cCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHHhhhceEeccCCCCC
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQ 302 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allRR~d~~i~~~~P~~~ 302 (343)
+.|+||||||||++.+.|+++.+..++|+-.+||.+|+|+-+ ++++|+|+||||-|..||+|+.|||++.||+|+|+..
T Consensus 224 ~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~-d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~ 302 (439)
T KOG0739|consen 224 NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGN-DNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAH 302 (439)
T ss_pred cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhcccc-CCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHH
Confidence 479999999999999999999999999999999999999975 4677999999999999999999999999999999986
Q ss_pred CC
Q psy4538 303 KV 304 (343)
Q Consensus 303 ~r 304 (343)
+|
T Consensus 303 AR 304 (439)
T KOG0739|consen 303 AR 304 (439)
T ss_pred Hh
Confidence 54
No 56
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.82 E-value=6.1e-21 Score=170.22 Aligned_cols=79 Identities=16% Similarity=0.150 Sum_probs=65.8
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHH-HHHHHhhcCCC----------CCCCCcEEEEeecCCcccccHHHHH--hh
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLK-TEFLISLDGAS----------TLDDDLVLVIGATNRPQELDEAARR--RL 290 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v-~~lL~~mdg~~----------~~~~~~v~vi~aTN~~~~lD~allR--R~ 290 (343)
+||||||||||+++++|++....+.++++ +|||++|||.. ......|+||+|||+|+.|||||+| ||
T Consensus 212 aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRf 291 (413)
T PLN00020 212 KMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRM 291 (413)
T ss_pred CCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCC
Confidence 59999999999999999866666666776 89999999742 1123459999999999999999999 99
Q ss_pred hceEeccCCCCCCC
Q psy4538 291 VKRLYIPLPDEQKV 304 (343)
Q Consensus 291 d~~i~~~~P~~~~r 304 (343)
|+.+ ++|+.++|
T Consensus 292 Dk~i--~lPd~e~R 303 (413)
T PLN00020 292 EKFY--WAPTREDR 303 (413)
T ss_pred Ccee--CCCCHHHH
Confidence 9965 58998765
No 57
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.82 E-value=1.2e-18 Score=176.12 Aligned_cols=158 Identities=20% Similarity=0.267 Sum_probs=117.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----------CCcEEEEeccccc--ccccchHHHHHHHHHHHHHh-cCCcEEEecccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----------KATFFCISASTLT--SKWYGEGEKMVRALFAVASV-HQPSIIFIDEID 67 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~~~~l~--~~~~~~~~~~l~~~~~~~~~-~~p~vl~iDeid 67 (343)
++|+||||||||++|+.+|..+ +..++.++...+. ..+.|+.+..++.++..+.. ..++||||||+|
T Consensus 211 ~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih 290 (852)
T TIGR03345 211 PILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAH 290 (852)
T ss_pred eeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChH
Confidence 4799999999999999999976 3557777777665 35778899999999998864 467899999999
Q ss_pred cccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCC-----chhhHHHHhccceEEEEcCCCHHHHHHHHH
Q psy4538 68 SLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRP-----QELDEAARRRLVKRLYIPLPDEQARCEIVT 142 (343)
Q Consensus 68 ~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~-----~~l~~~l~~rf~~~i~~~~P~~~er~~il~ 142 (343)
.+.+.++..... ...+.|.-.+ ..+.+.+|++|+.. ..+++++.|||. .|.++.|+.+++.+|++
T Consensus 291 ~l~~~g~~~~~~---d~~n~Lkp~l------~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~-~i~v~eps~~~~~~iL~ 360 (852)
T TIGR03345 291 TLIGAGGQAGQG---DAANLLKPAL------ARGELRTIAATTWAEYKKYFEKDPALTRRFQ-VVKVEEPDEETAIRMLR 360 (852)
T ss_pred HhccCCCccccc---cHHHHhhHHh------hCCCeEEEEecCHHHHhhhhhccHHHHHhCe-EEEeCCCCHHHHHHHHH
Confidence 998755321111 1111122222 25568899988753 358999999996 89999999999999987
Q ss_pred HHHhhh----CCCCChhhHHHHHHHCCCCC
Q psy4538 143 KLLRNI----TNSLTVDDIEEVGRMTTDFS 168 (343)
Q Consensus 143 ~~l~~~----~~~~~~~~~~~la~~t~g~s 168 (343)
.+.+.+ ...++++.+..++..+.+|.
T Consensus 361 ~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 361 GLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 666542 34567888888888877663
No 58
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.4e-20 Score=178.64 Aligned_cols=80 Identities=39% Similarity=0.608 Sum_probs=70.1
Q ss_pred cCcceEeecchhhhhcccCCC---cchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEecc
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQ---ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIP 297 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~---~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~ 297 (343)
++|||+||||+|++..+|+.+ ++..-...+||||+||||+.+ ++.|++++||||||.+|||||| |||+.|.++
T Consensus 241 ~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~--~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~ 318 (596)
T COG0465 241 NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG--NEGVIVIAATNRPDVLDPALLRPGRFDRQILVE 318 (596)
T ss_pred cCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC--CCceEEEecCCCcccchHhhcCCCCcceeeecC
Confidence 479999999999999999743 223335699999999999997 4559999999999999999999 999999999
Q ss_pred CCCCCCC
Q psy4538 298 LPDEQKV 304 (343)
Q Consensus 298 ~P~~~~r 304 (343)
+||...|
T Consensus 319 ~PDi~gR 325 (596)
T COG0465 319 LPDIKGR 325 (596)
T ss_pred CcchhhH
Confidence 9998765
No 59
>KOG0652|consensus
Probab=99.82 E-value=1.9e-20 Score=157.79 Aligned_cols=79 Identities=44% Similarity=0.618 Sum_probs=70.0
Q ss_pred CcceEeecchhhhhcccCCC---cchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEeccC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQ---ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPL 298 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~---~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~~ 298 (343)
+|||+||||+|++..+|.++ ++..-+|..-+||.+|||+++ ++.|=||+||||.|.||||||| |+|++|.||+
T Consensus 264 aP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss--~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~ 341 (424)
T KOG0652|consen 264 APTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS--DDRVKVIAATNRVDILDPALLRSGRLDRKIEFPH 341 (424)
T ss_pred CCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCC--ccceEEEeecccccccCHHHhhcccccccccCCC
Confidence 69999999999999999754 344456677789999999998 5559999999999999999999 9999999999
Q ss_pred CCCCCC
Q psy4538 299 PDEQKV 304 (343)
Q Consensus 299 P~~~~r 304 (343)
|+++.|
T Consensus 342 Pne~aR 347 (424)
T KOG0652|consen 342 PNEEAR 347 (424)
T ss_pred CChHHH
Confidence 999866
No 60
>KOG0731|consensus
Probab=99.81 E-value=3.8e-20 Score=178.81 Aligned_cols=79 Identities=39% Similarity=0.581 Sum_probs=70.8
Q ss_pred CcceEeecchhhhhcccCC----CcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEecc
Q psy4538 224 QPSIIFIDEIDSLLCQRSD----QENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIP 297 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~----~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~ 297 (343)
+|||+|+||||++.++|++ ..+.....-+||||.||||+.+. +.|+|+++|||||.||+||+| |||++|+++
T Consensus 403 aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~ 480 (774)
T KOG0731|consen 403 APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATNRPDILDPALLRPGRFDRQIQID 480 (774)
T ss_pred CCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccCCccccCHHhcCCCccccceecc
Confidence 7999999999999999952 33445678899999999999985 449999999999999999999 999999999
Q ss_pred CCCCCCC
Q psy4538 298 LPDEQKV 304 (343)
Q Consensus 298 ~P~~~~r 304 (343)
+|+...|
T Consensus 481 ~p~~~~r 487 (774)
T KOG0731|consen 481 LPDVKGR 487 (774)
T ss_pred CCchhhh
Confidence 9999876
No 61
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.81 E-value=2.1e-19 Score=150.55 Aligned_cols=162 Identities=24% Similarity=0.330 Sum_probs=114.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
+|||||||+||||||+.+|++++.++..+++..+.. ...+..++... ....||||||||.+-
T Consensus 53 ~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k------~~dl~~il~~l--~~~~ILFIDEIHRln---------- 114 (233)
T PF05496_consen 53 MLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK------AGDLAAILTNL--KEGDILFIDEIHRLN---------- 114 (233)
T ss_dssp EEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S------CHHHHHHHHT----TT-EEEECTCCC------------
T ss_pred EEEECCCccchhHHHHHHHhccCCCeEeccchhhhh------HHHHHHHHHhc--CCCcEEEEechhhcc----------
Confidence 589999999999999999999999999888755422 12233333332 356799999999883
Q ss_pred HHHHHHHHHHhhccCCC------C--------CCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHh
Q psy4538 81 SRRLKTEFLISLDGAST------L--------DDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLR 146 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~------~--------~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~ 146 (343)
+.....|+..|+...- . +-.++.+|++|.....+...+++||.....+..++.++..+|+++..+
T Consensus 115 -k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~ 193 (233)
T PF05496_consen 115 -KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSAR 193 (233)
T ss_dssp -HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCH
T ss_pred -HHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHH
Confidence 2334455555654321 0 124578999999999999999999998889999999999999999888
Q ss_pred hhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcc
Q psy4538 147 NITNSLTVDDIEEVGRMTTDFSGADMASLCREASLG 182 (343)
Q Consensus 147 ~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~ 182 (343)
.....++++....+|+++.| +++-..++++.+.-.
T Consensus 194 ~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rvrD~ 228 (233)
T PF05496_consen 194 ILNIEIDEDAAEEIARRSRG-TPRIANRLLRRVRDF 228 (233)
T ss_dssp CTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHHCCC
T ss_pred HhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHH
Confidence 88888999999999999996 899988988876433
No 62
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.81 E-value=2.9e-20 Score=156.47 Aligned_cols=110 Identities=26% Similarity=0.423 Sum_probs=90.3
Q ss_pred cCcceEeecchhhhhcccCCCc-chhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHHhhhceEeccCCCC
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQE-NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDE 301 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~-~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allRR~d~~i~~~~P~~ 301 (343)
++|||+|+||+|+++-.|+=+. .|--..+||.||++|||+.. +.+|+.|+|||+|++||||+-.||..-|.|-+|+.
T Consensus 209 ~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~e--neGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~ 286 (368)
T COG1223 209 AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKE--NEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPND 286 (368)
T ss_pred cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCccc--CCceEEEeecCChhhcCHHHHhhhhheeeeeCCCh
Confidence 4799999999999998886332 12234689999999999997 55599999999999999999889999999999999
Q ss_pred CCCCCCchhHHHHhhhhhhhhhhcHHHHHhhcCCCC
Q psy4538 302 QKVPGSNPTMDKIDQENETSRRLKTEFLISLDGAST 337 (343)
Q Consensus 302 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (343)
++| ..++..-.+..|-+....++.+-+.|++++
T Consensus 287 eEr---~~ile~y~k~~Plpv~~~~~~~~~~t~g~S 319 (368)
T COG1223 287 EER---LEILEYYAKKFPLPVDADLRYLAAKTKGMS 319 (368)
T ss_pred HHH---HHHHHHHHHhCCCccccCHHHHHHHhCCCC
Confidence 887 455666666666676677888888887765
No 63
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.81 E-value=3.3e-18 Score=173.96 Aligned_cols=158 Identities=23% Similarity=0.335 Sum_probs=115.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----------CCcEEEEeccccc--ccccchHHHHHHHHHHHHHh-cCCcEEEecccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----------KATFFCISASTLT--SKWYGEGEKMVRALFAVASV-HQPSIIFIDEID 67 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~~~~l~--~~~~~~~~~~l~~~~~~~~~-~~p~vl~iDeid 67 (343)
++|+||||+|||++++.+|..+ +.+++.++...+. ..+.|+.+..++.++..+.. ..++||||||+|
T Consensus 197 ~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih 276 (852)
T TIGR03346 197 PVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELH 276 (852)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHH
Confidence 4799999999999999999986 6778888877765 45778888899999988754 458999999999
Q ss_pred cccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCc-----hhhHHHHhccceEEEEcCCCHHHHHHHHH
Q psy4538 68 SLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ-----ELDEAARRRLVKRLYIPLPDEQARCEIVT 142 (343)
Q Consensus 68 ~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~-----~l~~~l~~rf~~~i~~~~P~~~er~~il~ 142 (343)
.+.+.+..... ....+.+...+ ..+.+.+|++|+..+ ..|+++.+||. .|.++.|+.+++..|++
T Consensus 277 ~l~~~g~~~~~---~d~~~~Lk~~l------~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~ 346 (852)
T TIGR03346 277 TLVGAGKAEGA---MDAGNMLKPAL------ARGELHCIGATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILR 346 (852)
T ss_pred HhhcCCCCcch---hHHHHHhchhh------hcCceEEEEeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHH
Confidence 99864432211 11222221111 255688999887653 57999999997 68999999999999998
Q ss_pred HHHhhhC----CCCChhhHHHHHHHCCCCC
Q psy4538 143 KLLRNIT----NSLTVDDIEEVGRMTTDFS 168 (343)
Q Consensus 143 ~~l~~~~----~~~~~~~~~~la~~t~g~s 168 (343)
.+...+. ..+.+..+..++..+.+|.
T Consensus 347 ~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi 376 (852)
T TIGR03346 347 GLKERYEVHHGVRITDPAIVAAATLSHRYI 376 (852)
T ss_pred HHHHHhccccCCCCCHHHHHHHHHhccccc
Confidence 7765532 3356666666666665553
No 64
>KOG0728|consensus
Probab=99.80 E-value=2.8e-20 Score=155.88 Aligned_cols=80 Identities=40% Similarity=0.573 Sum_probs=71.2
Q ss_pred cCcceEeecchhhhhcccCCCc---chhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEecc
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQE---NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIP 297 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~---~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~ 297 (343)
++|+|+|.|||||+...|.+++ ++.-+|..-+||++|||+++.++ +=||.||||.|.||||||| |+|++|.||
T Consensus 239 hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkn--ikvimatnridild~allrpgridrkiefp 316 (404)
T KOG0728|consen 239 HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKN--IKVIMATNRIDILDPALLRPGRIDRKIEFP 316 (404)
T ss_pred cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccc--eEEEEeccccccccHhhcCCCcccccccCC
Confidence 5899999999999999997554 34446777789999999999666 8999999999999999999 999999999
Q ss_pred CCCCCCC
Q psy4538 298 LPDEQKV 304 (343)
Q Consensus 298 ~P~~~~r 304 (343)
.|++++|
T Consensus 317 ~p~e~ar 323 (404)
T KOG0728|consen 317 PPNEEAR 323 (404)
T ss_pred CCCHHHH
Confidence 9999876
No 65
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.77 E-value=2.8e-17 Score=150.45 Aligned_cols=185 Identities=21% Similarity=0.226 Sum_probs=133.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
++|+||||+|||++|+++|++++..+...+...+.. ...+..++... ..+++|+|||+|.+...
T Consensus 54 ~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~------~~~l~~~l~~l--~~~~vl~IDEi~~l~~~-------- 117 (328)
T PRK00080 54 VLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK------PGDLAAILTNL--EEGDVLFIDEIHRLSPV-------- 117 (328)
T ss_pred EEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC------hHHHHHHHHhc--ccCCEEEEecHhhcchH--------
Confidence 589999999999999999999999887766543321 12233333332 35789999999988421
Q ss_pred HHHHHHHHHHhhccCCC--------------CCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHh
Q psy4538 81 SRRLKTEFLISLDGAST--------------LDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLR 146 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~--------------~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~ 146 (343)
... .+...++.... ..-.++.+|++|+.+..+++.+++||...+.+++|+.+++.++++..++
T Consensus 118 ~~e---~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~ 194 (328)
T PRK00080 118 VEE---ILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSAR 194 (328)
T ss_pred HHH---HHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 111 12222222110 0113477899999999999999999998899999999999999999999
Q ss_pred hhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCC
Q psy4538 147 NITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRP 214 (343)
Q Consensus 147 ~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~p 214 (343)
..+..++++.+..+++.+.| +++.+..+++.+...+... ....++.+++..++..+..
T Consensus 195 ~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~~~a~~~---------~~~~I~~~~v~~~l~~~~~ 252 (328)
T PRK00080 195 ILGVEIDEEGALEIARRSRG-TPRIANRLLRRVRDFAQVK---------GDGVITKEIADKALDMLGV 252 (328)
T ss_pred HcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHc---------CCCCCCHHHHHHHHHHhCC
Confidence 88888999999999999997 5577777777654433322 2346888888888876543
No 66
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.76 E-value=1.4e-17 Score=158.68 Aligned_cols=240 Identities=17% Similarity=0.248 Sum_probs=156.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-----CCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-----KATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSD 75 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-----~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~ 75 (343)
++||||+|+|||+|++++++++ +..++++++.++...+..........-|... ...+.+|+|||+|.+..+.
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlLiiDDi~~l~~~~-- 227 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEK-YRSVDVLLIDDIQFLAGKE-- 227 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHH-HhcCCEEEEehhhhhcCCH--
Confidence 5799999999999999999987 5668888988775543322211111122221 2357899999999885332
Q ss_pred CchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCch---hhHHHHhccc--eEEEEcCCCHHHHHHHHHHHHhhhCC
Q psy4538 76 QENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQE---LDEAARRRLV--KRLYIPLPDEQARCEIVTKLLRNITN 150 (343)
Q Consensus 76 ~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~---l~~~l~~rf~--~~i~~~~P~~~er~~il~~~l~~~~~ 150 (343)
.....++..++.... .+..+++++...|.. +++.+++||. ..+.+.+|+.++|.+|++..+...+.
T Consensus 228 -------~~~~~l~~~~n~l~~--~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~ 298 (450)
T PRK00149 228 -------RTQEEFFHTFNALHE--AGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGI 298 (450)
T ss_pred -------HHHHHHHHHHHHHHH--CCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCC
Confidence 112233333333222 223356655555554 6788999996 67999999999999999999998878
Q ss_pred CCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCC----CccccccccCcc
Q psy4538 151 SLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRP----SVCQADFVHQPS 226 (343)
Q Consensus 151 ~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~p----s~~~k~~~~~p~ 226 (343)
.++++.++.+++.+.| +.+++..+++.....+... .++++.+.+.+++..... ..+.++++..-|
T Consensus 299 ~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~----------~~~it~~~~~~~l~~~~~~~~~~~~~~~i~~~v~ 367 (450)
T PRK00149 299 DLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLT----------GKPITLELAKEALKDLLAAQKKKITIENIQKVVA 367 (450)
T ss_pred CCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhh----------CCCCCHHHHHHHHHHhhccCCCCCCHHHHHHHHH
Confidence 8999999999999885 7788887777654333221 245666666666665421 112222333333
Q ss_pred eEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCC
Q psy4538 227 IIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAS 263 (343)
Q Consensus 227 ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~ 263 (343)
=.|==..+.|.+++....-...+.+..+|+.++-+.+
T Consensus 368 ~~~~i~~~~l~~~~R~~~~~~aR~iamyl~~~~~~~s 404 (450)
T PRK00149 368 EYYNIKVSDLKSKSRTRNIARPRQIAMYLAKELTDLS 404 (450)
T ss_pred HHcCCCHHHHhCCCCCcccChHHHHHHHHHHHhcCCC
Confidence 3333344555555545555677888888888887765
No 67
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.76 E-value=5.2e-17 Score=145.28 Aligned_cols=266 Identities=21% Similarity=0.254 Sum_probs=169.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhc----CCcEEEecccccccccCCCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVH----QPSIIFIDEIDSLLCQRSDQ 76 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~----~p~vl~iDeid~l~~~~~~~ 76 (343)
++|||||||||||+|+.+|...+.+|..+++... +.+.++.+++.++.. ...||||||+|.+-...
T Consensus 51 mIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~-------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q--- 120 (436)
T COG2256 51 MILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS-------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ--- 120 (436)
T ss_pred eEEECCCCCCHHHHHHHHHHhhCCceEEeccccc-------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh---
Confidence 5899999999999999999999999999998653 455688888887433 35799999999884332
Q ss_pred chhHHHHHHHHHHHhhccCCCCCCCcEEEEEec--CCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhh--CC--
Q psy4538 77 ENETSRRLKTEFLISLDGASTLDDDLVLVIGAT--NRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNI--TN-- 150 (343)
Q Consensus 77 ~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~t--n~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~--~~-- 150 (343)
+..|+-.++ ++.+++||+| |+.-.+.++++||+. .+.+.+.+.++..+++++.+... +.
T Consensus 121 --------QD~lLp~vE------~G~iilIGATTENPsF~ln~ALlSR~~-vf~lk~L~~~di~~~l~ra~~~~~rgl~~ 185 (436)
T COG2256 121 --------QDALLPHVE------NGTIILIGATTENPSFELNPALLSRAR-VFELKPLSSEDIKKLLKRALLDEERGLGG 185 (436)
T ss_pred --------hhhhhhhhc------CCeEEEEeccCCCCCeeecHHHhhhhh-eeeeecCCHHHHHHHHHHHHhhhhcCCCc
Confidence 223554443 5567888866 667799999999997 88899999999999998854332 22
Q ss_pred ---CCChhhHHHHHHHCCCCCHHHHHHHHHH---HhcccccccccccccccCCcccChhHHHHHHHhcCCCcc--ccccc
Q psy4538 151 ---SLTVDDIEEVGRMTTDFSGADMASLCRE---ASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRPSVC--QADFV 222 (343)
Q Consensus 151 ---~~~~~~~~~la~~t~g~s~~dl~~l~~~---a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ps~~--~k~~~ 222 (343)
.++++....++..+.| |.+.+++. +...+-.. ..+..+.+.+.+.+..+... ++.
T Consensus 186 ~~~~i~~~a~~~l~~~s~G----D~R~aLN~LE~~~~~~~~~-----------~~~~~~~l~~~l~~~~~~~Dk~gD~-- 248 (436)
T COG2256 186 QIIVLDEEALDYLVRLSNG----DARRALNLLELAALSAEPD-----------EVLILELLEEILQRRSARFDKDGDA-- 248 (436)
T ss_pred ccccCCHHHHHHHHHhcCc----hHHHHHHHHHHHHHhcCCC-----------cccCHHHHHHHHhhhhhccCCCcch--
Confidence 2567788889998876 55544443 32222111 13446677776665544322 111
Q ss_pred cCcceEeecchhhhhcc-cCCCcchhHHHHHHHHHHhhcCCCCCC-CCcEEEEeecCCcccccHHHHH----hhhceEec
Q psy4538 223 HQPSIIFIDEIDSLLCQ-RSDQENETSRRLKTEFLISLDGASTLD-DDLVLVIGATNRPQELDEAARR----RLVKRLYI 296 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~-R~~~~~~~~~r~v~~lL~~mdg~~~~~-~~~v~vi~aTN~~~~lD~allR----R~d~~i~~ 296 (343)
+-|=+-++-.+ ||++-+. .+-+|.-.++|=+.-. =.+-+++.|.-..-+-||-.+. =+|-.-++
T Consensus 249 ------hYdliSA~hKSvRGSD~dA----ALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP~Al~~a~aa~da~~~l 318 (436)
T COG2256 249 ------HYDLISALHKSVRGSDPDA----ALYYLARMIEAGEDPLYIARRLVRIASEDIGLADPNALQVAVAALDAVERL 318 (436)
T ss_pred ------HHHHHHHHHHhhccCCcCH----HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHHh
Confidence 22333333322 4433322 3444444455532100 0012456666666677777666 66777788
Q ss_pred cCCCCC-----------CCCCCchhHHHHhhhh
Q psy4538 297 PLPDEQ-----------KVPGSNPTMDKIDQEN 318 (343)
Q Consensus 297 ~~P~~~-----------~r~~~~~~~~~~~~~~ 318 (343)
++|..+ --|-|+.+-..++++.
T Consensus 319 G~PE~~i~LAqavvyLA~aPKSNavY~A~~~A~ 351 (436)
T COG2256 319 GSPEARIALAQAVVYLALAPKSNAVYTAINAAL 351 (436)
T ss_pred CCchHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 888764 2555666555555443
No 68
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.75 E-value=3.6e-17 Score=139.86 Aligned_cols=160 Identities=23% Similarity=0.293 Sum_probs=123.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
+|||||||.||||||+.+|+++|.++...+...+. ....+..++... ....||||||||.+.+..
T Consensus 55 vLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le------K~gDlaaiLt~L--e~~DVLFIDEIHrl~~~v------- 119 (332)
T COG2255 55 VLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE------KPGDLAAILTNL--EEGDVLFIDEIHRLSPAV------- 119 (332)
T ss_pred EEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc------ChhhHHHHHhcC--CcCCeEEEehhhhcChhH-------
Confidence 68999999999999999999999998777766552 233344444443 356799999999984321
Q ss_pred HHHHHHHHHHhhccCC--------------CCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHh
Q psy4538 81 SRRLKTEFLISLDGAS--------------TLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLR 146 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~--------------~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~ 146 (343)
. ..++-.|+.+. ..+-.++.+||+|.+...+...++.||.....+..++.++..+|+.+..+
T Consensus 120 -E---E~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~ 195 (332)
T COG2255 120 -E---EVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAK 195 (332)
T ss_pred -H---HHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHH
Confidence 1 12223333221 01235688999999999999999999999999999999999999999999
Q ss_pred hhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHh
Q psy4538 147 NITNSLTVDDIEEVGRMTTDFSGADMASLCREAS 180 (343)
Q Consensus 147 ~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~ 180 (343)
.....++++....+|+++.| +++-...+++...
T Consensus 196 ~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVR 228 (332)
T COG2255 196 ILGIEIDEEAALEIARRSRG-TPRIANRLLRRVR 228 (332)
T ss_pred HhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHH
Confidence 99899999999999999996 7777777776653
No 69
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.75 E-value=2.4e-17 Score=155.27 Aligned_cols=239 Identities=16% Similarity=0.248 Sum_probs=151.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-----CCcEEEEecccccccccchHHH-HHHHHHHHHHhcCCcEEEecccccccccCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-----KATFFCISASTLTSKWYGEGEK-MVRALFAVASVHQPSIIFIDEIDSLLCQRS 74 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-----~~~~~~v~~~~l~~~~~~~~~~-~l~~~~~~~~~~~p~vl~iDeid~l~~~~~ 74 (343)
++||||+|+|||+|++++++++ +..++++++.++...+...... ....+.... ..+.+|+|||+|.+..+.
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlLiiDDi~~l~~~~- 215 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY--RSVDLLLIDDIQFLAGKE- 215 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH--HhCCEEEEehhhhhcCCH-
Confidence 4799999999999999999987 5778889887765443221111 111111111 346799999999885432
Q ss_pred CCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCch---hhHHHHhccc--eEEEEcCCCHHHHHHHHHHHHhhhC
Q psy4538 75 DQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQE---LDEAARRRLV--KRLYIPLPDEQARCEIVTKLLRNIT 149 (343)
Q Consensus 75 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~---l~~~l~~rf~--~~i~~~~P~~~er~~il~~~l~~~~ 149 (343)
.....++..++.... ....+++++...|.. +++.+++||. ..+.+++|+.++|.+|++..++..+
T Consensus 216 --------~~~~~l~~~~n~~~~--~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~ 285 (405)
T TIGR00362 216 --------RTQEEFFHTFNALHE--NGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEG 285 (405)
T ss_pred --------HHHHHHHHHHHHHHH--CCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 111223333332221 223355655555554 4578889996 5799999999999999999999988
Q ss_pred CCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCC----CccccccccCc
Q psy4538 150 NSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRP----SVCQADFVHQP 225 (343)
Q Consensus 150 ~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~p----s~~~k~~~~~p 225 (343)
..++++.++.+++...+ +.+++..+++.....+... .++++.+.+.+++..... ..+.+.++..-
T Consensus 286 ~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~~----------~~~it~~~~~~~L~~~~~~~~~~it~~~I~~~V 354 (405)
T TIGR00362 286 LELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASLT----------GKPITLELAKEALKDLLRAKKKEITIENIQEVV 354 (405)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh----------CCCCCHHHHHHHHHHhccccCCCCCHHHHHHHH
Confidence 88999999999998874 7788888777654433221 234565555555554321 12222222222
Q ss_pred ceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCC
Q psy4538 226 SIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAS 263 (343)
Q Consensus 226 ~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~ 263 (343)
|-.|==..+.|.+++....-...+.+..+|+.++-+.+
T Consensus 355 a~~~~v~~~~l~~~~r~~~~~~~R~~amyl~~~~~~~s 392 (405)
T TIGR00362 355 AKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELTDLS 392 (405)
T ss_pred HHHcCCCHHHHhCCCCCcccchHHHHHHHHHHHHcCCC
Confidence 22222244455555444455667888888888887765
No 70
>KOG0729|consensus
Probab=99.75 E-value=1.8e-18 Score=146.31 Aligned_cols=79 Identities=37% Similarity=0.515 Sum_probs=68.1
Q ss_pred CcceEeecchhhhhcccCCC---cchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEeccC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQ---ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPL 298 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~---~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~~ 298 (343)
..||+||||||++.|.|=++ ++..-+|..-+|+++|||+..+++ +=|+.|||||+.||||||| |+|++|.|.+
T Consensus 270 kaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgn--ikvlmatnrpdtldpallrpgrldrkvef~l 347 (435)
T KOG0729|consen 270 KACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGN--IKVLMATNRPDTLDPALLRPGRLDRKVEFGL 347 (435)
T ss_pred ceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCC--eEEEeecCCCCCcCHhhcCCcccccceeccC
Confidence 58999999999999999543 233345666689999999999777 8899999999999999999 9999999999
Q ss_pred CCCCCC
Q psy4538 299 PDEQKV 304 (343)
Q Consensus 299 P~~~~r 304 (343)
||-+-|
T Consensus 348 pdlegr 353 (435)
T KOG0729|consen 348 PDLEGR 353 (435)
T ss_pred Cccccc
Confidence 998754
No 71
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.75 E-value=8.8e-17 Score=146.02 Aligned_cols=182 Identities=22% Similarity=0.253 Sum_probs=129.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
++|+||||||||++|+++|++++..+..+....... ...+...+.. ...+.+|+|||+|.+....
T Consensus 33 ~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------~~~l~~~l~~--~~~~~vl~iDEi~~l~~~~------- 97 (305)
T TIGR00635 33 LLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------PGDLAAILTN--LEEGDVLFIDEIHRLSPAV------- 97 (305)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------chhHHHHHHh--cccCCEEEEehHhhhCHHH-------
Confidence 589999999999999999999998876665443211 1112222222 2357899999999884321
Q ss_pred HHHHHHHHHHhhccCCC--------------CCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHh
Q psy4538 81 SRRLKTEFLISLDGAST--------------LDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLR 146 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~--------------~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~ 146 (343)
...+...++.... ....++.+|++|+.+..+++++++||...+.+++|+.++..++++..++
T Consensus 98 ----~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~ 173 (305)
T TIGR00635 98 ----EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAG 173 (305)
T ss_pred ----HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHH
Confidence 1122322221110 1123478899999999999999999988899999999999999999998
Q ss_pred hhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHh
Q psy4538 147 NITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKT 211 (343)
Q Consensus 147 ~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 211 (343)
..+..++++.+..+++.+.|. ++.+..++..+...+... ....++.+.+..++..
T Consensus 174 ~~~~~~~~~al~~ia~~~~G~-pR~~~~ll~~~~~~a~~~---------~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 174 LLNVEIEPEAALEIARRSRGT-PRIANRLLRRVRDFAQVR---------GQKIINRDIALKALEM 228 (305)
T ss_pred HhCCCcCHHHHHHHHHHhCCC-cchHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHH
Confidence 888888999999999999875 466677777664433221 2245788888877765
No 72
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.74 E-value=3.6e-17 Score=156.74 Aligned_cols=240 Identities=14% Similarity=0.177 Sum_probs=156.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-----CCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-----KATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSD 75 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-----~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~ 75 (343)
++|||++|+|||+|++++|+++ +..++++++.++...+...........|.. +..++.+|+|||++.+..+..
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~-~y~~~DLLlIDDIq~l~gke~- 394 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRR-RYREMDILLVDDIQFLEDKES- 394 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHH-HhhcCCEEEEehhccccCCHH-
Confidence 5899999999999999999976 567889998887655433222211122332 234578999999998854321
Q ss_pred CchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCc---hhhHHHHhccc--eEEEEcCCCHHHHHHHHHHHHhhhCC
Q psy4538 76 QENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ---ELDEAARRRLV--KRLYIPLPDEQARCEIVTKLLRNITN 150 (343)
Q Consensus 76 ~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~---~l~~~l~~rf~--~~i~~~~P~~~er~~il~~~l~~~~~ 150 (343)
....+-.+++.+.. .++-+||.+...+. .+++.|++||. ..+.+..|+.+.|.+|++..+...+.
T Consensus 395 -----tqeeLF~l~N~l~e-----~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l 464 (617)
T PRK14086 395 -----TQEEFFHTFNTLHN-----ANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQL 464 (617)
T ss_pred -----HHHHHHHHHHHHHh-----cCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 11222233333322 12234443433333 56788999985 67899999999999999999999889
Q ss_pred CCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCCC-----ccccccccCc
Q psy4538 151 SLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRPS-----VCQADFVHQP 225 (343)
Q Consensus 151 ~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ps-----~~~k~~~~~p 225 (343)
.++++.++.|+++..+ +.++|..++......+... .++|+.+...+.++.+.+. .+-+.++..-
T Consensus 465 ~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~----------~~~itl~la~~vL~~~~~~~~~~~it~d~I~~~V 533 (617)
T PRK14086 465 NAPPEVLEFIASRISR-NIRELEGALIRVTAFASLN----------RQPVDLGLTEIVLRDLIPEDSAPEITAAAIMAAT 533 (617)
T ss_pred CCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhh----------CCCCCHHHHHHHHHHhhccccCCcCCHHHHHHHH
Confidence 9999999999999874 7788888777654333221 2446666666666554332 2223333333
Q ss_pred ceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCC
Q psy4538 226 SIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAS 263 (343)
Q Consensus 226 ~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~ 263 (343)
|-.|==..+.|.+++....-...+.+..+|+.++-+++
T Consensus 534 a~~f~v~~~dl~s~~R~~~i~~aRqiAMYL~r~lt~~S 571 (617)
T PRK14086 534 ADYFGLTVEDLCGTSRSRVLVTARQIAMYLCRELTDLS 571 (617)
T ss_pred HHHhCCCHHHHhCCCCCcccchHHHHHHHHHHHHcCCC
Confidence 43343355666666555555677888888888887765
No 73
>KOG0741|consensus
Probab=99.74 E-value=1e-18 Score=160.08 Aligned_cols=77 Identities=39% Similarity=0.586 Sum_probs=71.3
Q ss_pred ceEeecchhhhhcccCCCc--chhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEeccCCCC
Q psy4538 226 SIIFIDEIDSLLCQRSDQE--NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDE 301 (343)
Q Consensus 226 ~ilf~DEiDsl~~~R~~~~--~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~~P~~ 301 (343)
-|+.|||||+++.+||+.. .|+.+.+|||||+.|||++...+ |+|||-|||+|+||.|||| ||.-.+.+.+||+
T Consensus 326 HIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNN--ILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE 403 (744)
T KOG0741|consen 326 HIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNN--ILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDE 403 (744)
T ss_pred eEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhc--EEEEeccCchhhHHHHhcCCCceEEEEEEeCCCc
Confidence 3999999999999998654 57889999999999999998777 9999999999999999999 9999999999999
Q ss_pred CCC
Q psy4538 302 QKV 304 (343)
Q Consensus 302 ~~r 304 (343)
.-|
T Consensus 404 ~gR 406 (744)
T KOG0741|consen 404 KGR 406 (744)
T ss_pred cCc
Confidence 754
No 74
>KOG0743|consensus
Probab=99.74 E-value=2.5e-17 Score=149.67 Aligned_cols=165 Identities=25% Similarity=0.302 Sum_probs=125.8
Q ss_pred EEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCC-----
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQ----- 76 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~----- 76 (343)
|||||||||||+++.|+|+.++..++.++.++.... ..++.++... ...+||+|+|||.-+.-+...
T Consensus 239 LLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n------~dLr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~ 310 (457)
T KOG0743|consen 239 LLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD------SDLRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKE 310 (457)
T ss_pred eeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc------HHHHHHHHhC--CCCcEEEEeecccccccccccccccc
Confidence 899999999999999999999999999988776432 2266665544 456899999999875422111
Q ss_pred chh--HHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhC-CC
Q psy4538 77 ENE--TSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNIT-NS 151 (343)
Q Consensus 77 ~~~--~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~-~~ 151 (343)
... ...-.+.-||+.++++.+..+..-++|.|||..+.|||++.| |++.+|+++.-+.++-..++..++.... ..
T Consensus 311 ~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~ 390 (457)
T KOG0743|consen 311 NFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHR 390 (457)
T ss_pred cccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcc
Confidence 111 233456789999999998776777888999999999999999 9999999999999999999999987643 22
Q ss_pred CChhhHHHHHHHCCCCCHHHHHHHH
Q psy4538 152 LTVDDIEEVGRMTTDFSGADMASLC 176 (343)
Q Consensus 152 ~~~~~~~~la~~t~g~s~~dl~~l~ 176 (343)
+-+ .++.+...+. .||+++...+
T Consensus 391 L~~-eie~l~~~~~-~tPA~V~e~l 413 (457)
T KOG0743|consen 391 LFD-EIERLIEETE-VTPAQVAEEL 413 (457)
T ss_pred hhH-HHHHHhhcCc-cCHHHHHHHH
Confidence 222 3444444444 6899887654
No 75
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.73 E-value=3.1e-18 Score=159.01 Aligned_cols=80 Identities=43% Similarity=0.649 Sum_probs=70.4
Q ss_pred cCcceEeecchhhhhcccCCCc---chhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEecc
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQE---NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIP 297 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~---~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~ 297 (343)
.+||||||||+|+++++|.+.. +....+++.+||++|||+....+ |+||+|||+|+.||||++| |||++|+|+
T Consensus 237 ~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~--v~VI~aTN~~d~LDpAllR~GRfd~~I~~~ 314 (398)
T PTZ00454 237 NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN--VKVIMATNRADTLDPALLRPGRLDRKIEFP 314 (398)
T ss_pred cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC--EEEEEecCCchhCCHHHcCCCcccEEEEeC
Confidence 4799999999999999986443 34567899999999999987444 9999999999999999999 999999999
Q ss_pred CCCCCCC
Q psy4538 298 LPDEQKV 304 (343)
Q Consensus 298 ~P~~~~r 304 (343)
+|+.++|
T Consensus 315 ~P~~~~R 321 (398)
T PTZ00454 315 LPDRRQK 321 (398)
T ss_pred CcCHHHH
Confidence 9998776
No 76
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.72 E-value=1.2e-16 Score=151.06 Aligned_cols=240 Identities=14% Similarity=0.187 Sum_probs=150.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-----CCcEEEEecccccccccchHH-HHHHHHHHHHHhcCCcEEEecccccccccCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-----KATFFCISASTLTSKWYGEGE-KMVRALFAVASVHQPSIIFIDEIDSLLCQRS 74 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-----~~~~~~v~~~~l~~~~~~~~~-~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~ 74 (343)
++||||+|+|||+|++++++++ +..++++++.++...+..... ..... |......++.+|+|||++.+..+..
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~~ 211 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKTG 211 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcHH
Confidence 5899999999999999999986 457888888876554322111 11112 2222223688999999998754311
Q ss_pred CCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCch---hhHHHHhccc--eEEEEcCCCHHHHHHHHHHHHhhhC
Q psy4538 75 DQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQE---LDEAARRRLV--KRLYIPLPDEQARCEIVTKLLRNIT 149 (343)
Q Consensus 75 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~---l~~~l~~rf~--~~i~~~~P~~~er~~il~~~l~~~~ 149 (343)
....++..++.... .+..+++++...|.. +.+.+++||. ..+.+.+|+.+.|.+|++..+...+
T Consensus 212 ---------~q~elf~~~n~l~~--~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~ 280 (440)
T PRK14088 212 ---------VQTELFHTFNELHD--SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEH 280 (440)
T ss_pred ---------HHHHHHHHHHHHHH--cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcC
Confidence 11223333322222 223455555566665 4567888885 6789999999999999999998888
Q ss_pred CCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCCC------cccccccc
Q psy4538 150 NSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRPS------VCQADFVH 223 (343)
Q Consensus 150 ~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ps------~~~k~~~~ 223 (343)
..++++.+..+++.+.+ +.++|..++......+... .++++.+...++++.+... .+-+.++.
T Consensus 281 ~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~----------~~~it~~~a~~~L~~~~~~~~~~~~i~~~~I~~ 349 (440)
T PRK14088 281 GELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETT----------GEEVDLKEAILLLKDFIKPNRVKAMDPIDELIE 349 (440)
T ss_pred CCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHh----------CCCCCHHHHHHHHHHHhccccccCCCCHHHHHH
Confidence 88999999999999885 7788887776653333211 2456666666666544211 11222222
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAS 263 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~ 263 (343)
..|=.|==..+.|.+++....-...+.+..+|..++-|++
T Consensus 350 ~V~~~~~i~~~~l~s~~R~~~i~~aR~iamyl~r~~~~~s 389 (440)
T PRK14088 350 IVAKVTGVSREEILSNSRNVKALLARRIGMYVAKNYLGSS 389 (440)
T ss_pred HHHHHcCCcHHHHhCCCCCccccHHHHHHHHHHHHHhCCC
Confidence 3332232233444444444455567788888888877664
No 77
>KOG0726|consensus
Probab=99.72 E-value=5.1e-18 Score=145.20 Aligned_cols=78 Identities=46% Similarity=0.655 Sum_probs=68.7
Q ss_pred cCcceEeecchhhhhcccCCCcchh---HHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEecc
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQENET---SRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIP 297 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~~~---~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~ 297 (343)
++|+|+|+||||++..+|=+.+++. -+|..-+||++|||+.++++ |=||.|||+.+.|||||+| |+|++|.||
T Consensus 277 ~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgD--vKvimATnrie~LDPaLiRPGrIDrKIef~ 354 (440)
T KOG0726|consen 277 HAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGD--VKVIMATNRIETLDPALIRPGRIDRKIEFP 354 (440)
T ss_pred cCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCC--eEEEEecccccccCHhhcCCCccccccccC
Confidence 4799999999999999996554432 34555589999999999877 9999999999999999999 999999999
Q ss_pred CCCCC
Q psy4538 298 LPDEQ 302 (343)
Q Consensus 298 ~P~~~ 302 (343)
+||+.
T Consensus 355 ~pDe~ 359 (440)
T KOG0726|consen 355 LPDEK 359 (440)
T ss_pred CCchh
Confidence 99985
No 78
>KOG0651|consensus
Probab=99.72 E-value=4.4e-18 Score=146.78 Aligned_cols=80 Identities=44% Similarity=0.605 Sum_probs=69.8
Q ss_pred CcceEeecchhhhhcccCCC---cchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEeccC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQ---ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPL 298 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~---~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~~ 298 (343)
.|||||+||||++.|+|... .+..-+|.+.+||.+|||+...+. |-+|.|||+||.|||||+| |+|+++..|+
T Consensus 225 ~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~r--Vk~ImatNrpdtLdpaLlRpGRldrk~~iPl 302 (388)
T KOG0651|consen 225 IPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHR--VKTIMATNRPDTLDPALLRPGRLDRKVEIPL 302 (388)
T ss_pred CceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhccc--ccEEEecCCccccchhhcCCccccceeccCC
Confidence 69999999999999999432 334456778899999999998555 9999999999999999999 9999999999
Q ss_pred CCCCCCC
Q psy4538 299 PDEQKVP 305 (343)
Q Consensus 299 P~~~~r~ 305 (343)
|++..|-
T Consensus 303 pne~~r~ 309 (388)
T KOG0651|consen 303 PNEQARL 309 (388)
T ss_pred cchhhce
Confidence 9997653
No 79
>KOG0737|consensus
Probab=99.71 E-value=1.3e-17 Score=147.45 Aligned_cols=81 Identities=52% Similarity=0.795 Sum_probs=75.4
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHHhhhceEeccCCCCCC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQK 303 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allRR~d~~i~~~~P~~~~ 303 (343)
+|||||+||+|++.+.|+......+..+-+||...=||+.+.++.+|+|+||||||.-||.|++||+-+.++|++|+.++
T Consensus 186 ~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~q 265 (386)
T KOG0737|consen 186 QPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQ 265 (386)
T ss_pred CcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhh
Confidence 69999999999999999666667889999999999999998777789999999999999999999999999999999887
Q ss_pred C
Q psy4538 304 V 304 (343)
Q Consensus 304 r 304 (343)
|
T Consensus 266 R 266 (386)
T KOG0737|consen 266 R 266 (386)
T ss_pred H
Confidence 7
No 80
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=5.2e-16 Score=151.45 Aligned_cols=156 Identities=23% Similarity=0.349 Sum_probs=116.2
Q ss_pred EEeCCCCchHHHHHHHHHHHc----------CCcEEEEeccccc--ccccchHHHHHHHHHHHHHhcCCcEEEecccccc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC----------KATFFCISASTLT--SKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSL 69 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l----------~~~~~~v~~~~l~--~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l 69 (343)
+|.|+||+|||.++..+|... +..++.++...+. .+|-|+.+..++.+.++.....+.||||||+|.+
T Consensus 195 vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHti 274 (786)
T COG0542 195 VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTI 274 (786)
T ss_pred eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 689999999999999999976 5678888887775 5688999999999999998777999999999999
Q ss_pred cccCCCCch-hHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCC-----chhhHHHHhccceEEEEcCCCHHHHHHHHHH
Q psy4538 70 LCQRSDQEN-ETSRRLKTEFLISLDGASTLDDDLVLVIGATNRP-----QELDEAARRRLVKRLYIPLPDEQARCEIVTK 143 (343)
Q Consensus 70 ~~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~-----~~l~~~l~~rf~~~i~~~~P~~~er~~il~~ 143 (343)
.+..+.... .....++...+. .+.+-+||+|..- -.-|+++-|||. .|.+.-|+.++-..|++.
T Consensus 275 VGAG~~~G~a~DAaNiLKPaLA---------RGeL~~IGATT~~EYRk~iEKD~AL~RRFQ-~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 275 VGAGATEGGAMDAANLLKPALA---------RGELRCIGATTLDEYRKYIEKDAALERRFQ-KVLVDEPSVEDTIAILRG 344 (786)
T ss_pred cCCCcccccccchhhhhHHHHh---------cCCeEEEEeccHHHHHHHhhhchHHHhcCc-eeeCCCCCHHHHHHHHHH
Confidence 877654321 111222222222 4557788877432 355889999997 899999999999999986
Q ss_pred HHhh----hCCCCChhhHHHHHHHCCCC
Q psy4538 144 LLRN----ITNSLTVDDIEEVGRMTTDF 167 (343)
Q Consensus 144 ~l~~----~~~~~~~~~~~~la~~t~g~ 167 (343)
+-.. ++..++++.+...+..+..|
T Consensus 345 lk~~yE~hH~V~i~D~Al~aAv~LS~RY 372 (786)
T COG0542 345 LKERYEAHHGVRITDEALVAAVTLSDRY 372 (786)
T ss_pred HHHHHHHccCceecHHHHHHHHHHHHhh
Confidence 6543 23355676666666654433
No 81
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.70 E-value=7.5e-18 Score=159.56 Aligned_cols=78 Identities=37% Similarity=0.645 Sum_probs=70.4
Q ss_pred CcceEeecchhhhhcccCCC-cchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEeccCCC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQ-ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPD 300 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~-~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~~P~ 300 (343)
.||||||||+|+++++|+.+ ++....+++++||++|||++..++ |+||+|||+|+.||||++| |||++|+|++|+
T Consensus 289 ~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~--ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd 366 (512)
T TIGR03689 289 RPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDN--VIVIGASNREDMIDPAILRPGRLDVKIRIERPD 366 (512)
T ss_pred CCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCc--eEEEeccCChhhCCHhhcCccccceEEEeCCCC
Confidence 69999999999999999754 345678899999999999987544 9999999999999999999 999999999999
Q ss_pred CCC
Q psy4538 301 EQK 303 (343)
Q Consensus 301 ~~~ 303 (343)
.++
T Consensus 367 ~e~ 369 (512)
T TIGR03689 367 AEA 369 (512)
T ss_pred HHH
Confidence 864
No 82
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=1e-15 Score=143.22 Aligned_cols=157 Identities=20% Similarity=0.225 Sum_probs=119.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc------------------------EEEEecccccccccchHHHHHHHHHHHHH--
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT------------------------FFCISASTLTSKWYGEGEKMVRALFAVAS-- 54 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~------------------------~~~v~~~~l~~~~~~~~~~~l~~~~~~~~-- 54 (343)
+||+||+|||||++|+.+|+.+++. ++++++..- .+...++.+...+.
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~ 116 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASN------RGIENIRELRDNVKFA 116 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhc------ccHHHHHHHHHHHHhh
Confidence 4899999999999999999998763 222222110 11223344433322
Q ss_pred --hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 55 --VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 55 --~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
.....|+||||+|.+- ....+.|+..++.. ...+++|.+|+.+..+.+.+++||. .+.|..+
T Consensus 117 p~~g~~KV~IIDEah~Ls-----------~~A~NALLKtLEEP----p~~viFILaTte~~kI~~TI~SRCq-~~~f~~l 180 (484)
T PRK14956 117 PMGGKYKVYIIDEVHMLT-----------DQSFNALLKTLEEP----PAHIVFILATTEFHKIPETILSRCQ-DFIFKKV 180 (484)
T ss_pred hhcCCCEEEEEechhhcC-----------HHHHHHHHHHhhcC----CCceEEEeecCChhhccHHHHhhhh-eeeecCC
Confidence 2346799999999883 24566777777653 4578888888889999999999996 8899999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHh
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREAS 180 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~ 180 (343)
+.++..+++++.+...+..++++.+..+++.+.| +.++..+++.++.
T Consensus 181 s~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~RdAL~lLeq~i 227 (484)
T PRK14956 181 PLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SVRDMLSFMEQAI 227 (484)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hHHHHHHHHHHHH
Confidence 9999999999999988888899999999998886 6778777777654
No 83
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.70 E-value=1.3e-16 Score=160.89 Aligned_cols=174 Identities=21% Similarity=0.272 Sum_probs=122.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccc---------ccccchHHHHHHHHHHHHHhcCCcEEEecccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLT---------SKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLC 71 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~---------~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~ 71 (343)
++|+||||||||++|+++|+.++.+++.+++.... ..|.|.....+...+..+....| |++|||+|.+.+
T Consensus 350 lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~ 428 (775)
T TIGR00763 350 LCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGS 428 (775)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCC
Confidence 58999999999999999999999999999875432 23455555566667776655555 899999999975
Q ss_pred cCCCCchhHHHHHHHHHHHhhcc-----CC------CCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHH
Q psy4538 72 QRSDQENETSRRLKTEFLISLDG-----AS------TLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEI 140 (343)
Q Consensus 72 ~~~~~~~~~~~~~~~~ll~~l~~-----~~------~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~i 140 (343)
..+.. . ...|+..++. +. ..+.+++++|+|+|..+.+++++++||. .|+|+.|+.+++.+|
T Consensus 429 ~~~~~---~----~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~-vi~~~~~~~~e~~~I 500 (775)
T TIGR00763 429 SFRGD---P----ASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRME-VIELSGYTEEEKLEI 500 (775)
T ss_pred ccCCC---H----HHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCee-EEecCCCCHHHHHHH
Confidence 43221 1 1234443331 00 0123578999999999999999999996 789999999999999
Q ss_pred HHHHHh-----hh-----CCCCChhhHHHHHHH-CCCCCHHHHHHHHHHHhccc
Q psy4538 141 VTKLLR-----NI-----TNSLTVDDIEEVGRM-TTDFSGADMASLCREASLGP 183 (343)
Q Consensus 141 l~~~l~-----~~-----~~~~~~~~~~~la~~-t~g~s~~dl~~l~~~a~~~a 183 (343)
++.++. .. ...++++.+..+++. +.....+.|+..+...+..+
T Consensus 501 ~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~~~~~ 554 (775)
T TIGR00763 501 AKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIEKICRKA 554 (775)
T ss_pred HHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHHHHHHHH
Confidence 987762 11 234677788888763 44455666666555544333
No 84
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.70 E-value=3.4e-16 Score=147.65 Aligned_cols=242 Identities=14% Similarity=0.191 Sum_probs=151.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQE 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~ 77 (343)
++||||+|+|||+|++++++++ +..++++++..+...+...........|... .....+|+|||++.+.++...
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~-~~~~dvLiIDDiq~l~~k~~~-- 220 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQF-YRNVDALFIEDIEVFSGKGAT-- 220 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHH-cccCCEEEEcchhhhcCChhh--
Confidence 4799999999999999999976 6788888887664432211111011123322 245789999999987543211
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCc---hhhHHHHhccc--eEEEEcCCCHHHHHHHHHHHHhhhCCCC
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ---ELDEAARRRLV--KRLYIPLPDEQARCEIVTKLLRNITNSL 152 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~---~l~~~l~~rf~--~~i~~~~P~~~er~~il~~~l~~~~~~~ 152 (343)
...+...++.... .+..+++++...|. .+++.+++||. ..+.+.+|+.++|.+|++..+...+..+
T Consensus 221 -------qeelf~l~N~l~~--~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l 291 (445)
T PRK12422 221 -------QEEFFHTFNSLHT--EGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRI 291 (445)
T ss_pred -------HHHHHHHHHHHHH--CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 1122222222111 12345555545454 46688999995 7899999999999999999999888889
Q ss_pred ChhhHHHHHHHCCCCCHHHHHHHHHHHhc-ccccccccccccccCCcccChhHHHHHHHhcCC-----CccccccccCcc
Q psy4538 153 TVDDIEEVGRMTTDFSGADMASLCREASL-GPVRSIDLSRIDALDVRPISIDDFRDALKTVRP-----SVCQADFVHQPS 226 (343)
Q Consensus 153 ~~~~~~~la~~t~g~s~~dl~~l~~~a~~-~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~p-----s~~~k~~~~~p~ 226 (343)
+++.++.++....+ +.+++..++...+. .+.... ...+++.+...++++.+.+ ..+-+.++..-|
T Consensus 292 ~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~--------~~~~i~~~~~~~~l~~~~~~~~~~~~t~~~I~~~Va 362 (445)
T PRK12422 292 EETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKL--------SHQLLYVDDIKALLHDVLEAAESVRLTPSKIIRAVA 362 (445)
T ss_pred CHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHh--------hCCCCCHHHHHHHHHHhhhcccCCCCCHHHHHHHHH
Confidence 99999999998874 56666666655431 122211 1245777777777765421 122223333333
Q ss_pred eEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCC
Q psy4538 227 IIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAS 263 (343)
Q Consensus 227 ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~ 263 (343)
=-|==..+.|.+++....-...+.+..+|..+|-+.+
T Consensus 363 ~~~~v~~~dl~s~~R~~~i~~~Rqiamyl~r~~t~~s 399 (445)
T PRK12422 363 QYYGVSPESILGRSQSREYVLPRQVAMYLCRQKLSLS 399 (445)
T ss_pred HHhCCCHHHHhcCCCCcccccHHHHHHHHHHHhcCCC
Confidence 2233344555556555555677888888888887765
No 85
>PRK06893 DNA replication initiation factor; Validated
Probab=99.69 E-value=1.3e-15 Score=132.10 Aligned_cols=178 Identities=12% Similarity=0.160 Sum_probs=117.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQE 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~ 77 (343)
++||||||||||+|++++|+++ +....+++...... ....++... .+..+|+|||++.+.+..
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~~--~~~dlLilDDi~~~~~~~---- 107 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY--------FSPAVLENL--EQQDLVCLDDLQAVIGNE---- 107 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh--------hhHHHHhhc--ccCCEEEEeChhhhcCCh----
Confidence 4799999999999999999986 33444455432111 111222222 356799999999875322
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhh---HHHHhccc--eEEEEcCCCHHHHHHHHHHHHhhhCCCC
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELD---EAARRRLV--KRLYIPLPDEQARCEIVTKLLRNITNSL 152 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~---~~l~~rf~--~~i~~~~P~~~er~~il~~~l~~~~~~~ 152 (343)
.....+..+++.... .+..+++++++..|..++ +.+++|+. ..+.+++|+.+++.++++..+...+..+
T Consensus 108 --~~~~~l~~l~n~~~~----~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l 181 (229)
T PRK06893 108 --EWELAIFDLFNRIKE----QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIEL 181 (229)
T ss_pred --HHHHHHHHHHHHHHH----cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 111222233332221 133455666666676665 78888764 6789999999999999999998888889
Q ss_pred ChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHH
Q psy4538 153 TVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDAL 209 (343)
Q Consensus 153 ~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~ 209 (343)
+++.+..|+++..| +.+.+..++......+.. ..+++|...+++.+
T Consensus 182 ~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~----------~~~~it~~~v~~~L 227 (229)
T PRK06893 182 SDEVANFLLKRLDR-DMHTLFDALDLLDKASLQ----------AQRKLTIPFVKEIL 227 (229)
T ss_pred CHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHh----------cCCCCCHHHHHHHh
Confidence 99999999999884 667777776654322222 13468877777665
No 86
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.69 E-value=2.3e-17 Score=158.95 Aligned_cols=80 Identities=40% Similarity=0.600 Sum_probs=70.3
Q ss_pred cCcceEeecchhhhhcccCCC---cchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEecc
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQ---ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIP 297 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~---~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~ 297 (343)
.+||||||||+|+++.+|+.. .+....+++++||++|||+.+..+ |+||+|||+|+.||||++| |||+.|+|+
T Consensus 146 ~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~--v~vI~aTn~~~~ld~al~r~gRfd~~i~i~ 223 (495)
T TIGR01241 146 NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG--VIVIAATNRPDVLDPALLRPGRFDRQVVVD 223 (495)
T ss_pred cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC--eEEEEecCChhhcCHHHhcCCcceEEEEcC
Confidence 479999999999999998753 234557899999999999987444 9999999999999999999 999999999
Q ss_pred CCCCCCC
Q psy4538 298 LPDEQKV 304 (343)
Q Consensus 298 ~P~~~~r 304 (343)
+|+.++|
T Consensus 224 ~Pd~~~R 230 (495)
T TIGR01241 224 LPDIKGR 230 (495)
T ss_pred CCCHHHH
Confidence 9998765
No 87
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.69 E-value=3e-17 Score=162.00 Aligned_cols=80 Identities=36% Similarity=0.554 Sum_probs=69.9
Q ss_pred cCcceEeecchhhhhcccCCC---cchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEecc
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQ---ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIP 297 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~---~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~ 297 (343)
..||||||||+|+++.+|+.+ ......+++++||.+|||+.+. +.|+||+|||+|+.||||++| |||++|+|+
T Consensus 243 ~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~--~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~ 320 (644)
T PRK10733 243 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN--EGIIVIAATNRPDVLDPALLRPGRFDRQVVVG 320 (644)
T ss_pred cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC--CCeeEEEecCChhhcCHHHhCCcccceEEEcC
Confidence 379999999999999999753 2334568999999999999874 449999999999999999999 999999999
Q ss_pred CCCCCCC
Q psy4538 298 LPDEQKV 304 (343)
Q Consensus 298 ~P~~~~r 304 (343)
+|+.++|
T Consensus 321 ~Pd~~~R 327 (644)
T PRK10733 321 LPDVRGR 327 (644)
T ss_pred CCCHHHH
Confidence 9998654
No 88
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.68 E-value=1.2e-15 Score=144.31 Aligned_cols=241 Identities=14% Similarity=0.180 Sum_probs=154.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-----CCcEEEEecccccccccchHHH---HHHHHHHHHHhcCCcEEEeccccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-----KATFFCISASTLTSKWYGEGEK---MVRALFAVASVHQPSIIFIDEIDSLLCQ 72 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-----~~~~~~v~~~~l~~~~~~~~~~---~l~~~~~~~~~~~p~vl~iDeid~l~~~ 72 (343)
++|||++|+|||+|++++++++ +..++++++.++...+...... .+..... ......+|+|||++.+..+
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~--~~~~~dvLiIDDiq~l~~k 221 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKN--EICQNDVLIIDDVQFLSYK 221 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHH--HhccCCEEEEeccccccCC
Confidence 4799999999999999999965 4678888888876554322211 1211111 1245779999999987432
Q ss_pred CCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCch---hhHHHHhccc--eEEEEcCCCHHHHHHHHHHHHhh
Q psy4538 73 RSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQE---LDEAARRRLV--KRLYIPLPDEQARCEIVTKLLRN 147 (343)
Q Consensus 73 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~---l~~~l~~rf~--~~i~~~~P~~~er~~il~~~l~~ 147 (343)
. .....+..+++.+.. .+..+|+.+...|.. +++.+++||. ..+.+.+|+.++|.+++++.++.
T Consensus 222 ~------~~~e~lf~l~N~~~~-----~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~ 290 (450)
T PRK14087 222 E------KTNEIFFTIFNNFIE-----NDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKN 290 (450)
T ss_pred H------HHHHHHHHHHHHHHH-----cCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHh
Confidence 1 122223333333322 222344444444443 4678889985 77899999999999999999987
Q ss_pred hCC--CCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCCC----cccccc
Q psy4538 148 ITN--SLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRPS----VCQADF 221 (343)
Q Consensus 148 ~~~--~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ps----~~~k~~ 221 (343)
.+. .++++.+..+++.+.| +++.+..++......+.... ..++|+.+.+.++++.+... .+-+.+
T Consensus 291 ~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~--------~~~~it~~~v~~~l~~~~~~~~~~~t~~~I 361 (450)
T PRK14087 291 QNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNP--------EEKIITIEIVSDLFRDIPTSKLGILNVKKI 361 (450)
T ss_pred cCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhccc--------CCCCCCHHHHHHHHhhccccccCCCCHHHH
Confidence 553 6889999999999985 78888888887754443220 01457777777777655221 122233
Q ss_pred ccCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCC
Q psy4538 222 VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAS 263 (343)
Q Consensus 222 ~~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~ 263 (343)
+..-|-.|==..+.|.+++....-...+.+..+|+.++-+.+
T Consensus 362 ~~~Va~~~~i~~~dl~s~~R~~~i~~~RqiamyL~r~~t~~s 403 (450)
T PRK14087 362 KEVVSEKYGISVNAIDGKARSKSIVTARHIAMYLTKEILNHT 403 (450)
T ss_pred HHHHHHHcCCCHHHHhCCCCCccccHHHHHHHHHHHHHcCCC
Confidence 333333333345555556555555677788888888877664
No 89
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=1.9e-15 Score=146.65 Aligned_cols=158 Identities=20% Similarity=0.232 Sum_probs=120.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc------------------------EEEEecccccccccchHHHHHHHHHHHHH--
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT------------------------FFCISASTLTSKWYGEGEKMVRALFAVAS-- 54 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~------------------------~~~v~~~~l~~~~~~~~~~~l~~~~~~~~-- 54 (343)
+||+||+|+|||++++.+|+.+++. +++++..+- .+...++.+++...
T Consensus 41 yLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~------rgVDdIReLIe~a~~~ 114 (830)
T PRK07003 41 YLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASN------RGVDEMAALLERAVYA 114 (830)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEeccccc------ccHHHHHHHHHHHHhc
Confidence 4899999999999999999998752 333332211 11223444554432
Q ss_pred --hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 55 --VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 55 --~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
.....|+||||+|.|. ....+.|+..|+.. ..++.+|.+|+.+..+.+.+++||. .+.|..+
T Consensus 115 P~~gr~KVIIIDEah~LT-----------~~A~NALLKtLEEP----P~~v~FILaTtd~~KIp~TIrSRCq-~f~Fk~L 178 (830)
T PRK07003 115 PVDARFKVYMIDEVHMLT-----------NHAFNAMLKTLEEP----PPHVKFILATTDPQKIPVTVLSRCL-QFNLKQM 178 (830)
T ss_pred cccCCceEEEEeChhhCC-----------HHHHHHHHHHHHhc----CCCeEEEEEECChhhccchhhhheE-EEecCCc
Confidence 1345799999999883 23456678877764 4467888889999999999999995 8999999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhc
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASL 181 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~ 181 (343)
+.++..+.++..++..+..++++.+..|++.+.| +.++..+++.++..
T Consensus 179 s~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-smRdALsLLdQAia 226 (830)
T PRK07003 179 PAGHIVSHLERILGEERIAFEPQALRLLARAAQG-SMRDALSLTDQAIA 226 (830)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 9999999999999988888899999999999986 67777777776653
No 90
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=3.9e-15 Score=141.23 Aligned_cols=176 Identities=14% Similarity=0.193 Sum_probs=124.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC------------------------cEEEEecccccccccchHHHHHHHHHHHHH--
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA------------------------TFFCISASTLTSKWYGEGEKMVRALFAVAS-- 54 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~------------------------~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~-- 54 (343)
+||+||||||||++|+++|+.+++ .++.++++.- .+...++.+...+.
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~ 112 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYR 112 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhC
Confidence 489999999999999999999865 3444544321 11223444444332
Q ss_pred --hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 55 --VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 55 --~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
.....|++|||+|.+. ......++..++.. ...+++|++|+.+..+++.+++|+. .+.|.+|
T Consensus 113 p~~~~~kVvIIDE~h~Lt-----------~~a~~~LLk~LE~p----~~~vv~Ilattn~~kl~~~L~SR~~-vv~f~~l 176 (472)
T PRK14962 113 PMEGKYKVYIIDEVHMLT-----------KEAFNALLKTLEEP----PSHVVFVLATTNLEKVPPTIISRCQ-VIEFRNI 176 (472)
T ss_pred hhcCCeEEEEEEChHHhH-----------HHHHHHHHHHHHhC----CCcEEEEEEeCChHhhhHHHhcCcE-EEEECCc
Confidence 1245699999999873 22345667666653 3456777777778899999999996 8999999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhc
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTV 212 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 212 (343)
+.++...+++..++..+..++++.+..+++.+.| ..+.+.+.+..+...+- ..|+.+++..++...
T Consensus 177 ~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-dlR~aln~Le~l~~~~~-------------~~It~e~V~~~l~~~ 242 (472)
T PRK14962 177 SDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-GLRDALTMLEQVWKFSE-------------GKITLETVHEALGLI 242 (472)
T ss_pred cHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcC-------------CCCCHHHHHHHHcCC
Confidence 9999999999999888888999999999998875 55555555555432211 237888877776543
No 91
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=2e-15 Score=144.70 Aligned_cols=158 Identities=20% Similarity=0.234 Sum_probs=119.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC-----------------------------cEEEEecccccccccchHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA-----------------------------TFFCISASTLTSKWYGEGEKMVRALFA 51 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~-----------------------------~~~~v~~~~l~~~~~~~~~~~l~~~~~ 51 (343)
+||+||+|+|||++++.+|+.+++ .+++++..+. .+...++.+.+
T Consensus 41 ~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~------~gVDdIReLie 114 (700)
T PRK12323 41 YLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASN------RGVDEMAQLLD 114 (700)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEeccccc------CCHHHHHHHHH
Confidence 489999999999999999999976 1223332211 11233444444
Q ss_pred HHH----hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEE
Q psy4538 52 VAS----VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRL 127 (343)
Q Consensus 52 ~~~----~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i 127 (343)
... .....|+||||+|.|- ....+.|+..++.. ..++++|.+|+.+..+.+.++|||. .+
T Consensus 115 ~~~~~P~~gr~KViIIDEah~Ls-----------~~AaNALLKTLEEP----P~~v~FILaTtep~kLlpTIrSRCq-~f 178 (700)
T PRK12323 115 KAVYAPTAGRFKVYMIDEVHMLT-----------NHAFNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLSRCL-QF 178 (700)
T ss_pred HHHhchhcCCceEEEEEChHhcC-----------HHHHHHHHHhhccC----CCCceEEEEeCChHhhhhHHHHHHH-hc
Confidence 332 2346799999999883 23456788888764 4567888889999999999999995 89
Q ss_pred EEcCCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhc
Q psy4538 128 YIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASL 181 (343)
Q Consensus 128 ~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~ 181 (343)
.|..++.++..+.++..+.+.+...+++.+..+++.+.| ++++..+++.++..
T Consensus 179 ~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 179 NLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQG-SMRDALSLTDQAIA 231 (700)
T ss_pred ccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 999999999999999998887778888888889988875 77888888776543
No 92
>KOG0732|consensus
Probab=99.67 E-value=4.6e-17 Score=161.69 Aligned_cols=78 Identities=45% Similarity=0.743 Sum_probs=73.4
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEeccCCCC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDE 301 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~~P~~ 301 (343)
+|+|+||||||-|++.|+.-.......+|++||+.|||+.+++. |+||||||||+.+|||+.| |||+.+||++|+.
T Consensus 363 qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgq--VvvigATnRpda~dpaLRRPgrfdref~f~lp~~ 440 (1080)
T KOG0732|consen 363 QPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQ--VVVIGATNRPDAIDPALRRPGRFDREFYFPLPDV 440 (1080)
T ss_pred CceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCc--eEEEcccCCccccchhhcCCcccceeEeeeCCch
Confidence 69999999999999999988888888999999999999999555 9999999999999999999 9999999999987
Q ss_pred CC
Q psy4538 302 QK 303 (343)
Q Consensus 302 ~~ 303 (343)
++
T Consensus 441 ~a 442 (1080)
T KOG0732|consen 441 DA 442 (1080)
T ss_pred HH
Confidence 64
No 93
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.67 E-value=8.2e-17 Score=150.14 Aligned_cols=80 Identities=40% Similarity=0.610 Sum_probs=69.6
Q ss_pred cCcceEeecchhhhhcccCCCcc---hhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEecc
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQEN---ETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIP 297 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~---~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~ 297 (343)
.+||||||||+|+++++|++... ....+.+.+||.+|||+....+ |+||+|||+++.||+|++| |||..|+|+
T Consensus 223 ~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~--v~VI~aTn~~~~ld~allRpgRfd~~I~v~ 300 (389)
T PRK03992 223 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGN--VKIIAATNRIDILDPAILRPGRFDRIIEVP 300 (389)
T ss_pred cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCC--EEEEEecCChhhCCHHHcCCccCceEEEEC
Confidence 36999999999999999975542 3457789999999999886444 9999999999999999999 999999999
Q ss_pred CCCCCCC
Q psy4538 298 LPDEQKV 304 (343)
Q Consensus 298 ~P~~~~r 304 (343)
+|+.++|
T Consensus 301 ~P~~~~R 307 (389)
T PRK03992 301 LPDEEGR 307 (389)
T ss_pred CCCHHHH
Confidence 9998765
No 94
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.65 E-value=5.7e-17 Score=151.54 Aligned_cols=80 Identities=43% Similarity=0.591 Sum_probs=69.0
Q ss_pred cCcceEeecchhhhhcccCCCcc---hhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEecc
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQEN---ETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIP 297 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~---~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~ 297 (343)
..||||||||+|+++.+|.+..+ ....+.+.+||.+|||+....+ |.||+|||+++.||||++| |||++|+|+
T Consensus 275 ~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~--V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~ 352 (438)
T PTZ00361 275 NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD--VKVIMATNRIESLDPALIRPGRIDRKIEFP 352 (438)
T ss_pred CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC--eEEEEecCChHHhhHHhccCCeeEEEEEeC
Confidence 37999999999999999865432 3346788999999999876444 9999999999999999999 999999999
Q ss_pred CCCCCCC
Q psy4538 298 LPDEQKV 304 (343)
Q Consensus 298 ~P~~~~r 304 (343)
+||.++|
T Consensus 353 ~Pd~~~R 359 (438)
T PTZ00361 353 NPDEKTK 359 (438)
T ss_pred CCCHHHH
Confidence 9998765
No 95
>KOG0989|consensus
Probab=99.65 E-value=2.3e-15 Score=130.18 Aligned_cols=160 Identities=17% Similarity=0.195 Sum_probs=117.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC------cEEEEecccccccccchHHHHHHHHHHHHHh---------cC-CcEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA------TFFCISASTLTSKWYGEGEKMVRALFAVASV---------HQ-PSIIFID 64 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~------~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~---------~~-p~vl~iD 64 (343)
+|||||||||||+.|+++|.+++. .+.+.+.++..+..+.. ..++ -|..... .. +.|++||
T Consensus 60 ~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr--~Kik-~fakl~~~~~~~~~~~~~~fKiiIlD 136 (346)
T KOG0989|consen 60 YLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVR--EKIK-NFAKLTVLLKRSDGYPCPPFKIIILD 136 (346)
T ss_pred EEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchh--hhhc-CHHHHhhccccccCCCCCcceEEEEe
Confidence 489999999999999999999965 34555666655443221 1111 1222211 11 2699999
Q ss_pred ccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHH
Q psy4538 65 EIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKL 144 (343)
Q Consensus 65 eid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~ 144 (343)
|+|.+. ......+.+.|+.. ...+.+|..||..+.+.+.+.+|+. .+.|++...+...+.++..
T Consensus 137 Ecdsmt-----------sdaq~aLrr~mE~~----s~~trFiLIcnylsrii~pi~SRC~-KfrFk~L~d~~iv~rL~~I 200 (346)
T KOG0989|consen 137 ECDSMT-----------SDAQAALRRTMEDF----SRTTRFILICNYLSRIIRPLVSRCQ-KFRFKKLKDEDIVDRLEKI 200 (346)
T ss_pred chhhhh-----------HHHHHHHHHHHhcc----ccceEEEEEcCChhhCChHHHhhHH-HhcCCCcchHHHHHHHHHH
Confidence 999873 45566788888875 3456788889999999999999997 7889888888888999999
Q ss_pred HhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHh
Q psy4538 145 LRNITNSLTVDDIEEVGRMTTDFSGADMASLCREAS 180 (343)
Q Consensus 145 l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~ 180 (343)
+.+.+...+++.+..+++.+.| +.++....++.++
T Consensus 201 a~~E~v~~d~~al~~I~~~S~G-dLR~Ait~Lqsls 235 (346)
T KOG0989|consen 201 ASKEGVDIDDDALKLIAKISDG-DLRRAITTLQSLS 235 (346)
T ss_pred HHHhCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHhh
Confidence 9999999999999999998875 3333333444443
No 96
>PRK04195 replication factor C large subunit; Provisional
Probab=99.65 E-value=7.8e-15 Score=140.92 Aligned_cols=156 Identities=18% Similarity=0.288 Sum_probs=113.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHh------cCCcEEEecccccccccCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASV------HQPSIIFIDEIDSLLCQRS 74 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~------~~p~vl~iDeid~l~~~~~ 74 (343)
+||+||||+|||++|+++|++++.+++.+++++.... ..+..+...+.. ..+.+|+|||+|.+.....
T Consensus 42 lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d 115 (482)
T PRK04195 42 LLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED 115 (482)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc
Confidence 5899999999999999999999999999999875432 123333222211 2477999999999854211
Q ss_pred CCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhH-HHHhccceEEEEcCCCHHHHHHHHHHHHhhhCCCCC
Q psy4538 75 DQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDE-AARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLT 153 (343)
Q Consensus 75 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~-~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~ 153 (343)
......++..++.. . ..+|+++|.+..+.. .+++|+. .+.|++|+..+...+++..+...+..++
T Consensus 116 -------~~~~~aL~~~l~~~----~--~~iIli~n~~~~~~~k~Lrsr~~-~I~f~~~~~~~i~~~L~~i~~~egi~i~ 181 (482)
T PRK04195 116 -------RGGARAILELIKKA----K--QPIILTANDPYDPSLRELRNACL-MIEFKRLSTRSIVPVLKRICRKEGIECD 181 (482)
T ss_pred -------hhHHHHHHHHHHcC----C--CCEEEeccCccccchhhHhccce-EEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 12233455555422 2 235567888888877 6666664 8999999999999999999998888899
Q ss_pred hhhHHHHHHHCCCCCHHHHHHHHHHHh
Q psy4538 154 VDDIEEVGRMTTDFSGADMASLCREAS 180 (343)
Q Consensus 154 ~~~~~~la~~t~g~s~~dl~~l~~~a~ 180 (343)
++.+..+++.+.| |++.+++...
T Consensus 182 ~eaL~~Ia~~s~G----DlR~ain~Lq 204 (482)
T PRK04195 182 DEALKEIAERSGG----DLRSAINDLQ 204 (482)
T ss_pred HHHHHHHHHHcCC----CHHHHHHHHH
Confidence 9999999998765 6666655443
No 97
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=9.1e-15 Score=140.53 Aligned_cols=158 Identities=21% Similarity=0.208 Sum_probs=118.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC------------------------cEEEEecccccccccchHHHHHHHHHHHHH--
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA------------------------TFFCISASTLTSKWYGEGEKMVRALFAVAS-- 54 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~------------------------~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~-- 54 (343)
+||+||+|+|||++|+++|+.+++ .++.+++++- .....++.+.....
T Consensus 40 yLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~ 113 (702)
T PRK14960 40 YLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYA 113 (702)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhh
Confidence 489999999999999999999876 2333333221 11233444444332
Q ss_pred --hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 55 --VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 55 --~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
.....|++|||+|.|- ....+.++..++.. ...+.+|.+|+.+..+.+.+++|+. .+.|.++
T Consensus 114 P~~gk~KV~IIDEVh~LS-----------~~A~NALLKtLEEP----P~~v~FILaTtd~~kIp~TIlSRCq-~feFkpL 177 (702)
T PRK14960 114 PTQGRFKVYLIDEVHMLS-----------THSFNALLKTLEEP----PEHVKFLFATTDPQKLPITVISRCL-QFTLRPL 177 (702)
T ss_pred hhcCCcEEEEEechHhcC-----------HHHHHHHHHHHhcC----CCCcEEEEEECChHhhhHHHHHhhh-eeeccCC
Confidence 2346799999999873 23455677777754 3456677777888889899999996 8999999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhc
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASL 181 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~ 181 (343)
+.++..+.++..+++.+..++++.+..+++.+.| +.+++.+++..+..
T Consensus 178 s~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLRdALnLLDQaIa 225 (702)
T PRK14960 178 AVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLRDALSLTDQAIA 225 (702)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 9999999999999998888999999999998875 78888888776653
No 98
>KOG0740|consensus
Probab=99.65 E-value=7.8e-17 Score=147.46 Aligned_cols=81 Identities=74% Similarity=1.092 Sum_probs=77.5
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHHhhhceEeccCCCCCC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQK 303 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allRR~d~~i~~~~P~~~~ 303 (343)
+|+|+|+||+|+++.+|++.....+.|+-.++|.+++|.....+++|+||||||+|+.||.|++|||-+.+|+|+|+.+.
T Consensus 245 qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~et 324 (428)
T KOG0740|consen 245 QPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYET 324 (428)
T ss_pred CCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHH
Confidence 79999999999999999888889999999999999999998888999999999999999999999999999999999875
Q ss_pred C
Q psy4538 304 V 304 (343)
Q Consensus 304 r 304 (343)
|
T Consensus 325 r 325 (428)
T KOG0740|consen 325 R 325 (428)
T ss_pred H
Confidence 4
No 99
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.65 E-value=5.6e-15 Score=135.37 Aligned_cols=232 Identities=16% Similarity=0.245 Sum_probs=149.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-----CCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-----KATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSD 75 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-----~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~ 75 (343)
++||||.|+|||+|+++++++. +..+++++...+...++......-..-|+... +-.+++|||++.+.++...
T Consensus 116 lfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~ 193 (408)
T COG0593 116 LFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKERT 193 (408)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChhH
Confidence 5899999999999999999987 34678888877765544332222222333333 5669999999998654321
Q ss_pred CchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchh---hHHHHhccc--eEEEEcCCCHHHHHHHHHHHHhhhCC
Q psy4538 76 QENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQEL---DEAARRRLV--KRLYIPLPDEQARCEIVTKLLRNITN 150 (343)
Q Consensus 76 ~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l---~~~l~~rf~--~~i~~~~P~~~er~~il~~~l~~~~~ 150 (343)
..++...+..+.. .++-+++.+...|..+ .+.+++||. ..+.+.+|+.+.|.++++..+...+.
T Consensus 194 ---------qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~ 262 (408)
T COG0593 194 ---------QEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGI 262 (408)
T ss_pred ---------HHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCC
Confidence 2334444443333 3334566666666655 488999987 66889999999999999999999889
Q ss_pred CCChhhHHHHHHHCCCCCHHHHHHHHHHHhccccccc---cc-------ccccccCCcccChhHHHHHHHhcCCCccccc
Q psy4538 151 SLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSI---DL-------SRIDALDVRPISIDDFRDALKTVRPSVCQAD 220 (343)
Q Consensus 151 ~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~---~~-------~~~~~~~~~~i~~~d~~~a~~~~~ps~~~k~ 220 (343)
.++++.+..++++.. -+.+++..+++.....+.... .. ......... ++.+++.+.+.++.--
T Consensus 263 ~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~~~-itie~I~~~Va~~y~v----- 335 (408)
T COG0593 263 EIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRAGEK-ITIEDIQKIVAEYYNV----- 335 (408)
T ss_pred CCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhccccc-CCHHHHHHHHHHHhCC-----
Confidence 999999999999887 478888877766544433220 00 001111113 5555555555443211
Q ss_pred cccCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCC
Q psy4538 221 FVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAS 263 (343)
Q Consensus 221 ~~~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~ 263 (343)
-.+.+.+++....-...+++.++|..+|-..+
T Consensus 336 -----------~~~dl~s~~R~~~i~~~RqiamyL~r~lt~~S 367 (408)
T COG0593 336 -----------KVSDLLSKSRTRNIVRPRQIAMYLARELTNLS 367 (408)
T ss_pred -----------CHHHhhccccccccchHHHHHHHHHHHHccCc
Confidence 23445555544555566777777777766543
No 100
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.1e-15 Score=143.64 Aligned_cols=173 Identities=24% Similarity=0.351 Sum_probs=124.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccc---------ccccchHHHHHHHHHHHHHhcCCcEEEecccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLT---------SKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLC 71 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~---------~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~ 71 (343)
++|+||||+|||+|++++|+.+|..|+.++...+. ..|.|....++-+-+..+...+| +++|||||.+..
T Consensus 353 LcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~s 431 (782)
T COG0466 353 LCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGS 431 (782)
T ss_pred EEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhccC
Confidence 57999999999999999999999999999886553 34677777777777888887888 999999999965
Q ss_pred cCCCCchhHHHHHHHHHHHhhccCC-----------CCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHH
Q psy4538 72 QRSDQENETSRRLKTEFLISLDGAS-----------TLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEI 140 (343)
Q Consensus 72 ~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~i 140 (343)
.-.... . +.+|.-++--+ ..+-+.|++|+|+|..+.++..++.|+. .|+++-++.+|..+|
T Consensus 432 s~rGDP--a-----SALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRME-iI~lsgYt~~EKl~I 503 (782)
T COG0466 432 SFRGDP--A-----SALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRME-VIRLSGYTEDEKLEI 503 (782)
T ss_pred CCCCCh--H-----HHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhccee-eeeecCCChHHHHHH
Confidence 533221 1 12333332111 1134679999999999999999999997 999999999999999
Q ss_pred HHHHHhh-----h-----CCCCChhhHHHHHHHC---CCCC--HHHHHHHHHHHhcc
Q psy4538 141 VTKLLRN-----I-----TNSLTVDDIEEVGRMT---TDFS--GADMASLCREASLG 182 (343)
Q Consensus 141 l~~~l~~-----~-----~~~~~~~~~~~la~~t---~g~s--~~dl~~l~~~a~~~ 182 (343)
.+.++=. . ...++++.+..+.+.. .|.- -++|..+|+.++..
T Consensus 504 Ak~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~ 560 (782)
T COG0466 504 AKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKK 560 (782)
T ss_pred HHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHH
Confidence 9877621 1 1234666666666532 1211 14566667666544
No 101
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.64 E-value=3.9e-15 Score=143.87 Aligned_cols=187 Identities=22% Similarity=0.324 Sum_probs=128.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----------CCcEEEEeccccc--c-----cccchHHHHH---HHHHH---------
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----------KATFFCISASTLT--S-----KWYGEGEKMV---RALFA--------- 51 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~~~~l~--~-----~~~~~~~~~l---~~~~~--------- 51 (343)
+||+||||||||++|+++.+.+ +.+|+.++|.... . ...+.....+ ...+.
T Consensus 89 vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~ 168 (531)
T TIGR02902 89 VIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKP 168 (531)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccC
Confidence 5899999999999999998642 3578999986421 0 0000000000 00000
Q ss_pred -HHHhcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCC-------------------------CCCCCcEEE
Q psy4538 52 -VASVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAS-------------------------TLDDDLVLV 105 (343)
Q Consensus 52 -~~~~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------------------------~~~~~~v~v 105 (343)
.......++|||||++.+.. ..++.|+..++... ..+....++
T Consensus 169 G~l~~a~gG~L~IdEI~~L~~-----------~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI 237 (531)
T TIGR02902 169 GAVTRAHGGVLFIDEIGELHP-----------VQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLI 237 (531)
T ss_pred chhhccCCcEEEEechhhCCH-----------HHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEE
Confidence 01123467999999998842 23334444443210 011222445
Q ss_pred EEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhccccc
Q psy4538 106 IGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVR 185 (343)
Q Consensus 106 i~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~ 185 (343)
++|++.++.+++++++|+. .+.+++++.+++.++++..+++.+..++++.++.++..+. +++++.++++.|+..+..
T Consensus 238 ~ATt~~p~~L~paLrsR~~-~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~ 314 (531)
T TIGR02902 238 GATTRNPEEIPPALRSRCV-EIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALG 314 (531)
T ss_pred EEecCCcccCChHHhhhhh-eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhh
Confidence 5667889999999999986 7889999999999999999998888889989988887664 789999999998866654
Q ss_pred ccccccccccCCcccChhHHHHHHH
Q psy4538 186 SIDLSRIDALDVRPISIDDFRDALK 210 (343)
Q Consensus 186 ~~~~~~~~~~~~~~i~~~d~~~a~~ 210 (343)
+ ....|+.+|+...+.
T Consensus 315 ~---------~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 315 E---------GRKRILAEDIEWVAE 330 (531)
T ss_pred C---------CCcEEcHHHHHHHhC
Confidence 3 235699999999886
No 102
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.64 E-value=2.1e-14 Score=135.45 Aligned_cols=172 Identities=26% Similarity=0.403 Sum_probs=123.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHH----hcCCcEEEecccccccccCCCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVAS----VHQPSIIFIDEIDSLLCQRSDQ 76 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~----~~~p~vl~iDeid~l~~~~~~~ 76 (343)
++|+||||||||++|+++++.++.+++.+++.... ...++.++..+. ...+.+|+|||+|.+..
T Consensus 39 ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~-------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~----- 106 (413)
T PRK13342 39 MILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG-------VKDLREVIEEARQRRSAGRRTILFIDEIHRFNK----- 106 (413)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc-------HHHHHHHHHHHHHhhhcCCceEEEEechhhhCH-----
Confidence 58999999999999999999999999999876431 223344444332 23578999999998731
Q ss_pred chhHHHHHHHHHHHhhccCCCCCCCcEEEEEec--CCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhh--CC-C
Q psy4538 77 ENETSRRLKTEFLISLDGASTLDDDLVLVIGAT--NRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNI--TN-S 151 (343)
Q Consensus 77 ~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~t--n~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~--~~-~ 151 (343)
.....++..++. ..+++|++| |....+++.+++|+ ..+.+++++.++...+++..+... +. .
T Consensus 107 ------~~q~~LL~~le~------~~iilI~att~n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~ 173 (413)
T PRK13342 107 ------AQQDALLPHVED------GTITLIGATTENPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVE 173 (413)
T ss_pred ------HHHHHHHHHhhc------CcEEEEEeCCCChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCC
Confidence 223345555542 345666554 44558899999999 488999999999999999887653 22 6
Q ss_pred CChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhc
Q psy4538 152 LTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTV 212 (343)
Q Consensus 152 ~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 212 (343)
++++.+..+++.+.| ..+.+.+++..+... ...|+.+++...+...
T Consensus 174 i~~~al~~l~~~s~G-d~R~aln~Le~~~~~--------------~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 174 LDDEALDALARLANG-DARRALNLLELAALG--------------VDSITLELLEEALQKR 219 (413)
T ss_pred CCHHHHHHHHHhCCC-CHHHHHHHHHHHHHc--------------cCCCCHHHHHHHHhhh
Confidence 788888899998854 667777777766432 1358888888887653
No 103
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.64 E-value=1.3e-14 Score=135.04 Aligned_cols=196 Identities=21% Similarity=0.293 Sum_probs=127.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC---------CcEEEEecccccccc-------------------cc-hHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK---------ATFFCISASTLTSKW-------------------YG-EGEKMVRALFA 51 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~---------~~~~~v~~~~l~~~~-------------------~~-~~~~~l~~~~~ 51 (343)
++|+||||||||++++.+++++. ..+++++|....+.+ .+ .....+..++.
T Consensus 43 i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 122 (365)
T TIGR02928 43 VFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYK 122 (365)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHH
Confidence 58999999999999999998763 568888886543210 00 11222334444
Q ss_pred HHH-hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCc---hhhHHHHhccc-eE
Q psy4538 52 VAS-VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ---ELDEAARRRLV-KR 126 (343)
Q Consensus 52 ~~~-~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~---~l~~~l~~rf~-~~ 126 (343)
... ...+.||+|||+|.+.... ...+..++.... ....++.++.+|+++|.+. .+++.+.+||. ..
T Consensus 123 ~l~~~~~~~vlvIDE~d~L~~~~--------~~~L~~l~~~~~-~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~ 193 (365)
T TIGR02928 123 ELNERGDSLIIVLDEIDYLVGDD--------DDLLYQLSRARS-NGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEE 193 (365)
T ss_pred HHHhcCCeEEEEECchhhhccCC--------cHHHHhHhcccc-ccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcce
Confidence 332 2456799999999996221 112333333211 1222346788899998875 57778888886 57
Q ss_pred EEEcCCCHHHHHHHHHHHHhh--hCCCCChhhHHHHHHH---CCCCCHHHHHHHHHHHhcccccccccccccccCCcccC
Q psy4538 127 LYIPLPDEQARCEIVTKLLRN--ITNSLTVDDIEEVGRM---TTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPIS 201 (343)
Q Consensus 127 i~~~~P~~~er~~il~~~l~~--~~~~~~~~~~~~la~~---t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~ 201 (343)
+.|++|+.++..+|++..++. ....++++.+..++.. +.| ..+.+..+|+.|...|..+ +...|+
T Consensus 194 i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~---------~~~~it 263 (365)
T TIGR02928 194 IIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHG-DARKAIDLLRVAGEIAERE---------GAERVT 263 (365)
T ss_pred eeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc---------CCCCCC
Confidence 999999999999999998863 2234566655555544 344 4555666777777666543 345699
Q ss_pred hhHHHHHHHhcCCC
Q psy4538 202 IDDFRDALKTVRPS 215 (343)
Q Consensus 202 ~~d~~~a~~~~~ps 215 (343)
.+++..++..+..+
T Consensus 264 ~~~v~~a~~~~~~~ 277 (365)
T TIGR02928 264 EDHVEKAQEKIEKD 277 (365)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888777433
No 104
>PRK08727 hypothetical protein; Validated
Probab=99.64 E-value=9.6e-15 Score=127.04 Aligned_cols=179 Identities=20% Similarity=0.257 Sum_probs=115.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQE 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~ 77 (343)
++|+||+|||||++++++++++ |....+++..++.. .+...+... .+..+|+|||++.+..+..
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l--~~~dlLiIDDi~~l~~~~~--- 110 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEAL--EGRSLVALDGLESIAGQRE--- 110 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHH--hcCCEEEEeCcccccCChH---
Confidence 5799999999999999998765 55666666544322 222333332 3567999999998854321
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchh---hHHHHhcc--ceEEEEcCCCHHHHHHHHHHHHhhhCCCC
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQEL---DEAARRRL--VKRLYIPLPDEQARCEIVTKLLRNITNSL 152 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l---~~~l~~rf--~~~i~~~~P~~~er~~il~~~l~~~~~~~ 152 (343)
. ...+-.+++.... .+.-+++.+...|..+ .+.+++|+ ...+.+++|+.+++.++++..+...+..+
T Consensus 111 --~-~~~lf~l~n~~~~-----~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l 182 (233)
T PRK08727 111 --D-EVALFDFHNRARA-----AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLAL 182 (233)
T ss_pred --H-HHHHHHHHHHHHH-----cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 1 1122233333221 1222444444556655 68899997 46789999999999999999888777889
Q ss_pred ChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHh
Q psy4538 153 TVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKT 211 (343)
Q Consensus 153 ~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 211 (343)
+++.+..|++++.| ..+.+.++++.....+... .+++|...+++.+..
T Consensus 183 ~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~----------~~~it~~~~~~~l~~ 230 (233)
T PRK08727 183 DEAAIDWLLTHGER-ELAGLVALLDRLDRESLAA----------KRRVTVPFLRRVLEE 230 (233)
T ss_pred CHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh----------CCCCCHHHHHHHHhh
Confidence 99999999999874 4444444455432212211 245787777776643
No 105
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=2e-14 Score=137.01 Aligned_cols=159 Identities=18% Similarity=0.211 Sum_probs=119.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcE----------------------------EEEecccccccccchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATF----------------------------FCISASTLTSKWYGEGEKMVRALFAV 52 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~----------------------------~~v~~~~l~~~~~~~~~~~l~~~~~~ 52 (343)
+||+||+|+|||++|+.+|+.+++.. +++++.. ..+...++.++..
T Consensus 46 ~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~ 119 (507)
T PRK06645 46 YLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIES 119 (507)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHH
Confidence 48999999999999999999987632 1111110 1223445666655
Q ss_pred HHh----cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEE
Q psy4538 53 ASV----HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLY 128 (343)
Q Consensus 53 ~~~----~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~ 128 (343)
+.. ....|++|||+|.+. ....+.|+..++.. ...+++|.+|+.+..+.+.+++|+. .++
T Consensus 120 a~~~P~~~~~KVvIIDEa~~Ls-----------~~a~naLLk~LEep----p~~~vfI~aTte~~kI~~tI~SRc~-~~e 183 (507)
T PRK06645 120 AEYKPLQGKHKIFIIDEVHMLS-----------KGAFNALLKTLEEP----PPHIIFIFATTEVQKIPATIISRCQ-RYD 183 (507)
T ss_pred HHhccccCCcEEEEEEChhhcC-----------HHHHHHHHHHHhhc----CCCEEEEEEeCChHHhhHHHHhcce-EEE
Confidence 532 345699999999873 23355677776643 4456777777888899999999995 899
Q ss_pred EcCCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcc
Q psy4538 129 IPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLG 182 (343)
Q Consensus 129 ~~~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~ 182 (343)
|..++.++..++++..++..+..++++.+..+++.+.| +.+++.+++..+...
T Consensus 184 f~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-slR~al~~Ldkai~~ 236 (507)
T PRK06645 184 LRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SARDAVSILDQAASM 236 (507)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 99999999999999999988888899899999998876 888888888877543
No 106
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.63 E-value=2.3e-14 Score=124.76 Aligned_cols=178 Identities=12% Similarity=0.082 Sum_probs=116.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC---CcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK---ATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQE 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~---~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~ 77 (343)
++||||+|||||+|++++++++. ..+.+++....... ...+.+... +..+|+|||++.+..+.
T Consensus 48 l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~--~~dlliiDdi~~~~~~~---- 113 (235)
T PRK08084 48 IYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF--------VPEVLEGME--QLSLVCIDNIECIAGDE---- 113 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh--------hHHHHHHhh--hCCEEEEeChhhhcCCH----
Confidence 47999999999999999998763 44555555442211 111122111 23689999999874321
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCch---hhHHHHhccc--eEEEEcCCCHHHHHHHHHHHHhhhCCCC
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQE---LDEAARRRLV--KRLYIPLPDEQARCEIVTKLLRNITNSL 152 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~---l~~~l~~rf~--~~i~~~~P~~~er~~il~~~l~~~~~~~ 152 (343)
.....+..+++.+... +...+++.+++.|.. +.+.+++|+. ..+.+.+|+.+++.++++..+...+..+
T Consensus 114 --~~~~~lf~l~n~~~e~----g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l 187 (235)
T PRK08084 114 --LWEMAIFDLYNRILES----GRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFEL 187 (235)
T ss_pred --HHHHHHHHHHHHHHHc----CCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCC
Confidence 1122222333322111 212345555566655 5789999985 7899999999999999998788777889
Q ss_pred ChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHH
Q psy4538 153 TVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDAL 209 (343)
Q Consensus 153 ~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~ 209 (343)
+++.++.|+++..+ +.+.+..+++.....+... .++||.+-+++++
T Consensus 188 ~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~----------~~~it~~~~k~~l 233 (235)
T PRK08084 188 PEDVGRFLLKRLDR-EMRTLFMTLDQLDRASITA----------QRKLTIPFVKEIL 233 (235)
T ss_pred CHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHhc----------CCCCCHHHHHHHH
Confidence 99999999999985 7777777777643222221 2457777766654
No 107
>PLN03025 replication factor C subunit; Provisional
Probab=99.63 E-value=1.1e-14 Score=132.76 Aligned_cols=154 Identities=18% Similarity=0.167 Sum_probs=109.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC-----CcEEEEecccccccccchHHHHHHHHHHHH---H----hcCCcEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK-----ATFFCISASTLTSKWYGEGEKMVRALFAVA---S----VHQPSIIFIDEIDS 68 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~-----~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~---~----~~~p~vl~iDeid~ 68 (343)
+||+||||||||++|+++|+++. ..++.+++++..+. ..++...... . ...+.+++|||+|.
T Consensus 37 lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~ 110 (319)
T PLN03025 37 LILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADS 110 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhh
Confidence 48999999999999999999973 24666666554221 1222222211 1 12367999999998
Q ss_pred ccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhh
Q psy4538 69 LLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNI 148 (343)
Q Consensus 69 l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~ 148 (343)
+.. ...+.++..++... ....++.++|....+.+.+++|+. .+.|++|+.++..+.++..+++.
T Consensus 111 lt~-----------~aq~aL~~~lE~~~----~~t~~il~~n~~~~i~~~L~SRc~-~i~f~~l~~~~l~~~L~~i~~~e 174 (319)
T PLN03025 111 MTS-----------GAQQALRRTMEIYS----NTTRFALACNTSSKIIEPIQSRCA-IVRFSRLSDQEILGRLMKVVEAE 174 (319)
T ss_pred cCH-----------HHHHHHHHHHhccc----CCceEEEEeCCccccchhHHHhhh-cccCCCCCHHHHHHHHHHHHHHc
Confidence 832 22344556565432 223456678888888899999985 89999999999999999999998
Q ss_pred CCCCChhhHHHHHHHCCCCCHHHHHHHHH
Q psy4538 149 TNSLTVDDIEEVGRMTTDFSGADMASLCR 177 (343)
Q Consensus 149 ~~~~~~~~~~~la~~t~g~s~~dl~~l~~ 177 (343)
+..++++.+..+++.+.| ..+.+.+.++
T Consensus 175 gi~i~~~~l~~i~~~~~g-DlR~aln~Lq 202 (319)
T PLN03025 175 KVPYVPEGLEAIIFTADG-DMRQALNNLQ 202 (319)
T ss_pred CCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 888999999999998774 4444444444
No 108
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.63 E-value=5e-15 Score=127.39 Aligned_cols=165 Identities=19% Similarity=0.281 Sum_probs=108.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-----CCcEEEEecccccccccchHHH-HHHHHHHHHHhcCCcEEEecccccccccCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-----KATFFCISASTLTSKWYGEGEK-MVRALFAVASVHQPSIIFIDEIDSLLCQRS 74 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-----~~~~~~v~~~~l~~~~~~~~~~-~l~~~~~~~~~~~p~vl~iDeid~l~~~~~ 74 (343)
++||||+|+|||+|++++++++ +..++++++.++...+...... .+..+... .....+|+|||++.+..+
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~--~~~~DlL~iDDi~~l~~~-- 112 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDR--LRSADLLIIDDIQFLAGK-- 112 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHH--HCTSSEEEEETGGGGTTH--
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhh--hhcCCEEEEecchhhcCc--
Confidence 4799999999999999999875 5678889888876543222111 11122222 235779999999988532
Q ss_pred CCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCc---hhhHHHHhccc--eEEEEcCCCHHHHHHHHHHHHhhhC
Q psy4538 75 DQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ---ELDEAARRRLV--KRLYIPLPDEQARCEIVTKLLRNIT 149 (343)
Q Consensus 75 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~---~l~~~l~~rf~--~~i~~~~P~~~er~~il~~~l~~~~ 149 (343)
......+...++.... .++-+++++...|. .+.+.+++|+. ..+.+.+|+.+.|.++++..+...+
T Consensus 113 -------~~~q~~lf~l~n~~~~--~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~ 183 (219)
T PF00308_consen 113 -------QRTQEELFHLFNRLIE--SGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERG 183 (219)
T ss_dssp -------HHHHHHHHHHHHHHHH--TTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT
T ss_pred -------hHHHHHHHHHHHHHHh--hCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhC
Confidence 1223334444333322 23345555555554 45688999886 6789999999999999999999999
Q ss_pred CCCChhhHHHHHHHCCCCCHHHHHHHHHHH
Q psy4538 150 NSLTVDDIEEVGRMTTDFSGADMASLCREA 179 (343)
Q Consensus 150 ~~~~~~~~~~la~~t~g~s~~dl~~l~~~a 179 (343)
..++++.++.+++... -+.++|..+++..
T Consensus 184 ~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l 212 (219)
T PF00308_consen 184 IELPEEVIEYLARRFR-RDVRELEGALNRL 212 (219)
T ss_dssp --S-HHHHHHHHHHTT-SSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhhc-CCHHHHHHHHHHH
Confidence 9999999999999987 4788888877654
No 109
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=1.3e-14 Score=139.10 Aligned_cols=159 Identities=19% Similarity=0.196 Sum_probs=119.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc------------------------EEEEecccccccccchHHHHHHHHHHHHH--
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT------------------------FFCISASTLTSKWYGEGEKMVRALFAVAS-- 54 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~------------------------~~~v~~~~l~~~~~~~~~~~l~~~~~~~~-- 54 (343)
+||+||+|+|||++|+.+|+.+++. ++++++..- .....++.+.....
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~ 114 (509)
T PRK14958 41 YLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYA 114 (509)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhc
Confidence 4899999999999999999999753 344443321 12223444444332
Q ss_pred --hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 55 --VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 55 --~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
.....|++|||+|.+. ....+.++..++.. ...+.+|.+|+.+..+.+.+++|+. .++|.++
T Consensus 115 p~~~~~kV~iIDE~~~ls-----------~~a~naLLk~LEep----p~~~~fIlattd~~kl~~tI~SRc~-~~~f~~l 178 (509)
T PRK14958 115 PTKGRFKVYLIDEVHMLS-----------GHSFNALLKTLEEP----PSHVKFILATTDHHKLPVTVLSRCL-QFHLAQL 178 (509)
T ss_pred cccCCcEEEEEEChHhcC-----------HHHHHHHHHHHhcc----CCCeEEEEEECChHhchHHHHHHhh-hhhcCCC
Confidence 2345699999999883 23456678877764 3456677777788889888999995 8899999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcc
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLG 182 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~ 182 (343)
+.++..+.++..++..+..++++.+..+++.+.| +.+++.+++.++...
T Consensus 179 ~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR~al~lLdq~ia~ 227 (509)
T PRK14958 179 PPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SVRDALSLLDQSIAY 227 (509)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHhc
Confidence 9999999999999988888899899999998875 888998888776543
No 110
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=1.9e-14 Score=139.88 Aligned_cols=157 Identities=22% Similarity=0.235 Sum_probs=118.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc------------------------EEEEecccccccccchHHHHHHHHHHHHH--
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT------------------------FFCISASTLTSKWYGEGEKMVRALFAVAS-- 54 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~------------------------~~~v~~~~l~~~~~~~~~~~l~~~~~~~~-- 54 (343)
+||+||+|+|||++|+.+|+.+++. +++++...- .....++.+.....
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~ 114 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYA 114 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhh
Confidence 3799999999999999999999763 233332210 11223444443332
Q ss_pred --hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 55 --VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 55 --~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
.....|+||||+|.|- ....+.|+..++.. ...+.+|.+|+.+..+.+.+++|| ..+.|.++
T Consensus 115 p~~g~~KV~IIDEah~Ls-----------~~a~NALLKtLEEP----p~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~L 178 (647)
T PRK07994 115 PARGRFKVYLIDEVHMLS-----------RHSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILSRC-LQFHLKAL 178 (647)
T ss_pred hhcCCCEEEEEechHhCC-----------HHHHHHHHHHHHcC----CCCeEEEEecCCccccchHHHhhh-eEeeCCCC
Confidence 2346799999999883 34567788888864 446677777888889999999998 48999999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHh
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREAS 180 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~ 180 (343)
+.++..+.++..+...+...++..+..+++.+.| +.++..+++..+.
T Consensus 179 s~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R~Al~lldqai 225 (647)
T PRK07994 179 DVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMRDALSLTDQAI 225 (647)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9999999999999887778888889999998875 7778888887664
No 111
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=2.2e-14 Score=132.96 Aligned_cols=175 Identities=19% Similarity=0.197 Sum_probs=124.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc------------------------EEEEecccccccccchHHHHHHHHHHHHHh-
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT------------------------FFCISASTLTSKWYGEGEKMVRALFAVASV- 55 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~------------------------~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~- 55 (343)
+||+||+|+|||++|+++|+.+++. ++.+++.. ......++.+......
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~ 114 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYS 114 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcC
Confidence 4799999999999999999998642 12222111 0122334444444321
Q ss_pred ---cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 56 ---HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 56 ---~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
....|++|||+|.+. ....+.++..++.. ...+.+|.+|+.+..+.+.+++|+. .+++++|
T Consensus 115 p~~~~~kviIIDEa~~l~-----------~~a~naLLk~lEe~----~~~~~fIl~t~~~~~l~~tI~SRc~-~~~~~~l 178 (363)
T PRK14961 115 PSKSRFKVYLIDEVHMLS-----------RHSFNALLKTLEEP----PQHIKFILATTDVEKIPKTILSRCL-QFKLKII 178 (363)
T ss_pred cccCCceEEEEEChhhcC-----------HHHHHHHHHHHhcC----CCCeEEEEEcCChHhhhHHHHhhce-EEeCCCC
Confidence 234699999999872 22345577777654 3355666677778889999999995 8999999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHh
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKT 211 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 211 (343)
+.++..++++..++..+..++++.+..++..+.| +++++.+++..+.... ...++.+++.+.+..
T Consensus 179 ~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~al~~l~~~~~~~-------------~~~It~~~v~~~l~~ 243 (363)
T PRK14961 179 SEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDALNLLEHAINLG-------------KGNINIKNVTDMLGL 243 (363)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc-------------CCCCCHHHHHHHHCC
Confidence 9999999999999888878899899999998875 7778888877764322 134777777666643
No 112
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=2.6e-14 Score=141.30 Aligned_cols=157 Identities=19% Similarity=0.222 Sum_probs=117.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcE------------------------EEEecccccccccchHHHHHHHHHHHHH--
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATF------------------------FCISASTLTSKWYGEGEKMVRALFAVAS-- 54 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~------------------------~~v~~~~l~~~~~~~~~~~l~~~~~~~~-- 54 (343)
+||+||+|||||++|+.+|+.+++.. ++++..+ ......++.+.....
T Consensus 41 yLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~ 114 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYR 114 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhh
Confidence 37999999999999999999997641 1111110 011223444443332
Q ss_pred --hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 55 --VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 55 --~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
.....|+||||+|.|- ....+.|+..++.. ...+.+|.+|+.+..+.+.+++||. .+.|.++
T Consensus 115 P~~gk~KViIIDEAh~LT-----------~eAqNALLKtLEEP----P~~vrFILaTTe~~kLl~TIlSRCq-~f~fkpL 178 (944)
T PRK14949 115 PSRGRFKVYLIDEVHMLS-----------RSSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTVLSRCL-QFNLKSL 178 (944)
T ss_pred hhcCCcEEEEEechHhcC-----------HHHHHHHHHHHhcc----CCCeEEEEECCCchhchHHHHHhhe-EEeCCCC
Confidence 2345799999999882 34567788888764 4456677778888889999999995 8999999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHh
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREAS 180 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~ 180 (343)
+.++..+++++.+...+..++++.+..+++.+.| +++++.+++..+.
T Consensus 179 s~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~ALnLLdQal 225 (944)
T PRK14949 179 TQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDALSLTDQAI 225 (944)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9999999999999887778888899999998875 7788888887665
No 113
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.62 E-value=3.5e-16 Score=162.15 Aligned_cols=77 Identities=25% Similarity=0.216 Sum_probs=64.1
Q ss_pred cCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCC-CCCCcEEEEeecCCcccccHHHHH--hhhceEeccCC
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAST-LDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLP 299 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~-~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~~P 299 (343)
.+||||||||||+|.++.+ ....+++||++|||... ....+|+||||||+||.|||||+| |||+.|+|+.|
T Consensus 1731 ~SPCIIFIDEIDaL~~~ds------~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~P 1804 (2281)
T CHL00206 1731 MSPCIIWIPNIHDLNVNES------NYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRL 1804 (2281)
T ss_pred CCCeEEEEEchhhcCCCcc------ceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCC
Confidence 5899999999999987621 11248999999998742 224459999999999999999999 99999999999
Q ss_pred CCCCCC
Q psy4538 300 DEQKVP 305 (343)
Q Consensus 300 ~~~~r~ 305 (343)
+..+|.
T Consensus 1805 d~p~R~ 1810 (2281)
T CHL00206 1805 LIPQQR 1810 (2281)
T ss_pred CchhHH
Confidence 987653
No 114
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.62 E-value=1.3e-14 Score=136.46 Aligned_cols=198 Identities=19% Similarity=0.274 Sum_probs=132.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-----CCcEEEEeccccccc----------cc-------c-hHHHHHHHHHHHHH-hc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-----KATFFCISASTLTSK----------WY-------G-EGEKMVRALFAVAS-VH 56 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-----~~~~~~v~~~~l~~~----------~~-------~-~~~~~l~~~~~~~~-~~ 56 (343)
++|+||||+|||++++.+++++ +..+++++|....+. .. + .....+..+..... ..
T Consensus 58 ~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (394)
T PRK00411 58 VLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERD 137 (394)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 5799999999999999999887 577889988654221 00 1 11222333333332 23
Q ss_pred CCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCc---hhhHHHHhccc-eEEEEcCC
Q psy4538 57 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ---ELDEAARRRLV-KRLYIPLP 132 (343)
Q Consensus 57 ~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~---~l~~~l~~rf~-~~i~~~~P 132 (343)
.+.||+|||+|.+..... ...+..++..+... ...++.+|+++|... .+++.+.+|+. ..+.|+++
T Consensus 138 ~~~viviDE~d~l~~~~~-------~~~l~~l~~~~~~~---~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py 207 (394)
T PRK00411 138 RVLIVALDDINYLFEKEG-------NDVLYSLLRAHEEY---PGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPY 207 (394)
T ss_pred CEEEEEECCHhHhhccCC-------chHHHHHHHhhhcc---CCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCC
Confidence 467999999999862111 12344455444433 233677888877653 46777888775 57899999
Q ss_pred CHHHHHHHHHHHHhhh--CCCCChhhHHHHHHHCCCC--CHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHH
Q psy4538 133 DEQARCEIVTKLLRNI--TNSLTVDDIEEVGRMTTDF--SGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDA 208 (343)
Q Consensus 133 ~~~er~~il~~~l~~~--~~~~~~~~~~~la~~t~g~--s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a 208 (343)
+.++..++++..++.. ...++++.++.+++.+.+. ..+.+..++..|...|..+ +...|+.+|+..+
T Consensus 208 ~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~---------~~~~I~~~~v~~a 278 (394)
T PRK00411 208 TADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE---------GSRKVTEEDVRKA 278 (394)
T ss_pred CHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHH
Confidence 9999999999887642 2356777888888877432 3445557777776655543 3467999999999
Q ss_pred HHhcCCCcc
Q psy4538 209 LKTVRPSVC 217 (343)
Q Consensus 209 ~~~~~ps~~ 217 (343)
+..+.++..
T Consensus 279 ~~~~~~~~~ 287 (394)
T PRK00411 279 YEKSEIVHL 287 (394)
T ss_pred HHHHHHHHH
Confidence 988865543
No 115
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.62 E-value=8.8e-15 Score=127.03 Aligned_cols=177 Identities=15% Similarity=0.204 Sum_probs=118.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQE 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~ 77 (343)
++|+||+|||||++|+++++++ +.+++++++..+.... ..++... ..+.+|+|||+|.+....
T Consensus 41 lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~--~~~~lLvIDdi~~l~~~~---- 106 (226)
T TIGR03420 41 LYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGL--EQADLVCLDDVEAIAGQP---- 106 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhc--ccCCEEEEeChhhhcCCh----
Confidence 5899999999999999999876 4678888887775321 1222222 235699999999874221
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhh---HHHHhccc--eEEEEcCCCHHHHHHHHHHHHhhhCCCC
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELD---EAARRRLV--KRLYIPLPDEQARCEIVTKLLRNITNSL 152 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~---~~l~~rf~--~~i~~~~P~~~er~~il~~~l~~~~~~~ 152 (343)
.. ...+..++..+... + ..+++.++..+..++ +.+.+|+. ..+.+++|+.+++..+++.++.+.+..+
T Consensus 107 -~~-~~~L~~~l~~~~~~----~-~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~ 179 (226)
T TIGR03420 107 -EW-QEALFHLYNRVREA----G-GRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQL 179 (226)
T ss_pred -HH-HHHHHHHHHHHHHc----C-CeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 01 12222233322211 1 234444443443332 67887774 6899999999999999999888777888
Q ss_pred ChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHH
Q psy4538 153 TVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDAL 209 (343)
Q Consensus 153 ~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~ 209 (343)
+++.+..|++. .+.+.+++.++++.+...+.+. ...|+.+-+.+.+
T Consensus 180 ~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~~----------~~~i~~~~~~~~~ 225 (226)
T TIGR03420 180 PDEVADYLLRH-GSRDMGSLMALLDALDRASLAA----------KRKITIPFVKEVL 225 (226)
T ss_pred CHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHh----------CCCCCHHHHHHHh
Confidence 99999999996 4569999999988865443332 2456666655543
No 116
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.62 E-value=6.4e-15 Score=149.57 Aligned_cols=157 Identities=21% Similarity=0.328 Sum_probs=115.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----------CCcEEEEeccccc--ccccchHHHHHHHHHHHHH-hcCCcEEEecccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----------KATFFCISASTLT--SKWYGEGEKMVRALFAVAS-VHQPSIIFIDEID 67 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~~~~l~--~~~~~~~~~~l~~~~~~~~-~~~p~vl~iDeid 67 (343)
++|+||||||||++|+.+|..+ +.+++.++...+. .++.|+.+..++.+|.... ...++||||||+|
T Consensus 202 ~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih 281 (857)
T PRK10865 202 PVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELH 281 (857)
T ss_pred eEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHH
Confidence 4799999999999999999988 7788888888765 4577888999999998754 3568899999999
Q ss_pred cccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCc-----hhhHHHHhccceEEEEcCCCHHHHHHHHH
Q psy4538 68 SLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ-----ELDEAARRRLVKRLYIPLPDEQARCEIVT 142 (343)
Q Consensus 68 ~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~-----~l~~~l~~rf~~~i~~~~P~~~er~~il~ 142 (343)
.+.+.++..... ...+.|.-.+ ..+.+.+|++|+..+ ..|+++.+||. .|.++.|+.+++..|++
T Consensus 282 ~l~~~~~~~~~~---d~~~~lkp~l------~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~ 351 (857)
T PRK10865 282 TMVGAGKADGAM---DAGNMLKPAL------ARGELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILR 351 (857)
T ss_pred HhccCCCCccch---hHHHHhcchh------hcCCCeEEEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHH
Confidence 998665332211 1112221111 256788999887765 48999999997 68899999999999998
Q ss_pred HHHhhh----CCCCChhhHHHHHHHCCCC
Q psy4538 143 KLLRNI----TNSLTVDDIEEVGRMTTDF 167 (343)
Q Consensus 143 ~~l~~~----~~~~~~~~~~~la~~t~g~ 167 (343)
.+...+ +..++++.+...+..+..|
T Consensus 352 ~l~~~~e~~~~v~~~d~a~~~a~~ls~ry 380 (857)
T PRK10865 352 GLKERYELHHHVQITDPAIVAAATLSHRY 380 (857)
T ss_pred HHhhhhccCCCCCcCHHHHHHHHHHhhcc
Confidence 776543 2344555555554444333
No 117
>PRK06620 hypothetical protein; Validated
Probab=99.62 E-value=2.3e-14 Score=122.70 Aligned_cols=163 Identities=13% Similarity=0.196 Sum_probs=109.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
++||||||+|||+|++++++..+..++. .... . ... .....+|+|||+|.+-
T Consensus 47 l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-------~----~~~-----~~~~d~lliDdi~~~~---------- 98 (214)
T PRK06620 47 LLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-------N----EEI-----LEKYNAFIIEDIENWQ---------- 98 (214)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-------c----hhH-----HhcCCEEEEeccccch----------
Confidence 4899999999999999999988753322 1110 0 011 1234699999999541
Q ss_pred HHHHHHHHHHhhccCCCCCCCcEEEEEecCCCch--hhHHHHhccc--eEEEEcCCCHHHHHHHHHHHHhhhCCCCChhh
Q psy4538 81 SRRLKTEFLISLDGASTLDDDLVLVIGATNRPQE--LDEAARRRLV--KRLYIPLPDEQARCEIVTKLLRNITNSLTVDD 156 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~--l~~~l~~rf~--~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~ 156 (343)
...+-.+++.+.. .+..++++++..|.. + +.+++|+. ..+.+.+|+.+++.+++++.+...+..++++.
T Consensus 99 -~~~lf~l~N~~~e-----~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev 171 (214)
T PRK06620 99 -EPALLHIFNIINE-----KQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQI 171 (214)
T ss_pred -HHHHHHHHHHHHh-----cCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 1122233333322 334566666644443 5 78999886 57899999999999999999888778899999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHH
Q psy4538 157 IEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDAL 209 (343)
Q Consensus 157 ~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~ 209 (343)
++.++++..+ +.+.+.++++.....+.. ..++||...+++++
T Consensus 172 ~~~L~~~~~~-d~r~l~~~l~~l~~~~~~----------~~~~it~~~~~~~l 213 (214)
T PRK06620 172 IDFLLVNLPR-EYSKIIEILENINYFALI----------SKRKITISLVKEVL 213 (214)
T ss_pred HHHHHHHccC-CHHHHHHHHHHHHHHHHH----------cCCCCCHHHHHHHh
Confidence 9999999874 677777777664322221 12457777666654
No 118
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.61 E-value=8.8e-15 Score=142.87 Aligned_cols=189 Identities=23% Similarity=0.279 Sum_probs=127.4
Q ss_pred EEeCCCCchHHHHHHHHHHHc----------CCcEEEEeccccccccc----------------c-hHHHHHHHHHHHHH
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC----------KATFFCISASTLTSKWY----------------G-EGEKMVRALFAVAS 54 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l----------~~~~~~v~~~~l~~~~~----------------~-~~~~~l~~~~~~~~ 54 (343)
+|+|+||||||++++.+++++ ...+++++|..+...+. + .....+..+|....
T Consensus 785 YIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~ 864 (1164)
T PTZ00112 785 YISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNK 864 (1164)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhh
Confidence 589999999999999998876 25678999965432210 1 12234555555442
Q ss_pred --hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCC---CchhhHHHHhccce-EEE
Q psy4538 55 --VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNR---PQELDEAARRRLVK-RLY 128 (343)
Q Consensus 55 --~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~---~~~l~~~l~~rf~~-~i~ 128 (343)
.....||+|||+|.|.... ..++..|++ ... .....+++||++|. +..+++.+++|+.. .+.
T Consensus 865 k~~r~v~IIILDEID~L~kK~--------QDVLYnLFR---~~~-~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIv 932 (1164)
T PTZ00112 865 KDNRNVSILIIDEIDYLITKT--------QKVLFTLFD---WPT-KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLV 932 (1164)
T ss_pred cccccceEEEeehHhhhCccH--------HHHHHHHHH---Hhh-ccCCeEEEEEecCchhcchhhhhhhhhcccccccc
Confidence 1235699999999996431 122333333 222 23567899999976 55677888888874 488
Q ss_pred EcCCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHH---HHHHHhcccccccccccccccCCcccChhHH
Q psy4538 129 IPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMAS---LCREASLGPVRSIDLSRIDALDVRPISIDDF 205 (343)
Q Consensus 129 ~~~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~---l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~ 205 (343)
|++|+.+++.+|++..+......++++.++.+|+..... .+|++. +|+.|...+ ....|+.+|+
T Consensus 933 F~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~-SGDARKALDILRrAgEik------------egskVT~eHV 999 (1164)
T PTZ00112 933 FSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANV-SGDIRKALQICRKAFENK------------RGQKIVPRDI 999 (1164)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhc-CCHHHHHHHHHHHHHhhc------------CCCccCHHHH
Confidence 999999999999999988655567888899998855532 235554 455554321 1236889999
Q ss_pred HHHHHhcCCC
Q psy4538 206 RDALKTVRPS 215 (343)
Q Consensus 206 ~~a~~~~~ps 215 (343)
.+|...+..+
T Consensus 1000 rkAleeiE~s 1009 (1164)
T PTZ00112 1000 TEATNQLFDS 1009 (1164)
T ss_pred HHHHHHHHhh
Confidence 9988776443
No 119
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=4.9e-14 Score=133.30 Aligned_cols=160 Identities=16% Similarity=0.185 Sum_probs=122.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC------------------------cEEEEecccccccccchHHHHHHHHHHHHHh-
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA------------------------TFFCISASTLTSKWYGEGEKMVRALFAVASV- 55 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~------------------------~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~- 55 (343)
+||+||+|+|||++|+.+|+.+++ .++++++++- .+...++.+...+..
T Consensus 38 ~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~ 111 (491)
T PRK14964 38 ILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYL 111 (491)
T ss_pred EEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhc
Confidence 489999999999999999997643 3445544321 122345555554432
Q ss_pred ---cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 56 ---HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 56 ---~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
....|++|||+|.+. ....+.|+..++.. ...+.+|.+|+.+..+.+.+++|+. .+.|.++
T Consensus 112 P~~~~~KVvIIDEah~Ls-----------~~A~NaLLK~LEeP----p~~v~fIlatte~~Kl~~tI~SRc~-~~~f~~l 175 (491)
T PRK14964 112 PISSKFKVYIIDEVHMLS-----------NSAFNALLKTLEEP----APHVKFILATTEVKKIPVTIISRCQ-RFDLQKI 175 (491)
T ss_pred cccCCceEEEEeChHhCC-----------HHHHHHHHHHHhCC----CCCeEEEEEeCChHHHHHHHHHhhe-eeecccc
Confidence 346799999999873 23456778888764 4456777777888889999999996 7999999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhccc
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGP 183 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a 183 (343)
+.++..+.++..++..+..++++.+..+++.+.| +.+++.+++..+...+
T Consensus 176 ~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR~alslLdqli~y~ 225 (491)
T PRK14964 176 PTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMRNALFLLEQAAIYS 225 (491)
T ss_pred cHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc
Confidence 9999999999999998889999999999999975 8888888888776443
No 120
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.60 E-value=2.2e-14 Score=124.59 Aligned_cols=173 Identities=13% Similarity=0.155 Sum_probs=118.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQE 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~ 77 (343)
++|+||+|||||++++++++++ +.+++.+++..+... +. ....+.+|+|||+|.+..
T Consensus 45 ~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~--~~~~~~~liiDdi~~l~~------ 104 (227)
T PRK08903 45 FYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FD--FDPEAELYAVDDVERLDD------ 104 (227)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hh--hcccCCEEEEeChhhcCc------
Confidence 5799999999999999999876 667888887665321 11 123467999999997631
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCc--hhhHHHHhcc--ceEEEEcCCCHHHHHHHHHHHHhhhCCCCC
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ--ELDEAARRRL--VKRLYIPLPDEQARCEIVTKLLRNITNSLT 153 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~--~l~~~l~~rf--~~~i~~~~P~~~er~~il~~~l~~~~~~~~ 153 (343)
.... .+...++.... ....+++++++..+. .+.+.+.+|+ ...+.+++|+..++..+++..+.+.+..++
T Consensus 105 --~~~~---~L~~~~~~~~~-~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~ 178 (227)
T PRK08903 105 --AQQI---ALFNLFNRVRA-HGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLA 178 (227)
T ss_pred --hHHH---HHHHHHHHHHH-cCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 1112 23333322221 122234444433332 3457788887 468999999999999999998888888999
Q ss_pred hhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHH
Q psy4538 154 VDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALK 210 (343)
Q Consensus 154 ~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~ 210 (343)
++.+..|++... -+.+++.++++.....+... .++|+...+++.+.
T Consensus 179 ~~al~~L~~~~~-gn~~~l~~~l~~l~~~~~~~----------~~~i~~~~~~~~l~ 224 (227)
T PRK08903 179 DEVPDYLLTHFR-RDMPSLMALLDALDRYSLEQ----------KRPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHh----------CCCCCHHHHHHHHh
Confidence 999999999655 58889988888754333222 36788888777764
No 121
>KOG2004|consensus
Probab=99.60 E-value=7.8e-15 Score=139.24 Aligned_cols=175 Identities=22% Similarity=0.316 Sum_probs=123.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccc---------ccccchHHHHHHHHHHHHHhcCCcEEEecccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLT---------SKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLC 71 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~---------~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~ 71 (343)
++|+||||+|||++++++|..+|..|+.++...+. ..|+|....++-+.+......+| +++|||+|++..
T Consensus 441 lCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~ 519 (906)
T KOG2004|consen 441 LCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS 519 (906)
T ss_pred EEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC
Confidence 57999999999999999999999999999876553 34677777777777888887888 899999999973
Q ss_pred cCCCCchhHHHHHHHHHHHhhccCC---------C--CCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHH
Q psy4538 72 QRSDQENETSRRLKTEFLISLDGAS---------T--LDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEI 140 (343)
Q Consensus 72 ~~~~~~~~~~~~~~~~ll~~l~~~~---------~--~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~i 140 (343)
.-+.. +. ..|+..++--+ . .+-++|++|||+|..+.++++++.|+. .|+++-+..+|..+|
T Consensus 520 g~qGD--Pa-----sALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRME-vIelsGYv~eEKv~I 591 (906)
T KOG2004|consen 520 GHQGD--PA-----SALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRME-VIELSGYVAEEKVKI 591 (906)
T ss_pred CCCCC--hH-----HHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhh-eeeccCccHHHHHHH
Confidence 22221 11 12333333111 1 134679999999999999999999997 999999999999999
Q ss_pred HHHHHhh----------hCCCCChhhHHHHHHH-CC--CC--CHHHHHHHHHHHhcccc
Q psy4538 141 VTKLLRN----------ITNSLTVDDIEEVGRM-TT--DF--SGADMASLCREASLGPV 184 (343)
Q Consensus 141 l~~~l~~----------~~~~~~~~~~~~la~~-t~--g~--s~~dl~~l~~~a~~~a~ 184 (343)
.+.++-. ....+++..+..+.+. |. |. --..|..+|+.++..-.
T Consensus 592 A~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~Rk~Al~vv 650 (906)
T KOG2004|consen 592 AERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKICRKVALKVV 650 (906)
T ss_pred HHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9888732 1223455555554443 21 11 11346677777654433
No 122
>PRK05642 DNA replication initiation factor; Validated
Probab=99.60 E-value=2.1e-14 Score=124.87 Aligned_cols=177 Identities=14% Similarity=0.184 Sum_probs=119.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQE 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~ 77 (343)
++||||+|+|||+|++++++++ +..+++++..++... ...+.+... +..+|+|||++.+..+..
T Consensus 48 l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~--~~d~LiiDDi~~~~~~~~--- 114 (234)
T PRK05642 48 IYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLE--QYELVCLDDLDVIAGKAD--- 114 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhh--hCCEEEEechhhhcCChH---
Confidence 4799999999999999999765 567788887776542 112222222 346899999997743321
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchh---hHHHHhccc--eEEEEcCCCHHHHHHHHHHHHhhhCCCC
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQEL---DEAARRRLV--KRLYIPLPDEQARCEIVTKLLRNITNSL 152 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l---~~~l~~rf~--~~i~~~~P~~~er~~il~~~l~~~~~~~ 152 (343)
....+...++.... .++.++++++..|..+ .+.+++|+. ..+.+.+|+.+++.++++..+...+..+
T Consensus 115 ------~~~~Lf~l~n~~~~--~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l 186 (234)
T PRK05642 115 ------WEEALFHLFNRLRD--SGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHL 186 (234)
T ss_pred ------HHHHHHHHHHHHHh--cCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 11223333333222 3345667666555433 578999985 6788899999999999997777777788
Q ss_pred ChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHH
Q psy4538 153 TVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDAL 209 (343)
Q Consensus 153 ~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~ 209 (343)
+++.++.++++..+ +.+.+..+++.--..+... .++||..-+++++
T Consensus 187 ~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~----------~~~it~~~~~~~L 232 (234)
T PRK05642 187 TDEVGHFILTRGTR-SMSALFDLLERLDQASLQA----------QRKLTIPFLKETL 232 (234)
T ss_pred CHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHc----------CCcCCHHHHHHHh
Confidence 99999999999884 7777777776654333321 2567766666554
No 123
>CHL00176 ftsH cell division protein; Validated
Probab=99.60 E-value=7e-16 Score=150.82 Aligned_cols=80 Identities=36% Similarity=0.528 Sum_probs=69.6
Q ss_pred cCcceEeecchhhhhcccCCC---cchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEecc
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQ---ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIP 297 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~---~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~ 297 (343)
.+||||||||+|+++.+|+.+ .+......+++||.+|||+... ..|+||+|||+|+.||||++| |||+.|+|+
T Consensus 274 ~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~--~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~ 351 (638)
T CHL00176 274 NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN--KGVIVIAATNRVDILDAALLRPGRFDRQITVS 351 (638)
T ss_pred CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC--CCeeEEEecCchHhhhhhhhccccCceEEEEC
Confidence 379999999999999988643 2344568899999999999864 449999999999999999999 999999999
Q ss_pred CCCCCCC
Q psy4538 298 LPDEQKV 304 (343)
Q Consensus 298 ~P~~~~r 304 (343)
+|+.++|
T Consensus 352 lPd~~~R 358 (638)
T CHL00176 352 LPDREGR 358 (638)
T ss_pred CCCHHHH
Confidence 9998765
No 124
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.59 E-value=2e-14 Score=142.43 Aligned_cols=257 Identities=17% Similarity=0.188 Sum_probs=162.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHH-----HhcCCcEEEecccccccccCCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVA-----SVHQPSIIFIDEIDSLLCQRSD 75 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~-----~~~~p~vl~iDeid~l~~~~~~ 75 (343)
++||||||||||++|+++++..+.+++.+++..... ..++..+..+ ......+|||||+|.+..
T Consensus 55 lLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i-------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~---- 123 (725)
T PRK13341 55 LILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGV-------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNK---- 123 (725)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhh-------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH----
Confidence 589999999999999999999999998888753211 1122222222 123467999999998731
Q ss_pred CchhHHHHHHHHHHHhhccCCCCCCCcEEEEEec--CCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHh-------
Q psy4538 76 QENETSRRLKTEFLISLDGASTLDDDLVLVIGAT--NRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLR------- 146 (343)
Q Consensus 76 ~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~t--n~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~------- 146 (343)
.....++..++ ...+++|++| |....+++++++|+. .+.+++++.+++..+++..+.
T Consensus 124 -------~qQdaLL~~lE------~g~IiLI~aTTenp~~~l~~aL~SR~~-v~~l~pLs~edi~~IL~~~l~~~~~~~g 189 (725)
T PRK13341 124 -------AQQDALLPWVE------NGTITLIGATTENPYFEVNKALVSRSR-LFRLKSLSDEDLHQLLKRALQDKERGYG 189 (725)
T ss_pred -------HHHHHHHHHhc------CceEEEEEecCCChHhhhhhHhhcccc-ceecCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 12233444443 2346666655 334578899999975 789999999999999999887
Q ss_pred hhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCC--CccccccccC
Q psy4538 147 NITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRP--SVCQADFVHQ 224 (343)
Q Consensus 147 ~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~p--s~~~k~~~~~ 224 (343)
.....++++.+..|++.+.| ..+.+.++++.+...+... ......++.+.+.+.+..... ...+.
T Consensus 190 ~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~~~~~~~-------~~~~i~It~~~~~e~l~~~~~~ydk~gd----- 256 (725)
T PRK13341 190 DRKVDLEPEAEKHLVDVANG-DARSLLNALELAVESTPPD-------EDGLIDITLAIAEESIQQRAVLYDKEGD----- 256 (725)
T ss_pred CcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccC-------CCCceeccHHHHHHHHHHhhhhcccCCC-----
Confidence 33456788899999998854 6777777777765322111 001123777777777765221 11111
Q ss_pred cceEeecchhhhhcc-cCCCcchhHHHHHHHHHHhhcC-CCCCCCCcEEEEeecCCcccccHHHHH----hhhceEeccC
Q psy4538 225 PSIIFIDEIDSLLCQ-RSDQENETSRRLKTEFLISLDG-ASTLDDDLVLVIGATNRPQELDEAARR----RLVKRLYIPL 298 (343)
Q Consensus 225 p~ilf~DEiDsl~~~-R~~~~~~~~~r~v~~lL~~mdg-~~~~~~~~v~vi~aTN~~~~lD~allR----R~d~~i~~~~ 298 (343)
...|.|.++... ||++-+. .+..|-..+++ .....=-+-+++.|+....+-||..+. -++-.-.+++
T Consensus 257 ---~hyd~Isa~~ksirgsD~da----Al~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~ 329 (725)
T PRK13341 257 ---AHFDTISAFIKSLRGSDPDA----ALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGL 329 (725)
T ss_pred ---CCHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCC
Confidence 356777777754 5433222 23333333332 111000001567777788888888777 7777888899
Q ss_pred CCCC
Q psy4538 299 PDEQ 302 (343)
Q Consensus 299 P~~~ 302 (343)
|+-.
T Consensus 330 pE~~ 333 (725)
T PRK13341 330 PEGL 333 (725)
T ss_pred cchh
Confidence 9764
No 125
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=1.1e-13 Score=132.46 Aligned_cols=157 Identities=20% Similarity=0.243 Sum_probs=115.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc-----------------------EEEEecccccccccchHHHHHHHHHHHHH---
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT-----------------------FFCISASTLTSKWYGEGEKMVRALFAVAS--- 54 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~-----------------------~~~v~~~~l~~~~~~~~~~~l~~~~~~~~--- 54 (343)
+||+||||||||++|+++|+.+.+. ++++++... .....++.+...+.
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~------~~vd~iR~l~~~~~~~p 112 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASN------NSVEDVRDLREKVLLAP 112 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhcc
Confidence 4899999999999999999988541 344443211 11223344333222
Q ss_pred -hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCC
Q psy4538 55 -VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPD 133 (343)
Q Consensus 55 -~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~ 133 (343)
...+.|++|||+|.+. ....+.++..++.. ...+++|.+++.+..+.+.+.+|+. .++|.+|+
T Consensus 113 ~~~~~kVVIIDEad~ls-----------~~a~naLLk~LEep----~~~t~~Il~t~~~~kl~~~I~SRc~-~~~f~~ls 176 (504)
T PRK14963 113 LRGGRKVYILDEAHMMS-----------KSAFNALLKTLEEP----PEHVIFILATTEPEKMPPTILSRTQ-HFRFRRLT 176 (504)
T ss_pred ccCCCeEEEEECccccC-----------HHHHHHHHHHHHhC----CCCEEEEEEcCChhhCChHHhcceE-EEEecCCC
Confidence 2356799999999762 23456677777653 3456677778888899999999987 89999999
Q ss_pred HHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHh
Q psy4538 134 EQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREAS 180 (343)
Q Consensus 134 ~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~ 180 (343)
.++..+.++..++..+..++++.+..+++.+.| ..+.+.+.++.+.
T Consensus 177 ~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dlR~aln~Lekl~ 222 (504)
T PRK14963 177 EEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AMRDAESLLERLL 222 (504)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 999999999999988888899999999998885 6667777776653
No 126
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=7e-14 Score=135.73 Aligned_cols=159 Identities=20% Similarity=0.244 Sum_probs=117.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc-----------------------------EEEEecccccccccchHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT-----------------------------FFCISASTLTSKWYGEGEKMVRALFA 51 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~-----------------------------~~~v~~~~l~~~~~~~~~~~l~~~~~ 51 (343)
+||+||+|+|||++|+.+|+.+++. +++++... ..+...++.+..
T Consensus 41 ~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~ 114 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLE 114 (618)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHH
Confidence 4899999999999999999998752 22222211 012233455554
Q ss_pred HHHh----cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEE
Q psy4538 52 VASV----HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRL 127 (343)
Q Consensus 52 ~~~~----~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i 127 (343)
.+.. ....|++|||+|.|. ....+.++..++.. ...+.+|.+|+.+..+.+.+++|+. .+
T Consensus 115 ~~~~~p~~g~~KV~IIDEvh~Ls-----------~~a~NaLLKtLEEP----P~~~~fIL~Ttd~~kil~TIlSRc~-~~ 178 (618)
T PRK14951 115 QAVYKPVQGRFKVFMIDEVHMLT-----------NTAFNAMLKTLEEP----PEYLKFVLATTDPQKVPVTVLSRCL-QF 178 (618)
T ss_pred HHHhCcccCCceEEEEEChhhCC-----------HHHHHHHHHhcccC----CCCeEEEEEECCchhhhHHHHHhce-ee
Confidence 4331 235699999999873 23355677777663 4456667777778888888999995 89
Q ss_pred EEcCCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcc
Q psy4538 128 YIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLG 182 (343)
Q Consensus 128 ~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~ 182 (343)
+|..++.++..+.++..+++.+..++++.+..+++.+.| +.+++.+++.++...
T Consensus 179 ~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G-slR~al~lLdq~ia~ 232 (618)
T PRK14951 179 NLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG-SMRDALSLTDQAIAF 232 (618)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 999999999999999999988888899899999998885 788888887766543
No 127
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=1.2e-13 Score=132.52 Aligned_cols=158 Identities=19% Similarity=0.202 Sum_probs=114.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC------------------------cEEEEecccccccccchHHHHHHHHHHHHH--
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA------------------------TFFCISASTLTSKWYGEGEKMVRALFAVAS-- 54 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~------------------------~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~-- 54 (343)
+||+||+|+|||++|+.+|+.+++ .+++++...- .+...++.+...+.
T Consensus 41 ~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~~ 114 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASR------TGVEETKEILDNIQYM 114 (546)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHhh
Confidence 479999999999999999998864 2222322111 11122333433332
Q ss_pred --hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 55 --VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 55 --~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
.....|++|||+|.+- ....+.|+..++.. ...+.+|.+|+.+..+.+.+++|+. .++|.++
T Consensus 115 p~~g~~kViIIDEa~~ls-----------~~a~naLLK~LEep----p~~v~fIL~Ttd~~kil~tI~SRc~-~~~f~~L 178 (546)
T PRK14957 115 PSQGRYKVYLIDEVHMLS-----------KQSFNALLKTLEEP----PEYVKFILATTDYHKIPVTILSRCI-QLHLKHI 178 (546)
T ss_pred hhcCCcEEEEEechhhcc-----------HHHHHHHHHHHhcC----CCCceEEEEECChhhhhhhHHHhee-eEEeCCC
Confidence 2346799999999873 23556788888764 3455666666678888888999995 9999999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhc
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASL 181 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~ 181 (343)
+.++..+.++..++..+...++..+..+++.+. .+.+++.+++..+..
T Consensus 179 s~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~-GdlR~alnlLek~i~ 226 (546)
T PRK14957 179 SQADIKDQLKIILAKENINSDEQSLEYIAYHAK-GSLRDALSLLDQAIS 226 (546)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 999999999999988888889989999999886 477777777776653
No 128
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=7e-14 Score=135.61 Aligned_cols=159 Identities=22% Similarity=0.249 Sum_probs=119.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcE------------------------EEEecccccccccchHHHHHHHHHHHHH--
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATF------------------------FCISASTLTSKWYGEGEKMVRALFAVAS-- 54 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~------------------------~~v~~~~l~~~~~~~~~~~l~~~~~~~~-- 54 (343)
+||+||+|+|||++|+.+|+.+++.- ++++... ..+...++.++..+.
T Consensus 41 ~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~ 114 (709)
T PRK08691 41 YLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYA 114 (709)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhh
Confidence 58999999999999999999986531 2222111 112234555555432
Q ss_pred --hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 55 --VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 55 --~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
.....|+||||+|.+. ....+.|+..++.. ...+.+|.+|+.+..+.+.+++||. .+.|+.+
T Consensus 115 P~~gk~KVIIIDEad~Ls-----------~~A~NALLKtLEEP----p~~v~fILaTtd~~kL~~TIrSRC~-~f~f~~L 178 (709)
T PRK08691 115 PTAGKYKVYIIDEVHMLS-----------KSAFNAMLKTLEEP----PEHVKFILATTDPHKVPVTVLSRCL-QFVLRNM 178 (709)
T ss_pred hhhCCcEEEEEECccccC-----------HHHHHHHHHHHHhC----CCCcEEEEEeCCccccchHHHHHHh-hhhcCCC
Confidence 2345799999999772 23455677777764 3456677778888899999999995 7889999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcc
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLG 182 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~ 182 (343)
+.++..+.++..++..+..++++.+..|++.+. .+.+++.+++..+...
T Consensus 179 s~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~-GslRdAlnLLDqaia~ 227 (709)
T PRK08691 179 TAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA-GSMRDALSLLDQAIAL 227 (709)
T ss_pred CHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC-CCHHHHHHHHHHHHHh
Confidence 999999999999999888899999999999887 4788888888776543
No 129
>KOG2028|consensus
Probab=99.58 E-value=8.1e-14 Score=123.13 Aligned_cols=181 Identities=27% Similarity=0.380 Sum_probs=121.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc---EEEEecccccccccchHHHHHHHHHHHHHh-----cCCcEEEeccccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT---FFCISASTLTSKWYGEGEKMVRALFAVASV-----HQPSIIFIDEIDSLLCQ 72 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~---~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~-----~~p~vl~iDeid~l~~~ 72 (343)
++||||||||||+||+.++.....+ |+++++..- ..+.++.+|+.++. ....||||||++.+-..
T Consensus 165 mIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks 237 (554)
T KOG2028|consen 165 MILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS 237 (554)
T ss_pred eEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh
Confidence 5899999999999999999988655 777666442 33456777776642 35689999999987432
Q ss_pred CCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEec--CCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhh---
Q psy4538 73 RSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGAT--NRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRN--- 147 (343)
Q Consensus 73 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~t--n~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~--- 147 (343)
.++ .|+-.+ .++.|++||+| |+.-.+..++++||. ++.+..........|+.+...-
T Consensus 238 QQD-----------~fLP~V------E~G~I~lIGATTENPSFqln~aLlSRC~-VfvLekL~~n~v~~iL~raia~l~d 299 (554)
T KOG2028|consen 238 QQD-----------TFLPHV------ENGDITLIGATTENPSFQLNAALLSRCR-VFVLEKLPVNAVVTILMRAIASLGD 299 (554)
T ss_pred hhh-----------ccccee------ccCceEEEecccCCCccchhHHHHhccc-eeEeccCCHHHHHHHHHHHHHhhcc
Confidence 222 233222 35668888876 667799999999997 6677777888888888764431
Q ss_pred -------hCC---CCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhc
Q psy4538 148 -------ITN---SLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTV 212 (343)
Q Consensus 148 -------~~~---~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 212 (343)
... .+++..++.++..+.|-....+..+--.+.+.+.+. .......++.+|++++++.-
T Consensus 300 ser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~------g~~~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 300 SERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRS------GQSSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred ccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhc------CCcccceecHHHHHHHHhhc
Confidence 111 234556888999888766655554432222222222 11134578999999998764
No 130
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.58 E-value=1e-13 Score=127.69 Aligned_cols=181 Identities=17% Similarity=0.228 Sum_probs=118.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC-----CcEEEEeccccccccc-------------ch-------HHHHHHHHHHHHHh
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK-----ATFFCISASTLTSKWY-------------GE-------GEKMVRALFAVASV 55 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~-----~~~~~v~~~~l~~~~~-------------~~-------~~~~l~~~~~~~~~ 55 (343)
++|+||||||||++|+++++++. .+++.+++.++..... +. ....++.+......
T Consensus 39 lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (337)
T PRK12402 39 LLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYAS 118 (337)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHh
Confidence 58999999999999999999884 3467788776532210 00 01122222222211
Q ss_pred -----cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEc
Q psy4538 56 -----HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIP 130 (343)
Q Consensus 56 -----~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~ 130 (343)
..+.+|+|||+|.+.. .....+...++... . ...+|.+++.+..+.+.+++|+. .+.+.
T Consensus 119 ~~~~~~~~~vlilDe~~~l~~-----------~~~~~L~~~le~~~---~-~~~~Il~~~~~~~~~~~L~sr~~-~v~~~ 182 (337)
T PRK12402 119 YRPLSADYKTILLDNAEALRE-----------DAQQALRRIMEQYS---R-TCRFIIATRQPSKLIPPIRSRCL-PLFFR 182 (337)
T ss_pred cCCCCCCCcEEEEeCcccCCH-----------HHHHHHHHHHHhcc---C-CCeEEEEeCChhhCchhhcCCce-EEEec
Confidence 2356999999997731 12233444444432 2 23344455556677788888975 78999
Q ss_pred CCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHH
Q psy4538 131 LPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALK 210 (343)
Q Consensus 131 ~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~ 210 (343)
+|+.++..++++..+++.+..++++.++.+++.+.| +.+.+.+.+..++ .. ...|+.+++.+.+.
T Consensus 183 ~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g-dlr~l~~~l~~~~---~~-----------~~~It~~~v~~~~~ 247 (337)
T PRK12402 183 APTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG-DLRKAILTLQTAA---LA-----------AGEITMEAAYEALG 247 (337)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH---Hc-----------CCCCCHHHHHHHhC
Confidence 999999999999999988888999999999998853 5555555444332 11 13588888887665
Q ss_pred hc
Q psy4538 211 TV 212 (343)
Q Consensus 211 ~~ 212 (343)
..
T Consensus 248 ~~ 249 (337)
T PRK12402 248 DV 249 (337)
T ss_pred CC
Confidence 43
No 131
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=3e-13 Score=130.90 Aligned_cols=159 Identities=19% Similarity=0.159 Sum_probs=116.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc--------------------------EEEEecccccccccchHHHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT--------------------------FFCISASTLTSKWYGEGEKMVRALFAVAS 54 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~--------------------------~~~v~~~~l~~~~~~~~~~~l~~~~~~~~ 54 (343)
+||+||+|||||++|+.+|+.+++. ++++++... .+-..++.+...+.
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~ 111 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAF 111 (584)
T ss_pred EEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHH
Confidence 3799999999999999999988752 222222111 11223343333322
Q ss_pred ----hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEc
Q psy4538 55 ----VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIP 130 (343)
Q Consensus 55 ----~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~ 130 (343)
.....|++|||+|.+- ....+.|+..++.. ...+++|.+|+.+..+.+.+++|+. .++|.
T Consensus 112 ~~P~~~~~KVvIIDEah~Lt-----------~~A~NALLK~LEEp----p~~~~fIL~tte~~kll~TI~SRc~-~~~F~ 175 (584)
T PRK14952 112 YAPAQSRYRIFIVDEAHMVT-----------TAGFNALLKIVEEP----PEHLIFIFATTEPEKVLPTIRSRTH-HYPFR 175 (584)
T ss_pred hhhhcCCceEEEEECCCcCC-----------HHHHHHHHHHHhcC----CCCeEEEEEeCChHhhHHHHHHhce-EEEee
Confidence 2346799999999883 23566788888764 4467777777888899999999975 89999
Q ss_pred CCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcc
Q psy4538 131 LPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLG 182 (343)
Q Consensus 131 ~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~ 182 (343)
.++.++..+.+...++..+..++++.+..+++.+. .+.+++.+++......
T Consensus 176 ~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~-GdlR~aln~Ldql~~~ 226 (584)
T PRK14952 176 LLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGG-GSPRDTLSVLDQLLAG 226 (584)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHHhc
Confidence 99999999999999998888888888888888776 4778888888776543
No 132
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=9.8e-14 Score=133.83 Aligned_cols=159 Identities=19% Similarity=0.236 Sum_probs=117.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc------------------------EEEEecccccccccchHHHHHHHHHHHHHh-
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT------------------------FFCISASTLTSKWYGEGEKMVRALFAVASV- 55 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~------------------------~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~- 55 (343)
+||+||+|+|||++|+.+|+.+++. ++.+++.. ......++.+...+..
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~ 114 (527)
T PRK14969 41 YLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYA 114 (527)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhC
Confidence 3799999999999999999998753 22222211 1122345555554432
Q ss_pred ---cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 56 ---HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 56 ---~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
....|++|||+|.+. ....+.++..++.. ...+.+|.+|+.+..+.+.+++|+. .++|..+
T Consensus 115 p~~~~~kVvIIDEad~ls-----------~~a~naLLK~LEep----p~~~~fIL~t~d~~kil~tI~SRc~-~~~f~~l 178 (527)
T PRK14969 115 PTRGRFKVYIIDEVHMLS-----------KSAFNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLSRCL-QFNLKQM 178 (527)
T ss_pred cccCCceEEEEcCcccCC-----------HHHHHHHHHHHhCC----CCCEEEEEEeCChhhCchhHHHHHH-HHhcCCC
Confidence 235699999999873 23456688887764 4456677777778888888999985 8999999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcc
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLG 182 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~ 182 (343)
+.++..+.+...++..+...++..+..+++.+.| +.+++.+++..+...
T Consensus 179 ~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr~al~lldqai~~ 227 (527)
T PRK14969 179 PPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMRDALSLLDQAIAY 227 (527)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 9999999999999887778888889999998774 778888888776543
No 133
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=2.2e-13 Score=131.50 Aligned_cols=156 Identities=21% Similarity=0.195 Sum_probs=112.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc------------------------EEEEecccccccccchHHHHHHHHHHHH---
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT------------------------FFCISASTLTSKWYGEGEKMVRALFAVA--- 53 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~------------------------~~~v~~~~l~~~~~~~~~~~l~~~~~~~--- 53 (343)
+||+||+|+|||++|+.+|+.+++. +++++...- ..-..++.+....
T Consensus 41 ~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~ 114 (624)
T PRK14959 41 YLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYA 114 (624)
T ss_pred EEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhh
Confidence 4799999999999999999999753 333332211 0112223322222
Q ss_pred -HhcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 54 -SVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 54 -~~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
......|++|||+|.+- ....+.|+..++.. ...+++|.+|+.+..+.+.+++|+. .+.|+.+
T Consensus 115 p~~g~~kVIIIDEad~Lt-----------~~a~naLLk~LEEP----~~~~ifILaTt~~~kll~TI~SRcq-~i~F~pL 178 (624)
T PRK14959 115 PMEGRYKVFIIDEAHMLT-----------REAFNALLKTLEEP----PARVTFVLATTEPHKFPVTIVSRCQ-HFTFTRL 178 (624)
T ss_pred hhcCCceEEEEEChHhCC-----------HHHHHHHHHHhhcc----CCCEEEEEecCChhhhhHHHHhhhh-ccccCCC
Confidence 12345799999999883 23356677777653 3457777888888888889999986 7899999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHH
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREA 179 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a 179 (343)
+.++..++++..+...+..++++.+..+++.+.| +.+++.+++.++
T Consensus 179 s~~eL~~~L~~il~~egi~id~eal~lIA~~s~G-dlR~Al~lLeql 224 (624)
T PRK14959 179 SEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG-SVRDSMSLLGQV 224 (624)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 9999999999998888778899999999998875 555666666554
No 134
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=2.4e-13 Score=132.07 Aligned_cols=158 Identities=21% Similarity=0.229 Sum_probs=118.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc------------------------EEEEecccccccccchHHHHHHHHHHHHH--
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT------------------------FFCISASTLTSKWYGEGEKMVRALFAVAS-- 54 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~------------------------~~~v~~~~l~~~~~~~~~~~l~~~~~~~~-- 54 (343)
+||+||+|||||++|+.+|+.+++. ++.+++.. ..+...++.+...+.
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~ 114 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYA 114 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhC
Confidence 4789999999999999999988642 33333321 122334555555443
Q ss_pred --hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 55 --VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 55 --~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
.....|++|||+|.|. ....+.|+..++.. ...+++|.+|+.+..+.+.+++|+. .+.|++|
T Consensus 115 p~~~~~kViIIDE~~~Lt-----------~~a~naLLKtLEep----p~~~ifIlatt~~~ki~~tI~SRc~-~~~f~~~ 178 (559)
T PRK05563 115 PSEAKYKVYIIDEVHMLS-----------TGAFNALLKTLEEP----PAHVIFILATTEPHKIPATILSRCQ-RFDFKRI 178 (559)
T ss_pred cccCCeEEEEEECcccCC-----------HHHHHHHHHHhcCC----CCCeEEEEEeCChhhCcHHHHhHhe-EEecCCC
Confidence 2345799999999873 23456777777654 4456666667778999999999996 7899999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhc
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASL 181 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~ 181 (343)
+.++..+.++..++..+..++++.+..+++.+.| +.+++.+++..+..
T Consensus 179 ~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R~al~~Ldq~~~ 226 (559)
T PRK05563 179 SVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMRDALSILDQAIS 226 (559)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 9999999999999888888898899999998876 78888888876644
No 135
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.55 E-value=2.5e-13 Score=123.95 Aligned_cols=147 Identities=16% Similarity=0.204 Sum_probs=101.0
Q ss_pred EEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHH-hcCCcEEEecccccccccCCCCchhH
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVAS-VHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~-~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
||+||||+|||+++++++++++.+++.+++.+ .. .......+........ ...+.+|+|||+|.+...
T Consensus 47 ll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~-------- 115 (316)
T PHA02544 47 LHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA-------- 115 (316)
T ss_pred EeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH--------
Confidence 56999999999999999999999999999877 21 1111122222211111 135789999999977211
Q ss_pred HHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHh-------hhCCCCC
Q psy4538 81 SRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLR-------NITNSLT 153 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~-------~~~~~~~ 153 (343)
.....+...++.. ...+.+|.++|.+..+.+.+++||. .+.++.|+.+++.++++.++. ..+..++
T Consensus 116 --~~~~~L~~~le~~----~~~~~~Ilt~n~~~~l~~~l~sR~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~ 188 (316)
T PHA02544 116 --DAQRHLRSFMEAY----SKNCSFIITANNKNGIIEPLRSRCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVD 188 (316)
T ss_pred --HHHHHHHHHHHhc----CCCceEEEEcCChhhchHHHHhhce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 1122333334433 3345677788999999999999996 789999999999877665433 3455677
Q ss_pred hhhHHHHHHHCCC
Q psy4538 154 VDDIEEVGRMTTD 166 (343)
Q Consensus 154 ~~~~~~la~~t~g 166 (343)
++.+..+++...|
T Consensus 189 ~~al~~l~~~~~~ 201 (316)
T PHA02544 189 MKVLAALVKKNFP 201 (316)
T ss_pred HHHHHHHHHhcCC
Confidence 7788888887664
No 136
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.55 E-value=5.8e-15 Score=137.12 Aligned_cols=80 Identities=43% Similarity=0.633 Sum_probs=68.7
Q ss_pred cCcceEeecchhhhhcccCCCc---chhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEecc
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQE---NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIP 297 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~---~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~ 297 (343)
..||||||||+|+++.+|++.. +....+.+.++|.+||++...++ |.||+|||+++.||++++| |||+.|+|+
T Consensus 214 ~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~--v~vI~ttn~~~~ld~al~r~grfd~~i~v~ 291 (364)
T TIGR01242 214 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGN--VKVIAATNRPDILDPALLRPGRFDRIIEVP 291 (364)
T ss_pred cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCC--EEEEEecCChhhCChhhcCcccCceEEEeC
Confidence 3699999999999999886543 33456889999999999876444 9999999999999999999 999999999
Q ss_pred CCCCCCC
Q psy4538 298 LPDEQKV 304 (343)
Q Consensus 298 ~P~~~~r 304 (343)
+|+.++|
T Consensus 292 ~P~~~~r 298 (364)
T TIGR01242 292 LPDFEGR 298 (364)
T ss_pred CcCHHHH
Confidence 9998765
No 137
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.54 E-value=3.6e-13 Score=124.96 Aligned_cols=174 Identities=22% Similarity=0.261 Sum_probs=123.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc------------------------EEEEecccccccccchHHHHHHHHHHHHHh-
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT------------------------FFCISASTLTSKWYGEGEKMVRALFAVASV- 55 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~------------------------~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~- 55 (343)
+||+||||+|||++++.+++.+.+. ++.++... ......++.++..+..
T Consensus 39 ~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~ 112 (355)
T TIGR02397 39 YLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYA 112 (355)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcC
Confidence 4799999999999999999987532 22232221 1122334555554432
Q ss_pred ---cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 56 ---HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 56 ---~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
....|++|||+|.+. ....+.++..++.. ...+++|.+++.+..+.+.+++|+. .+++++|
T Consensus 113 p~~~~~~vviidea~~l~-----------~~~~~~Ll~~le~~----~~~~~lIl~~~~~~~l~~~l~sr~~-~~~~~~~ 176 (355)
T TIGR02397 113 PSSGKYKVYIIDEVHMLS-----------KSAFNALLKTLEEP----PEHVVFILATTEPHKIPATILSRCQ-RFDFKRI 176 (355)
T ss_pred cccCCceEEEEeChhhcC-----------HHHHHHHHHHHhCC----ccceeEEEEeCCHHHHHHHHHhhee-EEEcCCC
Confidence 234699999999773 12345566666553 3456667777888888899999985 7899999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHH
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALK 210 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~ 210 (343)
+.++..++++..++..+..++++.+..+++.+.| +++.+.+.+..+...+- ..|+.+++.+.+.
T Consensus 177 ~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~~a~~~lekl~~~~~-------------~~it~~~v~~~~~ 240 (355)
T TIGR02397 177 PLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLRDALSLLDQLISFGN-------------GNITYEDVNELLG 240 (355)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChHHHHHHHHHHHhhcC-------------CCCCHHHHHHHhC
Confidence 9999999999999988888898899999998875 67777777766654321 2378888877654
No 138
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=3.7e-13 Score=135.03 Aligned_cols=157 Identities=20% Similarity=0.152 Sum_probs=115.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc--------------------------EEEEecccccccccchHHHHHHHHHHHH-
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT--------------------------FFCISASTLTSKWYGEGEKMVRALFAVA- 53 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~--------------------------~~~v~~~~l~~~~~~~~~~~l~~~~~~~- 53 (343)
+||+||+|||||++|+.+|+.+++. +++++.... .....++.+...+
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~ 113 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAF 113 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHH
Confidence 4899999999999999999999752 122222110 0122233332222
Q ss_pred ---HhcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEc
Q psy4538 54 ---SVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIP 130 (343)
Q Consensus 54 ---~~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~ 130 (343)
......|+||||+|.|- ....+.|++.++.. ...+++|.+|+.++.+.+.+++|+. .+.|.
T Consensus 114 ~~p~~~~~KV~IIDEad~lt-----------~~a~NaLLK~LEEp----P~~~~fIl~tt~~~kLl~TIrSRc~-~v~F~ 177 (824)
T PRK07764 114 FAPAESRYKIFIIDEAHMVT-----------PQGFNALLKIVEEP----PEHLKFIFATTEPDKVIGTIRSRTH-HYPFR 177 (824)
T ss_pred hchhcCCceEEEEechhhcC-----------HHHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHhhee-EEEee
Confidence 22456799999999883 24456788888775 3456777777888889899999996 88999
Q ss_pred CCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHh
Q psy4538 131 LPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREAS 180 (343)
Q Consensus 131 ~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~ 180 (343)
.++.++..++++..+++.+..++++.+..+++.+.| +.+++.+++++.+
T Consensus 178 ~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR~Al~eLEKLi 226 (824)
T PRK07764 178 LVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVRDSLSVLDQLL 226 (824)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 999999999999999888888888888889888875 7778777777654
No 139
>PRK09087 hypothetical protein; Validated
Probab=99.54 E-value=2.3e-13 Score=117.52 Aligned_cols=171 Identities=15% Similarity=0.168 Sum_probs=114.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
++|+||+|+|||+|++++|+..+..++ +...+... ++.... ..+|+|||++.+.. .
T Consensus 47 l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~~~-----------~~~~~~---~~~l~iDDi~~~~~---~----- 102 (226)
T PRK09087 47 VVLAGPVGSGKTHLASIWREKSDALLI--HPNEIGSD-----------AANAAA---EGPVLIEDIDAGGF---D----- 102 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcchH-----------HHHhhh---cCeEEEECCCCCCC---C-----
Confidence 479999999999999999998766543 33222111 111111 24899999997621 1
Q ss_pred HHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchh---hHHHHhccc--eEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 81 SRRLKTEFLISLDGASTLDDDLVLVIGATNRPQEL---DEAARRRLV--KRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l---~~~l~~rf~--~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
.. .+...++.... .++.++++++..|..+ .+.+++|+. ..+++.+|+.+++.+++++.++..+..++++
T Consensus 103 -~~---~lf~l~n~~~~--~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~e 176 (226)
T PRK09087 103 -ET---GLFHLINSVRQ--AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPH 176 (226)
T ss_pred -HH---HHHHHHHHHHh--CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 11 13332222222 2345666666554433 577899885 7899999999999999999999888899999
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhc
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTV 212 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 212 (343)
.++.|+++..+ +.+.+..+++.....+... .+++|..-++++++.+
T Consensus 177 v~~~La~~~~r-~~~~l~~~l~~L~~~~~~~----------~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 177 VVYYLVSRMER-SLFAAQTIVDRLDRLALER----------KSRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHhhh-hHHHHHHHHHHHHHHHHHh----------CCCCCHHHHHHHHHhh
Confidence 99999999883 5566665555543333221 3568888888888754
No 140
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=4.3e-13 Score=128.90 Aligned_cols=157 Identities=20% Similarity=0.231 Sum_probs=115.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC------------------------cEEEEecccccccccchHHHHHHHHHHHHHh-
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA------------------------TFFCISASTLTSKWYGEGEKMVRALFAVASV- 55 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~------------------------~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~- 55 (343)
+||+||+|+|||++|+.+|+.+.+ .++++++... .+...++.+...+..
T Consensus 41 ~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~ 114 (605)
T PRK05896 41 YIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYL 114 (605)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhc
Confidence 479999999999999999998854 1222322110 112234554443332
Q ss_pred ---cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 56 ---HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 56 ---~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
....|++|||+|.+- ....+.|+..++.. ...+++|.+|+.+..+.+.+++|+. .++|++|
T Consensus 115 P~~~~~KVIIIDEad~Lt-----------~~A~NaLLKtLEEP----p~~tvfIL~Tt~~~KLl~TI~SRcq-~ieF~~L 178 (605)
T PRK05896 115 PTTFKYKVYIIDEAHMLS-----------TSAWNALLKTLEEP----PKHVVFIFATTEFQKIPLTIISRCQ-RYNFKKL 178 (605)
T ss_pred hhhCCcEEEEEechHhCC-----------HHHHHHHHHHHHhC----CCcEEEEEECCChHhhhHHHHhhhh-hcccCCC
Confidence 235699999999873 12345677777764 3456777777888999999999997 8999999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHh
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREAS 180 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~ 180 (343)
+.++....++..+...+..++++.+..+++.+.| +++++.+++....
T Consensus 179 s~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR~AlnlLekL~ 225 (605)
T PRK05896 179 NNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLRDGLSILDQLS 225 (605)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHH
Confidence 9999999999999888778888899999998875 6777777777644
No 141
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=6.2e-13 Score=126.85 Aligned_cols=159 Identities=21% Similarity=0.255 Sum_probs=113.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc------------------------EEEEecccccccccchHHHHHHHHHHHHH--
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT------------------------FFCISASTLTSKWYGEGEKMVRALFAVAS-- 54 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~------------------------~~~v~~~~l~~~~~~~~~~~l~~~~~~~~-- 54 (343)
+|||||+|+|||++|+.+|+.+++. ++.++.+. ..+...++.+...+.
T Consensus 41 yLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~ 114 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYT 114 (486)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhC
Confidence 3789999999999999999998641 11111110 011223344443332
Q ss_pred --hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 55 --VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 55 --~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
...+.|++|||+|.+. ....+.++..++.. ...+++|.+|+.++.+.+.+++|+. .+.|++|
T Consensus 115 P~~~~~KVvIIDEad~Lt-----------~~a~naLLk~LEep----p~~~v~Il~tt~~~kl~~tI~SRc~-~i~f~~l 178 (486)
T PRK14953 115 PIKGKYKVYIIDEAHMLT-----------KEAFNALLKTLEEP----PPRTIFILCTTEYDKIPPTILSRCQ-RFIFSKP 178 (486)
T ss_pred cccCCeeEEEEEChhhcC-----------HHHHHHHHHHHhcC----CCCeEEEEEECCHHHHHHHHHHhce-EEEcCCC
Confidence 2345799999999773 22345677777654 3344555556677888889999986 7999999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcc
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLG 182 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~ 182 (343)
+.++...++...++..+...+++.+..++..+.| +.+++.++++.+...
T Consensus 179 s~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~al~~Ldkl~~~ 227 (486)
T PRK14953 179 TKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDAASLLDQASTY 227 (486)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 9999999999999988888888899999998875 677888888776543
No 142
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=8.6e-13 Score=129.24 Aligned_cols=163 Identities=20% Similarity=0.240 Sum_probs=117.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEE---ecc----------ccc--ccccchHHHHHHHHHHHHHh----cCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI---SAS----------TLT--SKWYGEGEKMVRALFAVASV----HQPSII 61 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v---~~~----------~l~--~~~~~~~~~~l~~~~~~~~~----~~p~vl 61 (343)
+||+||+|+|||++|+++|+.+.+.-... .|. ++. ......+...++.+...+.. ....|+
T Consensus 43 YLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~ 122 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIY 122 (725)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEE
Confidence 37999999999999999999986632100 010 000 00000123335565554432 345799
Q ss_pred EecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHH
Q psy4538 62 FIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIV 141 (343)
Q Consensus 62 ~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il 141 (343)
+|||+|.+- ....+.|+..++.. ...+++|.+|+.+..+.+.+++|+. .+.|.+|+.++..+.+
T Consensus 123 IIDEa~~LT-----------~~A~NALLKtLEEP----P~~tifILaTte~~KLl~TI~SRcq-~ieF~~L~~eeI~~~L 186 (725)
T PRK07133 123 IIDEVHMLS-----------KSAFNALLKTLEEP----PKHVIFILATTEVHKIPLTILSRVQ-RFNFRRISEDEIVSRL 186 (725)
T ss_pred EEEChhhCC-----------HHHHHHHHHHhhcC----CCceEEEEEcCChhhhhHHHHhhce-eEEccCCCHHHHHHHH
Confidence 999999873 23456778877764 4466777778888999999999996 8999999999999999
Q ss_pred HHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHh
Q psy4538 142 TKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREAS 180 (343)
Q Consensus 142 ~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~ 180 (343)
+..+.+.+...+++.+..+++.+.| +.+++..++....
T Consensus 187 ~~il~kegI~id~eAl~~LA~lS~G-slR~AlslLekl~ 224 (725)
T PRK07133 187 EFILEKENISYEKNALKLIAKLSSG-SLRDALSIAEQVS 224 (725)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9998888888888889999998885 6677777777654
No 143
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.52 E-value=4.6e-13 Score=124.93 Aligned_cols=186 Identities=25% Similarity=0.345 Sum_probs=123.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccc-cccchHH-HHHHHHHHHH----HhcCCcEEEecccccccccCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTS-KWYGEGE-KMVRALFAVA----SVHQPSIIFIDEIDSLLCQRS 74 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~-~~~~~~~-~~l~~~~~~~----~~~~p~vl~iDeid~l~~~~~ 74 (343)
+||+||||||||++|+++|+.++.+|+.+++..+.. .|.|... ..+..++..+ ....++||||||+|.+..+..
T Consensus 111 iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~ 190 (412)
T PRK05342 111 ILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSE 190 (412)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccC
Confidence 589999999999999999999999999999987653 4666533 3334443321 234688999999999976532
Q ss_pred C---CchhHHHHHHHHHHHhhccCC---------CCCCCcEEEEEecCCCc-----------------------------
Q psy4538 75 D---QENETSRRLKTEFLISLDGAS---------TLDDDLVLVIGATNRPQ----------------------------- 113 (343)
Q Consensus 75 ~---~~~~~~~~~~~~ll~~l~~~~---------~~~~~~v~vi~~tn~~~----------------------------- 113 (343)
. ..+.....+++.|+..|++.. ..+....++|.|+|...
T Consensus 191 ~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~ 270 (412)
T PRK05342 191 NPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVK 270 (412)
T ss_pred CCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccc
Confidence 1 111122356677888776431 11122334444443300
Q ss_pred -----------------------hhhHHHHhccceEEEEcCCCHHHHHHHHH----HHHhh---------hCCCCChhhH
Q psy4538 114 -----------------------ELDEAARRRLVKRLYIPLPDEQARCEIVT----KLLRN---------ITNSLTVDDI 157 (343)
Q Consensus 114 -----------------------~l~~~l~~rf~~~i~~~~P~~~er~~il~----~~l~~---------~~~~~~~~~~ 157 (343)
.+.|+|..|++..+.|.+.+.++..+|+. ..+++ ....++++.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al 350 (412)
T PRK05342 271 SKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEAL 350 (412)
T ss_pred cccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHH
Confidence 13567777999889999999999999887 23332 2234578888
Q ss_pred HHHHHH--CCCCCHHHHHHHHHHHhcccccc
Q psy4538 158 EEVGRM--TTDFSGADMASLCREASLGPVRS 186 (343)
Q Consensus 158 ~~la~~--t~g~s~~dl~~l~~~a~~~a~~~ 186 (343)
+.+++. ..++-.+.|+.+++......+.+
T Consensus 351 ~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~ 381 (412)
T PRK05342 351 EAIAKKAIERKTGARGLRSILEEILLDVMFE 381 (412)
T ss_pred HHHHHhCCCCCCCCchHHHHHHHHhHHHHHh
Confidence 888885 45666788888887765554443
No 144
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=1e-12 Score=127.24 Aligned_cols=158 Identities=16% Similarity=0.181 Sum_probs=116.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc------------------------EEEEecccccccccchHHHHHHHHHHHHH--
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT------------------------FFCISASTLTSKWYGEGEKMVRALFAVAS-- 54 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~------------------------~~~v~~~~l~~~~~~~~~~~l~~~~~~~~-- 54 (343)
+|||||+|+|||++|+++|+.+++. ++.++... ......++.+...+.
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~ 114 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFP 114 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhc
Confidence 4799999999999999999998653 11121110 011223444443322
Q ss_pred --hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 55 --VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 55 --~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
.....|++|||+|.+- ....+.|+..++.. ...+++|.+|+.+..+.+.+++|+. .++|.++
T Consensus 115 p~~~~~KVvIIDEa~~Ls-----------~~a~naLLK~LEep----p~~~vfI~~tte~~kL~~tI~SRc~-~~~f~~l 178 (563)
T PRK06647 115 PASSRYRVYIIDEVHMLS-----------NSAFNALLKTIEEP----PPYIVFIFATTEVHKLPATIKSRCQ-HFNFRLL 178 (563)
T ss_pred hhcCCCEEEEEEChhhcC-----------HHHHHHHHHhhccC----CCCEEEEEecCChHHhHHHHHHhce-EEEecCC
Confidence 2456799999999872 23456677777653 4466777777778899999999997 7899999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhc
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASL 181 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~ 181 (343)
+.++..++++..+...+..++++.+..+++.+.| +.+++.+++..+..
T Consensus 179 ~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~alslLdklis 226 (563)
T PRK06647 179 SLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDAYTLFDQVVS 226 (563)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHh
Confidence 9999999999998888888899999999998886 78888888877643
No 145
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=6.6e-13 Score=129.58 Aligned_cols=159 Identities=21% Similarity=0.176 Sum_probs=118.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc------------------------EEEEecccccccccchHHHHHHHHHHHHHh-
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT------------------------FFCISASTLTSKWYGEGEKMVRALFAVASV- 55 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~------------------------~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~- 55 (343)
+|||||+|+|||++|+.+|+.+++. +++++... ..+...++.+...+..
T Consensus 41 yLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~ 114 (576)
T PRK14965 41 FLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYL 114 (576)
T ss_pred EEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhc
Confidence 4899999999999999999998653 22232211 1122334555544431
Q ss_pred ---cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 56 ---HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 56 ---~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
....|++|||+|.+- ....+.|+..++.. ...+++|.+|+.+..+.+.+++|+. .+.|..+
T Consensus 115 p~~~~~KVvIIdev~~Lt-----------~~a~naLLk~LEep----p~~~~fIl~t~~~~kl~~tI~SRc~-~~~f~~l 178 (576)
T PRK14965 115 PSRSRYKIFIIDEVHMLS-----------TNAFNALLKTLEEP----PPHVKFIFATTEPHKVPITILSRCQ-RFDFRRI 178 (576)
T ss_pred cccCCceEEEEEChhhCC-----------HHHHHHHHHHHHcC----CCCeEEEEEeCChhhhhHHHHHhhh-hhhcCCC
Confidence 235699999999873 23456788888764 4467777788888999999999996 8999999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcc
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLG 182 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~ 182 (343)
+.++....+...+++.+..++++.+..+++.+.| +.+++.+++..+...
T Consensus 179 ~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr~al~~Ldqliay 227 (576)
T PRK14965 179 PLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMRDSLSTLDQVLAF 227 (576)
T ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 9999999999999988888999999999998886 777777777665433
No 146
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.50 E-value=1.6e-12 Score=115.17 Aligned_cols=132 Identities=21% Similarity=0.259 Sum_probs=88.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccc------ccccccchHHHH-HHH-------------------HHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISAST------LTSKWYGEGEKM-VRA-------------------LFAVAS 54 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~------l~~~~~~~~~~~-l~~-------------------~~~~~~ 54 (343)
+||+||||||||++|+++|+.+|.+++.+++.. +.+.+.+..... ... .+..+.
T Consensus 24 vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~ 103 (262)
T TIGR02640 24 VHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAV 103 (262)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHHH
Confidence 589999999999999999999999999998754 222222111111 000 011122
Q ss_pred hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCC----C--------CCCCcEEEEEecCCCc-----hhhH
Q psy4538 55 VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAS----T--------LDDDLVLVIGATNRPQ-----ELDE 117 (343)
Q Consensus 55 ~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~----~--------~~~~~v~vi~~tn~~~-----~l~~ 117 (343)
..+.+|+|||++.+- ......|+..++... . .....+.+|+|+|... .+++
T Consensus 104 -~~g~~lllDEi~r~~-----------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~ 171 (262)
T TIGR02640 104 -REGFTLVYDEFTRSK-----------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQD 171 (262)
T ss_pred -HcCCEEEEcchhhCC-----------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccH
Confidence 346799999999762 233444555444311 0 0123567899998752 5688
Q ss_pred HHHhccceEEEEcCCCHHHHHHHHHHHH
Q psy4538 118 AARRRLVKRLYIPLPDEQARCEIVTKLL 145 (343)
Q Consensus 118 ~l~~rf~~~i~~~~P~~~er~~il~~~l 145 (343)
++.+||. .+.++.|+.++..+|++...
T Consensus 172 aL~~R~~-~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 172 ALLDRLI-TIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred HHHhhcE-EEECCCCCHHHHHHHHHHhh
Confidence 9999984 89999999999999998764
No 147
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=1.6e-12 Score=126.48 Aligned_cols=165 Identities=16% Similarity=0.117 Sum_probs=117.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEe-------cc--------------cccccc--cchHHHHHHHHHHHHHh--
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCIS-------AS--------------TLTSKW--YGEGEKMVRALFAVASV-- 55 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~-------~~--------------~l~~~~--~~~~~~~l~~~~~~~~~-- 55 (343)
+||+||+|+|||++|+.+|+.+++.....+ |. ++.... ...+...++.+...+..
T Consensus 49 ~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P 128 (598)
T PRK09111 49 FMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRP 128 (598)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhch
Confidence 589999999999999999999876432111 00 000000 00112345555554432
Q ss_pred --cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCC
Q psy4538 56 --HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPD 133 (343)
Q Consensus 56 --~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~ 133 (343)
....|++|||+|.+. ....+.|+..++.. ...+.+|.+|+.+..+.+.+++|+. .+.|..|+
T Consensus 129 ~~a~~KVvIIDEad~Ls-----------~~a~naLLKtLEeP----p~~~~fIl~tte~~kll~tI~SRcq-~~~f~~l~ 192 (598)
T PRK09111 129 VSARYKVYIIDEVHMLS-----------TAAFNALLKTLEEP----PPHVKFIFATTEIRKVPVTVLSRCQ-RFDLRRIE 192 (598)
T ss_pred hcCCcEEEEEEChHhCC-----------HHHHHHHHHHHHhC----CCCeEEEEEeCChhhhhHHHHhhee-EEEecCCC
Confidence 346799999999873 23456677777764 3345666667777788888999995 89999999
Q ss_pred HHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcc
Q psy4538 134 EQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLG 182 (343)
Q Consensus 134 ~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~ 182 (343)
.++..+.++..+++.+..++++.+..+++.+.| +.+++.+.+.++...
T Consensus 193 ~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr~al~~Ldkli~~ 240 (598)
T PRK09111 193 ADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVRDGLSLLDQAIAH 240 (598)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhh
Confidence 999999999999988888999899999998875 778888888776433
No 148
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.49 E-value=2.2e-13 Score=136.61 Aligned_cols=198 Identities=19% Similarity=0.268 Sum_probs=129.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccc---------cccchHHHHHHHHHHHHHhcCCcEEEecccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTS---------KWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLC 71 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~---------~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~ 71 (343)
++|+||||+|||++++.+|+.++.+++.++...... .+.|.....+...+..+....| |++|||+|.+..
T Consensus 352 i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~ 430 (784)
T PRK10787 352 LCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSS 430 (784)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhccc
Confidence 579999999999999999999999999888765421 2333333444444444443444 899999999865
Q ss_pred cCCCCchhHHHHHHHHHHHhhccCC-----------CCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHH
Q psy4538 72 QRSDQENETSRRLKTEFLISLDGAS-----------TLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEI 140 (343)
Q Consensus 72 ~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~i 140 (343)
..+.. ....++..++... ..+-+++++|+|+|.. .+++++++|+. .|.++.++.++..+|
T Consensus 431 ~~~g~-------~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~-ii~~~~~t~eek~~I 501 (784)
T PRK10787 431 DMRGD-------PASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRME-VIRLSGYTEDEKLNI 501 (784)
T ss_pred ccCCC-------HHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhccee-eeecCCCCHHHHHHH
Confidence 42211 1234444444210 1134678999999887 59999999996 899999999999999
Q ss_pred HHHHHhh----------hCCCCChhhHHHHHHH-CCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHH
Q psy4538 141 VTKLLRN----------ITNSLTVDDIEEVGRM-TTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDAL 209 (343)
Q Consensus 141 l~~~l~~----------~~~~~~~~~~~~la~~-t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~ 209 (343)
++.++.. ....++++.+..+++. +..+-.+.++..+...+...+.+..... ....-.++.+++.+.+
T Consensus 502 a~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~--~~~~v~v~~~~~~~~l 579 (784)
T PRK10787 502 AKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDK--SLKHIEINGDNLHDYL 579 (784)
T ss_pred HHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcC--CCceeeecHHHHHHHh
Confidence 9888742 1234577778887753 3445556677666655444433321110 0112357777776655
Q ss_pred H
Q psy4538 210 K 210 (343)
Q Consensus 210 ~ 210 (343)
.
T Consensus 580 g 580 (784)
T PRK10787 580 G 580 (784)
T ss_pred C
Confidence 4
No 149
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=1.6e-12 Score=121.06 Aligned_cols=164 Identities=16% Similarity=0.140 Sum_probs=113.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecc-------cccccccchHHHHHHHHHHHHHh----cCCcEEEecccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISAS-------TLTSKWYGEGEKMVRALFAVASV----HQPSIIFIDEIDSL 69 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~-------~l~~~~~~~~~~~l~~~~~~~~~----~~p~vl~iDeid~l 69 (343)
+|||||||+|||++++++++.++.+.....+. ++. .........++.++..+.. ..+.+++|||+|.+
T Consensus 42 ~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l 120 (367)
T PRK14970 42 LLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD-AASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHML 120 (367)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec-cccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhc
Confidence 47999999999999999999886522111000 010 0001122345555554432 34579999999977
Q ss_pred cccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhC
Q psy4538 70 LCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNIT 149 (343)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~ 149 (343)
.. ...+.++..++.. ....++|.+++.+..+.+.+++|+. .+.+++|+.++...++...+.+.+
T Consensus 121 ~~-----------~~~~~ll~~le~~----~~~~~~Il~~~~~~kl~~~l~sr~~-~v~~~~~~~~~l~~~l~~~~~~~g 184 (367)
T PRK14970 121 SS-----------AAFNAFLKTLEEP----PAHAIFILATTEKHKIIPTILSRCQ-IFDFKRITIKDIKEHLAGIAVKEG 184 (367)
T ss_pred CH-----------HHHHHHHHHHhCC----CCceEEEEEeCCcccCCHHHHhcce-eEecCCccHHHHHHHHHHHHHHcC
Confidence 31 2345566666543 3334555566777888899999986 789999999999999999998888
Q ss_pred CCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcc
Q psy4538 150 NSLTVDDIEEVGRMTTDFSGADMASLCREASLG 182 (343)
Q Consensus 150 ~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~ 182 (343)
..++++.+..++..+.| +.+.+.+.++.....
T Consensus 185 ~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~y 216 (367)
T PRK14970 185 IKFEDDALHIIAQKADG-ALRDALSIFDRVVTF 216 (367)
T ss_pred CCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHh
Confidence 88899999999998774 677777777665443
No 150
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=7.4e-13 Score=121.78 Aligned_cols=196 Identities=20% Similarity=0.309 Sum_probs=133.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc-----EEEEeccccccccc---------------ch-HHHHHHHHHHHHHh-cCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT-----FFCISASTLTSKWY---------------GE-GEKMVRALFAVASV-HQP 58 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~-----~~~v~~~~l~~~~~---------------~~-~~~~l~~~~~~~~~-~~p 58 (343)
+++|||||||||.+++.+++++.-. ++++||....+.+. |. ..+....+++.... ...
T Consensus 45 ~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~ 124 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKT 124 (366)
T ss_pred EEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCe
Confidence 5799999999999999999998433 89999976543321 11 12223333333322 346
Q ss_pred cEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCc---hhhHHHHhccc-eEEEEcCCCH
Q psy4538 59 SIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ---ELDEAARRRLV-KRLYIPLPDE 134 (343)
Q Consensus 59 ~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~---~l~~~l~~rf~-~~i~~~~P~~ 134 (343)
.|++|||+|.|..+.+ ..+..+++.. .....++.+|+.+|..+ .+++.+.+++. ..|.||+++.
T Consensus 125 ~IvvLDEid~L~~~~~--------~~LY~L~r~~----~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a 192 (366)
T COG1474 125 VIVILDEVDALVDKDG--------EVLYSLLRAP----GENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTA 192 (366)
T ss_pred EEEEEcchhhhccccc--------hHHHHHHhhc----cccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCH
Confidence 6899999999976543 2223333322 22256788999998864 77888998776 5589999999
Q ss_pred HHHHHHHHHHHhh--hCCCCChhhHHHHHHHCCCC--CHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHH
Q psy4538 135 QARCEIVTKLLRN--ITNSLTVDDIEEVGRMTTDF--SGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALK 210 (343)
Q Consensus 135 ~er~~il~~~l~~--~~~~~~~~~~~~la~~t~g~--s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~ 210 (343)
+|..+|+....+. ....+++..+..+|...... ..+-...+|+.|+..|.++ +.+.++.+++..+..
T Consensus 193 ~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~---------~~~~v~~~~v~~a~~ 263 (366)
T COG1474 193 EELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAERE---------GSRKVSEDHVREAQE 263 (366)
T ss_pred HHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhh---------CCCCcCHHHHHHHHH
Confidence 9999999988874 23455666666665443221 4455567788888888766 567788888888866
Q ss_pred hcCCCcc
Q psy4538 211 TVRPSVC 217 (343)
Q Consensus 211 ~~~ps~~ 217 (343)
...+...
T Consensus 264 ~~~~~~~ 270 (366)
T COG1474 264 EIERDVL 270 (366)
T ss_pred HhhHHHH
Confidence 6655443
No 151
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=2e-12 Score=123.55 Aligned_cols=160 Identities=21% Similarity=0.207 Sum_probs=117.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC------------------------cEEEEecccccccccchHHHHHHHHHHHHHh-
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA------------------------TFFCISASTLTSKWYGEGEKMVRALFAVASV- 55 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~------------------------~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~- 55 (343)
+|||||+|+|||++|+++++.+.+ .++.++...- .+-..++.+......
T Consensus 39 yLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~ 112 (535)
T PRK08451 39 YLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYK 112 (535)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhC
Confidence 379999999999999999998742 1233322110 012334444443221
Q ss_pred ---cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 56 ---HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 56 ---~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
....|++|||+|.+- ....+.|+..++.. ...+.+|.+|+.+..+.+.+++|+. .++|.++
T Consensus 113 P~~~~~KVvIIDEad~Lt-----------~~A~NALLK~LEEp----p~~t~FIL~ttd~~kL~~tI~SRc~-~~~F~~L 176 (535)
T PRK08451 113 PSMARFKIFIIDEVHMLT-----------KEAFNALLKTLEEP----PSYVKFILATTDPLKLPATILSRTQ-HFRFKQI 176 (535)
T ss_pred cccCCeEEEEEECcccCC-----------HHHHHHHHHHHhhc----CCceEEEEEECChhhCchHHHhhce-eEEcCCC
Confidence 234699999999873 34456778888775 3345566666777999999999975 8999999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhccc
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGP 183 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a 183 (343)
+.++..+.+...++..+...+++.+..+++.+.| +.+++.+++..+...+
T Consensus 177 s~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR~alnlLdqai~~~ 226 (535)
T PRK08451 177 PQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLRDTLTLLDQAIIYC 226 (535)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhc
Confidence 9999999999999988888899999999998875 8888888888776544
No 152
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.48 E-value=5.3e-13 Score=122.31 Aligned_cols=123 Identities=19% Similarity=0.351 Sum_probs=81.1
Q ss_pred CCcEEEecccccccccCC-CCchhHHHHHHHHHHHhhccCCC------CCCCcEEEEEec----CCCchhhHHHHhccce
Q psy4538 57 QPSIIFIDEIDSLLCQRS-DQENETSRRLKTEFLISLDGAST------LDDDLVLVIGAT----NRPQELDEAARRRLVK 125 (343)
Q Consensus 57 ~p~vl~iDeid~l~~~~~-~~~~~~~~~~~~~ll~~l~~~~~------~~~~~v~vi~~t----n~~~~l~~~l~~rf~~ 125 (343)
+.+|+||||+|+++.+.. .+.+-....+++.||..+++..- ....++++|++- ..|..+-|.|.-||..
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 326 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPI 326 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 456999999999987652 22233345577788888876332 234567787765 3466788899999999
Q ss_pred EEEEcCCCHHHHHHHHH----HHHhhhC---------CCCChhhHHHHHHHC-------CCCCHHHHHHHHHHH
Q psy4538 126 RLYIPLPDEQARCEIVT----KLLRNIT---------NSLTVDDIEEVGRMT-------TDFSGADMASLCREA 179 (343)
Q Consensus 126 ~i~~~~P~~~er~~il~----~~l~~~~---------~~~~~~~~~~la~~t-------~g~s~~dl~~l~~~a 179 (343)
.+.+..++.+....||. .+.+++. ..++++.+..+|+.. .+.-.+-|+.++...
T Consensus 327 ~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~ 400 (441)
T TIGR00390 327 RVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERL 400 (441)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHH
Confidence 99999999999998882 3333321 233566666666654 233444455555444
No 153
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.47 E-value=1.4e-12 Score=121.02 Aligned_cols=186 Identities=24% Similarity=0.347 Sum_probs=124.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccc-ccccchH-HHHHHHHHHHH----HhcCCcEEEecccccccccCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLT-SKWYGEG-EKMVRALFAVA----SVHQPSIIFIDEIDSLLCQRS 74 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~-~~~~~~~-~~~l~~~~~~~----~~~~p~vl~iDeid~l~~~~~ 74 (343)
+||+||||||||++|+++|+.++.+|..+++..+. ..|.|.. +..+..++... ....++||||||+|.+..+..
T Consensus 119 iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~ 198 (413)
T TIGR00382 119 ILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSE 198 (413)
T ss_pred EEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhc
Confidence 58999999999999999999999999999988764 2455653 33344443321 234678999999999976532
Q ss_pred CC---chhHHHHHHHHHHHhhccCCC---------CCCCcEEEEEecCCC------------------------------
Q psy4538 75 DQ---ENETSRRLKTEFLISLDGAST---------LDDDLVLVIGATNRP------------------------------ 112 (343)
Q Consensus 75 ~~---~~~~~~~~~~~ll~~l~~~~~---------~~~~~v~vi~~tn~~------------------------------ 112 (343)
.. .+.....+++.|+..+++... .+..+.++|.|+|..
T Consensus 199 ~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~ 278 (413)
T TIGR00382 199 NPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVK 278 (413)
T ss_pred cccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhcccccccccc
Confidence 21 111122456667777754321 122345566665540
Q ss_pred -------c-------------hhhHHHHhccceEEEEcCCCHHHHHHHHHH----HHhh---------hCCCCChhhHHH
Q psy4538 113 -------Q-------------ELDEAARRRLVKRLYIPLPDEQARCEIVTK----LLRN---------ITNSLTVDDIEE 159 (343)
Q Consensus 113 -------~-------------~l~~~l~~rf~~~i~~~~P~~~er~~il~~----~l~~---------~~~~~~~~~~~~ 159 (343)
. .+.|+|..|++..+.|.+.+.++..+|+.. ++++ ....++++.++.
T Consensus 279 ~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~ 358 (413)
T TIGR00382 279 KKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKA 358 (413)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHH
Confidence 0 134677779998889999999999998865 2332 223457788888
Q ss_pred HHHH--CCCCCHHHHHHHHHHHhcccccc
Q psy4538 160 VGRM--TTDFSGADMASLCREASLGPVRS 186 (343)
Q Consensus 160 la~~--t~g~s~~dl~~l~~~a~~~a~~~ 186 (343)
+++. ...+-.+.|+.+++......+-+
T Consensus 359 Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e 387 (413)
T TIGR00382 359 IAKKALERKTGARGLRSIVEGLLLDVMFD 387 (413)
T ss_pred HHHhCCCCCCCchHHHHHHHHhhHHHHhh
Confidence 9886 45667788888888776555544
No 154
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.47 E-value=3.7e-12 Score=116.37 Aligned_cols=181 Identities=20% Similarity=0.225 Sum_probs=118.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC-----CcEEEEecccccccccchHHHHHHHHHHHHHh--cCCcEEEecccccccccC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK-----ATFFCISASTLTSKWYGEGEKMVRALFAVASV--HQPSIIFIDEIDSLLCQR 73 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~-----~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~--~~p~vl~iDeid~l~~~~ 73 (343)
++|+||||+|||++++++++++. ..++.+++++.... ......+......... ..+.+++|||+|.+..
T Consensus 41 ~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-- 116 (319)
T PRK00440 41 LLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGI--DVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-- 116 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccch--HHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH--
Confidence 48999999999999999999873 34455544432110 0011111111111101 2356999999998732
Q ss_pred CCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhCCCCC
Q psy4538 74 SDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLT 153 (343)
Q Consensus 74 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~ 153 (343)
.....+...++... ....+|.+++.+..+.+.+.+|+. .+++++|+.++...+++..+++.+..++
T Consensus 117 ---------~~~~~L~~~le~~~----~~~~lIl~~~~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~ 182 (319)
T PRK00440 117 ---------DAQQALRRTMEMYS----QNTRFILSCNYSSKIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAENEGIEIT 182 (319)
T ss_pred ---------HHHHHHHHHHhcCC----CCCeEEEEeCCccccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 11234555554432 223455567777778888889987 6899999999999999999998888889
Q ss_pred hhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCC
Q psy4538 154 VDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRP 214 (343)
Q Consensus 154 ~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~p 214 (343)
++.+..+++.+.| +.+.+.+.++.++.. ...|+.+++..++....+
T Consensus 183 ~~al~~l~~~~~g-d~r~~~~~l~~~~~~--------------~~~it~~~v~~~~~~~~~ 228 (319)
T PRK00440 183 DDALEAIYYVSEG-DMRKAINALQAAAAT--------------GKEVTEEAVYKITGTARP 228 (319)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHc--------------CCCCCHHHHHHHhCCCCH
Confidence 9999999998875 555655555554432 135888888777654433
No 155
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.46 E-value=4.1e-12 Score=108.31 Aligned_cols=159 Identities=19% Similarity=0.260 Sum_probs=115.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchHHHHHHHHHHHHH-hcCCcEEEecccccccccCCCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEGEKMVRALFAVAS-VHQPSIIFIDEIDSLLCQRSDQ 76 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~-~~~p~vl~iDeid~l~~~~~~~ 76 (343)
+||+|++|||||++++++..+. |..++++...++.. +..++...+ ...+-|||+||+- +..
T Consensus 55 vLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~---------l~~l~~~l~~~~~kFIlf~DDLs--Fe~---- 119 (249)
T PF05673_consen 55 VLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGD---------LPELLDLLRDRPYKFILFCDDLS--FEE---- 119 (249)
T ss_pred eEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhcc---------HHHHHHHHhcCCCCEEEEecCCC--CCC----
Confidence 6899999999999999999977 67888887766533 333444433 2346699999864 211
Q ss_pred chhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhH-----------------------HHHhccceEEEEcCCC
Q psy4538 77 ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDE-----------------------AARRRLVKRLYIPLPD 133 (343)
Q Consensus 77 ~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~-----------------------~l~~rf~~~i~~~~P~ 133 (343)
.......|...+++.-...+.+|++.+|+|+...+++ ++..||..++.|.+|+
T Consensus 120 ----~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~ 195 (249)
T PF05673_consen 120 ----GDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPD 195 (249)
T ss_pred ----CcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCC
Confidence 1122355666677766666888999999987543321 3445999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCCChhhHHH----HHHHCCCCCHHHHHHHHHH
Q psy4538 134 EQARCEIVTKLLRNITNSLTVDDIEE----VGRMTTDFSGADMASLCRE 178 (343)
Q Consensus 134 ~~er~~il~~~l~~~~~~~~~~~~~~----la~~t~g~s~~dl~~l~~~ 178 (343)
.++-.+|++++++.++..++.+.+.. .+..-.|.|++-..+.+..
T Consensus 196 q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 196 QEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTARQFIDD 244 (249)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999999999999988888655543 3445677888887777654
No 156
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=2.6e-12 Score=120.43 Aligned_cols=185 Identities=18% Similarity=0.169 Sum_probs=120.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE----------Eeccc------cc-------ccccc---hHHHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC----------ISAST------LT-------SKWYG---EGEKMVRALFAVAS 54 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~----------v~~~~------l~-------~~~~~---~~~~~l~~~~~~~~ 54 (343)
+||+||+|+|||++|+++|+.+.+.-.. -.|.. +. ..+.+ .....++.+.....
T Consensus 41 ~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~ 120 (397)
T PRK14955 41 YIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVR 120 (397)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHh
Confidence 4799999999999999999999763100 00100 00 00001 11233444443332
Q ss_pred ----hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEc
Q psy4538 55 ----VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIP 130 (343)
Q Consensus 55 ----~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~ 130 (343)
.....|++|||+|.+.. ...+.++..++.. ....++|.+++.+..+.+.+++|+. .++|.
T Consensus 121 ~~p~~~~~kvvIIdea~~l~~-----------~~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~sR~~-~v~f~ 184 (397)
T PRK14955 121 YGPQKGRYRVYIIDEVHMLSI-----------AAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIASRCQ-RFNFK 184 (397)
T ss_pred hchhcCCeEEEEEeChhhCCH-----------HHHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHHHHH-HhhcC
Confidence 12346999999998831 2344566666643 3345555566667888888999986 88999
Q ss_pred CCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHH
Q psy4538 131 LPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALK 210 (343)
Q Consensus 131 ~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~ 210 (343)
+++.++..+.++..++..+..++++.+..++..+.| +.+.+.+.++.....+... .....|+.+++.+.+.
T Consensus 185 ~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g-~lr~a~~~L~kl~~~~~~~--------~~~~~It~~~v~~~v~ 255 (397)
T PRK14955 185 RIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQG-SMRDAQSILDQVIAFSVES--------EGEGSIRYDKVAELLN 255 (397)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcccc--------CCCCccCHHHHHHHHC
Confidence 999999999999999888788999999999998875 6777777777654433210 0123577777666553
No 157
>KOG1969|consensus
Probab=99.46 E-value=1.5e-12 Score=124.17 Aligned_cols=165 Identities=19% Similarity=0.201 Sum_probs=114.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHH----hcCCcEEEecccccccccCCCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVAS----VHQPSIIFIDEIDSLLCQRSDQ 76 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~----~~~p~vl~iDeid~l~~~~~~~ 76 (343)
+||+||||-||||||+.+|++.|+.++++|+++-.+.. .....+..+...-. ..+|..|+|||||.-.
T Consensus 329 lLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~--~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~------ 400 (877)
T KOG1969|consen 329 LLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAP--MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP------ 400 (877)
T ss_pred EEeecCCCCChhHHHHHHHHhcCceEEEecccccccHH--HHHHHHHHHHhhccccccCCCcceEEEecccCCc------
Confidence 58999999999999999999999999999999875542 22333333333221 2569999999999431
Q ss_pred chhHHHHHHHHHHHhhc--cCC--CCCC-------------CcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHH
Q psy4538 77 ENETSRRLKTEFLISLD--GAS--TLDD-------------DLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQAR 137 (343)
Q Consensus 77 ~~~~~~~~~~~ll~~l~--~~~--~~~~-------------~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er 137 (343)
...+..++..+. +.. ...+ -.-.|||+||.. ..|+++. -+...+.|.+|.....
T Consensus 401 -----~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~L 473 (877)
T KOG1969|consen 401 -----RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRL 473 (877)
T ss_pred -----HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCCChhHH
Confidence 222222332222 000 0000 112467778874 4556655 5778899999999999
Q ss_pred HHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccc
Q psy4538 138 CEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPV 184 (343)
Q Consensus 138 ~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~ 184 (343)
.+-|+..+...+...+...+..|++.+.+ ||++.++.-...+.
T Consensus 474 v~RL~~IC~rE~mr~d~~aL~~L~el~~~----DIRsCINtLQfLa~ 516 (877)
T KOG1969|consen 474 VERLNEICHRENMRADSKALNALCELTQN----DIRSCINTLQFLAS 516 (877)
T ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHHHHHHHH
Confidence 99999999998888888899999998874 88888877654443
No 158
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=4.9e-12 Score=119.97 Aligned_cols=157 Identities=18% Similarity=0.201 Sum_probs=111.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc-------------------------EEEEecccccccccchHHHHHHHHHHHH--
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT-------------------------FFCISASTLTSKWYGEGEKMVRALFAVA-- 53 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~-------------------------~~~v~~~~l~~~~~~~~~~~l~~~~~~~-- 53 (343)
+|||||+|+|||++|+.+|+.+.+. ++.+++... .+-..++.+....
T Consensus 42 ~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~~------~gid~ir~i~~~l~~ 115 (451)
T PRK06305 42 YLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASH------RGIEDIRQINETVLF 115 (451)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeecccc------CCHHHHHHHHHHHHh
Confidence 4799999999999999999988542 222222111 0112233222222
Q ss_pred --HhcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcC
Q psy4538 54 --SVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPL 131 (343)
Q Consensus 54 --~~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~ 131 (343)
......|++|||+|.+. ....+.|+..++.. ...+++|.+++.+..+.+.+++|+. .++|+.
T Consensus 116 ~~~~~~~kvvIIdead~lt-----------~~~~n~LLk~lEep----~~~~~~Il~t~~~~kl~~tI~sRc~-~v~f~~ 179 (451)
T PRK06305 116 TPSKSRYKIYIIDEVHMLT-----------KEAFNSLLKTLEEP----PQHVKFFLATTEIHKIPGTILSRCQ-KMHLKR 179 (451)
T ss_pred hhhcCCCEEEEEecHHhhC-----------HHHHHHHHHHhhcC----CCCceEEEEeCChHhcchHHHHhce-EEeCCC
Confidence 22457899999999873 12345677777764 3356666777888899999999997 799999
Q ss_pred CCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHh
Q psy4538 132 PDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREAS 180 (343)
Q Consensus 132 P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~ 180 (343)
++.++..+.+...++..+..++++.+..++..+.| +.+.+.+.+....
T Consensus 180 l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr~a~~~Lekl~ 227 (451)
T PRK06305 180 IPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SLRDAESLYDYVV 227 (451)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 99999999999988888778899899999998875 6666666666543
No 159
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.45 E-value=7.1e-13 Score=121.56 Aligned_cols=123 Identities=20% Similarity=0.381 Sum_probs=81.5
Q ss_pred CCcEEEecccccccccCCC-CchhHHHHHHHHHHHhhccCCC------CCCCcEEEEEec----CCCchhhHHHHhccce
Q psy4538 57 QPSIIFIDEIDSLLCQRSD-QENETSRRLKTEFLISLDGAST------LDDDLVLVIGAT----NRPQELDEAARRRLVK 125 (343)
Q Consensus 57 ~p~vl~iDeid~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~------~~~~~v~vi~~t----n~~~~l~~~l~~rf~~ 125 (343)
+.+|+||||||+++.+.+. +.+-....++..||..+++..- ....++++|++- ..|..+-|.|.-||..
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 328 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPI 328 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 4569999999999876532 2233345577788888876332 234667787764 4466778999999999
Q ss_pred EEEEcCCCHHHHHHHHH----HHHhhh---------CCCCChhhHHHHHHHCC-------CCCHHHHHHHHHHH
Q psy4538 126 RLYIPLPDEQARCEIVT----KLLRNI---------TNSLTVDDIEEVGRMTT-------DFSGADMASLCREA 179 (343)
Q Consensus 126 ~i~~~~P~~~er~~il~----~~l~~~---------~~~~~~~~~~~la~~t~-------g~s~~dl~~l~~~a 179 (343)
.+.+..++.+....||. .+++++ ...++++.++.+|+... +.-.+-|+.++...
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~ 402 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKL 402 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHH
Confidence 99999999999999883 344432 12345666666666542 33444455555444
No 160
>PRK04132 replication factor C small subunit; Provisional
Probab=99.44 E-value=5.5e-12 Score=125.94 Aligned_cols=154 Identities=16% Similarity=0.153 Sum_probs=118.7
Q ss_pred EeC--CCCchHHHHHHHHHHHc-----CCcEEEEecccccccccchHHHHHHHHHHHHHhc------CCcEEEecccccc
Q psy4538 3 LFG--PPGTGKTLIGKCVAAQC-----KATFFCISASTLTSKWYGEGEKMVRALFAVASVH------QPSIIFIDEIDSL 69 (343)
Q Consensus 3 l~G--p~GtGKT~la~~la~~l-----~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~------~p~vl~iDeid~l 69 (343)
..| |++.||||+|+++|+++ +.+++++|+++..+. ..++.+...+... ...|++|||+|.|
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~L 642 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADAL 642 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEEECcccC
Confidence 457 99999999999999998 568999999985332 2344444433221 2369999999988
Q ss_pred cccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhC
Q psy4538 70 LCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNIT 149 (343)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~ 149 (343)
- ....+.|+..++.. ...+.+|.+||.+..+.+.+++||. .+.|++|+.++....++..+.+.+
T Consensus 643 t-----------~~AQnALLk~lEep----~~~~~FILi~N~~~kIi~tIrSRC~-~i~F~~ls~~~i~~~L~~I~~~Eg 706 (846)
T PRK04132 643 T-----------QDAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEG 706 (846)
T ss_pred C-----------HHHHHHHHHHhhCC----CCCeEEEEEeCChhhCchHHhhhce-EEeCCCCCHHHHHHHHHHHHHhcC
Confidence 3 23456788888764 4467888899999999999999996 899999999999999999988877
Q ss_pred CCCChhhHHHHHHHCCCCCHHHHHHHHHHH
Q psy4538 150 NSLTVDDIEEVGRMTTDFSGADMASLCREA 179 (343)
Q Consensus 150 ~~~~~~~~~~la~~t~g~s~~dl~~l~~~a 179 (343)
..++++.+..++..+.| +.+..-++++.+
T Consensus 707 i~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~ 735 (846)
T PRK04132 707 LELTEEGLQAILYIAEG-DMRRAINILQAA 735 (846)
T ss_pred CCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 77888899999998886 444444555544
No 161
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.44 E-value=2.1e-12 Score=119.93 Aligned_cols=147 Identities=19% Similarity=0.302 Sum_probs=99.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcE-----------------------EEEecccccccccchHHHHHHHHHHHHHh--
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATF-----------------------FCISASTLTSKWYGEGEKMVRALFAVASV-- 55 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~-----------------------~~v~~~~l~~~~~~~~~~~l~~~~~~~~~-- 55 (343)
+||+||+|+|||++|+++|+.+.+.- ..+.+.. . ......++.+++.+..
T Consensus 39 ~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~---~--~i~i~~iR~l~~~~~~~p 113 (394)
T PRK07940 39 WLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEG---L--SIGVDEVRELVTIAARRP 113 (394)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEecccc---c--cCCHHHHHHHHHHHHhCc
Confidence 47999999999999999999875531 1121111 0 0122345666665542
Q ss_pred --cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCC
Q psy4538 56 --HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPD 133 (343)
Q Consensus 56 --~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~ 133 (343)
....|++|||+|.+. ....+.|+..++.. ...+++|.+|+.++.+.+.++||+. .+.|++|+
T Consensus 114 ~~~~~kViiIDead~m~-----------~~aanaLLk~LEep----~~~~~fIL~a~~~~~llpTIrSRc~-~i~f~~~~ 177 (394)
T PRK07940 114 STGRWRIVVIEDADRLT-----------ERAANALLKAVEEP----PPRTVWLLCAPSPEDVLPTIRSRCR-HVALRTPS 177 (394)
T ss_pred ccCCcEEEEEechhhcC-----------HHHHHHHHHHhhcC----CCCCeEEEEECChHHChHHHHhhCe-EEECCCCC
Confidence 234699999999883 22345677777654 2234444455558999999999995 89999999
Q ss_pred HHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHH
Q psy4538 134 EQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMA 173 (343)
Q Consensus 134 ~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~ 173 (343)
.++..+++... . ..+++....++..+.|..+..+.
T Consensus 178 ~~~i~~~L~~~---~--~~~~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 178 VEAVAEVLVRR---D--GVDPETARRAARASQGHIGRARR 212 (394)
T ss_pred HHHHHHHHHHh---c--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 99987777632 1 24566777888888886654443
No 162
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=4.6e-12 Score=124.14 Aligned_cols=156 Identities=21% Similarity=0.222 Sum_probs=114.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc--------------------------EEEEecccccccccchHHHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT--------------------------FFCISASTLTSKWYGEGEKMVRALFAVAS 54 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~--------------------------~~~v~~~~l~~~~~~~~~~~l~~~~~~~~ 54 (343)
+||+||+|+|||++|+++|+.+++. +++++.. .......++.++..+.
T Consensus 41 ~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~ 114 (620)
T PRK14948 41 YLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQ 114 (620)
T ss_pred EEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHh
Confidence 4899999999999999999998763 1122111 1123345666665543
Q ss_pred h----cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEc
Q psy4538 55 V----HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIP 130 (343)
Q Consensus 55 ~----~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~ 130 (343)
. ....|++|||+|.|- ....+.|+..++.. ...+++|++|+.+..+-+.+++|+. .++|.
T Consensus 115 ~~p~~~~~KViIIDEad~Lt-----------~~a~naLLK~LEeP----p~~tvfIL~t~~~~~llpTIrSRc~-~~~f~ 178 (620)
T PRK14948 115 FAPVQARWKVYVIDECHMLS-----------TAAFNALLKTLEEP----PPRVVFVLATTDPQRVLPTIISRCQ-RFDFR 178 (620)
T ss_pred hChhcCCceEEEEECccccC-----------HHHHHHHHHHHhcC----CcCeEEEEEeCChhhhhHHHHhhee-EEEec
Confidence 2 335699999999872 23456778888753 4456777777778888899999996 78999
Q ss_pred CCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHH
Q psy4538 131 LPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREA 179 (343)
Q Consensus 131 ~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a 179 (343)
.++.++....+...+.+.+..++++.+..+++.+.| ..+++.++++..
T Consensus 179 ~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~lr~A~~lLekl 226 (620)
T PRK14948 179 RIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-GLRDAESLLDQL 226 (620)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 999998888888888887778888889999998886 456666666543
No 163
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.44 E-value=1.4e-12 Score=123.14 Aligned_cols=165 Identities=21% Similarity=0.228 Sum_probs=127.1
Q ss_pred EEeCCCCchHHHHHHHHHHHcCCcEE-E-Ee------ccccccc-c---------cchHHHHHHHHHHHHH----hcCCc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCKATFF-C-IS------ASTLTSK-W---------YGEGEKMVRALFAVAS----VHQPS 59 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~~~~~-~-v~------~~~l~~~-~---------~~~~~~~l~~~~~~~~----~~~p~ 59 (343)
||+||.|+|||++||.+|+.+++.-- . -- |..+... + ...+-..++.+.+... ...+.
T Consensus 42 lfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryK 121 (515)
T COG2812 42 LFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYK 121 (515)
T ss_pred hhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccce
Confidence 68999999999999999999976521 0 00 1111000 0 0112334555555543 24567
Q ss_pred EEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHH
Q psy4538 60 IIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCE 139 (343)
Q Consensus 60 vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~ 139 (343)
|++|||+|.| +....+.|+..++.. ..+|.+|.+|..+..++..+++|+. .+.|..-+.++...
T Consensus 122 VyiIDEvHML-----------S~~afNALLKTLEEP----P~hV~FIlATTe~~Kip~TIlSRcq-~f~fkri~~~~I~~ 185 (515)
T COG2812 122 VYIIDEVHML-----------SKQAFNALLKTLEEP----PSHVKFILATTEPQKIPNTILSRCQ-RFDFKRLDLEEIAK 185 (515)
T ss_pred EEEEecHHhh-----------hHHHHHHHhcccccC----ccCeEEEEecCCcCcCchhhhhccc-cccccCCCHHHHHH
Confidence 9999999976 345677788888764 6688999999999999999999997 88999999999999
Q ss_pred HHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhccc
Q psy4538 140 IVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGP 183 (343)
Q Consensus 140 il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a 183 (343)
.+...+.+.+...+++.+..+++...| +.+|...++.++...+
T Consensus 186 ~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslLDq~i~~~ 228 (515)
T COG2812 186 HLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLLDQAIAFG 228 (515)
T ss_pred HHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHHHHHHHcc
Confidence 999999999999999999999999986 8899999999886554
No 164
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=1e-11 Score=121.14 Aligned_cols=165 Identities=16% Similarity=0.152 Sum_probs=112.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE----------Eeccc------cc-------ccccc---hHHHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC----------ISAST------LT-------SKWYG---EGEKMVRALFAVAS 54 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~----------v~~~~------l~-------~~~~~---~~~~~l~~~~~~~~ 54 (343)
+||+||+|+|||++|+.+|+.+++.-.. -.|.. +. ..+.+ .....++.+.+...
T Consensus 41 ~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~ 120 (620)
T PRK14954 41 YIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVR 120 (620)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHH
Confidence 4799999999999999999999773100 00100 00 00001 11233444443332
Q ss_pred ----hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEc
Q psy4538 55 ----VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIP 130 (343)
Q Consensus 55 ----~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~ 130 (343)
.....|++|||+|.+. ....+.|+..++.. ...+++|.+++.+..+.+.+++|+. .++|.
T Consensus 121 ~~P~~~~~KVvIIdEad~Lt-----------~~a~naLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~SRc~-~vef~ 184 (620)
T PRK14954 121 YGPQKGRYRVYIIDEVHMLS-----------TAAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIASRCQ-RFNFK 184 (620)
T ss_pred hhhhcCCCEEEEEeChhhcC-----------HHHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHhhce-EEecC
Confidence 2345699999999873 12345677777764 3345556666677888889999996 89999
Q ss_pred CCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcc
Q psy4538 131 LPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLG 182 (343)
Q Consensus 131 ~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~ 182 (343)
.++.++....+...++..+..++++.+..+++.+.| +.+++.+.+......
T Consensus 185 ~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G-dlr~al~eLeKL~~y 235 (620)
T PRK14954 185 RIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG-SMRDAQSILDQVIAF 235 (620)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHHHHHHHHHHHh
Confidence 999999999999988887778899999999998885 666666666654433
No 165
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.42 E-value=4.6e-12 Score=126.35 Aligned_cols=168 Identities=16% Similarity=0.223 Sum_probs=112.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccccc-----ccch----HH-HHHHHHHHHHHhcCCcEEEeccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSK-----WYGE----GE-KMVRALFAVASVHQPSIIFIDEIDSLL 70 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~-----~~~~----~~-~~l~~~~~~~~~~~p~vl~iDeid~l~ 70 (343)
+||+||||||||++|+++|+.++.+++.++++++... ..|. .. ..-..+....+....+||+|||+|.+.
T Consensus 491 ~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~ 570 (758)
T PRK11034 491 FLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH 570 (758)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh
Confidence 5899999999999999999999999999998876431 1111 00 000112222333456899999999873
Q ss_pred ccCCCCchhHHHHHHHHHHHhhccCCC-------CCCCcEEEEEecCCC-------------------------chhhHH
Q psy4538 71 CQRSDQENETSRRLKTEFLISLDGAST-------LDDDLVLVIGATNRP-------------------------QELDEA 118 (343)
Q Consensus 71 ~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~v~vi~~tn~~-------------------------~~l~~~ 118 (343)
..+.+.|+..++...- ..-.++++|.|||.- ..+.|.
T Consensus 571 -----------~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pe 639 (758)
T PRK11034 571 -----------PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPE 639 (758)
T ss_pred -----------HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHH
Confidence 3455666666653221 122467888888832 125578
Q ss_pred HHhccceEEEEcCCCHHHHHHHHHHHHhh---------hCCCCChhhHHHHHHHC--CCCCHHHHHHHHHHH
Q psy4538 119 ARRRLVKRLYIPLPDEQARCEIVTKLLRN---------ITNSLTVDDIEEVGRMT--TDFSGADMASLCREA 179 (343)
Q Consensus 119 l~~rf~~~i~~~~P~~~er~~il~~~l~~---------~~~~~~~~~~~~la~~t--~g~s~~dl~~l~~~a 179 (343)
+..|++..+.|++.+.++..+|+...+.. ....+++..++.|++.. ..+-.+.++.+++.-
T Consensus 640 fl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~ 711 (758)
T PRK11034 640 FRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDN 711 (758)
T ss_pred HHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHH
Confidence 88899999999999999999998876653 23345677777777643 334556666666554
No 166
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.42 E-value=6.4e-12 Score=123.51 Aligned_cols=198 Identities=23% Similarity=0.300 Sum_probs=119.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----------CCcEEEEeccccccc-------ccchHHH----HHHHHHHH-------
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----------KATFFCISASTLTSK-------WYGEGEK----MVRALFAV------- 52 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~~~~l~~~-------~~~~~~~----~l~~~~~~------- 52 (343)
++|+||||||||++|+.+.+.. +.+|+.+++..+... +.+.... ..+..+..
T Consensus 178 vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~ 257 (615)
T TIGR02903 178 IILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPK 257 (615)
T ss_pred EEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchh
Confidence 5899999999999999998755 357889988765210 1111000 00011110
Q ss_pred ---HHhcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCC------------------------CCCCCcEEE
Q psy4538 53 ---ASVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAS------------------------TLDDDLVLV 105 (343)
Q Consensus 53 ---~~~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~------------------------~~~~~~v~v 105 (343)
....++++|||||++.|-. .....++..++... ......+++
T Consensus 258 ~g~v~~asgGvL~LDEi~~Ld~-----------~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VL 326 (615)
T TIGR02903 258 TGLVTDAHGGVLFIDEIGELDP-----------LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVL 326 (615)
T ss_pred cCchhhcCCCeEEEeccccCCH-----------HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEE
Confidence 0122467999999998732 22233333333211 001223555
Q ss_pred EE-ecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccc
Q psy4538 106 IG-ATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPV 184 (343)
Q Consensus 106 i~-~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~ 184 (343)
++ +++.+..+++++++||. .+.+++++.++..+|++..+......++++.++.+++.+. .++...+.+..+...+.
T Consensus 327 I~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~ 403 (615)
T TIGR02903 327 IGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYAL 403 (615)
T ss_pred EEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHH
Confidence 55 45678889999999997 6789999999999999999988766788888888888765 34444444444332221
Q ss_pred cccccccccccCCcccChhHHHHHHHhcC
Q psy4538 185 RSIDLSRIDALDVRPISIDDFRDALKTVR 213 (343)
Q Consensus 185 ~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 213 (343)
.+... .........|+.+|+.+++..-+
T Consensus 404 ~~~~~-~~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 404 YRAAE-AGKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHH-hccCCCCeeECHHHHHHHhCCCc
Confidence 11100 00011235689999999887543
No 167
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=1e-11 Score=121.78 Aligned_cols=157 Identities=19% Similarity=0.218 Sum_probs=111.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcE-------------------------EEEecccccccccchHHHHHHHHHHHHH-
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATF-------------------------FCISASTLTSKWYGEGEKMVRALFAVAS- 54 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~-------------------------~~v~~~~l~~~~~~~~~~~l~~~~~~~~- 54 (343)
+||+||+|+|||++|+.+|+.+++.. +.++... ......++.+.....
T Consensus 41 ~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~ 114 (585)
T PRK14950 41 YLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQF 114 (585)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhh
Confidence 48999999999999999999886422 1112110 011223344433322
Q ss_pred ---hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcC
Q psy4538 55 ---VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPL 131 (343)
Q Consensus 55 ---~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~ 131 (343)
.....|++|||+|.|. ....+.|+..++.. ...+++|.+++....+.+.+++|+. .+.|..
T Consensus 115 ~p~~~~~kVvIIDEa~~L~-----------~~a~naLLk~LEep----p~~tv~Il~t~~~~kll~tI~SR~~-~i~f~~ 178 (585)
T PRK14950 115 RPALARYKVYIIDEVHMLS-----------TAAFNALLKTLEEP----PPHAIFILATTEVHKVPATILSRCQ-RFDFHR 178 (585)
T ss_pred CcccCCeEEEEEeChHhCC-----------HHHHHHHHHHHhcC----CCCeEEEEEeCChhhhhHHHHhccc-eeeCCC
Confidence 1345699999999873 13345677777664 2345666667777788888999986 789999
Q ss_pred CCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHh
Q psy4538 132 PDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREAS 180 (343)
Q Consensus 132 P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~ 180 (343)
++..+...++...+...+..++++.+..+++.+.| +.+++.+.++...
T Consensus 179 l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~al~~LekL~ 226 (585)
T PRK14950 179 HSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRDAENLLQQLA 226 (585)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 99999999999998888888899899999998886 7778777777643
No 168
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.40 E-value=4.1e-12 Score=113.68 Aligned_cols=137 Identities=15% Similarity=0.142 Sum_probs=91.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccccc--ccchHHH----------HHHHHHHHHHhcCCcEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSK--WYGEGEK----------MVRALFAVASVHQPSIIFIDEIDS 68 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~--~~~~~~~----------~l~~~~~~~~~~~p~vl~iDeid~ 68 (343)
|||.||||||||++++.+|+.++.+++.+++...... ..|...- .....+..+. ..+.+|++||+|.
T Consensus 67 ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlDEin~ 145 (327)
T TIGR01650 67 VMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFDEYDA 145 (327)
T ss_pred EEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEechhhc
Confidence 6899999999999999999999999999988654433 2222110 0111222332 4578899999997
Q ss_pred ccccCCCCchhHHHHHHHHHHHh-----h-ccCCC-CCCCcEEEEEecCCCc------------hhhHHHHhccceEEEE
Q psy4538 69 LLCQRSDQENETSRRLKTEFLIS-----L-DGAST-LDDDLVLVIGATNRPQ------------ELDEAARRRLVKRLYI 129 (343)
Q Consensus 69 l~~~~~~~~~~~~~~~~~~ll~~-----l-~~~~~-~~~~~v~vi~~tn~~~------------~l~~~l~~rf~~~i~~ 129 (343)
.-+ .....+..++.. + +.... .+...+.+|+|.|... .++++++.||..++.+
T Consensus 146 a~p--------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~ 217 (327)
T TIGR01650 146 GRP--------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTL 217 (327)
T ss_pred cCH--------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeC
Confidence 622 112222333331 1 01111 1334688999999854 4689999999988899
Q ss_pred cCCCHHHHHHHHHHHHh
Q psy4538 130 PLPDEQARCEIVTKLLR 146 (343)
Q Consensus 130 ~~P~~~er~~il~~~l~ 146 (343)
+.|+.++-.+|+.....
T Consensus 218 ~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 218 NYLEHDNEAAIVLAKAK 234 (327)
T ss_pred CCCCHHHHHHHHHhhcc
Confidence 99999999999887643
No 169
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.39 E-value=8.5e-13 Score=104.33 Aligned_cols=74 Identities=35% Similarity=0.588 Sum_probs=65.9
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHH-HhhhceEeccC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAAR-RRLVKRLYIPL 298 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~all-RR~d~~i~~~~ 298 (343)
.||||||||+|.++++.+........+++++|+.+|+..... +.+|++|++||.++.||++++ +||++.|+||+
T Consensus 58 ~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 58 KPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp TSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cceeeeeccchhcccccccccccccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 499999999999999996677888899999999999998862 345999999999999999999 69999999985
No 170
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.38 E-value=1e-11 Score=104.67 Aligned_cols=139 Identities=19% Similarity=0.235 Sum_probs=95.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc------------------------EEEEecccccccccchHHHHHHHHHHHHHh-
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT------------------------FFCISASTLTSKWYGEGEKMVRALFAVASV- 55 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~------------------------~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~- 55 (343)
+||+||+|+|||++++.+++.+... +..+.... .. .....++.+...+..
T Consensus 17 ~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~~~~~~ 91 (188)
T TIGR00678 17 YLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVEFLSRT 91 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHHHHccC
Confidence 4899999999999999999987432 22221111 00 112344444444432
Q ss_pred ---cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 56 ---HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 56 ---~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
....|++|||+|.+.. ...+.++..++.. .....+|.+++.+..+.+.+++|+. .+.+++|
T Consensus 92 ~~~~~~kviiide~~~l~~-----------~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~sr~~-~~~~~~~ 155 (188)
T TIGR00678 92 PQESGRRVVIIEDAERMNE-----------AAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRSRCQ-VLPFPPL 155 (188)
T ss_pred cccCCeEEEEEechhhhCH-----------HHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHhhcE-EeeCCCC
Confidence 3457999999998732 2345677777664 2345566667777899999999996 8999999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCC
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTD 166 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g 166 (343)
+.++..+++... ..+++.+..+++.+.|
T Consensus 156 ~~~~~~~~l~~~------gi~~~~~~~i~~~~~g 183 (188)
T TIGR00678 156 SEEALLQWLIRQ------GISEEAAELLLALAGG 183 (188)
T ss_pred CHHHHHHHHHHc------CCCHHHHHHHHHHcCC
Confidence 999998888765 2567788888888776
No 171
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.37 E-value=1.7e-11 Score=123.52 Aligned_cols=169 Identities=22% Similarity=0.246 Sum_probs=118.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccccc------------ccchHHHHHHHHHHHHHhcCCcEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSK------------WYGEGEKMVRALFAVASVHQPSIIFIDEIDS 68 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~------------~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~ 68 (343)
+||+||+|||||++|+++|+.++.+++.++++++... |.|... ...+....+....+|++|||+|.
T Consensus 487 ~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEiek 564 (731)
T TIGR02639 487 FLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEK 564 (731)
T ss_pred EEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccch--hhHHHHHHHhCCCeEEEEechhh
Confidence 4799999999999999999999999999998775431 122111 11223333445678999999997
Q ss_pred ccccCCCCchhHHHHHHHHHHHhhccCCC-------CCCCcEEEEEecCCCc-------------------------hhh
Q psy4538 69 LLCQRSDQENETSRRLKTEFLISLDGAST-------LDDDLVLVIGATNRPQ-------------------------ELD 116 (343)
Q Consensus 69 l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~v~vi~~tn~~~-------------------------~l~ 116 (343)
+. ....+.|+..++...- .+-.+.++|+|+|... .+.
T Consensus 565 a~-----------~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~ 633 (731)
T TIGR02639 565 AH-----------PDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFS 633 (731)
T ss_pred cC-----------HHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcC
Confidence 73 2345556666654321 1234567888886631 246
Q ss_pred HHHHhccceEEEEcCCCHHHHHHHHHHHHhhh---------CCCCChhhHHHHHHH--CCCCCHHHHHHHHHHHhcc
Q psy4538 117 EAARRRLVKRLYIPLPDEQARCEIVTKLLRNI---------TNSLTVDDIEEVGRM--TTDFSGADMASLCREASLG 182 (343)
Q Consensus 117 ~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~---------~~~~~~~~~~~la~~--t~g~s~~dl~~l~~~a~~~ 182 (343)
|.++.|++..+.|.+.+.++..+|++..+... ...++++.++.|++. ...+..+.|+.+++.....
T Consensus 634 pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~ 710 (731)
T TIGR02639 634 PEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKK 710 (731)
T ss_pred hHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHH
Confidence 77888999999999999999999998887641 234577788888875 4556778888877765433
No 172
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.36 E-value=2.8e-11 Score=107.91 Aligned_cols=190 Identities=15% Similarity=0.207 Sum_probs=115.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC-cEEEE---ecc----ccc----c----cccch-HHH---HHHHHH-HHHHhcCCc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA-TFFCI---SAS----TLT----S----KWYGE-GEK---MVRALF-AVASVHQPS 59 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~-~~~~v---~~~----~l~----~----~~~~~-~~~---~l~~~~-~~~~~~~p~ 59 (343)
++|+||+|+|||++++.+++++.. .+... ++. ++. . ...+. ... .+...+ .......+.
T Consensus 46 ~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 125 (269)
T TIGR03015 46 ILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKRA 125 (269)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCCe
Confidence 478999999999999999998862 22211 110 000 0 00011 111 111111 222345677
Q ss_pred EEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEec--CCCchh----hHHHHhccceEEEEcCCC
Q psy4538 60 IIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGAT--NRPQEL----DEAARRRLVKRLYIPLPD 133 (343)
Q Consensus 60 vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~t--n~~~~l----~~~l~~rf~~~i~~~~P~ 133 (343)
+|+|||++.+.. .....+. .+..........+.++.+. .....+ ...+.+|+...+++++.+
T Consensus 126 vliiDe~~~l~~--------~~~~~l~----~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~ 193 (269)
T TIGR03015 126 LLVVDEAQNLTP--------ELLEELR----MLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLD 193 (269)
T ss_pred EEEEECcccCCH--------HHHHHHH----HHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCC
Confidence 999999998731 1111122 2222111112222223222 211111 124666888889999999
Q ss_pred HHHHHHHHHHHHhhhC----CCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHH
Q psy4538 134 EQARCEIVTKLLRNIT----NSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDAL 209 (343)
Q Consensus 134 ~~er~~il~~~l~~~~----~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~ 209 (343)
.++..+++...++..+ ..++++.++.+.+.+.|. ++.|..+|..+...+..+ +...|+.+++..++
T Consensus 194 ~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~---------~~~~i~~~~v~~~~ 263 (269)
T TIGR03015 194 REETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLE---------EKREIGGEEVREVI 263 (269)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHc---------CCCCCCHHHHHHHH
Confidence 9999999998887543 357888999999999986 456999999987777654 45679999999988
Q ss_pred Hhc
Q psy4538 210 KTV 212 (343)
Q Consensus 210 ~~~ 212 (343)
..+
T Consensus 264 ~~~ 266 (269)
T TIGR03015 264 AEI 266 (269)
T ss_pred HHh
Confidence 765
No 173
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=4.3e-11 Score=117.35 Aligned_cols=158 Identities=16% Similarity=0.173 Sum_probs=114.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc-------------------------EEEEecccccccccchHHHHHHHHHHHHHh
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT-------------------------FFCISASTLTSKWYGEGEKMVRALFAVASV 55 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~-------------------------~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~ 55 (343)
+|||||+|+|||++|+.+|+.+.+. ++.+++.+. .....++.+...+..
T Consensus 42 yLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~ 115 (614)
T PRK14971 42 YLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRI 115 (614)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhh
Confidence 4899999999999999999988642 222222110 112345555544432
Q ss_pred ----cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcC
Q psy4538 56 ----HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPL 131 (343)
Q Consensus 56 ----~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~ 131 (343)
....|++|||+|.+. ....+.|+..++.. ....++|.+|+....+-+.+++|+. .++|.+
T Consensus 116 ~P~~~~~KVvIIdea~~Ls-----------~~a~naLLK~LEep----p~~tifIL~tt~~~kIl~tI~SRc~-iv~f~~ 179 (614)
T PRK14971 116 PPQIGKYKIYIIDEVHMLS-----------QAAFNAFLKTLEEP----PSYAIFILATTEKHKILPTILSRCQ-IFDFNR 179 (614)
T ss_pred CcccCCcEEEEEECcccCC-----------HHHHHHHHHHHhCC----CCCeEEEEEeCCchhchHHHHhhhh-eeecCC
Confidence 235699999999883 23456778877764 3345666666677889899999997 799999
Q ss_pred CCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhc
Q psy4538 132 PDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASL 181 (343)
Q Consensus 132 P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~ 181 (343)
++.++....++..+...+...+++.+..+++.+.| +.+++.+.+.....
T Consensus 180 ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dlr~al~~Lekl~~ 228 (614)
T PRK14971 180 IQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GMRDALSIFDQVVS 228 (614)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 99999999999999888888888889999998864 77777777666543
No 174
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.34 E-value=1.1e-11 Score=99.38 Aligned_cols=119 Identities=43% Similarity=0.623 Sum_probs=77.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchHHHH---HHHHHHHHHhcCCcEEEecccccccccCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEGEKM---VRALFAVASVHQPSIIFIDEIDSLLCQRS 74 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~~~~---l~~~~~~~~~~~p~vl~iDeid~l~~~~~ 74 (343)
++++||||+|||++++.+++.+ +.+++.+++.............. ............+.+|+|||++.+..
T Consensus 22 v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~--- 98 (151)
T cd00009 22 LLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR--- 98 (151)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH---
Confidence 5799999999999999999998 88899998877654432221111 11122233345688999999997611
Q ss_pred CCchhHHHHHHHHHHHhhccCCCC--CCCcEEEEEecCCCc--hhhHHHHhccceEEEEc
Q psy4538 75 DQENETSRRLKTEFLISLDGASTL--DDDLVLVIGATNRPQ--ELDEAARRRLVKRLYIP 130 (343)
Q Consensus 75 ~~~~~~~~~~~~~ll~~l~~~~~~--~~~~v~vi~~tn~~~--~l~~~l~~rf~~~i~~~ 130 (343)
.....+...+...... ....+.+|++++... .+++.+.+||...+.++
T Consensus 99 --------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 99 --------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred --------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 1122333333333211 134577788887766 78888889998677665
No 175
>KOG0991|consensus
Probab=99.31 E-value=1.8e-11 Score=102.15 Aligned_cols=155 Identities=21% Similarity=0.237 Sum_probs=109.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-C----CcEEEEecccccccccchHHHHHHHHHHHHHhc----CCcEEEecccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-K----ATFFCISASTLTSKWYGEGEKMVRALFAVASVH----QPSIIFIDEIDSLLC 71 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-~----~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~----~p~vl~iDeid~l~~ 71 (343)
+++.||||+||||.+..+|+++ | --++++|+++-.+- ...+.--+.|.+-+.. ...|++|||+|++-
T Consensus 51 liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGI---DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT- 126 (333)
T KOG0991|consen 51 LIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGI---DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT- 126 (333)
T ss_pred eEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccccc---HHHHHHHHHHHHhhccCCCCceeEEEeeccchhh-
Confidence 5789999999999999999987 3 24678888776543 2222223344444332 33599999999883
Q ss_pred cCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhCCC
Q psy4538 72 QRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNITNS 151 (343)
Q Consensus 72 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~ 151 (343)
....+.+-+.|+-.+. ...+..++|....+-+.+.+|+. .+.+...+.++...-+....+.....
T Consensus 127 ----------~gAQQAlRRtMEiyS~----ttRFalaCN~s~KIiEPIQSRCA-iLRysklsd~qiL~Rl~~v~k~Ekv~ 191 (333)
T KOG0991|consen 127 ----------AGAQQALRRTMEIYSN----TTRFALACNQSEKIIEPIQSRCA-ILRYSKLSDQQILKRLLEVAKAEKVN 191 (333)
T ss_pred ----------hHHHHHHHHHHHHHcc----cchhhhhhcchhhhhhhHHhhhH-hhhhcccCHHHHHHHHHHHHHHhCCC
Confidence 2233344455554432 23466678999999999999997 67777788888777777777878888
Q ss_pred CChhhHHHHHHHCCCCCHHHHHHHHHH
Q psy4538 152 LTVDDIEEVGRMTTDFSGADMASLCRE 178 (343)
Q Consensus 152 ~~~~~~~~la~~t~g~s~~dl~~l~~~ 178 (343)
++++.++.+.....| |+++.++.
T Consensus 192 yt~dgLeaiifta~G----DMRQalNn 214 (333)
T KOG0991|consen 192 YTDDGLEAIIFTAQG----DMRQALNN 214 (333)
T ss_pred CCcchHHHhhhhccc----hHHHHHHH
Confidence 889899998887775 66665554
No 176
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.30 E-value=1.4e-10 Score=102.67 Aligned_cols=89 Identities=17% Similarity=0.144 Sum_probs=74.7
Q ss_pred CchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhccccccccccc
Q psy4538 112 PQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSR 191 (343)
Q Consensus 112 ~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~ 191 (343)
|.-++..++.|.- .|...+++.++.++|++..++.....++++.++.|+.....-|.+...+|+.-|...|.++
T Consensus 342 PhGIP~DlLDRll-II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r----- 415 (450)
T COG1224 342 PHGIPLDLLDRLL-IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR----- 415 (450)
T ss_pred CCCCCHhhhhhee-EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh-----
Confidence 6678888998885 7888899999999999999999989999999999999888777888888887777767665
Q ss_pred ccccCCcccChhHHHHHHH
Q psy4538 192 IDALDVRPISIDDFRDALK 210 (343)
Q Consensus 192 ~~~~~~~~i~~~d~~~a~~ 210 (343)
+...+..+|+.++..
T Consensus 416 ----g~~~V~~~dVe~a~~ 430 (450)
T COG1224 416 ----GSKRVEVEDVERAKE 430 (450)
T ss_pred ----CCCeeehhHHHHHHH
Confidence 456688888888765
No 177
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.29 E-value=7.7e-11 Score=103.68 Aligned_cols=195 Identities=16% Similarity=0.218 Sum_probs=120.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC---------CcEEEEecccccc--------------cc--cchHHHHHHHHHHHHHh
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK---------ATFFCISASTLTS--------------KW--YGEGEKMVRALFAVASV 55 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~---------~~~~~v~~~~l~~--------------~~--~~~~~~~l~~~~~~~~~ 55 (343)
+||+|++|+|||++++.++.... .|++.+.+..-.+ .+ .......-.++....+.
T Consensus 64 lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~ 143 (302)
T PF05621_consen 64 LLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRR 143 (302)
T ss_pred eEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999998652 4566665432111 00 01122223344455566
Q ss_pred cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCc--hhhHHHHhccceEEEEcCCC
Q psy4538 56 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ--ELDEAARRRLVKRLYIPLPD 133 (343)
Q Consensus 56 ~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~--~l~~~l~~rf~~~i~~~~P~ 133 (343)
.++.+|+|||++.++... .+....+++.+..+...-.-+++.+|+..... .-|+.+.+||. .+.+|...
T Consensus 144 ~~vrmLIIDE~H~lLaGs--------~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~-~~~Lp~W~ 214 (302)
T PF05621_consen 144 LGVRMLIIDEFHNLLAGS--------YRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFE-PFELPRWE 214 (302)
T ss_pred cCCcEEEeechHHHhccc--------HHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccC-CccCCCCC
Confidence 778999999999986432 22334455555555443455667777653332 44688889998 56666654
Q ss_pred H-HHHHHHHHHHHhhhCC----CC-ChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHH
Q psy4538 134 E-QARCEIVTKLLRNITN----SL-TVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRD 207 (343)
Q Consensus 134 ~-~er~~il~~~l~~~~~----~~-~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~ 207 (343)
. ++-..++..+-...+. .+ +.+....+-..+.|.. +++..+++.|+..|++. +...|+.+.+..
T Consensus 215 ~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i-G~l~~ll~~aA~~AI~s---------G~E~It~~~l~~ 284 (302)
T PF05621_consen 215 LDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI-GELSRLLNAAAIAAIRS---------GEERITREILDK 284 (302)
T ss_pred CCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHhc---------CCceecHHHHhh
Confidence 4 3334555555443321 22 3444567777888755 59999999999999877 566677666544
Q ss_pred HHHhcCCC
Q psy4538 208 ALKTVRPS 215 (343)
Q Consensus 208 a~~~~~ps 215 (343)
+..+.|+
T Consensus 285 -~~~~~ps 291 (302)
T PF05621_consen 285 -IDWVPPS 291 (302)
T ss_pred -CCCcChh
Confidence 3333343
No 178
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.26 E-value=1.6e-10 Score=105.13 Aligned_cols=143 Identities=19% Similarity=0.284 Sum_probs=98.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc------------------------EEEEecccccccccchHHHHHHHHHHHHH--
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT------------------------FFCISASTLTSKWYGEGEKMVRALFAVAS-- 54 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~------------------------~~~v~~~~l~~~~~~~~~~~l~~~~~~~~-- 54 (343)
+||+||+|+||+++|+++|+.+.+. ++.+.+..- ++ .-.-..++.+...+.
T Consensus 25 ~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~~~~~~ 101 (328)
T PRK05707 25 YLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVSFVVQT 101 (328)
T ss_pred eeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHHHHhhc
Confidence 4899999999999999999988542 222222110 00 012234555544432
Q ss_pred --hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 55 --VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 55 --~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
.....|++||++|.+- ....+.++..++.. ...+++|.+|+.+..+.+.++||+. .+.|++|
T Consensus 102 ~~~~~~kv~iI~~a~~m~-----------~~aaNaLLK~LEEP----p~~~~fiL~t~~~~~ll~TI~SRc~-~~~~~~~ 165 (328)
T PRK05707 102 AQLGGRKVVLIEPAEAMN-----------RNAANALLKSLEEP----SGDTVLLLISHQPSRLLPTIKSRCQ-QQACPLP 165 (328)
T ss_pred cccCCCeEEEECChhhCC-----------HHHHHHHHHHHhCC----CCCeEEEEEECChhhCcHHHHhhce-eeeCCCc
Confidence 2346799999999883 35567788888874 4567888899999999999999998 6999999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCC
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTD 166 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g 166 (343)
+.++..+.+..... ..+++....++..+.|
T Consensus 166 ~~~~~~~~L~~~~~----~~~~~~~~~~l~la~G 195 (328)
T PRK05707 166 SNEESLQWLQQALP----ESDERERIELLTLAGG 195 (328)
T ss_pred CHHHHHHHHHHhcc----cCChHHHHHHHHHcCC
Confidence 99988877765431 2334455666666665
No 179
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.26 E-value=5e-11 Score=108.21 Aligned_cols=77 Identities=17% Similarity=0.271 Sum_probs=55.9
Q ss_pred CcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCC---------CCCCCcEEEEEecCCCc-hhhHHHHhccceEE
Q psy4538 58 PSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAS---------TLDDDLVLVIGATNRPQ-ELDEAARRRLVKRL 127 (343)
Q Consensus 58 p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~v~vi~~tn~~~-~l~~~l~~rf~~~i 127 (343)
..+||+||++.+- ...+..++..|+... .....++++++++|..+ .+++++..||...+
T Consensus 129 ~GiL~lDEInrl~-----------~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v 197 (334)
T PRK13407 129 RGYLYIDEVNLLE-----------DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSV 197 (334)
T ss_pred CCeEEecChHhCC-----------HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEE
Confidence 4699999999873 344455555554322 11245688888888754 68999999999999
Q ss_pred EEcCCCH-HHHHHHHHHHH
Q psy4538 128 YIPLPDE-QARCEIVTKLL 145 (343)
Q Consensus 128 ~~~~P~~-~er~~il~~~l 145 (343)
.+++|.. ++|.+++....
T Consensus 198 ~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 198 EVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred EcCCCCcHHHHHHHHHHhh
Confidence 9998877 88889988643
No 180
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.25 E-value=4.4e-10 Score=94.50 Aligned_cols=160 Identities=19% Similarity=0.244 Sum_probs=114.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchHHHHHHHHHHHHHh-cCCcEEEecccccccccCCCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEGEKMVRALFAVASV-HQPSIIFIDEIDSLLCQRSDQ 76 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~-~~p~vl~iDeid~l~~~~~~~ 76 (343)
|||+|..|||||+++|++-++. |..+++|+-.++.. +-.++...+. ...-|||+|++--
T Consensus 88 VLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF-------- 150 (287)
T COG2607 88 VLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLAT---------LPDLVELLRARPEKFILFCDDLSF-------- 150 (287)
T ss_pred eEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhh---------HHHHHHHHhcCCceEEEEecCCCC--------
Confidence 6999999999999999998887 56788888777643 2333444332 3456888898741
Q ss_pred chhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhH----------------------HHHhccceEEEEcCCCH
Q psy4538 77 ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDE----------------------AARRRLVKRLYIPLPDE 134 (343)
Q Consensus 77 ~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~----------------------~l~~rf~~~i~~~~P~~ 134 (343)
+......+.+-..+++.......+|++.+|+|+...+++ ++-.||..++.|+++++
T Consensus 151 --e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q 228 (287)
T COG2607 151 --EEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQ 228 (287)
T ss_pred --CCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCH
Confidence 111223344555667666656778999999988665442 23349999999999999
Q ss_pred HHHHHHHHHHHhhhCCCCChhhHHH----HHHHCCCCCHHHHHHHHHHH
Q psy4538 135 QARCEIVTKLLRNITNSLTVDDIEE----VGRMTTDFSGADMASLCREA 179 (343)
Q Consensus 135 ~er~~il~~~l~~~~~~~~~~~~~~----la~~t~g~s~~dl~~l~~~a 179 (343)
++-.+++.+++++.+...+++.+.. .|..-.|-|++-..+.++..
T Consensus 229 ~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSGR~A~QF~~~~ 277 (287)
T COG2607 229 DEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRSGRVAWQFIRDL 277 (287)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCccHhHHHHHHHH
Confidence 9999999999999988887765544 33345667777776666543
No 181
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.25 E-value=2.2e-10 Score=117.20 Aligned_cols=170 Identities=19% Similarity=0.214 Sum_probs=115.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccc------------cchHHHHHHHHHHHHHhcCCcEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKW------------YGEGEKMVRALFAVASVHQPSIIFIDE 65 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~------------~~~~~~~l~~~~~~~~~~~p~vl~iDe 65 (343)
+||+||+|||||++|+++|+.+ +.+++.++++.+.... .|..+ -..+....+....+||+|||
T Consensus 598 ~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDe 675 (852)
T TIGR03346 598 FLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDE 675 (852)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEec
Confidence 4799999999999999999987 4688889887654321 11111 11222333334567999999
Q ss_pred cccccccCCCCchhHHHHHHHHHHHhhccCCC-------CCCCcEEEEEecCCCch------------------------
Q psy4538 66 IDSLLCQRSDQENETSRRLKTEFLISLDGAST-------LDDDLVLVIGATNRPQE------------------------ 114 (343)
Q Consensus 66 id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~v~vi~~tn~~~~------------------------ 114 (343)
++.+- ..+.+.|+..++...- .+-.+.+||+|||....
T Consensus 676 ieka~-----------~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (852)
T TIGR03346 676 VEKAH-----------PDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRA 744 (852)
T ss_pred cccCC-----------HHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHh
Confidence 99762 3445556666643321 11245678888877221
Q ss_pred -hhHHHHhccceEEEEcCCCHHHHHHHHHHHHhh---------hCCCCChhhHHHHHHHCC--CCCHHHHHHHHHHHhcc
Q psy4538 115 -LDEAARRRLVKRLYIPLPDEQARCEIVTKLLRN---------ITNSLTVDDIEEVGRMTT--DFSGADMASLCREASLG 182 (343)
Q Consensus 115 -l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~---------~~~~~~~~~~~~la~~t~--g~s~~dl~~l~~~a~~~ 182 (343)
+.|.|..|++..+.|.+++.++..+|+...+.. ....++++.++.|++... .+..+.|+++++.....
T Consensus 745 ~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~ 824 (852)
T TIGR03346 745 HFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIEN 824 (852)
T ss_pred hcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHH
Confidence 235677799989999999999999998866642 124568888888988743 67888898888776543
Q ss_pred c
Q psy4538 183 P 183 (343)
Q Consensus 183 a 183 (343)
.
T Consensus 825 ~ 825 (852)
T TIGR03346 825 P 825 (852)
T ss_pred H
Confidence 3
No 182
>KOG2035|consensus
Probab=99.25 E-value=6e-10 Score=95.48 Aligned_cols=145 Identities=19% Similarity=0.352 Sum_probs=108.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-C--Cc--------------------------EEEEecccccccccch-HHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-K--AT--------------------------FFCISASTLTSKWYGE-GEKMVRALF 50 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-~--~~--------------------------~~~v~~~~l~~~~~~~-~~~~l~~~~ 50 (343)
+++|||+|+||-|.+.++.+++ | .+ .+++++++. |. ..-.++.++
T Consensus 37 ll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDa-----G~~DRvViQell 111 (351)
T KOG2035|consen 37 LLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDA-----GNYDRVVIQELL 111 (351)
T ss_pred EEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhc-----CcccHHHHHHHH
Confidence 4899999999999999999887 2 11 112222221 21 222344555
Q ss_pred HHHHhcC---------CcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh
Q psy4538 51 AVASVHQ---------PSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR 121 (343)
Q Consensus 51 ~~~~~~~---------p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~ 121 (343)
.+....+ -.+++|-|+|.| ..+.+..+-+.|+.... .+-+|..+|....+-+++++
T Consensus 112 KevAQt~qie~~~qr~fKvvvi~ead~L-----------T~dAQ~aLRRTMEkYs~----~~RlIl~cns~SriIepIrS 176 (351)
T KOG2035|consen 112 KEVAQTQQIETQGQRPFKVVVINEADEL-----------TRDAQHALRRTMEKYSS----NCRLILVCNSTSRIIEPIRS 176 (351)
T ss_pred HHHHhhcchhhccccceEEEEEechHhh-----------hHHHHHHHHHHHHHHhc----CceEEEEecCcccchhHHhh
Confidence 4443322 359999999987 34556667777877643 45677789999999999999
Q ss_pred ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCC
Q psy4538 122 RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTD 166 (343)
Q Consensus 122 rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g 166 (343)
|+- .+.+|.|+.++...++...+++.+..++.+.+..+++.+.|
T Consensus 177 RCl-~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 177 RCL-FIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNR 220 (351)
T ss_pred hee-EEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcc
Confidence 986 89999999999999999999999999999999999998875
No 183
>KOG0743|consensus
Probab=99.23 E-value=1.1e-11 Score=113.21 Aligned_cols=110 Identities=22% Similarity=0.262 Sum_probs=89.5
Q ss_pred CcceEeecchhhhhcccCCCcc-------hhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceE
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQEN-------ETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRL 294 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~-------~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i 294 (343)
.-+||++..||+-+-.|+.... ....-.+|.||+.+||+-++.++--|+|.|||+++.|||||+| |.|.+|
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI 365 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHI 365 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEE
Confidence 4689999999977654432211 1234679999999999987776667999999999999999999 999999
Q ss_pred eccCCCCC--------------CCCCCchhHHHHhhhhhhhhhhcHHHHHhhc
Q psy4538 295 YIPLPDEQ--------------KVPGSNPTMDKIDQENETSRRLKTEFLISLD 333 (343)
Q Consensus 295 ~~~~P~~~--------------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (343)
|+++.+.+ ..++..++.+.+++...+|++++-++|...+
T Consensus 366 ~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~ 418 (457)
T KOG0743|consen 366 YMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQVAEELMKNKN 418 (457)
T ss_pred EcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCccCHHHHHHHHhhccc
Confidence 99987763 3778888888888888899999998888763
No 184
>PHA02244 ATPase-like protein
Probab=99.23 E-value=8.5e-11 Score=106.44 Aligned_cols=123 Identities=20% Similarity=0.247 Sum_probs=76.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccch--HHHHHH-HHHHHHHhcCCcEEEecccccccccCCCCc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGE--GEKMVR-ALFAVASVHQPSIIFIDEIDSLLCQRSDQE 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~--~~~~l~-~~~~~~~~~~p~vl~iDeid~l~~~~~~~~ 77 (343)
|||+||||||||++|+++|..++.+++.++...-.....|. ....+. .-+-.+. ..+.+|+|||++.+.+
T Consensus 122 VLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p------ 194 (383)
T PHA02244 122 VFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDASIP------ 194 (383)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcCCH------
Confidence 68999999999999999999999999998843110000000 000111 1122222 4578999999997632
Q ss_pred hhHHHHHHHHHHHhhccC-------CCCCCCcEEEEEecCCC-----------chhhHHHHhccceEEEEcCCCHHH
Q psy4538 78 NETSRRLKTEFLISLDGA-------STLDDDLVLVIGATNRP-----------QELDEAARRRLVKRLYIPLPDEQA 136 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~-------~~~~~~~v~vi~~tn~~-----------~~l~~~l~~rf~~~i~~~~P~~~e 136 (343)
.....+...++.. .......+.+|+|+|.+ ..+++++++||. .++++.|+..|
T Consensus 195 -----~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv-~I~~dyp~~~E 265 (383)
T PHA02244 195 -----EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFA-PIEFDYDEKIE 265 (383)
T ss_pred -----HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcE-EeeCCCCcHHH
Confidence 1222222222210 11123467889999873 577999999996 79999998433
No 185
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=5e-10 Score=102.76 Aligned_cols=159 Identities=16% Similarity=0.108 Sum_probs=101.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc-------EEEE-ec---c-----------ccc--ccc--c-------chHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT-------FFCI-SA---S-----------TLT--SKW--Y-------GEGEKMVR 47 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~-------~~~v-~~---~-----------~l~--~~~--~-------~~~~~~l~ 47 (343)
+||+||+|+|||++|+.+|+.+.+. .... .| . ++. ... . .-....++
T Consensus 48 ~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR 127 (351)
T PRK09112 48 LLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR 127 (351)
T ss_pred EeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHH
Confidence 4899999999999999999988551 1000 00 0 000 000 0 00112233
Q ss_pred HHHHHH----HhcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhcc
Q psy4538 48 ALFAVA----SVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRL 123 (343)
Q Consensus 48 ~~~~~~----~~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf 123 (343)
.+.... ......|++|||+|.+- ....+.++..++.. ..+.++|..++.+..+.+.+++|+
T Consensus 128 ~l~~~l~~~~~~g~~rVviIDeAd~l~-----------~~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrSRc 192 (351)
T PRK09112 128 RVGHFLSQTSGDGNWRIVIIDPADDMN-----------RNAANAILKTLEEP----PARALFILISHSSGRLLPTIRSRC 192 (351)
T ss_pred HHHHHhhhccccCCceEEEEEchhhcC-----------HHHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHhhc
Confidence 333222 22346799999999882 23345688888764 234455556777888889999999
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHH
Q psy4538 124 VKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCRE 178 (343)
Q Consensus 124 ~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~ 178 (343)
. .+.+++|+.++..+++....... ..++..+..+++.+.| +++...+++..
T Consensus 193 ~-~i~l~pl~~~~~~~~L~~~~~~~--~~~~~~~~~i~~~s~G-~pr~Al~ll~~ 243 (351)
T PRK09112 193 Q-PISLKPLDDDELKKALSHLGSSQ--GSDGEITEALLQRSKG-SVRKALLLLNY 243 (351)
T ss_pred c-EEEecCCCHHHHHHHHHHhhccc--CCCHHHHHHHHHHcCC-CHHHHHHHHhc
Confidence 5 99999999999999998743322 2556677788887775 55555555543
No 186
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.21 E-value=3.8e-10 Score=115.05 Aligned_cols=168 Identities=18% Similarity=0.205 Sum_probs=109.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccc------------cchHHHHHHHHHHHHHhcCCcEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKW------------YGEGEKMVRALFAVASVHQPSIIFIDE 65 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~------------~~~~~~~l~~~~~~~~~~~p~vl~iDe 65 (343)
+||+||+|||||++|+++++.+ +.+++.++++.+.... .|.... ..+....+....++|+|||
T Consensus 601 ~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~--g~l~~~v~~~p~~vLllDE 678 (857)
T PRK10865 601 FLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEG--GYLTEAVRRRPYSVILLDE 678 (857)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchh--HHHHHHHHhCCCCeEEEee
Confidence 4799999999999999999987 4578888887764321 111110 1111222333458999999
Q ss_pred cccccccCCCCchhHHHHHHHHHHHhhccCCC-------CCCCcEEEEEecCCCc-------------------------
Q psy4538 66 IDSLLCQRSDQENETSRRLKTEFLISLDGAST-------LDDDLVLVIGATNRPQ------------------------- 113 (343)
Q Consensus 66 id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~v~vi~~tn~~~------------------------- 113 (343)
++.+- ....+.++..++...- ..-.+.++|.|||...
T Consensus 679 ieka~-----------~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (857)
T PRK10865 679 VEKAH-----------PDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSH 747 (857)
T ss_pred hhhCC-----------HHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcc
Confidence 99762 2344555555543211 1123456788887631
Q ss_pred hhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhh---------CCCCChhhHHHHHHHC--CCCCHHHHHHHHHHHhc
Q psy4538 114 ELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNI---------TNSLTVDDIEEVGRMT--TDFSGADMASLCREASL 181 (343)
Q Consensus 114 ~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~---------~~~~~~~~~~~la~~t--~g~s~~dl~~l~~~a~~ 181 (343)
.+.|+|..|++..+.|.+++.+...+|++..+... ...++++.++.|++.. ..+..+.|+++++.-..
T Consensus 748 ~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~ 826 (857)
T PRK10865 748 NFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIE 826 (857)
T ss_pred cccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHH
Confidence 23467888999899999999999999988777542 2346777888888753 23456778877766543
No 187
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.21 E-value=2.5e-10 Score=116.10 Aligned_cols=166 Identities=19% Similarity=0.224 Sum_probs=111.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccccccc------------ccchHHHHHHHHHHHHHhcCCcEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSK------------WYGEGEKMVRALFAVASVHQPSIIFIDE 65 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~------------~~~~~~~~l~~~~~~~~~~~p~vl~iDe 65 (343)
+||+||+|+|||.+|+++|+.+ +..++.++++++... |.|..+. ..+....+.+.++||+|||
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDE 676 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDE 676 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEec
Confidence 4899999999999999999998 457888888765321 2332211 1122333446679999999
Q ss_pred cccccccCCCCchhHHHHHHHHHHHhhccCCCC-------CCCcEEEEEecCCCc-------------------------
Q psy4538 66 IDSLLCQRSDQENETSRRLKTEFLISLDGASTL-------DDDLVLVIGATNRPQ------------------------- 113 (343)
Q Consensus 66 id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~v~vi~~tn~~~------------------------- 113 (343)
+|..- ....+.|+..++...-. +-.+.++|.|||...
T Consensus 677 ieka~-----------~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (852)
T TIGR03345 677 VEKAH-----------PDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRP 745 (852)
T ss_pred hhhcC-----------HHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHH
Confidence 99652 23344555555433211 124577888877421
Q ss_pred ----hhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhh--------C--CCCChhhHHHHHHHCCC--CCHHHHHHHHH
Q psy4538 114 ----ELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNI--------T--NSLTVDDIEEVGRMTTD--FSGADMASLCR 177 (343)
Q Consensus 114 ----~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~--------~--~~~~~~~~~~la~~t~g--~s~~dl~~l~~ 177 (343)
.+.|++++|++ .|.|.+.+.++..+|+...+... + ..++++.++.|++...+ +-.+.++++++
T Consensus 746 ~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie 824 (852)
T TIGR03345 746 ELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILN 824 (852)
T ss_pred HHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHH
Confidence 14467778886 78999999999999988766441 2 34678888899987754 56788888776
Q ss_pred HHh
Q psy4538 178 EAS 180 (343)
Q Consensus 178 ~a~ 180 (343)
.-.
T Consensus 825 ~~i 827 (852)
T TIGR03345 825 QTL 827 (852)
T ss_pred HHH
Confidence 643
No 188
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.19 E-value=5.5e-11 Score=95.05 Aligned_cols=111 Identities=25% Similarity=0.336 Sum_probs=67.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccc------ccccch--HHHHHHHHHHHHHhcCCcEEEeccccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLT------SKWYGE--GEKMVRALFAVASVHQPSIIFIDEIDSLLCQ 72 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~------~~~~~~--~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~ 72 (343)
|+|+||||||||++++.+|+.++.+++.++++... ..+.-. ........+..+ ...+++++|||++..-
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a-~~~~~il~lDEin~a~-- 78 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRA-MRKGGILVLDEINRAP-- 78 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTT-HHEEEEEEESSCGG----
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccc-ccceeEEEECCcccCC--
Confidence 68999999999999999999999999998886532 111100 000000000000 1257899999999652
Q ss_pred CCCCchhHHHHHHHHHHHhhccCCCC---------CCC------cEEEEEecCCCc----hhhHHHHhcc
Q psy4538 73 RSDQENETSRRLKTEFLISLDGASTL---------DDD------LVLVIGATNRPQ----ELDEAARRRL 123 (343)
Q Consensus 73 ~~~~~~~~~~~~~~~ll~~l~~~~~~---------~~~------~v~vi~~tn~~~----~l~~~l~~rf 123 (343)
..++..++..++..... ... .+.+|+|+|... .+++++++||
T Consensus 79 ---------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 79 ---------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp ---------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ---------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 33444444444422110 011 389999999988 8999999997
No 189
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.19 E-value=4.5e-10 Score=114.57 Aligned_cols=166 Identities=19% Similarity=0.204 Sum_probs=110.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccccccc------------ccchHHHHHHHHHHHHHhcCCcEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSK------------WYGEGEKMVRALFAVASVHQPSIIFIDE 65 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~------------~~~~~~~~l~~~~~~~~~~~p~vl~iDe 65 (343)
+||+||+|+|||++|+++|+.+ +.+++.++++++... |.|..+ ...+....+....+|++|||
T Consensus 542 ~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDe 619 (821)
T CHL00095 542 FLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDE 619 (821)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECC
Confidence 4799999999999999999987 467888888765321 122111 11233334444458999999
Q ss_pred cccccccCCCCchhHHHHHHHHHHHhhccCCC-------CCCCcEEEEEecCCCch------------------------
Q psy4538 66 IDSLLCQRSDQENETSRRLKTEFLISLDGAST-------LDDDLVLVIGATNRPQE------------------------ 114 (343)
Q Consensus 66 id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~v~vi~~tn~~~~------------------------ 114 (343)
+|.+- ..+.+.|+..++...- .+-.+.++|.|+|....
T Consensus 620 ieka~-----------~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~ 688 (821)
T CHL00095 620 IEKAH-----------PDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYK 688 (821)
T ss_pred hhhCC-----------HHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHH
Confidence 99773 3445566666664221 12346778888764211
Q ss_pred -------------hhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhh---------CCCCChhhHHHHHHH--CCCCCHH
Q psy4538 115 -------------LDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNI---------TNSLTVDDIEEVGRM--TTDFSGA 170 (343)
Q Consensus 115 -------------l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~---------~~~~~~~~~~~la~~--t~g~s~~ 170 (343)
+.|.|.+|++..|.|.+.+.++..+|+...+... ...++++..+.|++. ...+-.+
T Consensus 689 ~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR 768 (821)
T CHL00095 689 RLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGAR 768 (821)
T ss_pred HHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChh
Confidence 2356788998899999999999999988777542 234577778888875 3345567
Q ss_pred HHHHHHHHH
Q psy4538 171 DMASLCREA 179 (343)
Q Consensus 171 dl~~l~~~a 179 (343)
.|+.+++.-
T Consensus 769 ~l~r~i~~~ 777 (821)
T CHL00095 769 PLRRAIMRL 777 (821)
T ss_pred hHHHHHHHH
Confidence 777766554
No 190
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.18 E-value=1.4e-10 Score=106.13 Aligned_cols=123 Identities=25% Similarity=0.315 Sum_probs=89.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC------------------------CcEEEEecccccccccchHHHHHHHHHHHHHh-
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK------------------------ATFFCISASTLTSKWYGEGEKMVRALFAVASV- 55 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~------------------------~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~- 55 (343)
+||+||||+|||++|.++|+++. ..++++++++..... .....++.+......
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~ 104 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSES 104 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhccC
Confidence 58999999999999999999986 467888887765531 123334444443322
Q ss_pred ---cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 56 ---HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 56 ---~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
....|++|||+|.+- ....+.++..++.. .....+|.+||.++.+-+.+++|+. .+.|++|
T Consensus 105 ~~~~~~kviiidead~mt-----------~~A~nallk~lEep----~~~~~~il~~n~~~~il~tI~SRc~-~i~f~~~ 168 (325)
T COG0470 105 PLEGGYKVVIIDEADKLT-----------EDAANALLKTLEEP----PKNTRFILITNDPSKILPTIRSRCQ-RIRFKPP 168 (325)
T ss_pred CCCCCceEEEeCcHHHHh-----------HHHHHHHHHHhccC----CCCeEEEEEcCChhhccchhhhcce-eeecCCc
Confidence 345799999999873 35566777777765 4456788889999999999999997 7888776
Q ss_pred CHHHHHHHH
Q psy4538 133 DEQARCEIV 141 (343)
Q Consensus 133 ~~~er~~il 141 (343)
+........
T Consensus 169 ~~~~~i~~~ 177 (325)
T COG0470 169 SRLEAIAWL 177 (325)
T ss_pred hHHHHHHHh
Confidence 555544433
No 191
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.18 E-value=9.9e-11 Score=93.00 Aligned_cols=125 Identities=28% Similarity=0.403 Sum_probs=76.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc---EEEEecccccccc--------------cchHHHHHHHHHHHHHhcCCcEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT---FFCISASTLTSKW--------------YGEGEKMVRALFAVASVHQPSIIFI 63 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~---~~~v~~~~l~~~~--------------~~~~~~~l~~~~~~~~~~~p~vl~i 63 (343)
++|+||||||||++++.+|..++.. ++.+++....... ...........+..+....+.++++
T Consensus 5 ~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viii 84 (148)
T smart00382 5 ILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLIL 84 (148)
T ss_pred EEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5799999999999999999999775 7888776543321 1234455667777777666799999
Q ss_pred cccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCC-CchhhHHHHhccceEEEEcCC
Q psy4538 64 DEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNR-PQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 64 Deid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~-~~~l~~~l~~rf~~~i~~~~P 132 (343)
||++.+.............. ....... .......+|+++|. ....+..+..|++..+.++.+
T Consensus 85 Dei~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 85 DEITSLLDAEQEALLLLLEE--LRLLLLL-----KSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred ECCcccCCHHHHHHHHhhhh--hHHHHHH-----HhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 99998854321100000000 0000011 01334577777775 344455555577777766544
No 192
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.16 E-value=1.7e-10 Score=105.81 Aligned_cols=133 Identities=25% Similarity=0.380 Sum_probs=85.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccccc--ccchHHHHHH----HHHHHH--HhcCC--cEEEeccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSK--WYGEGEKMVR----ALFAVA--SVHQP--SIIFIDEIDSLL 70 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~--~~~~~~~~l~----~~~~~~--~~~~p--~vl~iDeid~l~ 70 (343)
+||-||||+|||++|+.+|..++.+++.+.|...... ..|...-... ..+... ..... +++++|||+...
T Consensus 46 vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~ 125 (329)
T COG0714 46 VLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAP 125 (329)
T ss_pred EEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCC
Confidence 5899999999999999999999999999998754322 1111111100 000000 00011 499999999763
Q ss_pred ccCCCCchhHHHHHHHHHHHhhcc-------CC-CCCCCcEEEEEecC-----CCchhhHHHHhccceEEEEcCC-CHHH
Q psy4538 71 CQRSDQENETSRRLKTEFLISLDG-------AS-TLDDDLVLVIGATN-----RPQELDEAARRRLVKRLYIPLP-DEQA 136 (343)
Q Consensus 71 ~~~~~~~~~~~~~~~~~ll~~l~~-------~~-~~~~~~v~vi~~tn-----~~~~l~~~l~~rf~~~i~~~~P-~~~e 136 (343)
....+.++..|+. .. ..-..++++++|.| ....+++++++||...+.++.| ...+
T Consensus 126 -----------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e 194 (329)
T COG0714 126 -----------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEE 194 (329)
T ss_pred -----------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHH
Confidence 3444555555553 11 22245678888888 4567899999999889999999 4444
Q ss_pred HHHHHHHH
Q psy4538 137 RCEIVTKL 144 (343)
Q Consensus 137 r~~il~~~ 144 (343)
...+....
T Consensus 195 ~~~i~~~~ 202 (329)
T COG0714 195 ERIILARV 202 (329)
T ss_pred HHHHHHhC
Confidence 54444433
No 193
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.16 E-value=7.5e-10 Score=101.09 Aligned_cols=165 Identities=16% Similarity=0.197 Sum_probs=105.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchHHHHH---------------HHHHHHHHhcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEGEKMV---------------RALFAVASVHQPSIIF 62 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~~~~l---------------~~~~~~~~~~~p~vl~ 62 (343)
|||+|++||||+++|+++-... +.+|+.++|..+..... +..+ ...|.. ..++.||
T Consensus 25 VLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l---~~~lfG~~~g~~~ga~~~~~G~~~~---a~gGtL~ 98 (329)
T TIGR02974 25 VLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLL---DSELFGHEAGAFTGAQKRHQGRFER---ADGGTLF 98 (329)
T ss_pred EEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHH---HHHHhccccccccCcccccCCchhh---CCCCEEE
Confidence 6899999999999999997655 47999999987643211 1110 011222 2467999
Q ss_pred ecccccccccCCCCchhHHHHHHHHHHHhhccCC-------CCCCCcEEEEEecCCC-------chhhHHHHhccceEEE
Q psy4538 63 IDEIDSLLCQRSDQENETSRRLKTEFLISLDGAS-------TLDDDLVLVIGATNRP-------QELDEAARRRLVKRLY 128 (343)
Q Consensus 63 iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~~v~vi~~tn~~-------~~l~~~l~~rf~~~i~ 128 (343)
|||++.|. ...+..++..++... ......+.+|++|+.. ..+.+.+..|+. .+.
T Consensus 99 Ldei~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~-~~~ 166 (329)
T TIGR02974 99 LDELATAS-----------LLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLA-FDV 166 (329)
T ss_pred eCChHhCC-----------HHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhc-chh
Confidence 99999883 233444555554322 1112457788888653 234566666775 334
Q ss_pred EcCCCHHHH----HHHHHHHHhh----hC----CCCChhhHHHHHHHCCCCCHHHHHHHHHHHhccc
Q psy4538 129 IPLPDEQAR----CEIVTKLLRN----IT----NSLTVDDIEEVGRMTTDFSGADMASLCREASLGP 183 (343)
Q Consensus 129 ~~~P~~~er----~~il~~~l~~----~~----~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a 183 (343)
+..|...+| ..++++++.. ++ ..++++.+..|..+..-.+.++|++++..++..+
T Consensus 167 i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 167 ITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred cCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 444444444 3444554432 22 3578889999999887789999999999887655
No 194
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.16 E-value=5.9e-10 Score=101.43 Aligned_cols=77 Identities=23% Similarity=0.279 Sum_probs=55.2
Q ss_pred CCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccC---------CCCCCCcEEEEEecCCCc-hhhHHHHhccceE
Q psy4538 57 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGA---------STLDDDLVLVIGATNRPQ-ELDEAARRRLVKR 126 (343)
Q Consensus 57 ~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~v~vi~~tn~~~-~l~~~l~~rf~~~ 126 (343)
++.+|||||++.+. ...+..++..|+.. ......+++++++.|..+ .+++++..||...
T Consensus 131 ~~GvL~lDEi~~L~-----------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~ 199 (337)
T TIGR02030 131 NRGILYIDEVNLLE-----------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLH 199 (337)
T ss_pred cCCEEEecChHhCC-----------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceE
Confidence 35799999999873 23444555555332 111235678888887655 6899999999999
Q ss_pred EEEcCCCH-HHHHHHHHHH
Q psy4538 127 LYIPLPDE-QARCEIVTKL 144 (343)
Q Consensus 127 i~~~~P~~-~er~~il~~~ 144 (343)
+.++.|.. +++.+|++..
T Consensus 200 i~l~~p~~~eer~eIL~~~ 218 (337)
T TIGR02030 200 AEIRTVRDVELRVEIVERR 218 (337)
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 99999976 8888888774
No 195
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.16 E-value=8e-11 Score=97.09 Aligned_cols=113 Identities=24% Similarity=0.352 Sum_probs=76.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC----cEEEEecccccccccchHHHHHHHHHHH----HHhcCCcEEEeccccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA----TFFCISASTLTSKWYGEGEKMVRALFAV----ASVHQPSIIFIDEIDSLLCQ 72 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~----~~~~v~~~~l~~~~~~~~~~~l~~~~~~----~~~~~p~vl~iDeid~l~~~ 72 (343)
++|+||+|+|||.+|+++|+.+.. +++.++++.+... +.....+..+... .......||+|||||+..+.
T Consensus 6 ~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~~ 83 (171)
T PF07724_consen 6 FLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHPS 83 (171)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhcccc
Confidence 589999999999999999999996 9999999988661 0111111111111 11122349999999999876
Q ss_pred CCCCchhHHHHHHHHHHHhhccCCC-------CCCCcEEEEEecCCCchh
Q psy4538 73 RSDQENETSRRLKTEFLISLDGAST-------LDDDLVLVIGATNRPQEL 115 (343)
Q Consensus 73 ~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~v~vi~~tn~~~~l 115 (343)
.+...+-....+.+.|+..+++..- .+-+++++|+|+|--...
T Consensus 84 ~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~ 133 (171)
T PF07724_consen 84 NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEE 133 (171)
T ss_dssp TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHH
T ss_pred ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccch
Confidence 5555555566777888887764321 123568899999876544
No 196
>KOG0742|consensus
Probab=99.14 E-value=4.6e-11 Score=107.30 Aligned_cols=109 Identities=25% Similarity=0.384 Sum_probs=77.4
Q ss_pred cceEeecchhhhhcccCCCc-chhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHHhhhceEeccCCCCCC
Q psy4538 225 PSIIFIDEIDSLLCQRSDQE-NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQK 303 (343)
Q Consensus 225 p~ilf~DEiDsl~~~R~~~~-~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allRR~d~~i~~~~P~~~~ 303 (343)
.-+|||||+|+++..|+... +.-.+..+|.||.. .|-.+++ ++++.|||+|.-+|.|+--|||.+|+||+|.+++
T Consensus 444 GLllFIDEADAFLceRnktymSEaqRsaLNAlLfR-TGdqSrd---ivLvlAtNrpgdlDsAV~DRide~veFpLPGeEE 519 (630)
T KOG0742|consen 444 GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR-TGDQSRD---IVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEE 519 (630)
T ss_pred ceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHH-hcccccc---eEEEeccCCccchhHHHHhhhhheeecCCCChHH
Confidence 44999999999999997543 33456789999988 4544433 7889999999999999999999999999999987
Q ss_pred CCCCchhHHH--Hhhhhhhh-----hhhcHHHHHhhcCCCCCccC
Q psy4538 304 VPGSNPTMDK--IDQENETS-----RRLKTEFLISLDGASTLDDD 341 (343)
Q Consensus 304 r~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 341 (343)
|. .+=+ +++-+..+ ...|..+|+-..-+.++.++
T Consensus 520 Rf----kll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~ 560 (630)
T KOG0742|consen 520 RF----KLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGF 560 (630)
T ss_pred HH----HHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccc
Confidence 61 1111 22222111 34566666666666666554
No 197
>KOG1514|consensus
Probab=99.14 E-value=9.8e-10 Score=105.09 Aligned_cols=200 Identities=23% Similarity=0.287 Sum_probs=132.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----------CCcEEEEecccccccc----------cchH---H---HHHHHHHHHH-
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----------KATFFCISASTLTSKW----------YGEG---E---KMVRALFAVA- 53 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~~~~l~~~~----------~~~~---~---~~l~~~~~~~- 53 (343)
++++|-||||||.+++.+-+++ ...|+++|+-.+.+.. .|+. . ..+..-|...
T Consensus 425 mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k 504 (767)
T KOG1514|consen 425 MYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPK 504 (767)
T ss_pred EEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCC
Confidence 5789999999999999998866 3578888887665421 1111 1 1122222211
Q ss_pred HhcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHH----hccc-eEEE
Q psy4538 54 SVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAAR----RRLV-KRLY 128 (343)
Q Consensus 54 ~~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~----~rf~-~~i~ 128 (343)
....++||+|||+|.|....++ +++.+......++.+++||+..|..+....-+. +|.+ ..+.
T Consensus 505 ~~~~~~VvLiDElD~Lvtr~Qd------------VlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~ 572 (767)
T KOG1514|consen 505 PKRSTTVVLIDELDILVTRSQD------------VLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRIC 572 (767)
T ss_pred CCCCCEEEEeccHHHHhcccHH------------HHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhccceeee
Confidence 1245789999999999754322 333333444457888999999988765544333 4666 5689
Q ss_pred EcCCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCH--HHHHHHHHHHhcccccccccccccccCCcccChhHHH
Q psy4538 129 IPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSG--ADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFR 206 (343)
Q Consensus 129 ~~~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~--~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~ 206 (343)
|.+++..|..+|+...++.. ..+....++.+|+.....+| +....+|+.|...|..+.. .-.......+++-|+.
T Consensus 573 F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~--~~k~~~~q~v~~~~v~ 649 (767)
T KOG1514|consen 573 FQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNV--KGKLAVSQLVGILHVM 649 (767)
T ss_pred cCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcc--cccccccceeehHHHH
Confidence 99999999999999999887 34566677777776665554 3344678888776665532 1122233457888999
Q ss_pred HHHHhcCCC
Q psy4538 207 DALKTVRPS 215 (343)
Q Consensus 207 ~a~~~~~ps 215 (343)
+|+..+..+
T Consensus 650 ~Ai~em~~~ 658 (767)
T KOG1514|consen 650 EAINEMLAS 658 (767)
T ss_pred HHHHHHhhh
Confidence 999887654
No 198
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=1.5e-09 Score=98.92 Aligned_cols=143 Identities=12% Similarity=0.194 Sum_probs=95.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc--------EEEEecccccccccchHHHHHHHHHHHHH----hcCCcEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT--------FFCISASTLTSKWYGEGEKMVRALFAVAS----VHQPSIIFIDEIDS 68 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~--------~~~v~~~~l~~~~~~~~~~~l~~~~~~~~----~~~p~vl~iDeid~ 68 (343)
.||+||+|+|||++|+.+|+.+.+. +..+...+ +.. .....++.+..... .....|++||++|.
T Consensus 29 ~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~--~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~ 104 (313)
T PRK05564 29 HIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN--KKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEK 104 (313)
T ss_pred EEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc--CCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhh
Confidence 3799999999999999999987432 22332211 110 11223444444332 23456999999997
Q ss_pred ccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhh
Q psy4538 69 LLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNI 148 (343)
Q Consensus 69 l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~ 148 (343)
+- ....+.++..++.. ...+++|.+|+.++.+.+.+++|+. .++|++|+.++....++..+.
T Consensus 105 m~-----------~~a~naLLK~LEep----p~~t~~il~~~~~~~ll~TI~SRc~-~~~~~~~~~~~~~~~l~~~~~-- 166 (313)
T PRK05564 105 MT-----------EQAQNAFLKTIEEP----PKGVFIILLCENLEQILDTIKSRCQ-IYKLNRLSKEEIEKFISYKYN-- 166 (313)
T ss_pred cC-----------HHHHHHHHHHhcCC----CCCeEEEEEeCChHhCcHHHHhhce-eeeCCCcCHHHHHHHHHHHhc--
Confidence 72 23456788888764 3345555566778999999999996 899999999988777765443
Q ss_pred CCCCChhhHHHHHHHCCCC
Q psy4538 149 TNSLTVDDIEEVGRMTTDF 167 (343)
Q Consensus 149 ~~~~~~~~~~~la~~t~g~ 167 (343)
..+++.+..++..+.|-
T Consensus 167 --~~~~~~~~~l~~~~~g~ 183 (313)
T PRK05564 167 --DIKEEEKKSAIAFSDGI 183 (313)
T ss_pred --CCCHHHHHHHHHHcCCC
Confidence 34556677777777653
No 199
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.11 E-value=2e-09 Score=105.51 Aligned_cols=132 Identities=18% Similarity=0.236 Sum_probs=85.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC--cEEEEecccccccccchHHHHHHHHHHH---------HHhcCCcEEEecccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA--TFFCISASTLTSKWYGEGEKMVRALFAV---------ASVHQPSIIFIDEIDSL 69 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~--~~~~v~~~~l~~~~~~~~~~~l~~~~~~---------~~~~~p~vl~iDeid~l 69 (343)
|||.|+||||||++|+++++.++. +|+.+..........|.. .+...+.. ....+..+|||||++.+
T Consensus 19 vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 19 VAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred EEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 689999999999999999998754 577776532222222221 01110110 01123469999999987
Q ss_pred cccCCCCchhHHHHHHHHHHHhhccCC---------CCCCCcEEEEEecCCCc---hhhHHHHhccceEEEEcC-CCHHH
Q psy4538 70 LCQRSDQENETSRRLKTEFLISLDGAS---------TLDDDLVLVIGATNRPQ---ELDEAARRRLVKRLYIPL-PDEQA 136 (343)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~v~vi~~tn~~~---~l~~~l~~rf~~~i~~~~-P~~~e 136 (343)
- ...+..|+..|+... ......+.+|+++|..+ .+.+.+..||...+.+.. |+.++
T Consensus 97 ~-----------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~e 165 (589)
T TIGR02031 97 D-----------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDL 165 (589)
T ss_pred C-----------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHH
Confidence 3 244455555554321 11234578888888765 788999999998777654 57788
Q ss_pred HHHHHHHHH
Q psy4538 137 RCEIVTKLL 145 (343)
Q Consensus 137 r~~il~~~l 145 (343)
|.+|++..+
T Consensus 166 r~eil~~~~ 174 (589)
T TIGR02031 166 RVEIVRRER 174 (589)
T ss_pred HHHHHHHHH
Confidence 889888765
No 200
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.10 E-value=7.5e-10 Score=102.98 Aligned_cols=120 Identities=23% Similarity=0.330 Sum_probs=71.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc-------EEEEec----cccccccc----ch--HHHHHHHHHHHHHh--cCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT-------FFCISA----STLTSKWY----GE--GEKMVRALFAVASV--HQPSII 61 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~-------~~~v~~----~~l~~~~~----~~--~~~~l~~~~~~~~~--~~p~vl 61 (343)
++|+||||||||++|+.+|..+... ++.+.. .++...+. +. .......+...+.. ..|.+|
T Consensus 197 iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vl 276 (459)
T PRK11331 197 IILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVF 276 (459)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEE
Confidence 5899999999999999999988431 222221 12221111 10 01122233344432 357899
Q ss_pred EecccccccccCCCCchhHHHHHHHHHHHhhccC------------------CCCCCCcEEEEEecCCCc----hhhHHH
Q psy4538 62 FIDEIDSLLCQRSDQENETSRRLKTEFLISLDGA------------------STLDDDLVLVIGATNRPQ----ELDEAA 119 (343)
Q Consensus 62 ~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~------------------~~~~~~~v~vi~~tn~~~----~l~~~l 119 (343)
+|||++..- ..++..+++..++.- .-....++.+|||+|..+ .+|.++
T Consensus 277 iIDEINRan----------i~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~Al 346 (459)
T PRK11331 277 IIDEINRAN----------LSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYAL 346 (459)
T ss_pred EEehhhccC----------HHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhccHHH
Confidence 999998642 122222333322210 012356799999999887 899999
Q ss_pred HhccceEEEEcC
Q psy4538 120 RRRLVKRLYIPL 131 (343)
Q Consensus 120 ~~rf~~~i~~~~ 131 (343)
+|||. .+++.+
T Consensus 347 rRRF~-fi~i~p 357 (459)
T PRK11331 347 RRRFS-FIDIEP 357 (459)
T ss_pred Hhhhh-eEEecC
Confidence 99997 566654
No 201
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.10 E-value=2.8e-09 Score=97.07 Aligned_cols=77 Identities=22% Similarity=0.243 Sum_probs=55.6
Q ss_pred CcEEEecccccccccCCCCchhHHHHHHHHHHHhhcc---------CCCCCCCcEEEEEecCCCc-hhhHHHHhccceEE
Q psy4538 58 PSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDG---------ASTLDDDLVLVIGATNRPQ-ELDEAARRRLVKRL 127 (343)
Q Consensus 58 p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~---------~~~~~~~~v~vi~~tn~~~-~l~~~l~~rf~~~i 127 (343)
.++||+||++.+. ...+..++..++. .......+++++++.|..+ .+.+.+..||...+
T Consensus 145 ~GiL~lDEInrL~-----------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i 213 (350)
T CHL00081 145 RGILYVDEVNLLD-----------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHA 213 (350)
T ss_pred CCEEEecChHhCC-----------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCcee
Confidence 5799999999873 2334445555432 1112245688888888655 69999999999999
Q ss_pred EEcCCC-HHHHHHHHHHHH
Q psy4538 128 YIPLPD-EQARCEIVTKLL 145 (343)
Q Consensus 128 ~~~~P~-~~er~~il~~~l 145 (343)
.+..|+ .+++.+|++...
T Consensus 214 ~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 214 EIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred ecCCCCChHHHHHHHHhhh
Confidence 999997 588989988753
No 202
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.10 E-value=8.2e-10 Score=109.37 Aligned_cols=132 Identities=20% Similarity=0.271 Sum_probs=82.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-----------------------------------CCcEEEEecccccccccchHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-----------------------------------KATFFCISASTLTSKWYGEGEKM 45 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-----------------------------------~~~~~~v~~~~l~~~~~~~~~~~ 45 (343)
|||+|++|||||++|+++++.+ ..+|+.+.+........|...
T Consensus 28 vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d-- 105 (633)
T TIGR02442 28 VLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD-- 105 (633)
T ss_pred EEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc--
Confidence 6899999999999999999988 235555444332222222110
Q ss_pred HHHHHHH---------HHhcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCC---------CCCCCcEEEEE
Q psy4538 46 VRALFAV---------ASVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAS---------TLDDDLVLVIG 107 (343)
Q Consensus 46 l~~~~~~---------~~~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~v~vi~ 107 (343)
+...+.. ......++|||||++.+- ...+..|+..++... .....++.+|+
T Consensus 106 ~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~-----------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIa 174 (633)
T TIGR02442 106 IERALREGEKAFQPGLLAEAHRGILYIDEVNLLD-----------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIG 174 (633)
T ss_pred HHHHhhcCCeeecCcceeecCCCeEEeChhhhCC-----------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEE
Confidence 1111110 011234699999999873 234455665554321 11234578899
Q ss_pred ecCCC-chhhHHHHhccceEEEEcCCC-HHHHHHHHHHHH
Q psy4538 108 ATNRP-QELDEAARRRLVKRLYIPLPD-EQARCEIVTKLL 145 (343)
Q Consensus 108 ~tn~~-~~l~~~l~~rf~~~i~~~~P~-~~er~~il~~~l 145 (343)
++|.. ..+.+.+..||...+.++.|. .+++.+++++..
T Consensus 175 t~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 175 TMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred ecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHH
Confidence 88864 468899999999888888774 577777776543
No 203
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.10 E-value=2.7e-09 Score=95.90 Aligned_cols=105 Identities=18% Similarity=0.218 Sum_probs=64.3
Q ss_pred CcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecC------------CCchhhHHHHhccce
Q psy4538 58 PSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATN------------RPQELDEAARRRLVK 125 (343)
Q Consensus 58 p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn------------~~~~l~~~l~~rf~~ 125 (343)
|+||||||+|-|- ..-..-|-+.++. +-.+++++ +|| .|.-+|..|++|+-
T Consensus 279 pGVLFIDEvHmLD-----------iEcFsfLnralEs----~~sPiiIl-ATNRg~~~irGt~~~sphGiP~DlLDRll- 341 (398)
T PF06068_consen 279 PGVLFIDEVHMLD-----------IECFSFLNRALES----ELSPIIIL-ATNRGITKIRGTDIISPHGIPLDLLDRLL- 341 (398)
T ss_dssp E-EEEEESGGGSB-----------HHHHHHHHHHHTS----TT--EEEE-EES-SEEE-BTTS-EEETT--HHHHTTEE-
T ss_pred cceEEecchhhcc-----------HHHHHHHHHHhcC----CCCcEEEE-ecCceeeeccCccCcCCCCCCcchHhhcE-
Confidence 7899999999772 1111222223332 23445554 454 35678889999986
Q ss_pred EEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHH
Q psy4538 126 RLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREA 179 (343)
Q Consensus 126 ~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a 179 (343)
.|...+++.++..+|++..++.....++++.+..|++.....+.+-.-+++..|
T Consensus 342 II~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a 395 (398)
T PF06068_consen 342 IIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPA 395 (398)
T ss_dssp EEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHH
T ss_pred EEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhh
Confidence 888999999999999999999999999999999998877666666655555443
No 204
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.10 E-value=3.3e-09 Score=96.87 Aligned_cols=168 Identities=17% Similarity=0.210 Sum_probs=104.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccc-----cchHH-------HHHHHHHHHHHhcCCcEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKW-----YGEGE-------KMVRALFAVASVHQPSIIFIDE 65 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~-----~~~~~-------~~l~~~~~~~~~~~p~vl~iDe 65 (343)
|||+|++||||+++|+++-... +.+|+.++|..+.... .|... ......+. ...++.|||||
T Consensus 32 VlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~---~a~gGtL~l~~ 108 (326)
T PRK11608 32 VLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFE---RADGGTLFLDE 108 (326)
T ss_pred EEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchh---ccCCCeEEeCC
Confidence 6899999999999999997655 4689999998763210 01000 00001122 23467899999
Q ss_pred cccccccCCCCchhHHHHHHHHHHHhhccCCCC-------CCCcEEEEEecCCC-------chhhHHHHhccceEEEEcC
Q psy4538 66 IDSLLCQRSDQENETSRRLKTEFLISLDGASTL-------DDDLVLVIGATNRP-------QELDEAARRRLVKRLYIPL 131 (343)
Q Consensus 66 id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~v~vi~~tn~~-------~~l~~~l~~rf~~~i~~~~ 131 (343)
++.+. ......++..++..... ....+.+|++++.. ..+.+.+..|+. .+.+..
T Consensus 109 i~~L~-----------~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~-~~~i~l 176 (326)
T PRK11608 109 LATAP-----------MLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLA-FDVVQL 176 (326)
T ss_pred hhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcC-CCEEEC
Confidence 99883 23344455555432210 12347788877653 244566666775 334444
Q ss_pred CCHHHH----HHHHHHHHhh----hC----CCCChhhHHHHHHHCCCCCHHHHHHHHHHHhccc
Q psy4538 132 PDEQAR----CEIVTKLLRN----IT----NSLTVDDIEEVGRMTTDFSGADMASLCREASLGP 183 (343)
Q Consensus 132 P~~~er----~~il~~~l~~----~~----~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a 183 (343)
|...+| ..++.+++.. ++ ..++++.+..|..+..-.+.++|+++++.++..+
T Consensus 177 PpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 177 PPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred CChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 444444 3445555432 22 2468888999999888789999999999987654
No 205
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=3.5e-09 Score=96.60 Aligned_cols=143 Identities=15% Similarity=0.221 Sum_probs=97.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc------------------------EEEEecccccccccchHHHHHHHHHHHH---
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT------------------------FFCISASTLTSKWYGEGEKMVRALFAVA--- 53 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~------------------------~~~v~~~~l~~~~~~~~~~~l~~~~~~~--- 53 (343)
+||+||+|+||+++|.++|+.+-+. ++.+.+..-. . .-.-..++.+.+..
T Consensus 27 ~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~-~--~I~idqiR~l~~~~~~~ 103 (334)
T PRK07993 27 LLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGK-S--SLGVDAVREVTEKLYEH 103 (334)
T ss_pred EeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccc-c--cCCHHHHHHHHHHHhhc
Confidence 4799999999999999999987431 2222211100 0 01123344444433
Q ss_pred -HhcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 54 -SVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 54 -~~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
......|++||++|.+- ....+.|+..++.. ....++|.+|+.++.+.+.++||+. .+.|++|
T Consensus 104 ~~~g~~kV~iI~~ae~m~-----------~~AaNaLLKtLEEP----p~~t~fiL~t~~~~~lLpTIrSRCq-~~~~~~~ 167 (334)
T PRK07993 104 ARLGGAKVVWLPDAALLT-----------DAAANALLKTLEEP----PENTWFFLACREPARLLATLRSRCR-LHYLAPP 167 (334)
T ss_pred cccCCceEEEEcchHhhC-----------HHHHHHHHHHhcCC----CCCeEEEEEECChhhChHHHHhccc-cccCCCC
Confidence 23456799999999872 34567889888874 5567888889999999999999998 7899999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCC
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDF 167 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~ 167 (343)
+.++..+.+... ...+.+....++..+.|-
T Consensus 168 ~~~~~~~~L~~~-----~~~~~~~a~~~~~la~G~ 197 (334)
T PRK07993 168 PEQYALTWLSRE-----VTMSQDALLAALRLSAGA 197 (334)
T ss_pred CHHHHHHHHHHc-----cCCCHHHHHHHHHHcCCC
Confidence 988887776532 124455556666766653
No 206
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=4.8e-09 Score=94.90 Aligned_cols=141 Identities=16% Similarity=0.185 Sum_probs=95.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc------------------------EEEEecccccccccchHHHHHHHHHHHHH--
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT------------------------FFCISASTLTSKWYGEGEKMVRALFAVAS-- 54 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~------------------------~~~v~~~~l~~~~~~~~~~~l~~~~~~~~-- 54 (343)
+||+||+|+||+++|+++|+.+.+. ++.+.+.+ ++ .-....++.+.+...
T Consensus 27 ~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~--~I~id~iR~l~~~~~~~ 102 (325)
T PRK06871 27 LLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NK--DIGVDQVREINEKVSQH 102 (325)
T ss_pred EEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CC--CCCHHHHHHHHHHHhhc
Confidence 4799999999999999999987432 22222110 00 012334455444332
Q ss_pred --hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 55 --VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 55 --~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
.....|++||++|.+- ....+.|+..++.. ...+++|.+|+.+..+.+.++||+. .+.|++|
T Consensus 103 ~~~g~~KV~iI~~a~~m~-----------~~AaNaLLKtLEEP----p~~~~fiL~t~~~~~llpTI~SRC~-~~~~~~~ 166 (325)
T PRK06871 103 AQQGGNKVVYIQGAERLT-----------EAAANALLKTLEEP----RPNTYFLLQADLSAALLPTIYSRCQ-TWLIHPP 166 (325)
T ss_pred cccCCceEEEEechhhhC-----------HHHHHHHHHHhcCC----CCCeEEEEEECChHhCchHHHhhce-EEeCCCC
Confidence 2345699999999882 34567788888874 5567888899999999999999997 8899999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCC
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTD 166 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g 166 (343)
+.++..+.+..... ........++..+.|
T Consensus 167 ~~~~~~~~L~~~~~-----~~~~~~~~~~~l~~g 195 (325)
T PRK06871 167 EEQQALDWLQAQSS-----AEISEILTALRINYG 195 (325)
T ss_pred CHHHHHHHHHHHhc-----cChHHHHHHHHHcCC
Confidence 99988777765421 122234445555554
No 207
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=3.8e-09 Score=97.47 Aligned_cols=155 Identities=17% Similarity=0.149 Sum_probs=97.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcE----------------------------------EEEecc--cccccc-cchHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATF----------------------------------FCISAS--TLTSKW-YGEGE 43 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~----------------------------------~~v~~~--~l~~~~-~~~~~ 43 (343)
+||+||+|+||+++|.++|+.+-+.- +.+... +-..+. ..-.-
T Consensus 44 ~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~V 123 (365)
T PRK07471 44 WLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITV 123 (365)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccH
Confidence 48999999999999999999873211 111110 000000 00012
Q ss_pred HHHHHHHHHHH----hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHH
Q psy4538 44 KMVRALFAVAS----VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAA 119 (343)
Q Consensus 44 ~~l~~~~~~~~----~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l 119 (343)
..++.+..... ...+.|++|||+|.+- ....+.|+..++.. ....++|.+|+.++.+.+.+
T Consensus 124 dqiR~l~~~~~~~~~~~~~kVviIDead~m~-----------~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti 188 (365)
T PRK07471 124 DEVRELISFFGLTAAEGGWRVVIVDTADEMN-----------ANAANALLKVLEEP----PARSLFLLVSHAPARLLPTI 188 (365)
T ss_pred HHHHHHHHHhCcCcccCCCEEEEEechHhcC-----------HHHHHHHHHHHhcC----CCCeEEEEEECCchhchHHh
Confidence 23444443322 2457899999999772 34456788877764 33456666888888899999
Q ss_pred HhccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHH
Q psy4538 120 RRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLC 176 (343)
Q Consensus 120 ~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~ 176 (343)
++|+. .+.|++|+.++..+++..... ...+..+..++..+.| ++.....++
T Consensus 189 ~SRc~-~i~l~~l~~~~i~~~L~~~~~----~~~~~~~~~l~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 189 RSRCR-KLRLRPLAPEDVIDALAAAGP----DLPDDPRAALAALAEG-SVGRALRLA 239 (365)
T ss_pred hccce-EEECCCCCHHHHHHHHHHhcc----cCCHHHHHHHHHHcCC-CHHHHHHHh
Confidence 99986 899999999999888876532 2233344566666665 555544444
No 208
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.06 E-value=2.8e-09 Score=104.12 Aligned_cols=166 Identities=20% Similarity=0.249 Sum_probs=105.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchHHHHHHHHHHH---------------HHhcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEGEKMVRALFAV---------------ASVHQPSIIF 62 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~---------------~~~~~p~vl~ 62 (343)
|||+|++||||+++|+++.... +.+|+.++|..+..... + ..+|.. .....++.||
T Consensus 222 vli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~---~---~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ 295 (534)
T TIGR01817 222 VLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLL---E---SELFGHEKGAFTGAIAQRKGRFELADGGTLF 295 (534)
T ss_pred EEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHH---H---HHHcCCCCCccCCCCcCCCCcccccCCCeEE
Confidence 6899999999999999998875 56999999987633210 1 111110 1122467999
Q ss_pred ecccccccccCCCCchhHHHHHHHHHHHhhccCCCC-------CCCcEEEEEecCCCc-------hhhHHHHhccc-eEE
Q psy4538 63 IDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTL-------DDDLVLVIGATNRPQ-------ELDEAARRRLV-KRL 127 (343)
Q Consensus 63 iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~v~vi~~tn~~~-------~l~~~l~~rf~-~~i 127 (343)
|||++.+. ......++..++..... ....+.+|++|+..- .+.+.+..|+. ..|
T Consensus 296 ldei~~L~-----------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i 364 (534)
T TIGR01817 296 LDEIGEIS-----------PAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPI 364 (534)
T ss_pred EechhhCC-----------HHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCee
Confidence 99999883 23344555555432210 112467788776531 23344555654 345
Q ss_pred EEcCCC--HHHHHHHHHHHHhhh------CCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhccc
Q psy4538 128 YIPLPD--EQARCEIVTKLLRNI------TNSLTVDDIEEVGRMTTDFSGADMASLCREASLGP 183 (343)
Q Consensus 128 ~~~~P~--~~er~~il~~~l~~~------~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a 183 (343)
.+|+.. .++...++++++... ...++++.+..|..+....+.++|+++++.++..+
T Consensus 365 ~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 365 FLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATLS 428 (534)
T ss_pred eCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 555543 244445566665532 14578889999999887789999999999987654
No 209
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2e-09 Score=105.93 Aligned_cols=165 Identities=19% Similarity=0.237 Sum_probs=115.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC---CcEEEEeccccccc------------ccchHHHHHHHHHHHH-HhcCCcEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK---ATFFCISASTLTSK------------WYGEGEKMVRALFAVA-SVHQPSIIFID 64 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~---~~~~~v~~~~l~~~------------~~~~~~~~l~~~~~~~-~~~~p~vl~iD 64 (343)
+||.||+|+|||.+|+++|..+. ..++.++++++..+ |+|+.+ ...+.++ +.+-++|++||
T Consensus 524 FlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyee---GG~LTEaVRr~PySViLlD 600 (786)
T COG0542 524 FLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEE---GGQLTEAVRRKPYSVILLD 600 (786)
T ss_pred EEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecc---ccchhHhhhcCCCeEEEec
Confidence 47899999999999999999996 78999999887532 333322 1223333 43446899999
Q ss_pred ccccccccCCCCchhHHHHHHHHHHHhhccCCCC-------CCCcEEEEEecCCCc------------------------
Q psy4538 65 EIDSLLCQRSDQENETSRRLKTEFLISLDGASTL-------DDDLVLVIGATNRPQ------------------------ 113 (343)
Q Consensus 65 eid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~v~vi~~tn~~~------------------------ 113 (343)
||++- ..++.+.|+..++...-. +-.+.++|.|+|--.
T Consensus 601 EIEKA-----------HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~ 669 (786)
T COG0542 601 EIEKA-----------HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVME 669 (786)
T ss_pred hhhhc-----------CHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHH
Confidence 99965 356778888887754322 234577888886521
Q ss_pred ----hhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhh---------CCCCChhhHHHHHHHCC--CCCHHHHHHHHHH
Q psy4538 114 ----ELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNI---------TNSLTVDDIEEVGRMTT--DFSGADMASLCRE 178 (343)
Q Consensus 114 ----~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~---------~~~~~~~~~~~la~~t~--g~s~~dl~~l~~~ 178 (343)
...|+|+.|++..|.|.+.+.+...+|+...+... ...++++....+++... .|-++-++.+++.
T Consensus 670 ~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~ 749 (786)
T COG0542 670 ELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQ 749 (786)
T ss_pred HHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHH
Confidence 12467788999999999999999999988776542 23457777777887653 4556667766654
Q ss_pred H
Q psy4538 179 A 179 (343)
Q Consensus 179 a 179 (343)
-
T Consensus 750 ~ 750 (786)
T COG0542 750 E 750 (786)
T ss_pred H
Confidence 4
No 210
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.06 E-value=1.4e-09 Score=105.24 Aligned_cols=133 Identities=22% Similarity=0.246 Sum_probs=80.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEE----ecccccccccch---HHHHHHHHHHHHHhcCCcEEEecccccccccC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI----SASTLTSKWYGE---GEKMVRALFAVASVHQPSIIFIDEIDSLLCQR 73 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v----~~~~l~~~~~~~---~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~ 73 (343)
|||+|+||+|||++|+++++......+.. ++..+....... ++..++. -.....+.++++|||++.+-.
T Consensus 239 vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~--G~l~~A~~Gil~iDEi~~l~~-- 314 (509)
T smart00350 239 ILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEG--GALVLADNGVCCIDEFDKMDD-- 314 (509)
T ss_pred EEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecC--ccEEecCCCEEEEechhhCCH--
Confidence 68999999999999999999875432221 221221110000 0000000 000113467999999998732
Q ss_pred CCCchhHHHHHHHHHHHhhccCC---------CCCCCcEEEEEecCCCc-------------hhhHHHHhccceE-EEEc
Q psy4538 74 SDQENETSRRLKTEFLISLDGAS---------TLDDDLVLVIGATNRPQ-------------ELDEAARRRLVKR-LYIP 130 (343)
Q Consensus 74 ~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~v~vi~~tn~~~-------------~l~~~l~~rf~~~-i~~~ 130 (343)
.....++..|+.-. ..-+.++.+|+++|+.. .+++++++||+.. +..+
T Consensus 315 ---------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d 385 (509)
T smart00350 315 ---------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLD 385 (509)
T ss_pred ---------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecC
Confidence 22333444443211 11235678999998753 5899999999865 4558
Q ss_pred CCCHHHHHHHHHHHHh
Q psy4538 131 LPDEQARCEIVTKLLR 146 (343)
Q Consensus 131 ~P~~~er~~il~~~l~ 146 (343)
.|+.+...+|.++.+.
T Consensus 386 ~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 386 EVDEERDRELAKHVVD 401 (509)
T ss_pred CCChHHHHHHHHHHHH
Confidence 8999999898887654
No 211
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.1e-09 Score=95.56 Aligned_cols=95 Identities=31% Similarity=0.533 Sum_probs=70.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccc-ccccchHH-HHHHHHHHHH----HhcCCcEEEecccccccccCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLT-SKWYGEGE-KMVRALFAVA----SVHQPSIIFIDEIDSLLCQRS 74 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~-~~~~~~~~-~~l~~~~~~~----~~~~p~vl~iDeid~l~~~~~ 74 (343)
|||.||+|||||.||+.+|+.++.||-..++..+. ..|+|+.. ..+..+++.+ ...+.+|++|||+|.+..++.
T Consensus 100 ILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSe 179 (408)
T COG1219 100 ILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSE 179 (408)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCC
Confidence 68999999999999999999999999999998886 45777653 3445555433 123467999999999986653
Q ss_pred CC---chhHHHHHHHHHHHhhccC
Q psy4538 75 DQ---ENETSRRLKTEFLISLDGA 95 (343)
Q Consensus 75 ~~---~~~~~~~~~~~ll~~l~~~ 95 (343)
+. .+-....+.+.|+..+++.
T Consensus 180 N~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 180 NPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred CCCcccccCchHHHHHHHHHHcCc
Confidence 22 1223456677888888754
No 212
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.04 E-value=6e-09 Score=104.01 Aligned_cols=179 Identities=17% Similarity=0.280 Sum_probs=111.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchHHHHHHHHHHH------------HHhcCCcEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEGEKMVRALFAV------------ASVHQPSIIFIDE 65 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~------------~~~~~p~vl~iDe 65 (343)
|||+|++||||+++|+++.+.. +.+|+.++|..+.... .-..+|.. .....++.|||||
T Consensus 351 vli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~------~~~elfg~~~~~~~~~~~g~~~~a~~GtL~lde 424 (638)
T PRK11388 351 VLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEA------LAEEFLGSDRTDSENGRLSKFELAHGGTLFLEK 424 (638)
T ss_pred EEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHH------HHHHhcCCCCcCccCCCCCceeECCCCEEEEcC
Confidence 6899999999999999998865 4699999998764210 01111110 1113467999999
Q ss_pred cccccccCCCCchhHHHHHHHHHHHhhccCCCC--C-----CCcEEEEEecCCCc-------hhhHHHHhccceEEEEcC
Q psy4538 66 IDSLLCQRSDQENETSRRLKTEFLISLDGASTL--D-----DDLVLVIGATNRPQ-------ELDEAARRRLVKRLYIPL 131 (343)
Q Consensus 66 id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~-----~~~v~vi~~tn~~~-------~l~~~l~~rf~~~i~~~~ 131 (343)
++.+. ......|+..++..... . ...+.+|++|+..- .+.+.+..|+. .+.+..
T Consensus 425 i~~l~-----------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~-~~~i~l 492 (638)
T PRK11388 425 VEYLS-----------PELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALH-AFEITI 492 (638)
T ss_pred hhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhc-eeEEeC
Confidence 99883 23344455555432211 0 12467888886532 22333333443 455566
Q ss_pred CCHHHHH----HHHHHHHhhh------CCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccC
Q psy4538 132 PDEQARC----EIVTKLLRNI------TNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPIS 201 (343)
Q Consensus 132 P~~~er~----~il~~~l~~~------~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~ 201 (343)
|...+|. .++.+++..+ ...++++.+..|..+....+.++|+++++.+...+-. ..|+
T Consensus 493 PpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~~~------------~~i~ 560 (638)
T PRK11388 493 PPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSSDN------------GRIR 560 (638)
T ss_pred CChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCC------------Ceec
Confidence 6665553 3445554432 2357888999999988778999999999998754421 2466
Q ss_pred hhHHHHHH
Q psy4538 202 IDDFRDAL 209 (343)
Q Consensus 202 ~~d~~~a~ 209 (343)
.+|+...+
T Consensus 561 ~~~lp~~~ 568 (638)
T PRK11388 561 LSDLPEHL 568 (638)
T ss_pred HHHCchhh
Confidence 66665544
No 213
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.04 E-value=4.4e-09 Score=98.71 Aligned_cols=132 Identities=20% Similarity=0.305 Sum_probs=74.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC--cEEEEecc-cccccccchH-HHHH--HHHHHHHH---hcCCcEEEecccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA--TFFCISAS-TLTSKWYGEG-EKMV--RALFAVAS---VHQPSIIFIDEIDSLLC 71 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~--~~~~v~~~-~l~~~~~~~~-~~~l--~~~~~~~~---~~~p~vl~iDeid~l~~ 71 (343)
+||+||||||||++|++++...+. +|..+++. .......|.. -... ..-|.... .....+||+|||..+
T Consensus 42 VLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-- 119 (498)
T PRK13531 42 VFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-- 119 (498)
T ss_pred EEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccccC--
Confidence 589999999999999999997743 34433332 1111112211 0000 11121111 112348999999865
Q ss_pred cCCCCchhHHHHHHHHHHHhhccCCCC-------CCCcEEEEEecCCCch---hhHHHHhccceEEEEcCCC-HHHHHHH
Q psy4538 72 QRSDQENETSRRLKTEFLISLDGASTL-------DDDLVLVIGATNRPQE---LDEAARRRLVKRLYIPLPD-EQARCEI 140 (343)
Q Consensus 72 ~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~v~vi~~tn~~~~---l~~~l~~rf~~~i~~~~P~-~~er~~i 140 (343)
.......|+..|+...-. -+.+ +++++||.... ..+++..||...+.+|+|+ .++-.++
T Consensus 120 ---------sp~~QsaLLeam~Er~~t~g~~~~~lp~r-fiv~ATN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~l 189 (498)
T PRK13531 120 ---------GPAILNTLLTAINERRFRNGAHEEKIPMR-LLVTASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSM 189 (498)
T ss_pred ---------CHHHHHHHHHHHHhCeEecCCeEEeCCCc-EEEEECCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHH
Confidence 245566677766432211 1223 34445564322 2347888998889999997 4555777
Q ss_pred HHHH
Q psy4538 141 VTKL 144 (343)
Q Consensus 141 l~~~ 144 (343)
+...
T Consensus 190 L~~~ 193 (498)
T PRK13531 190 LTSQ 193 (498)
T ss_pred HHcc
Confidence 7653
No 214
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=3.3e-09 Score=96.56 Aligned_cols=127 Identities=17% Similarity=0.171 Sum_probs=88.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcE-------------------------EEEeccccc------------------cc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATF-------------------------FCISASTLT------------------SK 37 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~-------------------------~~v~~~~l~------------------~~ 37 (343)
+||+||+|+||+++|+.+|+.+.+.- +.+.+.... ++
T Consensus 24 ~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~ 103 (342)
T PRK06964 24 LLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADADEGGK 103 (342)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhhcccc
Confidence 47999999999999999999885421 112111000 00
Q ss_pred ----c-cchHHHHHHHHHHHHH----hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEe
Q psy4538 38 ----W-YGEGEKMVRALFAVAS----VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGA 108 (343)
Q Consensus 38 ----~-~~~~~~~l~~~~~~~~----~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~ 108 (343)
. ..-.-..++.+..... .....|++||++|.+- ....+.|+..++.. ...+++|.+
T Consensus 104 k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~-----------~~AaNaLLKtLEEP----p~~t~fiL~ 168 (342)
T PRK06964 104 KTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN-----------VAAANALLKTLEEP----PPGTVFLLV 168 (342)
T ss_pred cccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC-----------HHHHHHHHHHhcCC----CcCcEEEEE
Confidence 0 0011233444444332 2335699999999883 34567788888864 667888889
Q ss_pred cCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHH
Q psy4538 109 TNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTK 143 (343)
Q Consensus 109 tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~ 143 (343)
|+.++.+.+.++||+. .+.|++|+.++..+.+..
T Consensus 169 t~~~~~LLpTI~SRcq-~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 169 SARIDRLLPTILSRCR-QFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred ECChhhCcHHHHhcCE-EEEecCCCHHHHHHHHHH
Confidence 9999999999999995 899999999988887765
No 215
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=7.6e-09 Score=94.64 Aligned_cols=146 Identities=14% Similarity=0.091 Sum_probs=94.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc------------------------EEEEecccccccccchHHHHHHHHHHHHH--
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT------------------------FFCISASTLTSKWYGEGEKMVRALFAVAS-- 54 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~------------------------~~~v~~~~l~~~~~~~~~~~l~~~~~~~~-- 54 (343)
+||+||+|+||+++|+.+|+.+.+. +..+... +.. -....++.+.....
T Consensus 31 ~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~ 105 (329)
T PRK08058 31 YLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKS 105 (329)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhC
Confidence 4899999999999999999987432 1111111 000 11223444443332
Q ss_pred --hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 55 --VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 55 --~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
.....|++|||+|.+- ....+.|+..++.. ...+++|.+|+.+..+.+.+++|+. .++|++|
T Consensus 106 ~~~~~~kvviI~~a~~~~-----------~~a~NaLLK~LEEP----p~~~~~Il~t~~~~~ll~TIrSRc~-~i~~~~~ 169 (329)
T PRK08058 106 GVESNKKVYIIEHADKMT-----------ASAANSLLKFLEEP----SGGTTAILLTENKHQILPTILSRCQ-VVEFRPL 169 (329)
T ss_pred CcccCceEEEeehHhhhC-----------HHHHHHHHHHhcCC----CCCceEEEEeCChHhCcHHHHhhce-eeeCCCC
Confidence 2345699999999772 34556788888874 4456677788888899999999997 8999999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHH
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASL 175 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l 175 (343)
+.++..+.++. .+ .+......++.. .| ++.....+
T Consensus 170 ~~~~~~~~L~~----~g--i~~~~~~~l~~~-~g-~~~~A~~l 204 (329)
T PRK08058 170 PPESLIQRLQE----EG--ISESLATLLAGL-TN-SVEEALAL 204 (329)
T ss_pred CHHHHHHHHHH----cC--CChHHHHHHHHH-cC-CHHHHHHH
Confidence 99887666653 22 444444445544 34 45444433
No 216
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=8.5e-09 Score=93.11 Aligned_cols=146 Identities=18% Similarity=0.225 Sum_probs=95.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc---------------------EEEEe--cccccccc-cchHHHHHHHHHHHHHh-
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT---------------------FFCIS--ASTLTSKW-YGEGEKMVRALFAVASV- 55 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~---------------------~~~v~--~~~l~~~~-~~~~~~~l~~~~~~~~~- 55 (343)
+||+||+|+||+++|.++|+.+-+. ++.+. +..-..+. ..-.-..++.+.+....
T Consensus 29 ~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~ 108 (319)
T PRK08769 29 LLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKLALT 108 (319)
T ss_pred EeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHHhhC
Confidence 4899999999999999999877432 11121 10000000 00112334544443322
Q ss_pred ---cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 56 ---HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 56 ---~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
....|++||++|.+- ....+.|+..++.. ...+++|.+++.++.+-+.++||+. .+.|++|
T Consensus 109 p~~g~~kV~iI~~ae~m~-----------~~AaNaLLKtLEEP----p~~~~fiL~~~~~~~lLpTIrSRCq-~i~~~~~ 172 (319)
T PRK08769 109 PQYGIAQVVIVDPADAIN-----------RAACNALLKTLEEP----SPGRYLWLISAQPARLPATIRSRCQ-RLEFKLP 172 (319)
T ss_pred cccCCcEEEEeccHhhhC-----------HHHHHHHHHHhhCC----CCCCeEEEEECChhhCchHHHhhhe-EeeCCCc
Confidence 234699999999882 34567788888875 4456777788889999999999997 8899999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCC
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFS 168 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s 168 (343)
+.++..+.+... ..+......++..+.|-.
T Consensus 173 ~~~~~~~~L~~~------~~~~~~a~~~~~l~~G~p 202 (319)
T PRK08769 173 PAHEALAWLLAQ------GVSERAAQEALDAARGHP 202 (319)
T ss_pred CHHHHHHHHHHc------CCChHHHHHHHHHcCCCH
Confidence 998877766531 234444556666666543
No 217
>KOG2227|consensus
Probab=98.99 E-value=1.2e-08 Score=93.64 Aligned_cols=200 Identities=21% Similarity=0.235 Sum_probs=123.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC-----CcEEEEeccccccc----------c----cc-hHHHHHHHHHHHH-Hhc-CC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK-----ATFFCISASTLTSK----------W----YG-EGEKMVRALFAVA-SVH-QP 58 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~-----~~~~~v~~~~l~~~----------~----~~-~~~~~l~~~~~~~-~~~-~p 58 (343)
++++|-||||||.+...+-...+ ...+++||..+... + .+ .........|..- ... .+
T Consensus 178 lYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~ 257 (529)
T KOG2227|consen 178 LYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFM 257 (529)
T ss_pred eEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccce
Confidence 47899999999998887755542 24578888764321 0 00 1111122223222 222 36
Q ss_pred cEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh---cc---ceEEEEcCC
Q psy4538 59 SIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR---RL---VKRLYIPLP 132 (343)
Q Consensus 59 ~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~---rf---~~~i~~~~P 132 (343)
-++++||+|.|....+. .+..+..+...++.++++||.+|..+.-|..+-+ +. ...+.|++|
T Consensus 258 ~llVlDEmD~L~tr~~~------------vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PY 325 (529)
T KOG2227|consen 258 LLLVLDEMDHLITRSQT------------VLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPY 325 (529)
T ss_pred EEEEechhhHHhhcccc------------eeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCC
Confidence 68999999999744322 4445555666678899999999998877766655 22 267899999
Q ss_pred CHHHHHHHHHHHHhhhCCCC-ChhhHHHHHHHCCCCCHHHHHHH---HHHHhcccccccccc-------cccccCCcccC
Q psy4538 133 DEQARCEIVTKLLRNITNSL-TVDDIEEVGRMTTDFSGADMASL---CREASLGPVRSIDLS-------RIDALDVRPIS 201 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~-~~~~~~~la~~t~g~s~~dl~~l---~~~a~~~a~~~~~~~-------~~~~~~~~~i~ 201 (343)
+.++..+|++..+....... -...++..|+...|.+| |++.+ |+.|...+....... ........+|.
T Consensus 326 Tk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRkaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~ 404 (529)
T KOG2227|consen 326 TKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRKALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVG 404 (529)
T ss_pred CHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccc
Confidence 99999999999988764333 22367888888887766 77655 444433222211000 00111124455
Q ss_pred hhHHHHHHHhcC
Q psy4538 202 IDDFRDALKTVR 213 (343)
Q Consensus 202 ~~d~~~a~~~~~ 213 (343)
.+++..++..+.
T Consensus 405 ~~~va~viSk~~ 416 (529)
T KOG2227|consen 405 VEHVAAVISKVD 416 (529)
T ss_pred hHHHHHHhhhhc
Confidence 677777776654
No 218
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.96 E-value=1e-08 Score=98.21 Aligned_cols=68 Identities=16% Similarity=0.254 Sum_probs=44.7
Q ss_pred CCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCC---------CCCCCcEEEEEecCCC-----c---------
Q psy4538 57 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAS---------TLDDDLVLVIGATNRP-----Q--------- 113 (343)
Q Consensus 57 ~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~v~vi~~tn~~-----~--------- 113 (343)
..++|||||++.+. ...+..|...|+... ......+.+|+++|.. .
T Consensus 295 ~~GvLfLDEi~e~~-----------~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~ 363 (499)
T TIGR00368 295 HNGVLFLDELPEFK-----------RSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCS 363 (499)
T ss_pred CCCeEecCChhhCC-----------HHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCC
Confidence 46799999999763 233344444443221 1113467888888763 1
Q ss_pred ---------hhhHHHHhccceEEEEcCCCHH
Q psy4538 114 ---------ELDEAARRRLVKRLYIPLPDEQ 135 (343)
Q Consensus 114 ---------~l~~~l~~rf~~~i~~~~P~~~ 135 (343)
.+...+++||+..+.++.++..
T Consensus 364 ~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 364 PQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred HHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 4778899999999999876544
No 219
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.96 E-value=2.1e-08 Score=96.70 Aligned_cols=167 Identities=21% Similarity=0.264 Sum_probs=98.7
Q ss_pred CEEeCCCCchHHHHHHHHHHH-----------cCCcEEEEeccccccccc-----chHHH--------HHHHHHHHHHhc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ-----------CKATFFCISASTLTSKWY-----GEGEK--------MVRALFAVASVH 56 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~-----------l~~~~~~v~~~~l~~~~~-----~~~~~--------~l~~~~~~~~~~ 56 (343)
|||+|++||||+++|+++-+. .+.||+.+||..+..... |..+. .-..+|+. .
T Consensus 245 VLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~---A 321 (538)
T PRK15424 245 VLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI---A 321 (538)
T ss_pred EEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchhc---c
Confidence 689999999999999999876 357999999987643211 10000 00112222 2
Q ss_pred CCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCC-------CCCCcEEEEEecCCCc-h------hhHHHHhc
Q psy4538 57 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAST-------LDDDLVLVIGATNRPQ-E------LDEAARRR 122 (343)
Q Consensus 57 ~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~v~vi~~tn~~~-~------l~~~l~~r 122 (343)
..+.|||||++.|. ...+..|+..++.... .-...+.+|++|+..- . +.+.+..|
T Consensus 322 ~gGTLfLdeI~~Lp-----------~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yr 390 (538)
T PRK15424 322 HGGTLFLDEIGEMP-----------LPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYR 390 (538)
T ss_pred CCCEEEEcChHhCC-----------HHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHH
Confidence 36789999999883 2344455555543221 0122457888876532 1 22233334
Q ss_pred cceEEEEcCCCHHHHH----HHHHHHHhh----hCCCCChhhH-------HHHHHHCCCCCHHHHHHHHHHHhcc
Q psy4538 123 LVKRLYIPLPDEQARC----EIVTKLLRN----ITNSLTVDDI-------EEVGRMTTDFSGADMASLCREASLG 182 (343)
Q Consensus 123 f~~~i~~~~P~~~er~----~il~~~l~~----~~~~~~~~~~-------~~la~~t~g~s~~dl~~l~~~a~~~ 182 (343)
+. .+.+..|...+|. .++++++++ ....++.+.+ ..|..+..-.+.++|+++++.++..
T Consensus 391 L~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 391 LS-ILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred hc-CCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 44 3455555555554 445566554 3334555443 4555555666889999999988764
No 220
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.96 E-value=2e-08 Score=98.71 Aligned_cols=101 Identities=19% Similarity=0.217 Sum_probs=65.6
Q ss_pred cEEEEEecCCC--chhhHHHHhccc---eEEEEcC--C-CHHHHHHHHHHHHh---hh--CCCCChhhHHHHHHHCC---
Q psy4538 102 LVLVIGATNRP--QELDEAARRRLV---KRLYIPL--P-DEQARCEIVTKLLR---NI--TNSLTVDDIEEVGRMTT--- 165 (343)
Q Consensus 102 ~v~vi~~tn~~--~~l~~~l~~rf~---~~i~~~~--P-~~~er~~il~~~l~---~~--~~~~~~~~~~~la~~t~--- 165 (343)
.+.+|+++|.. ..+++.+++||. ..+.++. | +.+.+.++++...+ .. ...++++.+..+.+...
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~a 347 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRA 347 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHH
Confidence 56788888764 578999999998 6666643 3 45566555554333 22 23567777777664311
Q ss_pred ------CCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHh
Q psy4538 166 ------DFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKT 211 (343)
Q Consensus 166 ------g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 211 (343)
..+.++|.++++.|...|..+ ....|+.+|+.+|++.
T Consensus 348 g~r~~lsl~~R~L~~llR~A~~iA~~~---------~~~~I~~ehV~~Ai~~ 390 (608)
T TIGR00764 348 GRKDHLTLRLRELGGLVRAAGDIAKSS---------GKVYVTAEHVLKAKKL 390 (608)
T ss_pred hcccccCCCHHHHHHHHHHHHHHHHhc---------CCceecHHHHHHHHHH
Confidence 135789999999985444322 3356999999887663
No 221
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.95 E-value=2.7e-08 Score=96.49 Aligned_cols=170 Identities=19% Similarity=0.227 Sum_probs=106.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccccccccc-----chHHH-------HHHHHHHHHHhcCCcEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWY-----GEGEK-------MVRALFAVASVHQPSIIFIDE 65 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~-----~~~~~-------~l~~~~~~~~~~~p~vl~iDe 65 (343)
|||+|++||||+++|+++.... +.+|+.++|..+..... |.... .....|.. ..++.|||||
T Consensus 213 VlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~---a~gGtL~lde 289 (509)
T PRK05022 213 VLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFEL---ADGGTLFLDE 289 (509)
T ss_pred EEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchhh---cCCCEEEecC
Confidence 6899999999999999998875 57999999988743211 00000 00011222 3467899999
Q ss_pred cccccccCCCCchhHHHHHHHHHHHhhccCCC-------CCCCcEEEEEecCCCc-------hhhHHHHhccceEEEEcC
Q psy4538 66 IDSLLCQRSDQENETSRRLKTEFLISLDGAST-------LDDDLVLVIGATNRPQ-------ELDEAARRRLVKRLYIPL 131 (343)
Q Consensus 66 id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~v~vi~~tn~~~-------~l~~~l~~rf~~~i~~~~ 131 (343)
+|.|. ...+..++..++.... .....+.+|++|+..- .+.+.+..|+. .+.+..
T Consensus 290 I~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~-~~~i~l 357 (509)
T PRK05022 290 IGELP-----------LALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLS-VFPLSV 357 (509)
T ss_pred hhhCC-----------HHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHhccc-ccEeeC
Confidence 99884 2334445555543211 1123567888886632 23444544554 344555
Q ss_pred CCHHHHH----HHHHHHHhhh-------CCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhccccc
Q psy4538 132 PDEQARC----EIVTKLLRNI-------TNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVR 185 (343)
Q Consensus 132 P~~~er~----~il~~~l~~~-------~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~ 185 (343)
|...+|. .++++++.+. ...++++.+..|..+..-.+.++|+++++.++..+..
T Consensus 358 PpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 358 PPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLARA 422 (509)
T ss_pred CCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcCC
Confidence 5555554 3444444332 2457888999999988888999999999998776643
No 222
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.95 E-value=3.5e-09 Score=97.23 Aligned_cols=171 Identities=18% Similarity=0.224 Sum_probs=101.9
Q ss_pred CEEeCCCCchHHHHHHHHHHH----cCCcEEEEecccccccccchH------------HHHHHHHHHHHHhcCCcEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ----CKATFFCISASTLTSKWYGEG------------EKMVRALFAVASVHQPSIIFID 64 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~----l~~~~~~v~~~~l~~~~~~~~------------~~~l~~~~~~~~~~~p~vl~iD 64 (343)
||++|++||||+.+|+.+... .+.||+.+||..+........ ...-..+|+.+ ..+.||+|
T Consensus 104 vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A---~GGtLfLD 180 (403)
T COG1221 104 VLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQA---NGGTLFLD 180 (403)
T ss_pred EEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchheec---CCCEEehh
Confidence 689999999999999998543 367999999988754422100 00111222222 36799999
Q ss_pred ccccccccCCCCchhHHHHHHHHHHHhhccCC-------CCCCCcEEEEEecCC--CchhhH--HHHh-ccceEEEEcCC
Q psy4538 65 EIDSLLCQRSDQENETSRRLKTEFLISLDGAS-------TLDDDLVLVIGATNR--PQELDE--AARR-RLVKRLYIPLP 132 (343)
Q Consensus 65 eid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~~v~vi~~tn~--~~~l~~--~l~~-rf~~~i~~~~P 132 (343)
|++.+-+ ..+..++..++... ......|.+|++|+. ...+-. .+.+ ++...|.+|+.
T Consensus 181 EI~~LP~-----------~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpL 249 (403)
T COG1221 181 EIHRLPP-----------EGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPPL 249 (403)
T ss_pred hhhhCCH-----------hHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCceecCCCh
Confidence 9998843 23344555555421 123445778887754 222322 3333 55555666554
Q ss_pred CH--HHHHHHHHHHHhh----hCCCC---ChhhHHHHHHHCCCCCHHHHHHHHHHHhccccc
Q psy4538 133 DE--QARCEIVTKLLRN----ITNSL---TVDDIEEVGRMTTDFSGADMASLCREASLGPVR 185 (343)
Q Consensus 133 ~~--~er~~il~~~l~~----~~~~~---~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~ 185 (343)
.+ +++..+++++++. .+... +++.+..|.....--+.+++++++..++..+..
T Consensus 250 rER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 250 RERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQASG 311 (403)
T ss_pred hhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHhcc
Confidence 33 3334445555543 33322 334566666665556889999999999877743
No 223
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.95 E-value=1.4e-08 Score=102.01 Aligned_cols=167 Identities=22% Similarity=0.350 Sum_probs=104.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccc-----cch--------HHHHHHHHHHHHHhcCCcEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKW-----YGE--------GEKMVRALFAVASVHQPSIIFID 64 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~-----~~~--------~~~~l~~~~~~~~~~~p~vl~iD 64 (343)
|||+|++|||||++|+++.... +.+++.++|..+.... .|. ..... ..+.. ..++.||||
T Consensus 402 VLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~-g~le~---a~~GtL~Ld 477 (686)
T PRK15429 402 VLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRI-GRFEL---ADKSSLFLD 477 (686)
T ss_pred EEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccchh-hHHHh---cCCCeEEEe
Confidence 6899999999999999998765 5799999998763221 110 01111 12222 346799999
Q ss_pred ccccccccCCCCchhHHHHHHHHHHHhhccCC-------CCCCCcEEEEEecCCCc-------hhhHHHHhccceEEEEc
Q psy4538 65 EIDSLLCQRSDQENETSRRLKTEFLISLDGAS-------TLDDDLVLVIGATNRPQ-------ELDEAARRRLVKRLYIP 130 (343)
Q Consensus 65 eid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~~v~vi~~tn~~~-------~l~~~l~~rf~~~i~~~ 130 (343)
|++.+. ......++..++... ......+.+|++|+..- .+...+..|+. .+.+.
T Consensus 478 ei~~L~-----------~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~-~~~i~ 545 (686)
T PRK15429 478 EVGDMP-----------LELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN-VFPIH 545 (686)
T ss_pred chhhCC-----------HHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccC-eeEEe
Confidence 999873 233444555443321 11124577888886532 12233444544 45566
Q ss_pred CCCHHHHHH----HHHHHHhhh----C---CCCChhhHHHHHHHCCCCCHHHHHHHHHHHhccc
Q psy4538 131 LPDEQARCE----IVTKLLRNI----T---NSLTVDDIEEVGRMTTDFSGADMASLCREASLGP 183 (343)
Q Consensus 131 ~P~~~er~~----il~~~l~~~----~---~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a 183 (343)
.|...+|.+ ++++++.++ + ..++++.+..|..+..-.+.++|+++++.++..+
T Consensus 546 lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 546 LPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred CCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 666666644 445554432 2 1368888999998887789999999999987654
No 224
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.95 E-value=1.6e-08 Score=99.01 Aligned_cols=165 Identities=11% Similarity=0.161 Sum_probs=92.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE-Eecc---cccccc------------cchHHHHHHHHHHHHH----------
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC-ISAS---TLTSKW------------YGEGEKMVRALFAVAS---------- 54 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~-v~~~---~l~~~~------------~~~~~~~l~~~~~~~~---------- 54 (343)
++|+||||+|||++++.+|++++..+++ .++. .....+ .......+..++..+.
T Consensus 113 llL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~ 192 (637)
T TIGR00602 113 LLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDL 192 (637)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhccccccc
Confidence 4799999999999999999999876544 2211 000000 0111223333333332
Q ss_pred hcCCcEEEecccccccccCCCCchhHHHHHHHHHHH-hhccCCCCCCCcEEEEEecCCCc--------------hhhHHH
Q psy4538 55 VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLI-SLDGASTLDDDLVLVIGATNRPQ--------------ELDEAA 119 (343)
Q Consensus 55 ~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~-~l~~~~~~~~~~v~vi~~tn~~~--------------~l~~~l 119 (343)
.....||+|||++.++... .+.+..++. .... ....++++| ++..+. .+.+++
T Consensus 193 ~~~~~IILIDEiPn~~~r~--------~~~lq~lLr~~~~e---~~~~pLI~I-~TE~~~~~~~~~~~~f~~~~lL~~eL 260 (637)
T TIGR00602 193 MTDKKIILVEDLPNQFYRD--------TRALHEILRWKYVS---IGRCPLVFI-ITESLEGDNNQRRLLFPAETIMNKEI 260 (637)
T ss_pred CCceeEEEeecchhhchhh--------HHHHHHHHHHHhhc---CCCceEEEE-ecCCccccccccccccchhcccCHhH
Confidence 1346799999999876321 122333333 2111 112223333 332111 133677
Q ss_pred Hhccc-eEEEEcCCCHHHHHHHHHHHHhhhCCC------C-ChhhHHHHHHHCCCCCHHHHHHHHHHHhc
Q psy4538 120 RRRLV-KRLYIPLPDEQARCEIVTKLLRNITNS------L-TVDDIEEVGRMTTDFSGADMASLCREASL 181 (343)
Q Consensus 120 ~~rf~-~~i~~~~P~~~er~~il~~~l~~~~~~------~-~~~~~~~la~~t~g~s~~dl~~l~~~a~~ 181 (343)
+++.. ..|.|.+.+..+..+.|+..+...... . +++.+..++.... +|++.+++.-..
T Consensus 261 ls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~----GDiRsAIn~LQf 326 (637)
T TIGR00602 261 LEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCS----GDIRSAINSLQF 326 (637)
T ss_pred hcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCC----ChHHHHHHHHHH
Confidence 76332 379999999999888888888754221 1 3457777877555 477777665443
No 225
>PRK08116 hypothetical protein; Validated
Probab=98.94 E-value=4.4e-09 Score=93.27 Aligned_cols=126 Identities=19% Similarity=0.294 Sum_probs=70.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccch----HHHHHHHHHHHHHhcCCcEEEecccccccccC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGE----GEKMVRALFAVASVHQPSIIFIDEIDSLLCQR 73 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~----~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~ 73 (343)
++|+|++|||||+||.++++++ +.+++.++..++....... .......++... ....+|+|||++.-.
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~e~--- 191 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGAER--- 191 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccCCC---
Confidence 5899999999999999999986 7788888887765432211 011112222222 345699999996421
Q ss_pred CCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCC-ch----hhHHHHhcc---ceEEEEcCCCHHHHHHHHH
Q psy4538 74 SDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRP-QE----LDEAARRRL---VKRLYIPLPDEQARCEIVT 142 (343)
Q Consensus 74 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~-~~----l~~~l~~rf---~~~i~~~~P~~~er~~il~ 142 (343)
..+... ..+...++.... .. ..+|.|||.+ .. ++..+.+|+ ...|.+..|+. |..+.+
T Consensus 192 ---~t~~~~---~~l~~iin~r~~--~~-~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~--R~~~~~ 257 (268)
T PRK08116 192 ---DTEWAR---EKVYNIIDSRYR--KG-LPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY--RKEIAK 257 (268)
T ss_pred ---CCHHHH---HHHHHHHHHHHH--CC-CCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh--hHHHHH
Confidence 112222 233333332211 11 2355566654 33 355677775 23466666664 444443
No 226
>KOG0745|consensus
Probab=98.93 E-value=5.8e-09 Score=94.66 Aligned_cols=133 Identities=29% Similarity=0.456 Sum_probs=89.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccc-ccccchH-HHHHHHHHHHHH----hcCCcEEEecccccccccCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLT-SKWYGEG-EKMVRALFAVAS----VHQPSIIFIDEIDSLLCQRS 74 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~-~~~~~~~-~~~l~~~~~~~~----~~~p~vl~iDeid~l~~~~~ 74 (343)
|||.||+|+|||.||+.+|+-+++||...+|..+. ..|+|+. +..+..++..|. ..+..|+||||+|++..+..
T Consensus 229 vLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~~ 308 (564)
T KOG0745|consen 229 VLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKAE 308 (564)
T ss_pred EEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccCc
Confidence 68999999999999999999999999999999886 4566664 566777776552 34567999999999974322
Q ss_pred C---CchhHHHHHHHHHHHhhccCCC---------CCC--------CcEEEEEecCCCchhhHHHHhccc-eEEEEcCCC
Q psy4538 75 D---QENETSRRLKTEFLISLDGAST---------LDD--------DLVLVIGATNRPQELDEAARRRLV-KRLYIPLPD 133 (343)
Q Consensus 75 ~---~~~~~~~~~~~~ll~~l~~~~~---------~~~--------~~v~vi~~tn~~~~l~~~l~~rf~-~~i~~~~P~ 133 (343)
. ..+-....+.+.||..+++..- .+. ..|++|+.- .-..|+..+-+|.+ ..+-|..|+
T Consensus 309 ~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasG-AF~~Ldk~I~rR~~d~slGFg~~s 387 (564)
T KOG0745|consen 309 SIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASG-AFVGLDKIISRRLDDKSLGFGAPS 387 (564)
T ss_pred cccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecc-cccchHHHHHHhhcchhcccCCCC
Confidence 1 1122234566777777764311 111 223444332 22456766766665 456777775
Q ss_pred H
Q psy4538 134 E 134 (343)
Q Consensus 134 ~ 134 (343)
-
T Consensus 388 ~ 388 (564)
T KOG0745|consen 388 S 388 (564)
T ss_pred C
Confidence 4
No 227
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.93 E-value=2.3e-08 Score=97.04 Aligned_cols=168 Identities=20% Similarity=0.236 Sum_probs=102.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccccccccc-----chHH-------HHHHHHHHHHHhcCCcEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWY-----GEGE-------KMVRALFAVASVHQPSIIFIDE 65 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~-----~~~~-------~~l~~~~~~~~~~~p~vl~iDe 65 (343)
|||+|++||||+++|+++-... +.+|+.++|..+..... |... .....+|.. ..++.|||||
T Consensus 230 vlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~---a~~GtL~Lde 306 (520)
T PRK10820 230 LLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQ---ANGGSVLLDE 306 (520)
T ss_pred EEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhh---cCCCEEEEeC
Confidence 6899999999999999986544 46899999988643211 1000 000112222 2367899999
Q ss_pred cccccccCCCCchhHHHHHHHHHHHhhccCCC-------CCCCcEEEEEecCCCc-------hhhHHHHhccceEEEEcC
Q psy4538 66 IDSLLCQRSDQENETSRRLKTEFLISLDGAST-------LDDDLVLVIGATNRPQ-------ELDEAARRRLVKRLYIPL 131 (343)
Q Consensus 66 id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~v~vi~~tn~~~-------~l~~~l~~rf~~~i~~~~ 131 (343)
++.+. ......++..++.... .....+.+|++|+..- .+.+.+..|+. .+.+..
T Consensus 307 I~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~-~~~i~l 374 (520)
T PRK10820 307 IGEMS-----------PRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLN-VLTLNL 374 (520)
T ss_pred hhhCC-----------HHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcC-eeEEeC
Confidence 99883 2333445555543211 0123467787775532 23455666765 345555
Q ss_pred CCHHHHH----HHHHHHHh----hhC---CCCChhhHHHHHHHCCCCCHHHHHHHHHHHhccc
Q psy4538 132 PDEQARC----EIVTKLLR----NIT---NSLTVDDIEEVGRMTTDFSGADMASLCREASLGP 183 (343)
Q Consensus 132 P~~~er~----~il~~~l~----~~~---~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a 183 (343)
|...+|. .++.+++. +.+ ..++++.+..|..+....+.++|++++..|...+
T Consensus 375 PpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~~ 437 (520)
T PRK10820 375 PPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQL 437 (520)
T ss_pred CCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC
Confidence 5554444 33344443 222 3578888899988877679999999999887654
No 228
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.93 E-value=1e-08 Score=83.95 Aligned_cols=113 Identities=22% Similarity=0.327 Sum_probs=75.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC-----------------------cEEEEecccccccccchHHHHHHHHHHHHHh--
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA-----------------------TFFCISASTLTSKWYGEGEKMVRALFAVASV-- 55 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~-----------------------~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~-- 55 (343)
+||+||+|+||+++|+++|+.+-. .++.++....... -....++.+......
T Consensus 22 ~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~---i~i~~ir~i~~~~~~~~ 98 (162)
T PF13177_consen 22 LLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKS---IKIDQIREIIEFLSLSP 98 (162)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSS---BSHHHHHHHHHHCTSS-
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccch---hhHHHHHHHHHHHHHHH
Confidence 489999999999999999998732 1333332221111 122344555444322
Q ss_pred --cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 56 --HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 56 --~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
....|++||++|.+ .....+.|+..|+.. ...+.+|.+|+.+..+-+.++||+. .+.+++.
T Consensus 99 ~~~~~KviiI~~ad~l-----------~~~a~NaLLK~LEep----p~~~~fiL~t~~~~~il~TI~SRc~-~i~~~~l 161 (162)
T PF13177_consen 99 SEGKYKVIIIDEADKL-----------TEEAQNALLKTLEEP----PENTYFILITNNPSKILPTIRSRCQ-VIRFRPL 161 (162)
T ss_dssp TTSSSEEEEEETGGGS------------HHHHHHHHHHHHST----TTTEEEEEEES-GGGS-HHHHTTSE-EEEE---
T ss_pred hcCCceEEEeehHhhh-----------hHHHHHHHHHHhcCC----CCCEEEEEEECChHHChHHHHhhce-EEecCCC
Confidence 34679999999987 346678899999876 4568888899999999999999997 6776653
No 229
>KOG0990|consensus
Probab=98.93 E-value=4.9e-09 Score=91.82 Aligned_cols=156 Identities=19% Similarity=0.261 Sum_probs=104.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc------EEEEecccccccccchHHHHHHHHHHHHHh-------cCCcEEEecccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT------FFCISASTLTSKWYGEGEKMVRALFAVASV-------HQPSIIFIDEID 67 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~------~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~-------~~p~vl~iDeid 67 (343)
+|+|||||+|||+...+.|..+-.+ +.++++++-.+. ...+..-..|...+. ..+..+++||+|
T Consensus 65 ~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgi---d~vr~qi~~fast~~~~~fst~~~fKlvILDEAD 141 (360)
T KOG0990|consen 65 LLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGI---DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEAD 141 (360)
T ss_pred ccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCC---cchHHHHHHHHhhccceeccccCceeEEEecchh
Confidence 5899999999999999999988553 223344333222 112222233443331 257799999999
Q ss_pred cccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhh
Q psy4538 68 SLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRN 147 (343)
Q Consensus 68 ~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~ 147 (343)
.+. ....+.+-+.++... .++.+...+|.+..+.+++++||. .+.+.+-+..+....+.+.++.
T Consensus 142 aMT-----------~~AQnALRRviek~t----~n~rF~ii~n~~~ki~pa~qsRct-rfrf~pl~~~~~~~r~shi~e~ 205 (360)
T KOG0990|consen 142 AMT-----------RDAQNALRRVIEKYT----ANTRFATISNPPQKIHPAQQSRCT-RFRFAPLTMAQQTERQSHIRES 205 (360)
T ss_pred Hhh-----------HHHHHHHHHHHHHhc----cceEEEEeccChhhcCchhhcccc-cCCCCCCChhhhhhHHHHHHhc
Confidence 773 334444444444442 234455678999999999999997 7778888888888888888887
Q ss_pred hCCCCChhhHHHHHHHCCCCCHHHHHHHHHHH
Q psy4538 148 ITNSLTVDDIEEVGRMTTDFSGADMASLCREA 179 (343)
Q Consensus 148 ~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a 179 (343)
.....+++....++..+. +|++.+++..
T Consensus 206 e~~~~~~~~~~a~~r~s~----gDmr~a~n~L 233 (360)
T KOG0990|consen 206 EQKETNPEGYSALGRLSV----GDMRVALNYL 233 (360)
T ss_pred chhhcCHHHHHHHHHHhH----HHHHHHHHHH
Confidence 777777777777777544 5777666543
No 230
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.93 E-value=9e-10 Score=84.60 Aligned_cols=110 Identities=26% Similarity=0.331 Sum_probs=58.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecc-ccc-ccccch-----HHHHHHHHHHHHHhcCCcEEEecccccccccC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISAS-TLT-SKWYGE-----GEKMVRALFAVASVHQPSIIFIDEIDSLLCQR 73 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~-~l~-~~~~~~-----~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~ 73 (343)
+||.|+||+|||++|+++|+.++..|..+.+. ++. +...|. ..... -|...- --..|+++||+...
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f--~~~~GP-if~~ill~DEiNra---- 74 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEF--EFRPGP-IFTNILLADEINRA---- 74 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEE--EEEE-T-T-SSEEEEETGGGS----
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCee--EeecCh-hhhceeeecccccC----
Confidence 58999999999999999999999999888663 221 111110 00000 000000 01249999999865
Q ss_pred CCCchhHHHHHHHHHHHhhccCCC-------CCCCcEEEEEecCCCc-----hhhHHHHhccc
Q psy4538 74 SDQENETSRRLKTEFLISLDGAST-------LDDDLVLVIGATNRPQ-----ELDEAARRRLV 124 (343)
Q Consensus 74 ~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~v~vi~~tn~~~-----~l~~~l~~rf~ 124 (343)
..+.++.++..|....- .-..+++||+|.|+.+ .++++++.||.
T Consensus 75 -------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 75 -------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp --------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred -------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 34556667766654322 1245688899988866 78888888884
No 231
>KOG1942|consensus
Probab=98.91 E-value=2.7e-08 Score=86.16 Aligned_cols=89 Identities=16% Similarity=0.137 Sum_probs=63.2
Q ss_pred CchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhccccccccccc
Q psy4538 112 PQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSR 191 (343)
Q Consensus 112 ~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~ 191 (343)
|..+++.++.|.- .|..-+++.++.++|++...+..+..++++.+..++.....-+.+...+++.-|...|-..
T Consensus 348 PhGip~dllDRl~-Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~----- 421 (456)
T KOG1942|consen 348 PHGIPPDLLDRLL-IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTN----- 421 (456)
T ss_pred CCCCCHHHhhhee-EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHc-----
Confidence 5678888998885 6777778889999999999998888999999999998776666666555554443333221
Q ss_pred ccccCCcccChhHHHHHHH
Q psy4538 192 IDALDVRPISIDDFRDALK 210 (343)
Q Consensus 192 ~~~~~~~~i~~~d~~~a~~ 210 (343)
+...|..+|+.+...
T Consensus 422 ----g~~~i~v~dvee~~~ 436 (456)
T KOG1942|consen 422 ----GRKEISVEDVEEVTE 436 (456)
T ss_pred ----CCceeecccHHHHHH
Confidence 233466666655443
No 232
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=1.8e-08 Score=90.94 Aligned_cols=124 Identities=14% Similarity=0.143 Sum_probs=87.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc-----------------------EEEEecccccccccchHHHHHHHHHHHHH---
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT-----------------------FFCISASTLTSKWYGEGEKMVRALFAVAS--- 54 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~-----------------------~~~v~~~~l~~~~~~~~~~~l~~~~~~~~--- 54 (343)
+||+||.|+||+++|+++|+.+-+. ++.+.+..- ++. -....++.+.....
T Consensus 28 ~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~~--I~vdqiR~l~~~~~~~~ 104 (319)
T PRK06090 28 LLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE-GKS--ITVEQIRQCNRLAQESS 104 (319)
T ss_pred EeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC-CCc--CCHHHHHHHHHHHhhCc
Confidence 4899999999999999999977331 222222110 000 11223444433332
Q ss_pred -hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCC
Q psy4538 55 -VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPD 133 (343)
Q Consensus 55 -~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~ 133 (343)
.....|++||++|.+- ....+.|+..++.. ..++++|.+|+.++.+-|.++||+. .+.|++|+
T Consensus 105 ~~~~~kV~iI~~ae~m~-----------~~AaNaLLKtLEEP----p~~t~fiL~t~~~~~lLpTI~SRCq-~~~~~~~~ 168 (319)
T PRK06090 105 QLNGYRLFVIEPADAMN-----------ESASNALLKTLEEP----APNCLFLLVTHNQKRLLPTIVSRCQ-QWVVTPPS 168 (319)
T ss_pred ccCCceEEEecchhhhC-----------HHHHHHHHHHhcCC----CCCeEEEEEECChhhChHHHHhcce-eEeCCCCC
Confidence 2335799999999872 34567788888875 5567888889999999999999997 88999999
Q ss_pred HHHHHHHHHH
Q psy4538 134 EQARCEIVTK 143 (343)
Q Consensus 134 ~~er~~il~~ 143 (343)
.++..+.+..
T Consensus 169 ~~~~~~~L~~ 178 (319)
T PRK06090 169 TAQAMQWLKG 178 (319)
T ss_pred HHHHHHHHHH
Confidence 9888777653
No 233
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.91 E-value=1.5e-08 Score=94.74 Aligned_cols=170 Identities=19% Similarity=0.289 Sum_probs=109.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccccccccc-----chHH----H---HHHHHHHHHHhcCCcEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWY-----GEGE----K---MVRALFAVASVHQPSIIFIDE 65 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~-----~~~~----~---~l~~~~~~~~~~~p~vl~iDe 65 (343)
|||+|++||||..+|+++-... +.||+.+||..+..... |..+ . .-...|+. .+.+.|||||
T Consensus 167 VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~---A~GGTLfLDE 243 (464)
T COG2204 167 VLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQ---ANGGTLFLDE 243 (464)
T ss_pred EEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccCcceeE---cCCceEEeec
Confidence 6899999999999999998766 46999999987643311 1000 0 00112222 2467999999
Q ss_pred cccccccCCCCchhHHHHHHHHHHHhhccCCC-------CCCCcEEEEEecCCCc-------hhhHHHHhccceEEEEcC
Q psy4538 66 IDSLLCQRSDQENETSRRLKTEFLISLDGAST-------LDDDLVLVIGATNRPQ-------ELDEAARRRLVKRLYIPL 131 (343)
Q Consensus 66 id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~v~vi~~tn~~~-------~l~~~l~~rf~~~i~~~~ 131 (343)
|..+. ..++..|++.++.-.. .-.-.|-||++||..- ..-+.+.-|+. ++.+..
T Consensus 244 I~~mp-----------l~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLn-V~~i~i 311 (464)
T COG2204 244 IGEMP-----------LELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLN-VVPLRL 311 (464)
T ss_pred cccCC-----------HHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhc-cceecC
Confidence 99873 3445556666553221 1233578999998621 12233333554 566777
Q ss_pred CCHHHHHH----HHHHHHhh----h---CCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhccccc
Q psy4538 132 PDEQARCE----IVTKLLRN----I---TNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVR 185 (343)
Q Consensus 132 P~~~er~~----il~~~l~~----~---~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~ 185 (343)
|...+|.+ ++++++++ . ...++++.+..|..+..--+.++|+++++.++..+-.
T Consensus 312 PpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~~~ 376 (464)
T COG2204 312 PPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVILSEG 376 (464)
T ss_pred CcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCc
Confidence 77766654 33444433 2 2356778888888887777899999999998776644
No 234
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.89 E-value=3.5e-08 Score=95.21 Aligned_cols=168 Identities=21% Similarity=0.258 Sum_probs=100.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccccccccc-----chHH--------HHHHHHHHHHHhcCCcEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWY-----GEGE--------KMVRALFAVASVHQPSIIFID 64 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~-----~~~~--------~~l~~~~~~~~~~~p~vl~iD 64 (343)
|||+|++||||+++|+++-+.. +.||+.++|..+..... |..+ .....+|+. ...+.||||
T Consensus 238 VLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~---A~gGTLfLd 314 (526)
T TIGR02329 238 VLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEA---AHRGTLFLD 314 (526)
T ss_pred EEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhh---cCCceEEec
Confidence 6899999999999999998754 57999999987743211 1000 001112222 236789999
Q ss_pred ccccccccCCCCchhHHHHHHHHHHHhhccCCCC-------CCCcEEEEEecCCCc-------hhhHHHHhccceEEEEc
Q psy4538 65 EIDSLLCQRSDQENETSRRLKTEFLISLDGASTL-------DDDLVLVIGATNRPQ-------ELDEAARRRLVKRLYIP 130 (343)
Q Consensus 65 eid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~v~vi~~tn~~~-------~l~~~l~~rf~~~i~~~ 130 (343)
|++.|. ...+..|+..++..... ....+.+|++|+..- .+.+.+..|+. .+.+.
T Consensus 315 eI~~Lp-----------~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~-~~~I~ 382 (526)
T TIGR02329 315 EIGEMP-----------LPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLS-ILRIA 382 (526)
T ss_pred ChHhCC-----------HHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcC-CcEEe
Confidence 999883 23444555555432210 112356787776532 22223333554 34444
Q ss_pred CCCHHHHH----HHHHHHHhhh----CCCCChhhHHH-------HHHHCCCCCHHHHHHHHHHHhccc
Q psy4538 131 LPDEQARC----EIVTKLLRNI----TNSLTVDDIEE-------VGRMTTDFSGADMASLCREASLGP 183 (343)
Q Consensus 131 ~P~~~er~----~il~~~l~~~----~~~~~~~~~~~-------la~~t~g~s~~dl~~l~~~a~~~a 183 (343)
.|...+|. .++.+++... ...++++.+.. |..+..-.+.++|+++++.++..+
T Consensus 383 lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 383 LPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALEL 450 (526)
T ss_pred CCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 55554443 4455555443 33466666666 777776678999999999887543
No 235
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.89 E-value=1.1e-08 Score=95.96 Aligned_cols=167 Identities=22% Similarity=0.312 Sum_probs=107.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccc-----cch--------HHHHHHHHHHHHHhcCCcEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKW-----YGE--------GEKMVRALFAVASVHQPSIIFID 64 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~-----~~~--------~~~~l~~~~~~~~~~~p~vl~iD 64 (343)
|||.|.+||||..+|+++-+.. +.||+.+||..+.... .|. ...--...|+.|. .+-||||
T Consensus 271 VLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~---gGTLFLD 347 (560)
T COG3829 271 VLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYEKGAFTGASKGGKPGLFELAN---GGTLFLD 347 (560)
T ss_pred EEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcCCccccccccCCCCcceeecc---CCeEEeh
Confidence 6899999999999999997766 6799999997764321 111 1110122333333 5689999
Q ss_pred ccccccccCCCCchhHHHHHHHHHHHhhccCCCC-------CCCcEEEEEecCCCchhhHHHHh-ccc-------eEEEE
Q psy4538 65 EIDSLLCQRSDQENETSRRLKTEFLISLDGASTL-------DDDLVLVIGATNRPQELDEAARR-RLV-------KRLYI 129 (343)
Q Consensus 65 eid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~v~vi~~tn~~~~l~~~l~~-rf~-------~~i~~ 129 (343)
||..+. ..++..|++.++..... -.-.|.+|++||. .+...+.. +|. .++.+
T Consensus 348 EIgemp-----------l~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~--nL~~~i~~G~FReDLYYRLNV~~i 414 (560)
T COG3829 348 EIGEMP-----------LPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNR--NLEKMIAEGTFREDLYYRLNVIPI 414 (560)
T ss_pred hhccCC-----------HHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCc--CHHHHHhcCcchhhheeeeceeee
Confidence 999772 35556677666543211 2345889999987 44444443 332 14455
Q ss_pred cCCCHHHHHH----HHHHHHhh----hC---CCCChhhHHHHHHHCCCCCHHHHHHHHHHHhccc
Q psy4538 130 PLPDEQARCE----IVTKLLRN----IT---NSLTVDDIEEVGRMTTDFSGADMASLCREASLGP 183 (343)
Q Consensus 130 ~~P~~~er~~----il~~~l~~----~~---~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a 183 (343)
..|...+|.+ +..+++.+ ++ ..++++.+..|.++-.--+.++|++++..+....
T Consensus 415 ~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v~~~ 479 (560)
T COG3829 415 TIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIERAVNLV 479 (560)
T ss_pred cCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHHHhcc
Confidence 5666655543 33344433 22 2367888888888877779999999999987533
No 236
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=3.5e-08 Score=89.39 Aligned_cols=156 Identities=14% Similarity=0.169 Sum_probs=98.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc------------------EEEEeccccc-ccc--------cc--------hHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT------------------FFCISASTLT-SKW--------YG--------EGEKM 45 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~------------------~~~v~~~~l~-~~~--------~~--------~~~~~ 45 (343)
.||+||+|+||+++|.++|+.+-+. ++.+.+.... ++. .| -.-..
T Consensus 29 ~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ 108 (314)
T PRK07399 29 YLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQ 108 (314)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccccCcHHH
Confidence 4899999999999999999987332 1222221000 000 00 00123
Q ss_pred HHHHHHHHH----hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh
Q psy4538 46 VRALFAVAS----VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR 121 (343)
Q Consensus 46 l~~~~~~~~----~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~ 121 (343)
++.+...+. .....|++||++|.+- ....+.|+..++... +.++|..++.++.+-+.++|
T Consensus 109 ir~i~~~l~~~p~~~~~kVvII~~ae~m~-----------~~aaNaLLK~LEEPp-----~~~fILi~~~~~~Ll~TI~S 172 (314)
T PRK07399 109 IREIKRFLSRPPLEAPRKVVVIEDAETMN-----------EAAANALLKTLEEPG-----NGTLILIAPSPESLLPTIVS 172 (314)
T ss_pred HHHHHHHHccCcccCCceEEEEEchhhcC-----------HHHHHHHHHHHhCCC-----CCeEEEEECChHhCcHHHHh
Confidence 344433332 2346799999999872 344567888887752 33566677788999999999
Q ss_pred ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHH
Q psy4538 122 RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCR 177 (343)
Q Consensus 122 rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~ 177 (343)
|+. .+.|++|+.++..+++....... .. ......++....| +++...++++
T Consensus 173 Rcq-~i~f~~l~~~~~~~~L~~~~~~~--~~-~~~~~~l~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 173 RCQ-IIPFYRLSDEQLEQVLKRLGDEE--IL-NINFPELLALAQG-SPGAAIANIE 223 (314)
T ss_pred hce-EEecCCCCHHHHHHHHHHhhccc--cc-hhHHHHHHHHcCC-CHHHHHHHHH
Confidence 996 89999999999998888754321 11 1124567776665 5555555444
No 237
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.3e-08 Score=88.18 Aligned_cols=86 Identities=22% Similarity=0.376 Sum_probs=63.4
Q ss_pred CCcEEEecccccccccCCCCc-hhHHHHHHHHHHHhhccCCC------CCCCcEEEEEec----CCCchhhHHHHhccce
Q psy4538 57 QPSIIFIDEIDSLLCQRSDQE-NETSRRLKTEFLISLDGAST------LDDDLVLVIGAT----NRPQELDEAARRRLVK 125 (343)
Q Consensus 57 ~p~vl~iDeid~l~~~~~~~~-~~~~~~~~~~ll~~l~~~~~------~~~~~v~vi~~t----n~~~~l~~~l~~rf~~ 125 (343)
+.+|+||||||.++.+.+.+. +-....++..++-.+++..- ....++++|++- ..|+++-|.+.-||..
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 346999999999988765333 22334455667666665432 134678888875 6688888999999999
Q ss_pred EEEEcCCCHHHHHHHHH
Q psy4538 126 RLYIPLPDEQARCEIVT 142 (343)
Q Consensus 126 ~i~~~~P~~~er~~il~ 142 (343)
.+++...+.+.-..||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999998888874
No 238
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=2.4e-08 Score=90.85 Aligned_cols=127 Identities=16% Similarity=0.236 Sum_probs=84.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC-------------------------cEEEEecccc---cccc-cchHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA-------------------------TFFCISASTL---TSKW-YGEGEKMVRALFA 51 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~-------------------------~~~~v~~~~l---~~~~-~~~~~~~l~~~~~ 51 (343)
+||+||+|+|||++|+.+|+.+.+ .++.+++..- .++. ..-.-..++.+.+
T Consensus 24 ~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~l~~ 103 (325)
T PRK08699 24 WLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVREIID 103 (325)
T ss_pred EEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHHHHH
Confidence 479999999999999999998743 1333333210 0000 0012334555555
Q ss_pred HHHh----cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEE
Q psy4538 52 VASV----HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRL 127 (343)
Q Consensus 52 ~~~~----~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i 127 (343)
.+.. ....|++||+++.+- ....+.++..++... ..+.+|.+|+.+..+.+.+++|+. .+
T Consensus 104 ~~~~~p~~~~~kV~iiEp~~~Ld-----------~~a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~SRc~-~~ 167 (325)
T PRK08699 104 NVYLTSVRGGLRVILIHPAESMN-----------LQAANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIKSRCR-KM 167 (325)
T ss_pred HHhhCcccCCceEEEEechhhCC-----------HHHHHHHHHHHHhCc----CCCEEEEEeCChHhChHHHHHHhh-hh
Confidence 4432 345699999999873 234456777776653 235566688888899999999997 88
Q ss_pred EEcCCCHHHHHHHHHH
Q psy4538 128 YIPLPDEQARCEIVTK 143 (343)
Q Consensus 128 ~~~~P~~~er~~il~~ 143 (343)
.|++|+.++..+.+..
T Consensus 168 ~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 168 VLPAPSHEEALAYLRE 183 (325)
T ss_pred cCCCCCHHHHHHHHHh
Confidence 8999999887777653
No 239
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.83 E-value=7e-08 Score=92.37 Aligned_cols=165 Identities=19% Similarity=0.294 Sum_probs=104.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchHHHHHHHHHHH---------------HHhcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEGEKMVRALFAV---------------ASVHQPSIIF 62 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~---------------~~~~~p~vl~ 62 (343)
++++|++||||+++|+++.... +.+|+.++|..+..... -..+|.. .....++.||
T Consensus 165 vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ 238 (445)
T TIGR02915 165 VLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL------ESELFGYEKGAFTGAVKQTLGKIEYAHGGTLF 238 (445)
T ss_pred EEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH------HHHhcCCCCCCcCCCccCCCCceeECCCCEEE
Confidence 5799999999999999998765 46899999987633211 0111110 1113467999
Q ss_pred ecccccccccCCCCchhHHHHHHHHHHHhhccCCC-------CCCCcEEEEEecCCC-------chhhHHHHhccceEEE
Q psy4538 63 IDEIDSLLCQRSDQENETSRRLKTEFLISLDGAST-------LDDDLVLVIGATNRP-------QELDEAARRRLVKRLY 128 (343)
Q Consensus 63 iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~v~vi~~tn~~-------~~l~~~l~~rf~~~i~ 128 (343)
|||++.+. ...+..++..++.... .....+.+|++|+.. ..+.+.+..|+. .+.
T Consensus 239 l~~i~~l~-----------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~-~~~ 306 (445)
T TIGR02915 239 LDEIGDLP-----------LNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIA-EIS 306 (445)
T ss_pred EechhhCC-----------HHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhc-cce
Confidence 99999883 2334445554443211 112246778887654 233444555554 345
Q ss_pred EcCCCHHHHHH----HHHHHHhh----hC---CCCChhhHHHHHHHCCCCCHHHHHHHHHHHhccc
Q psy4538 129 IPLPDEQARCE----IVTKLLRN----IT---NSLTVDDIEEVGRMTTDFSGADMASLCREASLGP 183 (343)
Q Consensus 129 ~~~P~~~er~~----il~~~l~~----~~---~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a 183 (343)
+..|...+|.+ ++++++.. ++ ..++++.+..|..+..-.+.++|+++++.|+..+
T Consensus 307 i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 307 ITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred ecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 55555555543 44444433 22 3578889999999887789999999999987654
No 240
>PF13173 AAA_14: AAA domain
Probab=98.79 E-value=4.7e-08 Score=76.87 Aligned_cols=67 Identities=28% Similarity=0.375 Sum_probs=46.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC--CcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK--ATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSL 69 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~--~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l 69 (343)
++|+||.|+|||++++.+++.+. .+++++++.+.......... +...+.......+.+++|||++.+
T Consensus 5 ~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 47999999999999999999876 77888888776442111111 222222222235789999999977
No 241
>KOG2680|consensus
Probab=98.79 E-value=1.3e-07 Score=82.33 Aligned_cols=89 Identities=13% Similarity=0.129 Sum_probs=75.3
Q ss_pred CchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhccccccccccc
Q psy4538 112 PQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSR 191 (343)
Q Consensus 112 ~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~ 191 (343)
|..++-.++.|.- .|...+++.++..+|++..+......++++.+..|......-+.+.--+++..|.+.|.++
T Consensus 339 phGiP~D~lDR~l-II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~kr----- 412 (454)
T KOG2680|consen 339 PHGIPIDLLDRML-IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKR----- 412 (454)
T ss_pred CCCCcHHHhhhhh-eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh-----
Confidence 5678888888875 7788889999999999999998888889989999988877777788888888888888877
Q ss_pred ccccCCcccChhHHHHHHH
Q psy4538 192 IDALDVRPISIDDFRDALK 210 (343)
Q Consensus 192 ~~~~~~~~i~~~d~~~a~~ 210 (343)
....+..+|+..+..
T Consensus 413 ----k~~~v~~~di~r~y~ 427 (454)
T KOG2680|consen 413 ----KGKVVEVDDIERVYR 427 (454)
T ss_pred ----cCceeehhHHHHHHH
Confidence 456788889988876
No 242
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.79 E-value=7.4e-08 Score=79.25 Aligned_cols=105 Identities=24% Similarity=0.439 Sum_probs=62.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccccccccc-----chH-------HHHHHHHHHHHHhcCCcEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWY-----GEG-------EKMVRALFAVASVHQPSIIFIDE 65 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~-----~~~-------~~~l~~~~~~~~~~~p~vl~iDe 65 (343)
|||+|++||||+.+|+++-+.. +.||+.++|..+..... |.. ...-..++..+ ..+.|||||
T Consensus 25 VlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A---~~GtL~Ld~ 101 (168)
T PF00158_consen 25 VLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQA---NGGTLFLDE 101 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHT---TTSEEEEET
T ss_pred EEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeec---cceEEeecc
Confidence 6899999999999999998865 46999999987633210 000 00001233333 467999999
Q ss_pred cccccccCCCCchhHHHHHHHHHHHhhccCCC-------CCCCcEEEEEecCCCchhhHHHHh
Q psy4538 66 IDSLLCQRSDQENETSRRLKTEFLISLDGAST-------LDDDLVLVIGATNRPQELDEAARR 121 (343)
Q Consensus 66 id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~v~vi~~tn~~~~l~~~l~~ 121 (343)
++.|. ...+..|+..++.... .....+.+|++|+. .+...+.+
T Consensus 102 I~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~--~l~~~v~~ 151 (168)
T PF00158_consen 102 IEDLP-----------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK--DLEELVEQ 151 (168)
T ss_dssp GGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS---HHHHHHT
T ss_pred hhhhH-----------HHHHHHHHHHHhhchhccccccccccccceEEeecCc--CHHHHHHc
Confidence 99883 3344455555553211 11236788888875 34444333
No 243
>KOG0744|consensus
Probab=98.78 E-value=3.6e-09 Score=92.66 Aligned_cols=75 Identities=24% Similarity=0.399 Sum_probs=65.6
Q ss_pred eEeecchhhhhcccCCCc----chhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHHhhhceEeccCCCCC
Q psy4538 227 IIFIDEIDSLLCQRSDQE----NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQ 302 (343)
Q Consensus 227 ilf~DEiDsl~~~R~~~~----~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allRR~d~~i~~~~P~~~ 302 (343)
-++|||++||+..|...+ -+-+-|+||.+|++||.+..+++ |++++|+|.-+.||-||.-|-|-+.|++.|+.+
T Consensus 253 fvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~N--vliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ 330 (423)
T KOG0744|consen 253 FVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPN--VLILATSNLTDSIDVAFVDRADIVFYVGPPTAE 330 (423)
T ss_pred EEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCC--EEEEeccchHHHHHHHhhhHhhheeecCCccHH
Confidence 457999999998884322 24567999999999999999888 999999999999999999999999999999876
Q ss_pred C
Q psy4538 303 K 303 (343)
Q Consensus 303 ~ 303 (343)
.
T Consensus 331 a 331 (423)
T KOG0744|consen 331 A 331 (423)
T ss_pred H
Confidence 4
No 244
>PRK12377 putative replication protein; Provisional
Probab=98.78 E-value=3.7e-08 Score=85.93 Aligned_cols=67 Identities=15% Similarity=0.320 Sum_probs=45.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchHH--HHHHHHHHHHHhcCCcEEEecccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEGE--KMVRALFAVASVHQPSIIFIDEIDSL 69 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~~--~~l~~~~~~~~~~~p~vl~iDeid~l 69 (343)
++|+||||||||+||.++|+++ |..++.++..++......... .....++.. .....+|+|||++..
T Consensus 104 l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~--l~~~dLLiIDDlg~~ 175 (248)
T PRK12377 104 FVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQE--LCKVDLLVLDEIGIQ 175 (248)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHH--hcCCCEEEEcCCCCC
Confidence 5899999999999999999987 667777777776543211100 011122222 246789999999754
No 245
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.77 E-value=1.1e-07 Score=91.45 Aligned_cols=165 Identities=20% Similarity=0.262 Sum_probs=103.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchHHHHHHHHHH---------------HHHhcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEGEKMVRALFA---------------VASVHQPSIIF 62 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~~~~l~~~~~---------------~~~~~~p~vl~ 62 (343)
++++|++||||+++|+++.... +.+++.++|..+..... -..+|. ......+++||
T Consensus 169 vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ 242 (457)
T PRK11361 169 VLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL------ESELFGHEKGAFTGAQTLRQGLFERANEGTLL 242 (457)
T ss_pred EEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH------HHHhcCCCCCCCCCCCCCCCCceEECCCCEEE
Confidence 5799999999999999997764 57899999987743210 111111 01112357999
Q ss_pred ecccccccccCCCCchhHHHHHHHHHHHhhccCCC-------CCCCcEEEEEecCCCc-------hhhHHHHhccceEEE
Q psy4538 63 IDEIDSLLCQRSDQENETSRRLKTEFLISLDGAST-------LDDDLVLVIGATNRPQ-------ELDEAARRRLVKRLY 128 (343)
Q Consensus 63 iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~v~vi~~tn~~~-------~l~~~l~~rf~~~i~ 128 (343)
|||++.+.. .....++..++.... .....+.+|++|+..- .+.+.+..|+. .+.
T Consensus 243 ld~i~~l~~-----------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~-~~~ 310 (457)
T PRK11361 243 LDEIGEMPL-----------VLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLN-VIH 310 (457)
T ss_pred EechhhCCH-----------HHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhc-cce
Confidence 999998842 233445555443211 0123467888887532 33444554554 456
Q ss_pred EcCCCHHHHHH----HHHHHHhhh----C---CCCChhhHHHHHHHCCCCCHHHHHHHHHHHhccc
Q psy4538 129 IPLPDEQARCE----IVTKLLRNI----T---NSLTVDDIEEVGRMTTDFSGADMASLCREASLGP 183 (343)
Q Consensus 129 ~~~P~~~er~~----il~~~l~~~----~---~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a 183 (343)
+..|...+|.+ ++.+++..+ + ..++++.+..|..+....+.++++++++.++..+
T Consensus 311 i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 311 LILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN 376 (457)
T ss_pred ecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC
Confidence 66666666543 334444332 1 3568888889998887789999999999987554
No 246
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.77 E-value=1.1e-07 Score=95.27 Aligned_cols=131 Identities=12% Similarity=0.128 Sum_probs=76.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC-------CcEEEEecccccccccchHHHHHHHHHH--HHHhcCCcEEEecccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK-------ATFFCISASTLTSKWYGEGEKMVRALFA--VASVHQPSIIFIDEIDSLLC 71 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~-------~~~~~v~~~~l~~~~~~~~~~~l~~~~~--~~~~~~p~vl~iDeid~l~~ 71 (343)
|||.|+||||||.+|+++++... .++..+.+...... .+...... .+. .......++++|||++.+.
T Consensus 495 VLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~-~d~~tG~~--~le~GaLvlAdgGtL~IDEidkms- 570 (915)
T PTZ00111 495 VLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKF-NESDNGRA--MIQPGAVVLANGGVCCIDELDKCH- 570 (915)
T ss_pred EEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhh-cccccCcc--cccCCcEEEcCCCeEEecchhhCC-
Confidence 68999999999999999998653 23333333222110 00000000 000 0011335799999999873
Q ss_pred cCCCCchhHHHHHHHHHHHhhccC---------CCCCCCcEEEEEecCCCc-------------hhhHHHHhccceE-EE
Q psy4538 72 QRSDQENETSRRLKTEFLISLDGA---------STLDDDLVLVIGATNRPQ-------------ELDEAARRRLVKR-LY 128 (343)
Q Consensus 72 ~~~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~v~vi~~tn~~~-------------~l~~~l~~rf~~~-i~ 128 (343)
......++..|+.- ...-+.++.||+++|+.. .+++.+++||+.. +.
T Consensus 571 ----------~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l 640 (915)
T PTZ00111 571 ----------NESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLV 640 (915)
T ss_pred ----------HHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEe
Confidence 12233344444321 112245688999998852 5779999999855 45
Q ss_pred EcCCCHHHHHHHHHHHH
Q psy4538 129 IPLPDEQARCEIVTKLL 145 (343)
Q Consensus 129 ~~~P~~~er~~il~~~l 145 (343)
++.|+.+.-+.|..+.+
T Consensus 641 ~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 641 LDHIDQDTDQLISLSIA 657 (915)
T ss_pred cCCCChHHHHHHHHHHH
Confidence 67788777666655554
No 247
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.76 E-value=3.6e-08 Score=91.38 Aligned_cols=169 Identities=24% Similarity=0.329 Sum_probs=107.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchHH--HHHHHHHHHHH--------hcCCcEEEecccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEGE--KMVRALFAVAS--------VHQPSIIFIDEID 67 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~~--~~l~~~~~~~~--------~~~p~vl~iDeid 67 (343)
|||+|.+||||..+||+|-+.. ..||+.+||..+..... +++ ...+..|.-|. ..+++-||||||.
T Consensus 249 VLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLl-ESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIG 327 (550)
T COG3604 249 VLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLL-ESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIG 327 (550)
T ss_pred EEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHH-HHHHhcccccccccchhccCcceeecCCCeEechhhc
Confidence 6899999999999999998766 57999999988754321 111 11122333221 1246789999999
Q ss_pred cccccCCCCchhHHHHHHHHHHHhhccCCCC-------CCCcEEEEEecCCCchhhHHHHh-ccc-------eEEEEcCC
Q psy4538 68 SLLCQRSDQENETSRRLKTEFLISLDGASTL-------DDDLVLVIGATNRPQELDEAARR-RLV-------KRLYIPLP 132 (343)
Q Consensus 68 ~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~v~vi~~tn~~~~l~~~l~~-rf~-------~~i~~~~P 132 (343)
.+. -.++..+++-++.-... -.-.|-||++||+ ++...++. +|. .++-+..|
T Consensus 328 elP-----------L~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNR--DL~~~V~~G~FRaDLYyRLsV~Pl~lP 394 (550)
T COG3604 328 ELP-----------LALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNR--DLEEMVRDGEFRADLYYRLSVFPLELP 394 (550)
T ss_pred cCC-----------HHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccch--hHHHHHHcCcchhhhhhcccccccCCC
Confidence 873 23444555554432211 1234789999997 66666655 343 12334445
Q ss_pred CHHHHHH----HHHHHHhh----h---CCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhccc
Q psy4538 133 DEQARCE----IVTKLLRN----I---TNSLTVDDIEEVGRMTTDFSGADMASLCREASLGP 183 (343)
Q Consensus 133 ~~~er~~----il~~~l~~----~---~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a 183 (343)
..-||.. +..+++++ + ...++.+.++.|.++..--+.++++++++.|+..|
T Consensus 395 PLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 395 PLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred CcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 5555432 22333332 2 23568888999998877779999999999998866
No 248
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.75 E-value=1.3e-07 Score=90.80 Aligned_cols=169 Identities=12% Similarity=0.154 Sum_probs=95.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccc-c------ccccch---H---HHH---HHHH-HHHHHh--------
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTL-T------SKWYGE---G---EKM---VRAL-FAVASV-------- 55 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l-~------~~~~~~---~---~~~---l~~~-~~~~~~-------- 55 (343)
+||+||+|||||++++.+|+++|..+.+...... . ..+.+. . ... ...+ +...+.
T Consensus 48 LlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~ 127 (519)
T PF03215_consen 48 LLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGS 127 (519)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhccccccccccccccccCC
Confidence 4789999999999999999999998887643222 0 001100 0 011 1111 111111
Q ss_pred ---cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCC-cEEEEEec-------CCC--------chhh
Q psy4538 56 ---HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDD-LVLVIGAT-------NRP--------QELD 116 (343)
Q Consensus 56 ---~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~-~v~vi~~t-------n~~--------~~l~ 116 (343)
..+.||+|+|+-.++... .......+...+.. ... ++++|.+. +.. ..++
T Consensus 128 ~~~~~~kvILVEDlPN~~~~~-------~~~f~~~L~~~l~~----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~ 196 (519)
T PF03215_consen 128 NSSSNKKVILVEDLPNVFHRD-------TSRFREALRQYLRS----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFP 196 (519)
T ss_pred CcCCCceEEEeeccccccchh-------HHHHHHHHHHHHHc----CCCCCEEEEEecccccCCCCcccccchhhhhccC
Confidence 246799999998765332 12222222222322 122 66666661 111 1356
Q ss_pred HHHHhccc-eEEEEcCCCHHHHHHHHHHHHhhh-----C-CCCC--hhhHHHHHHHCCCCCHHHHHHHHHHHhcccc
Q psy4538 117 EAARRRLV-KRLYIPLPDEQARCEIVTKLLRNI-----T-NSLT--VDDIEEVGRMTTDFSGADMASLCREASLGPV 184 (343)
Q Consensus 117 ~~l~~rf~-~~i~~~~P~~~er~~il~~~l~~~-----~-~~~~--~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~ 184 (343)
+.+..... ..|.|.+-...-..+.|...+... + ...+ ...++.+++.+. +||+.+++.-...+.
T Consensus 197 ~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 197 KEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred HHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 66666333 578898877777777777776654 1 1112 234777877665 599988877655554
No 249
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.75 E-value=1.4e-07 Score=90.06 Aligned_cols=120 Identities=23% Similarity=0.342 Sum_probs=70.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC----cEEEEec------c-----cc-----cccc--------cchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA----TFFCISA------S-----TL-----TSKW--------YGEGEKMVRALFAV 52 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~----~~~~v~~------~-----~l-----~~~~--------~~~~~~~l~~~~~~ 52 (343)
++|+||||+|||++++.++..+.. ..+++.. . .+ .+.. .|.....-...+.
T Consensus 213 llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~- 291 (506)
T PRK09862 213 LLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEIS- 291 (506)
T ss_pred EEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhh-
Confidence 479999999999999999986631 1122111 0 00 0000 0100000011122
Q ss_pred HHhcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCC---------CCCCcEEEEEecCCCc----------
Q psy4538 53 ASVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAST---------LDDDLVLVIGATNRPQ---------- 113 (343)
Q Consensus 53 ~~~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~---------~~~~~v~vi~~tn~~~---------- 113 (343)
.....+|||||++.+- ...+..+...|+.-.. ....++.+|+++|...
T Consensus 292 --~A~gGvLfLDEi~e~~-----------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~ 358 (506)
T PRK09862 292 --LAHNGVLFLDELPEFE-----------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNR 358 (506)
T ss_pred --hccCCEEecCCchhCC-----------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCC
Confidence 2346799999998762 2444455554433221 1234678999998752
Q ss_pred -----------hhhHHHHhccceEEEEcCCCH
Q psy4538 114 -----------ELDEAARRRLVKRLYIPLPDE 134 (343)
Q Consensus 114 -----------~l~~~l~~rf~~~i~~~~P~~ 134 (343)
.++..+++||+..+.++.|+.
T Consensus 359 c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~ 390 (506)
T PRK09862 359 CTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPP 390 (506)
T ss_pred cCHHHHHHHHhhCCHhHHhhccEEEEeCCCCH
Confidence 467789999999999998854
No 250
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.75 E-value=7.4e-08 Score=92.85 Aligned_cols=166 Identities=20% Similarity=0.288 Sum_probs=104.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchHHHHHHHHHHH---------------HHhcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEGEKMVRALFAV---------------ASVHQPSIIF 62 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~---------------~~~~~p~vl~ 62 (343)
+++.|++||||+++|+++.... +.+|+.++|..+.... .-..+|.. .....++.||
T Consensus 164 vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~------~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~ 237 (469)
T PRK10923 164 VLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL------IESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237 (469)
T ss_pred EEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH------HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEE
Confidence 5899999999999999998876 4689999998773221 11111110 1112356899
Q ss_pred ecccccccccCCCCchhHHHHHHHHHHHhhccCCCC-------CCCcEEEEEecCCC-------chhhHHHHhccc-eEE
Q psy4538 63 IDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTL-------DDDLVLVIGATNRP-------QELDEAARRRLV-KRL 127 (343)
Q Consensus 63 iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~v~vi~~tn~~-------~~l~~~l~~rf~-~~i 127 (343)
|||++.+. ......++..++..... ....+.+|++|+.. ..+.+.+..|+. ..|
T Consensus 238 l~~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i 306 (469)
T PRK10923 238 LDEIGDMP-----------LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRV 306 (469)
T ss_pred EeccccCC-----------HHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceee
Confidence 99999883 23334455555432110 12245777777653 234566666774 344
Q ss_pred EEcCCCH--HHHHHHHHHHHhhh----C---CCCChhhHHHHHHHCCCCCHHHHHHHHHHHhccc
Q psy4538 128 YIPLPDE--QARCEIVTKLLRNI----T---NSLTVDDIEEVGRMTTDFSGADMASLCREASLGP 183 (343)
Q Consensus 128 ~~~~P~~--~er~~il~~~l~~~----~---~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a 183 (343)
.+|+... ++...++.++++.. + ..++++.+..|..+..-.+.++|+++++.+...+
T Consensus 307 ~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 307 HLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred cCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 4444322 33344555555432 1 2468888999999888889999999999987654
No 251
>PRK08181 transposase; Validated
Probab=98.75 E-value=2.9e-08 Score=87.62 Aligned_cols=68 Identities=21% Similarity=0.377 Sum_probs=46.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchH-HHHHHHHHHHHHhcCCcEEEeccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEG-EKMVRALFAVASVHQPSIIFIDEIDSLL 70 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~-~~~l~~~~~~~~~~~p~vl~iDeid~l~ 70 (343)
++|+||||||||+|+.++++++ |..+++++..++........ .......+... ..+.+|+|||++.+.
T Consensus 109 lll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 109 LLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVT 180 (269)
T ss_pred EEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEecccccc
Confidence 5899999999999999998755 77788888877765431110 11122233322 357799999998763
No 252
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.74 E-value=7.4e-08 Score=83.54 Aligned_cols=163 Identities=20% Similarity=0.251 Sum_probs=83.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc---EEEEecccccc-----c------------------------------ccchH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT---FFCISASTLTS-----K------------------------------WYGEG 42 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~---~~~v~~~~l~~-----~------------------------------~~~~~ 42 (343)
++|+||.|+|||++++.+.+.+... .+++....... . .....
T Consensus 23 ~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 102 (234)
T PF01637_consen 23 ILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLSEDS 102 (234)
T ss_dssp EEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-
T ss_pred EEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchhhH
Confidence 4799999999999999999988321 11111100000 0 00112
Q ss_pred HHHHHHHHHHHHh-cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhh-----
Q psy4538 43 EKMVRALFAVASV-HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELD----- 116 (343)
Q Consensus 43 ~~~l~~~~~~~~~-~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~----- 116 (343)
...+..++..... ....||+|||++.+. .... ........+...++.... ..++.+|.+........
T Consensus 103 ~~~l~~~~~~l~~~~~~~iiviDe~~~~~-~~~~----~~~~~~~~l~~~~~~~~~--~~~~~~v~~~S~~~~~~~~~~~ 175 (234)
T PF01637_consen 103 FSALERLLEKLKKKGKKVIIVIDEFQYLA-IASE----EDKDFLKSLRSLLDSLLS--QQNVSIVITGSSDSLMEEFLDD 175 (234)
T ss_dssp G--HHHHHHHHHHCHCCEEEEEETGGGGG-BCTT----TTHHHHHHHHHHHHH------TTEEEEEEESSHHHHHHTT-T
T ss_pred HHHHHHHHHHHHhcCCcEEEEEecHHHHh-hccc----chHHHHHHHHHHHhhccc--cCCceEEEECCchHHHHHhhcc
Confidence 2334445554433 234899999999997 1111 112344455555554332 22333333332221111
Q ss_pred -HHHHhccceEEEEcCCCHHHHHHHHHHHHhhhCCCC--ChhhHHHHHHHCCCCCHHHHH
Q psy4538 117 -EAARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSL--TVDDIEEVGRMTTDFSGADMA 173 (343)
Q Consensus 117 -~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~--~~~~~~~la~~t~g~s~~dl~ 173 (343)
..+..|+.. +.+++.+.++..+++...++.. ..+ ++..++.+...+.| .|+.|.
T Consensus 176 ~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG-~P~~l~ 232 (234)
T PF01637_consen 176 KSPLFGRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGG-NPRYLQ 232 (234)
T ss_dssp TSTTTT---E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT--HHHHH
T ss_pred cCccccccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCC-CHHHHh
Confidence 123346665 9999999999999999988776 444 88889999998887 454443
No 253
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.71 E-value=4.4e-08 Score=89.06 Aligned_cols=67 Identities=21% Similarity=0.469 Sum_probs=45.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccch---HHHHHHHHHHHHHhcCCcEEEecccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGE---GEKMVRALFAVASVHQPSIIFIDEIDSL 69 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~---~~~~l~~~~~~~~~~~p~vl~iDeid~l 69 (343)
++|+||+|+|||+|+.++|+++ |..++.++..++....... ........+.. .....+|+|||+...
T Consensus 186 Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~--l~~~DLLIIDDlG~e 258 (329)
T PRK06835 186 LLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDL--LINCDLLIIDDLGTE 258 (329)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHH--hccCCEEEEeccCCC
Confidence 5899999999999999999987 7788888887775542111 00011111222 235679999999865
No 254
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.70 E-value=4.6e-07 Score=87.19 Aligned_cols=180 Identities=19% Similarity=0.287 Sum_probs=112.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchHHHHHHHHHH---------------HHHhcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEGEKMVRALFA---------------VASVHQPSIIF 62 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~~~~l~~~~~---------------~~~~~~p~vl~ 62 (343)
+++.|.+||||+++|+++.... +.+|+.++|..+..... + ..+|. ......++.||
T Consensus 160 vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~---~---~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ 233 (463)
T TIGR01818 160 VLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI---E---SELFGHEKGAFTGANTRRQGRFEQADGGTLF 233 (463)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH---H---HHhcCCCCCCCCCcccCCCCcEEECCCCeEE
Confidence 4789999999999999998765 56899999987733211 0 01111 01123467899
Q ss_pred ecccccccccCCCCchhHHHHHHHHHHHhhccCCC-------CCCCcEEEEEecCCCc-------hhhHHHHhccc-eEE
Q psy4538 63 IDEIDSLLCQRSDQENETSRRLKTEFLISLDGAST-------LDDDLVLVIGATNRPQ-------ELDEAARRRLV-KRL 127 (343)
Q Consensus 63 iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~v~vi~~tn~~~-------~l~~~l~~rf~-~~i 127 (343)
|||++.+.. .....++..++.... .....+.+|++++..- .+.+.+..|+. ..|
T Consensus 234 l~ei~~l~~-----------~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i 302 (463)
T TIGR01818 234 LDEIGDMPL-----------DAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRI 302 (463)
T ss_pred EEchhhCCH-----------HHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCccee
Confidence 999998832 233445544443211 0122456777776532 34445666665 356
Q ss_pred EEcCCC--HHHHHHHHHHHHhhh----C---CCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCc
Q psy4538 128 YIPLPD--EQARCEIVTKLLRNI----T---NSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVR 198 (343)
Q Consensus 128 ~~~~P~--~~er~~il~~~l~~~----~---~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~ 198 (343)
++|+.. .++...++.+++... + ..++++.+..|..+..-.+.++|+++++.++..+.. .
T Consensus 303 ~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~~------------~ 370 (463)
T TIGR01818 303 HLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASG------------D 370 (463)
T ss_pred cCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC------------C
Confidence 666654 345555666555432 2 356888999999887777889999999998765532 3
Q ss_pred ccChhHHHHHH
Q psy4538 199 PISIDDFRDAL 209 (343)
Q Consensus 199 ~i~~~d~~~a~ 209 (343)
.|+.+|+...+
T Consensus 371 ~i~~~~l~~~~ 381 (463)
T TIGR01818 371 EVLVSDLPAEL 381 (463)
T ss_pred cccHHhchHHH
Confidence 46666765544
No 255
>PF05729 NACHT: NACHT domain
Probab=98.68 E-value=2.2e-07 Score=76.08 Aligned_cols=139 Identities=21% Similarity=0.267 Sum_probs=71.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC---------cEEEEeccccccccc------------chHHHHHHHHH-HHHHhcCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA---------TFFCISASTLTSKWY------------GEGEKMVRALF-AVASVHQP 58 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~---------~~~~v~~~~l~~~~~------------~~~~~~l~~~~-~~~~~~~p 58 (343)
++|+|+||+|||++++.++..+.. ..+.+++.+...... ..........+ ........
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNKR 82 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCCc
Confidence 579999999999999999987721 122333333221100 00000111111 12233456
Q ss_pred cEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccc--eEEEEcCCCHHH
Q psy4538 59 SIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLV--KRLYIPLPDEQA 136 (343)
Q Consensus 59 ~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~--~~i~~~~P~~~e 136 (343)
.+++||.+|.+...............+..++ .. ...++ +-++.+++. ..... +.+.+. ..+.+.+.+.++
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~---~~-~~~~~--~~liit~r~-~~~~~-~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLL---PQ-ALPPG--VKLIITSRP-RAFPD-LRRRLKQAQILELEPFSEED 154 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHh---hh-ccCCC--CeEEEEEcC-ChHHH-HHHhcCCCcEEEECCCCHHH
Confidence 7899999999865332211111122222222 22 11123 333333432 22211 333332 468899999999
Q ss_pred HHHHHHHHHhh
Q psy4538 137 RCEIVTKLLRN 147 (343)
Q Consensus 137 r~~il~~~l~~ 147 (343)
..++++.++++
T Consensus 155 ~~~~~~~~f~~ 165 (166)
T PF05729_consen 155 IKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHhhc
Confidence 99999988764
No 256
>PRK15115 response regulator GlrR; Provisional
Probab=98.68 E-value=3.2e-07 Score=87.81 Aligned_cols=163 Identities=21% Similarity=0.325 Sum_probs=102.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchHHHHHHHHHHH---------------HHhcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEGEKMVRALFAV---------------ASVHQPSIIF 62 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~---------------~~~~~p~vl~ 62 (343)
++++|++||||+++|+++.... +.+|+.++|..+..... -..+|.. .....++.||
T Consensus 160 vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ 233 (444)
T PRK15115 160 VLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL------ESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 (444)
T ss_pred EEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH------HHHhcCCCcCCCCCCccCCCCcEEECCCCEEE
Confidence 5799999999999999998765 47999999987633211 1111110 1122357999
Q ss_pred ecccccccccCCCCchhHHHHHHHHHHHhhccCCCC-------CCCcEEEEEecCCCchhhHHHH---------hccceE
Q psy4538 63 IDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTL-------DDDLVLVIGATNRPQELDEAAR---------RRLVKR 126 (343)
Q Consensus 63 iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~v~vi~~tn~~~~l~~~l~---------~rf~~~ 126 (343)
|||+|.|.. .....++..++..... ....+.+|++|+.. +...+. .|+. .
T Consensus 234 l~~i~~l~~-----------~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~~~~f~~~l~~~l~-~ 299 (444)
T PRK15115 234 LDEIGDMPA-----------PLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMARGEFREDLYYRLN-V 299 (444)
T ss_pred EEccccCCH-----------HHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHHcCCccHHHHHhhc-e
Confidence 999998842 2334455544432110 11256788888752 333333 2333 4
Q ss_pred EEEcCCCHHHHHH----HHHHHHhhh----C---CCCChhhHHHHHHHCCCCCHHHHHHHHHHHhccc
Q psy4538 127 LYIPLPDEQARCE----IVTKLLRNI----T---NSLTVDDIEEVGRMTTDFSGADMASLCREASLGP 183 (343)
Q Consensus 127 i~~~~P~~~er~~----il~~~l~~~----~---~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a 183 (343)
+.+..|...+|.+ ++++++... + ..++++.+..|..+....+.++++++++.++..+
T Consensus 300 ~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~ 367 (444)
T PRK15115 300 VSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT 367 (444)
T ss_pred eeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 5666676766643 344554432 2 2478889999999887789999999999987544
No 257
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.68 E-value=3.4e-07 Score=83.72 Aligned_cols=80 Identities=25% Similarity=0.297 Sum_probs=58.9
Q ss_pred CCcEEEecccccccccCCCCchhHHHHHHHHHHHhhcc---------CCCCCCCcEEEEEecCCC-chhhHHHHhccceE
Q psy4538 57 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDG---------ASTLDDDLVLVIGATNRP-QELDEAARRRLVKR 126 (343)
Q Consensus 57 ~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~---------~~~~~~~~v~vi~~tn~~-~~l~~~l~~rf~~~ 126 (343)
+..||++||+..|. .+++..|+..+.. .+.....++++|+|+|+- ..|.+.++.||...
T Consensus 144 nRGIlYvDEvnlL~-----------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~ 212 (423)
T COG1239 144 NRGILYVDEVNLLD-----------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLE 212 (423)
T ss_pred cCCEEEEecccccc-----------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcce
Confidence 34699999999773 3445555554443 333345678999999985 48899999999999
Q ss_pred EEEcCC-CHHHHHHHHHHHHhh
Q psy4538 127 LYIPLP-DEQARCEIVTKLLRN 147 (343)
Q Consensus 127 i~~~~P-~~~er~~il~~~l~~ 147 (343)
+.+..| +.++|.+|..+.+.-
T Consensus 213 v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 213 VDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred eeccCCCCHHHHHHHHHHHHHh
Confidence 988666 678999998877653
No 258
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.68 E-value=1.2e-07 Score=82.51 Aligned_cols=67 Identities=21% Similarity=0.326 Sum_probs=47.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchH---HHHHHHHHHHHHhcCCcEEEecccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEG---EKMVRALFAVASVHQPSIIFIDEIDSL 69 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~---~~~l~~~~~~~~~~~p~vl~iDeid~l 69 (343)
++|+|+||||||+|+.++|+++ |..++.++..++........ ......++... ....+|+|||++..
T Consensus 102 ~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDig~~ 174 (244)
T PRK07952 102 FIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDEIGVQ 174 (244)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeCCCCC
Confidence 4799999999999999999988 67888888877764322111 11122333332 35789999999875
No 259
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.66 E-value=6.9e-09 Score=86.87 Aligned_cols=22 Identities=45% Similarity=0.934 Sum_probs=19.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+|++||||||||++|+.+...+
T Consensus 25 lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 25 LLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp EEEES-CCCTHHHHHHHHHHCS
T ss_pred eEEECCCCCCHHHHHHHHHHhC
Confidence 5899999999999999999876
No 260
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.66 E-value=4.2e-07 Score=82.63 Aligned_cols=65 Identities=22% Similarity=0.297 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhccCCCCC-------CCcEEEEEecCCCc-------hhhHHHHhccceEEEEcCC-CHHHHHHHHHHHHh
Q psy4538 82 RRLKTEFLISLDGASTLD-------DDLVLVIGATNRPQ-------ELDEAARRRLVKRLYIPLP-DEQARCEIVTKLLR 146 (343)
Q Consensus 82 ~~~~~~ll~~l~~~~~~~-------~~~v~vi~~tn~~~-------~l~~~l~~rf~~~i~~~~P-~~~er~~il~~~l~ 146 (343)
.+.+..|+..++...-.. .-..++|+++|..+ ...+++++|+. .+.+|.| +..+-.+|.++.+.
T Consensus 250 ~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~-~i~vpY~l~~~~E~~Iy~k~~~ 328 (361)
T smart00763 250 IKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRII-KVKVPYCLRVSEEAQIYEKLLR 328 (361)
T ss_pred HHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceE-EEeCCCcCCHHHHHHHHHHHhc
Confidence 456667777666433211 12257888988873 55788999998 8888887 55677788888776
Q ss_pred h
Q psy4538 147 N 147 (343)
Q Consensus 147 ~ 147 (343)
.
T Consensus 329 ~ 329 (361)
T smart00763 329 N 329 (361)
T ss_pred c
Confidence 4
No 261
>PRK06526 transposase; Provisional
Probab=98.65 E-value=5e-08 Score=85.69 Aligned_cols=68 Identities=18% Similarity=0.369 Sum_probs=43.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccch-HHHHHHHHHHHHHhcCCcEEEeccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGE-GEKMVRALFAVASVHQPSIIFIDEIDSLL 70 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~-~~~~l~~~~~~~~~~~p~vl~iDeid~l~ 70 (343)
++|+||||||||+++.+++.++ |..++..++.++....... ....+...+.. ...+.+|+|||++.+.
T Consensus 101 lll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 101 VVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYIP 172 (254)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccCC
Confidence 5899999999999999998875 6666666666554332110 00111122222 2457899999999763
No 262
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.64 E-value=1.1e-07 Score=75.93 Aligned_cols=103 Identities=22% Similarity=0.395 Sum_probs=61.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC---cEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA---TFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQE 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~---~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~ 77 (343)
|+|+|++||||+++|+++....+. +++.++|.... ..++..+ .++.|+|+|+|.+.
T Consensus 24 vli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~------- 82 (138)
T PF14532_consen 24 VLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLS------- 82 (138)
T ss_dssp EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS--------
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCC-------
Confidence 589999999999999999987753 55555555432 2233333 57899999999883
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEec--CCCc-----hhhHHHHhccc-eEEEEcC
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGAT--NRPQ-----ELDEAARRRLV-KRLYIPL 131 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~t--n~~~-----~l~~~l~~rf~-~~i~~~~ 131 (343)
......++..+.... ..++.+|+++ +... .+.+.+..++. ..|.+|+
T Consensus 83 ----~~~Q~~L~~~l~~~~---~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lPp 137 (138)
T PF14532_consen 83 ----PEAQRRLLDLLKRQE---RSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLPP 137 (138)
T ss_dssp ----HHHHHHHHHHHHHCT---TTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE--
T ss_pred ----HHHHHHHHHHHHhcC---CCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCCC
Confidence 233334444444322 2223444444 3222 45667777776 5566664
No 263
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=6.1e-07 Score=79.62 Aligned_cols=113 Identities=19% Similarity=0.199 Sum_probs=76.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc----------------EEEEecccccccccchHHHHHHHHHHHHH----hcCCcE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT----------------FFCISASTLTSKWYGEGEKMVRALFAVAS----VHQPSI 60 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~----------------~~~v~~~~l~~~~~~~~~~~l~~~~~~~~----~~~p~v 60 (343)
.||+||+|+||+.+|.++|..+-+. ++.+.+..- +.. -.-..++.+..... .....|
T Consensus 22 yLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~-~~~--I~idqiR~l~~~~~~~p~e~~~kv 98 (290)
T PRK05917 22 IILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK-GRL--HSIETPRAIKKQIWIHPYESPYKI 98 (290)
T ss_pred EeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC-CCc--CcHHHHHHHHHHHhhCccCCCceE
Confidence 3799999999999999999987442 111211100 000 11233444444432 233469
Q ss_pred EEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 61 IFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 61 l~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
++||++|.+- ....+.++..++.. ...+++|..|+.++.+.|.++||+. .+.|+++
T Consensus 99 ~ii~~ad~mt-----------~~AaNaLLK~LEEP----p~~~~fiL~~~~~~~ll~TI~SRcq-~~~~~~~ 154 (290)
T PRK05917 99 YIIHEADRMT-----------LDAISAFLKVLEDP----PQHGVIILTSAKPQRLPPTIRSRSL-SIHIPME 154 (290)
T ss_pred EEEechhhcC-----------HHHHHHHHHHhhcC----CCCeEEEEEeCChhhCcHHHHhcce-EEEccch
Confidence 9999999883 34567788888874 5567888888899999999999997 6777664
No 264
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.63 E-value=4e-07 Score=78.70 Aligned_cols=129 Identities=18% Similarity=0.120 Sum_probs=72.1
Q ss_pred EEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhHH
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENETS 81 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~~ 81 (343)
.++||+|||||.+++.+|+.+|.+++.++|++..+ ...+.+++.-+.. .++.+++||++.+-... -...
T Consensus 36 ~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~-~GaW~cfdefnrl~~~v----LS~i 104 (231)
T PF12774_consen 36 ALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQ-SGAWLCFDEFNRLSEEV----LSVI 104 (231)
T ss_dssp EEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHH-HT-EEEEETCCCSSHHH----HHHH
T ss_pred CCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhh-cCchhhhhhhhhhhHHH----HHHH
Confidence 47899999999999999999999999999988633 3456666665543 47899999999883110 0011
Q ss_pred HHHHHHHHHhhccCCCC---------CCCcEEEEEecCC----CchhhHHHHhccceEEEEcCCCHHHHHHHHH
Q psy4538 82 RRLKTEFLISLDGASTL---------DDDLVLVIGATNR----PQELDEAARRRLVKRLYIPLPDEQARCEIVT 142 (343)
Q Consensus 82 ~~~~~~ll~~l~~~~~~---------~~~~v~vi~~tn~----~~~l~~~l~~rf~~~i~~~~P~~~er~~il~ 142 (343)
...+..+...+...... -+...-+..|.|. ...+|+.++.-|. .+.+..||.....+++-
T Consensus 105 ~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFR-pvam~~PD~~~I~ei~L 177 (231)
T PF12774_consen 105 SQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFR-PVAMMVPDLSLIAEILL 177 (231)
T ss_dssp HHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEE-EEE--S--HHHHHHHHH
T ss_pred HHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhh-eeEEeCCCHHHHHHHHH
Confidence 11122222222221110 0112233345542 3578888887776 78889999877766653
No 265
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.61 E-value=2e-07 Score=73.42 Aligned_cols=70 Identities=23% Similarity=0.406 Sum_probs=45.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc--------CCcEEEEeccccccc--------------cc--chHHHHHHHHHHHHHhc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC--------KATFFCISASTLTSK--------------WY--GEGEKMVRALFAVASVH 56 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l--------~~~~~~v~~~~l~~~--------------~~--~~~~~~l~~~~~~~~~~ 56 (343)
++++||+|+|||++++.++..+ +.+++.+++....+. .. .........+.+.....
T Consensus 7 ~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~~ 86 (131)
T PF13401_consen 7 LVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDRR 86 (131)
T ss_dssp EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHHC
T ss_pred cEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhc
Confidence 4799999999999999999987 677787776543310 00 11223333344444444
Q ss_pred CCcEEEeccccccc
Q psy4538 57 QPSIIFIDEIDSLL 70 (343)
Q Consensus 57 ~p~vl~iDeid~l~ 70 (343)
...+|+|||+|.+.
T Consensus 87 ~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 87 RVVLLVIDEADHLF 100 (131)
T ss_dssp TEEEEEEETTHHHH
T ss_pred CCeEEEEeChHhcC
Confidence 44599999999874
No 266
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.61 E-value=2.4e-07 Score=82.24 Aligned_cols=139 Identities=17% Similarity=0.226 Sum_probs=76.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcE---EEEecccccccccchHHHHHHHHHHHHH-----------hcCCcEEEeccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATF---FCISASTLTSKWYGEGEKMVRALFAVAS-----------VHQPSIIFIDEI 66 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~---~~v~~~~l~~~~~~~~~~~l~~~~~~~~-----------~~~p~vl~iDei 66 (343)
+||+||+|||||.+++.+-..+...- ..++++.. .+...++.+.+... ..+..|+||||+
T Consensus 36 vLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDl 109 (272)
T PF12775_consen 36 VLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDL 109 (272)
T ss_dssp EEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETT
T ss_pred EEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEeccc
Confidence 58999999999999999887764322 23333221 22223333322110 112459999999
Q ss_pred ccccccCCCCchhHHHHHHHHHHHhhccCCCC-----CCCcEEEEEecCCCc---hhhHHHHhccceEEEEcCCCHHHHH
Q psy4538 67 DSLLCQRSDQENETSRRLKTEFLISLDGASTL-----DDDLVLVIGATNRPQ---ELDEAARRRLVKRLYIPLPDEQARC 138 (343)
Q Consensus 67 d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----~~~~v~vi~~tn~~~---~l~~~l~~rf~~~i~~~~P~~~er~ 138 (343)
..-....-. ....-.++.+++..-...... .-..+.+++++++.. .+++.+.|.|. .+.++.|+.++..
T Consensus 110 N~p~~d~yg--tq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~-i~~~~~p~~~sl~ 186 (272)
T PF12775_consen 110 NMPQPDKYG--TQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFN-ILNIPYPSDESLN 186 (272)
T ss_dssp T-S---TTS----HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEE-EEE----TCCHHH
T ss_pred CCCCCCCCC--CcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheE-EEEecCCChHHHH
Confidence 854332211 122234444444332211111 113467788887543 47888888776 8899999999999
Q ss_pred HHHHHHHhhh
Q psy4538 139 EIVTKLLRNI 148 (343)
Q Consensus 139 ~il~~~l~~~ 148 (343)
.|+..++...
T Consensus 187 ~If~~il~~~ 196 (272)
T PF12775_consen 187 TIFSSILQSH 196 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 9988887653
No 267
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.59 E-value=2.4e-07 Score=90.33 Aligned_cols=190 Identities=12% Similarity=0.046 Sum_probs=111.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC--cEEEEecccccccccchHHHHHHHHHHHH---------HhcCCcEEEecccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA--TFFCISASTLTSKWYGEGEKMVRALFAVA---------SVHQPSIIFIDEIDSL 69 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~--~~~~v~~~~l~~~~~~~~~~~l~~~~~~~---------~~~~p~vl~iDeid~l 69 (343)
|+|.|++|+|||+++++++..+.. +|..+..+.-.....|... +...+... ...+..||||||+..+
T Consensus 28 v~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~D--l~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 28 VVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLD--LAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred EEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCch--HHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 589999999999999999999854 7766654433333333221 11111111 1123579999999976
Q ss_pred cccCCCCchhHHHHHHHHHHHhhccC---------CCCCCCcEEEEEecCCC---chhhHHHHhccceEEEEcCCCHHHH
Q psy4538 70 LCQRSDQENETSRRLKTEFLISLDGA---------STLDDDLVLVIGATNRP---QELDEAARRRLVKRLYIPLPDEQAR 137 (343)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~v~vi~~tn~~---~~l~~~l~~rf~~~i~~~~P~~~er 137 (343)
- .+++..|+.-|+.. ...-..++++|++.|.. ..++++++.||...+.++.|+..+.
T Consensus 106 ~-----------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~~ 174 (584)
T PRK13406 106 E-----------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRDA 174 (584)
T ss_pred C-----------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHHh
Confidence 3 45566666666532 11224567888874432 4588999999999999998876543
Q ss_pred H-------HHHHHHHhhhCCCCChhhHHHHHHHC--CCC-CHHHHHHHHHHHhcccccccccccccccCCcccChhHHHH
Q psy4538 138 C-------EIVTKLLRNITNSLTVDDIEEVGRMT--TDF-SGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRD 207 (343)
Q Consensus 138 ~-------~il~~~l~~~~~~~~~~~~~~la~~t--~g~-s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~ 207 (343)
. +|....-.-....+++..++.+++.+ .|. +.+--..+++.|...|.-+ +...|+.+|+.+
T Consensus 175 ~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~---------Gr~~V~~~dv~~ 245 (584)
T PRK13406 175 REIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALA---------GRTAVEEEDLAL 245 (584)
T ss_pred cccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHc---------CCCCCCHHHHHH
Confidence 2 22221111012445666666655433 232 4444444555443333222 345677888877
Q ss_pred HHHhc
Q psy4538 208 ALKTV 212 (343)
Q Consensus 208 a~~~~ 212 (343)
++.-+
T Consensus 246 Aa~lv 250 (584)
T PRK13406 246 AARLV 250 (584)
T ss_pred HHHHH
Confidence 76643
No 268
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.57 E-value=1.7e-07 Score=82.32 Aligned_cols=67 Identities=25% Similarity=0.462 Sum_probs=47.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchHHH--HHHHHHHHHHhcCCcEEEecccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEGEK--MVRALFAVASVHQPSIIFIDEIDSL 69 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~~~--~l~~~~~~~~~~~p~vl~iDeid~l 69 (343)
++|+||||+|||+||-++++++ |..++.++..++.......... .-..+... .....+|+|||+...
T Consensus 108 l~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~--l~~~dlLIiDDlG~~ 179 (254)
T COG1484 108 LVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE--LKKVDLLIIDDIGYE 179 (254)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH--hhcCCEEEEecccCc
Confidence 5899999999999999999987 7888899988886653222111 11111111 245779999999865
No 269
>PRK09183 transposase/IS protein; Provisional
Probab=98.57 E-value=2.3e-07 Score=81.91 Aligned_cols=68 Identities=25% Similarity=0.384 Sum_probs=45.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccch-HHHHHHHHHHHHHhcCCcEEEecccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGE-GEKMVRALFAVASVHQPSIIFIDEIDSL 69 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~-~~~~l~~~~~~~~~~~p~vl~iDeid~l 69 (343)
++|+||||||||+++.+++.++ |..+..+++.++....... ....+...+... ...+.+++|||++..
T Consensus 105 v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 105 IVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 5799999999999999997764 6677777776665332111 111233344332 245789999999865
No 270
>KOG1970|consensus
Probab=98.57 E-value=4.2e-06 Score=78.65 Aligned_cols=168 Identities=14% Similarity=0.168 Sum_probs=92.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccc-------cccc------ccchHHHHHHHHHHHH------------Hh
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISAST-------LTSK------WYGEGEKMVRALFAVA------------SV 55 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~-------l~~~------~~~~~~~~l~~~~~~~------------~~ 55 (343)
+||+||+||||||.++.+++++|..+++.+..- +... .....-.........+ ..
T Consensus 113 LLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~ 192 (634)
T KOG1970|consen 113 LLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLR 192 (634)
T ss_pred EEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccc
Confidence 589999999999999999999999988876321 1110 0000000111111111 11
Q ss_pred cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEec-CCCchhhH------HHHh--ccceE
Q psy4538 56 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGAT-NRPQELDE------AARR--RLVKR 126 (343)
Q Consensus 56 ~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~t-n~~~~l~~------~l~~--rf~~~ 126 (343)
..+.+|++||+-..+... ..+.+..++..+-.. ...+++++.|- ..++.-++ .+.. |. ..
T Consensus 193 ~~~~liLveDLPn~~~~d-------~~~~f~evL~~y~s~---g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~ 261 (634)
T KOG1970|consen 193 TDKKLILVEDLPNQFYRD-------DSETFREVLRLYVSI---GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SN 261 (634)
T ss_pred cCceEEEeeccchhhhhh-------hHHHHHHHHHHHHhc---CCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ce
Confidence 246689999998765431 122333333332222 23333333332 22232221 1222 33 36
Q ss_pred EEEcCCCHHHHHHHHHHHHhhhCCCCC------hhhHHHHHHHCCCCCHHHHHHHHHHHhccc
Q psy4538 127 LYIPLPDEQARCEIVTKLLRNITNSLT------VDDIEEVGRMTTDFSGADMASLCREASLGP 183 (343)
Q Consensus 127 i~~~~P~~~er~~il~~~l~~~~~~~~------~~~~~~la~~t~g~s~~dl~~l~~~a~~~a 183 (343)
|.|.+-...-..+.+...+...+...+ ...++.++.... +||+.+++.-.+.+
T Consensus 262 IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s~----GDIRsAInsLQlss 320 (634)
T KOG1970|consen 262 ISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQGSG----GDIRSAINSLQLSS 320 (634)
T ss_pred EeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHhcC----ccHHHHHhHhhhhc
Confidence 788777777777788888776655544 345555665544 59999888776554
No 271
>PRK06921 hypothetical protein; Provisional
Probab=98.57 E-value=3.5e-07 Score=81.01 Aligned_cols=65 Identities=20% Similarity=0.322 Sum_probs=42.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----CCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----KATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDS 68 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~ 68 (343)
++|+||+|+|||+|+.++|+++ |..+++++..++........ ......+. ......+|+|||++.
T Consensus 120 l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~--~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 120 IALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLN--RMKKVEVLFIDDLFK 188 (266)
T ss_pred EEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHH--HhcCCCEEEEecccc
Confidence 5899999999999999999976 56677777665543321111 11111112 224577999999953
No 272
>KOG1968|consensus
Probab=98.49 E-value=3.3e-07 Score=92.37 Aligned_cols=164 Identities=18% Similarity=0.197 Sum_probs=110.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchH-------HHHHHHHH---HH--HHhcCCcEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEG-------EKMVRALF---AV--ASVHQPSIIFIDEIDS 68 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~-------~~~l~~~~---~~--~~~~~p~vl~iDeid~ 68 (343)
++++||||.|||+.++.+|.++|..+++.|+++..++..... ...+...+ .. .......||++||+|.
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 378999999999999999999999999999998776543211 11122222 00 0111123899999998
Q ss_pred ccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhh
Q psy4538 69 LLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNI 148 (343)
Q Consensus 69 l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~ 148 (343)
++... +.....+...+.. ...-+|+++|...........+....++|+.|+..++...+...+...
T Consensus 440 ~~~~d--------Rg~v~~l~~l~~k------s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se 505 (871)
T KOG1968|consen 440 MFGED--------RGGVSKLSSLCKK------SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSE 505 (871)
T ss_pred ccchh--------hhhHHHHHHHHHh------ccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhccc
Confidence 86511 1122223333321 123466677776666554445555679999999999999999999888
Q ss_pred CCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcc
Q psy4538 149 TNSLTVDDIEEVGRMTTDFSGADMASLCREASLG 182 (343)
Q Consensus 149 ~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~ 182 (343)
...+++..++.+.+.+ ++||++.+..-...
T Consensus 506 ~~ki~~~~l~~~s~~~----~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 506 GIKISDDVLEEISKLS----GGDIRQIIMQLQFW 535 (871)
T ss_pred ceecCcHHHHHHHHhc----ccCHHHHHHHHhhh
Confidence 8888888999999866 46888877665433
No 273
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.45 E-value=1e-05 Score=69.36 Aligned_cols=174 Identities=17% Similarity=0.169 Sum_probs=102.1
Q ss_pred EEeCCCCchHHHHHHHHHHHcCCc---EEEEeccccc-----ccccc------------hHHHHHHHHHHHHHh-cCCcE
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCKAT---FFCISASTLT-----SKWYG------------EGEKMVRALFAVASV-HQPSI 60 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~~~---~~~v~~~~l~-----~~~~~------------~~~~~l~~~~~~~~~-~~p~v 60 (343)
.++|+-|+|||+++|++...++-. .+.++...+. ..+.. ..++.-+.+....+. ..|.+
T Consensus 55 ~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v~ 134 (269)
T COG3267 55 AVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPVV 134 (269)
T ss_pred EEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCeE
Confidence 589999999999999777766421 2233322211 00000 111122222233332 34689
Q ss_pred EEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhh----HHHHhccceEEEEcCCCHHH
Q psy4538 61 IFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELD----EAARRRLVKRLYIPLPDEQA 136 (343)
Q Consensus 61 l~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~----~~l~~rf~~~i~~~~P~~~e 136 (343)
+++||++.+... .-..+.-|.+.-.+.+. .-.++++|-..-...+. ..+.+|+...|++++.+.++
T Consensus 135 l~vdEah~L~~~--------~le~Lrll~nl~~~~~~--~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 135 LMVDEAHDLNDS--------ALEALRLLTNLEEDSSK--LLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred EeehhHhhhChh--------HHHHHHHHHhhcccccC--ceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 999999987421 11222222222222221 23356665542222221 23444888779999999999
Q ss_pred HHHHHHHHHhhhC---CCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccc
Q psy4538 137 RCEIVTKLLRNIT---NSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRS 186 (343)
Q Consensus 137 r~~il~~~l~~~~---~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~ 186 (343)
...+++..++.-+ ..++++.+..+...+.| .|+-+.++|..|...|...
T Consensus 205 t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a 256 (269)
T COG3267 205 TGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSA 256 (269)
T ss_pred HHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHc
Confidence 9999999987643 23467788888888888 6888999998887666543
No 274
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.45 E-value=3e-07 Score=82.96 Aligned_cols=67 Identities=15% Similarity=0.288 Sum_probs=45.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchH-HHHHHHHHHHHHhcCCcEEEecccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEG-EKMVRALFAVASVHQPSIIFIDEIDSL 69 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~-~~~l~~~~~~~~~~~p~vl~iDeid~l 69 (343)
++|+||+|+|||+|+.++|+++ |..+..+...++........ .......+.. .....+|+|||+..-
T Consensus 159 l~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~--l~~~dlLiIDDiG~e 229 (306)
T PRK08939 159 LYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDA--VKEAPVLMLDDIGAE 229 (306)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHH--hcCCCEEEEecCCCc
Confidence 5799999999999999999988 77788888777654322111 1112222332 235779999999754
No 275
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.44 E-value=1.2e-07 Score=78.81 Aligned_cols=67 Identities=24% Similarity=0.462 Sum_probs=44.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchH-HHHHHHHHHHHHhcCCcEEEecccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEG-EKMVRALFAVASVHQPSIIFIDEIDSL 69 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~-~~~l~~~~~~~~~~~p~vl~iDeid~l 69 (343)
++|+||+|+|||++|.++++++ |..+..++..++........ .......+... ....+|+|||+...
T Consensus 50 l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l--~~~dlLilDDlG~~ 120 (178)
T PF01695_consen 50 LILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRL--KRVDLLILDDLGYE 120 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHH--HTSSCEEEETCTSS
T ss_pred EEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcc--ccccEeccccccee
Confidence 5799999999999999999876 78888888887754322110 01112223332 34679999999743
No 276
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.42 E-value=2.4e-06 Score=69.53 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=46.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccc----------------------c--chHHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKW----------------------Y--GEGEKMVRALFAVA 53 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~----------------------~--~~~~~~l~~~~~~~ 53 (343)
++|+||||+|||+++..++..+ +.+++.++........ . .............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 4799999999999999998887 4566666654332100 0 00111112223444
Q ss_pred HhcCCcEEEeccccccccc
Q psy4538 54 SVHQPSIIFIDEIDSLLCQ 72 (343)
Q Consensus 54 ~~~~p~vl~iDeid~l~~~ 72 (343)
....+.+++|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 5567889999999988643
No 277
>CHL00181 cbbX CbbX; Provisional
Probab=98.41 E-value=3.1e-07 Score=82.30 Aligned_cols=74 Identities=18% Similarity=0.244 Sum_probs=56.7
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcc-----cccHHHHHhhhceEeccC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ-----ELDEAARRRLVKRLYIPL 298 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~-----~lD~allRR~d~~i~~~~ 298 (343)
.++||||||+|+++.++++ +.++..++++|+..|+.... + ++||+|++... .++|+|.|||+.+|+|+.
T Consensus 122 ~ggVLfIDE~~~l~~~~~~--~~~~~e~~~~L~~~me~~~~--~--~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~ 195 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNE--RDYGSEAIEILLQVMENQRD--D--LVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPD 195 (287)
T ss_pred cCCEEEEEccchhccCCCc--cchHHHHHHHHHHHHhcCCC--C--EEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCC
Confidence 3579999999999875543 34567899999999986542 3 77888876432 236999999999999999
Q ss_pred CCCCC
Q psy4538 299 PDEQK 303 (343)
Q Consensus 299 P~~~~ 303 (343)
++.++
T Consensus 196 ~t~~e 200 (287)
T CHL00181 196 YTPEE 200 (287)
T ss_pred cCHHH
Confidence 88643
No 278
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.41 E-value=2e-06 Score=77.24 Aligned_cols=155 Identities=14% Similarity=0.055 Sum_probs=81.8
Q ss_pred CEEeCCCCchHHHHHHHHHHH--cCCc---EEEEecccccc--------------c-----ccchHHHHHHHHHHHHHhc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ--CKAT---FFCISASTLTS--------------K-----WYGEGEKMVRALFAVASVH 56 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~--l~~~---~~~v~~~~l~~--------------~-----~~~~~~~~l~~~~~~~~~~ 56 (343)
|.|+|++|+|||++|+.+++. .... .++++...-.. . ....... ....+......
T Consensus 22 v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~~l~~~L~~ 100 (287)
T PF00931_consen 22 VAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEE-LQDQLRELLKD 100 (287)
T ss_dssp EEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHH-HHHHHHHHHCC
T ss_pred EEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccchhhhcc
Confidence 479999999999999999987 3322 23444322110 0 0111222 33333333345
Q ss_pred CCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHH
Q psy4538 57 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQA 136 (343)
Q Consensus 57 ~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~e 136 (343)
.+++|+||+++... ....+...+... ..+.-+|.||+..... ...... ...+.++..+.++
T Consensus 101 ~~~LlVlDdv~~~~-------------~~~~l~~~~~~~----~~~~kilvTTR~~~v~-~~~~~~-~~~~~l~~L~~~e 161 (287)
T PF00931_consen 101 KRCLLVLDDVWDEE-------------DLEELREPLPSF----SSGSKILVTTRDRSVA-GSLGGT-DKVIELEPLSEEE 161 (287)
T ss_dssp TSEEEEEEEE-SHH-------------HH-------HCH----HSS-EEEEEESCGGGG-TTHHSC-EEEEECSS--HHH
T ss_pred ccceeeeeeecccc-------------cccccccccccc----cccccccccccccccc-cccccc-ccccccccccccc
Confidence 58999999998541 111122111111 1123455577654322 111111 4578999999999
Q ss_pred HHHHHHHHHhhhC---CCCChhhHHHHHHHCCCCCHHHHHHHH
Q psy4538 137 RCEIVTKLLRNIT---NSLTVDDIEEVGRMTTDFSGADMASLC 176 (343)
Q Consensus 137 r~~il~~~l~~~~---~~~~~~~~~~la~~t~g~s~~dl~~l~ 176 (343)
-.+++........ ....+.....+++.+.| .|-.|..+.
T Consensus 162 a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~a 203 (287)
T PF00931_consen 162 ALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLIA 203 (287)
T ss_dssp HHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 9999998876543 12223467788998886 455555443
No 279
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.40 E-value=5.2e-06 Score=79.41 Aligned_cols=165 Identities=18% Similarity=0.255 Sum_probs=99.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchHHHHHHHHHHH---------------HHhcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEGEKMVRALFAV---------------ASVHQPSIIF 62 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~---------------~~~~~p~vl~ 62 (343)
++++|.+|+||+++++++.... +.+|+.++|..+..... + ..+|.. .....++.||
T Consensus 165 vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~---~---~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ 238 (441)
T PRK10365 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLL---E---SELFGHEKGAFTGADKRREGRFVEADGGTLF 238 (441)
T ss_pred EEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHH---H---HHhcCCCCCCcCCCCcCCCCceeECCCCEEE
Confidence 5789999999999999997654 47899999987643211 1 111110 1123467999
Q ss_pred ecccccccccCCCCchhHHHHHHHHHHHhhccCCCC-------CCCcEEEEEecCCCc-------hhhHHHHhccceEEE
Q psy4538 63 IDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTL-------DDDLVLVIGATNRPQ-------ELDEAARRRLVKRLY 128 (343)
Q Consensus 63 iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~v~vi~~tn~~~-------~l~~~l~~rf~~~i~ 128 (343)
|||++.+.. .....++..++..... ....+.+|++|+..- .+.+.+..|+. .+.
T Consensus 239 ldei~~l~~-----------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~-~~~ 306 (441)
T PRK10365 239 LDEIGDISP-----------MMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN-VVA 306 (441)
T ss_pred EeccccCCH-----------HHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhc-cce
Confidence 999998842 2233444444432110 112356777775532 22333333443 355
Q ss_pred EcCCCHHHHH----HHHHHHHhhh----C---CCCChhhHHHHHHHCCCCCHHHHHHHHHHHhccc
Q psy4538 129 IPLPDEQARC----EIVTKLLRNI----T---NSLTVDDIEEVGRMTTDFSGADMASLCREASLGP 183 (343)
Q Consensus 129 ~~~P~~~er~----~il~~~l~~~----~---~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a 183 (343)
+..|...+|. .++++++.++ . ..++++.+..|..+....+.++++++++.+...+
T Consensus 307 i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~ 372 (441)
T PRK10365 307 IEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLL 372 (441)
T ss_pred ecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC
Confidence 5555555554 3445555432 1 2368888888988886678899999999886543
No 280
>KOG0478|consensus
Probab=98.38 E-value=5.8e-06 Score=79.44 Aligned_cols=134 Identities=22% Similarity=0.254 Sum_probs=74.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHH-----HHHHHHHHH---HHhcCCcEEEeccccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGE-----KMVRALFAV---ASVHQPSIIFIDEIDSLLCQ 72 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~-----~~l~~~~~~---~~~~~p~vl~iDeid~l~~~ 72 (343)
|||+|.||||||.+.+.+.+.+..-.+ .+... +..+|.+. ..-+++.-+ ......++.+|||+|++..
T Consensus 465 ILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkG--sSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~d- 540 (804)
T KOG0478|consen 465 ILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKG--SSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSD- 540 (804)
T ss_pred EEEecCCCcCHHHHHHHHHHhCCccee-ecCCc--cchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhhH-
Confidence 699999999999999999988744322 22110 00000000 000111111 1124567999999999832
Q ss_pred CCCCchhHHHHHHHHHHHh------hccCCCCCCCcEEEEEecCCCc-------------hhhHHHHhccceE-EEEcCC
Q psy4538 73 RSDQENETSRRLKTEFLIS------LDGASTLDDDLVLVIGATNRPQ-------------ELDEAARRRLVKR-LYIPLP 132 (343)
Q Consensus 73 ~~~~~~~~~~~~~~~ll~~------l~~~~~~~~~~v~vi~~tn~~~-------------~l~~~l~~rf~~~-i~~~~P 132 (343)
..+.++.+.+.. .-++-..-+-+.-|++++|+.. .+++.|++||+.. +-++.|
T Consensus 541 -------StrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~ 613 (804)
T KOG0478|consen 541 -------STRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKP 613 (804)
T ss_pred -------HHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCc
Confidence 222222222221 1122122244566888888543 5789999999955 466888
Q ss_pred CHHHHHHHHHHHH
Q psy4538 133 DEQARCEIVTKLL 145 (343)
Q Consensus 133 ~~~er~~il~~~l 145 (343)
++..-+.+..+..
T Consensus 614 DE~~Dr~La~Hiv 626 (804)
T KOG0478|consen 614 DERSDRRLADHIV 626 (804)
T ss_pred chhHHHHHHHHHH
Confidence 8764445544443
No 281
>PHA00729 NTP-binding motif containing protein
Probab=98.37 E-value=1.8e-06 Score=73.69 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=21.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
++|+|+||||||++|.++++.++
T Consensus 20 IlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 20 AVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999876
No 282
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=2.6e-05 Score=70.05 Aligned_cols=137 Identities=10% Similarity=-0.013 Sum_probs=88.8
Q ss_pred EEeCCCCchHHHHHHHHHHHcCC-------------cEEEEecccccccccchHHHHHHHHHHHHHh-----cCCcEEEe
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCKA-------------TFFCISASTLTSKWYGEGEKMVRALFAVASV-----HQPSIIFI 63 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~~-------------~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~-----~~p~vl~i 63 (343)
||+|+.|.||+.+++.+++.+-+ .+..++.. +.. -....++.+.+.... ....|++|
T Consensus 22 Lf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~--i~vd~Ir~l~~~~~~~~~~~~~~KvvII 96 (299)
T PRK07132 22 LLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKD--LSKSEFLSAINKLYFSSFVQSQKKILII 96 (299)
T ss_pred EEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCc--CCHHHHHHHHHHhccCCcccCCceEEEE
Confidence 79999999999999999998732 12222210 110 112234444443321 25679999
Q ss_pred cccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHH
Q psy4538 64 DEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTK 143 (343)
Q Consensus 64 Deid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~ 143 (343)
|++|.+- ....+.++..++.. +..+++|.+|+.+..+-+.+++|+. .++|.+|+.++..+.+..
T Consensus 97 ~~~e~m~-----------~~a~NaLLK~LEEP----p~~t~~il~~~~~~kll~TI~SRc~-~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 97 KNIEKTS-----------NSLLNALLKTIEEP----PKDTYFLLTTKNINKVLPTIVSRCQ-VFNVKEPDQQKILAKLLS 160 (299)
T ss_pred ecccccC-----------HHHHHHHHHHhhCC----CCCeEEEEEeCChHhChHHHHhCeE-EEECCCCCHHHHHHHHHH
Confidence 9998772 23456788888775 4456666666677899999999997 899999998888766654
Q ss_pred HHhhhCCCCChhhHHHHHHHCC
Q psy4538 144 LLRNITNSLTVDDIEEVGRMTT 165 (343)
Q Consensus 144 ~l~~~~~~~~~~~~~~la~~t~ 165 (343)
. ..+++....++..+.
T Consensus 161 ~------~~~~~~a~~~a~~~~ 176 (299)
T PRK07132 161 K------NKEKEYNWFYAYIFS 176 (299)
T ss_pred c------CCChhHHHHHHHHcC
Confidence 2 234444444555544
No 283
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=6.8e-06 Score=71.47 Aligned_cols=116 Identities=11% Similarity=-0.009 Sum_probs=75.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEec--------------cccccccc---chHHHHHHHHHHHHH-----hcCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISA--------------STLTSKWY---GEGEKMVRALFAVAS-----VHQP 58 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~--------------~~l~~~~~---~~~~~~l~~~~~~~~-----~~~p 58 (343)
+||+||.|+||..+|.++|..+-+.--.-.| .++.--+. .-....++.+..... ....
T Consensus 10 ~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e~~~~ 89 (261)
T PRK05818 10 LLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVESNGK 89 (261)
T ss_pred eeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchhcCCC
Confidence 4899999999999999999877332100001 11110000 011223334333221 1235
Q ss_pred cEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 59 SIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 59 ~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
.|++|+++|.+- ....+.++..++.. ...+++|.+|+.++.+.+.++||+. .+.++.+
T Consensus 90 KV~II~~ae~m~-----------~~AaNaLLK~LEEP----p~~t~fiLit~~~~~lLpTI~SRCq-~~~~~~~ 147 (261)
T PRK05818 90 KIYIIYGIEKLN-----------KQSANSLLKLIEEP----PKNTYGIFTTRNENNILNTILSRCV-QYVVLSK 147 (261)
T ss_pred EEEEeccHhhhC-----------HHHHHHHHHhhcCC----CCCeEEEEEECChHhCchHhhhhee-eeecCCh
Confidence 799999999873 34567788888874 5567888899999999999999996 5667666
No 284
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=8.1e-07 Score=82.47 Aligned_cols=22 Identities=45% Similarity=0.872 Sum_probs=19.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+|++||||||||++|+.+...+
T Consensus 201 Ll~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 201 LLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred EEEecCCCCchHHhhhhhcccC
Confidence 5899999999999999987765
No 285
>KOG2228|consensus
Probab=98.31 E-value=2.5e-06 Score=75.57 Aligned_cols=134 Identities=20% Similarity=0.333 Sum_probs=80.4
Q ss_pred CEEeCCCCchHHHHHHHHHH---HcCCcEEEEecccccc---------------------cccchHHHHHHHHHHHHHh-
Q psy4538 1 ILLFGPPGTGKTLIGKCVAA---QCKATFFCISASTLTS---------------------KWYGEGEKMVRALFAVASV- 55 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~---~l~~~~~~v~~~~l~~---------------------~~~~~~~~~l~~~~~~~~~- 55 (343)
|++.||.|+|||++...... +.|-+++.+....... +..|.....+..++...+.
T Consensus 52 viiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~ 131 (408)
T KOG2228|consen 52 VIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKG 131 (408)
T ss_pred eEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcC
Confidence 58999999999987665533 5676777665433211 1122222333333332221
Q ss_pred ----cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCC---chhhHHHHhccceE-E
Q psy4538 56 ----HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRP---QELDEAARRRLVKR-L 127 (343)
Q Consensus 56 ----~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~---~~l~~~l~~rf~~~-i 127 (343)
..+.|+++||+|.+++.. .+.++..+-........++.+||.|.+. +.+...+.+||... |
T Consensus 132 ~~~t~~~ViFIldEfDlf~~h~-----------rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I 200 (408)
T KOG2228|consen 132 DETTSGKVIFILDEFDLFAPHS-----------RQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVI 200 (408)
T ss_pred CCCCCceEEEEeehhhccccch-----------hhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhccccee
Confidence 123466678999886542 1234444444444456788888887554 46677888899855 6
Q ss_pred EEcCC-CHHHHHHHHHHHH
Q psy4538 128 YIPLP-DEQARCEIVTKLL 145 (343)
Q Consensus 128 ~~~~P-~~~er~~il~~~l 145 (343)
+++++ ..++-.++++..+
T Consensus 201 ~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 201 FMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred eccCCCChHHHHHHHHHHh
Confidence 66554 5677777777776
No 286
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.30 E-value=7.3e-07 Score=79.89 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=56.2
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCC--ccc---ccHHHHHhhhceEeccC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNR--PQE---LDEAARRRLVKRLYIPL 298 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~--~~~---lD~allRR~d~~i~~~~ 298 (343)
.++||||||+|.+.++++ ...+...+.++|+..|+.... + +++|+||+. ++. ++|+|.|||+..|+||.
T Consensus 121 ~~gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~~~~--~--~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~ 194 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMENQRD--D--LVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPD 194 (284)
T ss_pred cCcEEEEechhhhccCCC--ccchHHHHHHHHHHHHhcCCC--C--EEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCC
Confidence 458999999999976543 234566789999999986432 3 777787664 454 38999999999999999
Q ss_pred CCCC
Q psy4538 299 PDEQ 302 (343)
Q Consensus 299 P~~~ 302 (343)
++.+
T Consensus 195 l~~e 198 (284)
T TIGR02880 195 YSEA 198 (284)
T ss_pred cCHH
Confidence 8754
No 287
>PRK08118 topology modulation protein; Reviewed
Probab=98.27 E-value=1.1e-05 Score=66.31 Aligned_cols=31 Identities=23% Similarity=0.492 Sum_probs=28.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISA 31 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~ 31 (343)
|+++||||+||||+|+.+++.++.+++.++.
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 5799999999999999999999999887764
No 288
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.25 E-value=3.3e-05 Score=69.22 Aligned_cols=169 Identities=22% Similarity=0.267 Sum_probs=106.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccccccccc-----chH--HHHHHHHHHHHHhcCCcEEEeccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWY-----GEG--EKMVRALFAVASVHQPSIIFIDEIDSLL 70 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~-----~~~--~~~l~~~~~~~~~~~p~vl~iDeid~l~ 70 (343)
+||.|.+||||-.+|+++-... ..||+.+||..+..... |.. .+.-..+|+.+. .+-+++|||..+
T Consensus 230 LLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~gk~GffE~An---gGTVlLDeIgEm- 305 (511)
T COG3283 230 LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDEGKKGFFEQAN---GGTVLLDEIGEM- 305 (511)
T ss_pred eEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCCCccchhhhcc---CCeEEeehhhhc-
Confidence 5899999999999999875544 67999999988754321 111 122244566554 568899999876
Q ss_pred ccCCCCchhHHHHHHHHHHHhhccCCCCC-------CCcEEEEEecCCCc-------hhhHHHHhccceEEEEcCCCHHH
Q psy4538 71 CQRSDQENETSRRLKTEFLISLDGASTLD-------DDLVLVIGATNRPQ-------ELDEAARRRLVKRLYIPLPDEQA 136 (343)
Q Consensus 71 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-------~~~v~vi~~tn~~~-------~l~~~l~~rf~~~i~~~~P~~~e 136 (343)
+.++...+++.+....-+. .-.|.||++|..+- .....+--|.. ++.+..|...+
T Consensus 306 ----------Sp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLN-VLtl~~PpLRe 374 (511)
T COG3283 306 ----------SPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLN-VLTLNLPPLRE 374 (511)
T ss_pred ----------CHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhh-eeeecCCcccc
Confidence 4567778888876543211 12478898885531 22222333444 44555555544
Q ss_pred HHH----HHH----HHHhhhC---CCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccc
Q psy4538 137 RCE----IVT----KLLRNIT---NSLTVDDIEEVGRMTTDFSGADMASLCREASLGPV 184 (343)
Q Consensus 137 r~~----il~----~~l~~~~---~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~ 184 (343)
|.+ +.+ .+..+.+ +.++.+.+..|.+.-.--+.+++.+++-.|+....
T Consensus 375 r~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~E 433 (511)
T COG3283 375 RPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLLE 433 (511)
T ss_pred CcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHHHhc
Confidence 432 222 2333332 35677788888887777789999999888865443
No 289
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=3.8e-05 Score=68.49 Aligned_cols=149 Identities=14% Similarity=0.143 Sum_probs=87.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE--Eec--------------ccccccc-cc--hHHHHHHHHHHHHH----hcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC--ISA--------------STLTSKW-YG--EGEKMVRALFAVAS----VHQ 57 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~--v~~--------------~~l~~~~-~~--~~~~~l~~~~~~~~----~~~ 57 (343)
.||+|| .||+++|+.+|..+-+.--. -.| .++.--. .| -.-..++.+..... ...
T Consensus 27 yLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~ 104 (290)
T PRK07276 27 YLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSGYEGK 104 (290)
T ss_pred eeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCcccCC
Confidence 479996 68999999999877432100 000 1110000 01 11234455444332 233
Q ss_pred CcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHH
Q psy4538 58 PSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQAR 137 (343)
Q Consensus 58 p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er 137 (343)
..|++||++|.+- ....+.|+..++.. ...+++|.+|+.++.+-|.++||+. .+.|+. +.++.
T Consensus 105 ~kV~II~~ad~m~-----------~~AaNaLLKtLEEP----p~~t~~iL~t~~~~~lLpTI~SRcq-~i~f~~-~~~~~ 167 (290)
T PRK07276 105 QQVFIIKDADKMH-----------VNAANSLLKVIEEP----QSEIYIFLLTNDENKVLPTIKSRTQ-IFHFPK-NEAYL 167 (290)
T ss_pred cEEEEeehhhhcC-----------HHHHHHHHHHhcCC----CCCeEEEEEECChhhCchHHHHcce-eeeCCC-cHHHH
Confidence 5799999999883 34567788888874 4557788888889999999999997 777765 44444
Q ss_pred HHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHH
Q psy4538 138 CEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLC 176 (343)
Q Consensus 138 ~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~ 176 (343)
.+++. ..+ .+......++.. .| +++....+.
T Consensus 168 ~~~L~----~~g--~~~~~a~~la~~-~~-s~~~A~~l~ 198 (290)
T PRK07276 168 IQLLE----QKG--LLKTQAELLAKL-AQ-STSEAEKLA 198 (290)
T ss_pred HHHHH----HcC--CChHHHHHHHHH-CC-CHHHHHHHh
Confidence 44443 222 333333344443 34 565555554
No 290
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.24 E-value=5e-05 Score=60.56 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=20.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+.++|+||+||||++..+++.+
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHH
Confidence 4789999999999999999887
No 291
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.23 E-value=1.2e-05 Score=79.34 Aligned_cols=99 Identities=17% Similarity=0.219 Sum_probs=59.2
Q ss_pred cEEEEEecCCC--chhhHHHHhccc---eEEEEcC--C-CHHHHHHHHHHHHhhh-----CCCCChhhHHHHHHHC---C
Q psy4538 102 LVLVIGATNRP--QELDEAARRRLV---KRLYIPL--P-DEQARCEIVTKLLRNI-----TNSLTVDDIEEVGRMT---T 165 (343)
Q Consensus 102 ~v~vi~~tn~~--~~l~~~l~~rf~---~~i~~~~--P-~~~er~~il~~~l~~~-----~~~~~~~~~~~la~~t---~ 165 (343)
.+.+|++++.. ..+++.|.+||. ..++|.. + +.+.+..+++...+.. ...++.+.+..+.+.. .
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~a 356 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRA 356 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHh
Confidence 45677777664 567899999986 4555543 2 3456666665444332 2356777766666532 1
Q ss_pred C------CCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHH
Q psy4538 166 D------FSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDAL 209 (343)
Q Consensus 166 g------~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~ 209 (343)
| +..++|..+++.|...|... +...++.+|+.++.
T Consensus 357 g~r~~lsl~~~~l~~l~r~a~~~a~~~---------~~~~i~~~~v~~a~ 397 (637)
T PRK13765 357 GRKGHLTLKLRDLGGLVRVAGDIARSE---------GAELTTAEHVLEAK 397 (637)
T ss_pred CCccccccCHHHHHHHHHHHHHHHHhh---------ccceecHHHHHHHH
Confidence 1 23678888998886555443 23345555655554
No 292
>PRK07261 topology modulation protein; Provisional
Probab=98.22 E-value=1.6e-05 Score=65.70 Aligned_cols=31 Identities=16% Similarity=0.445 Sum_probs=27.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISA 31 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~ 31 (343)
|+++|+||+||||+++.++..++.+++.++.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 5799999999999999999999988776554
No 293
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.22 E-value=8e-06 Score=80.14 Aligned_cols=136 Identities=24% Similarity=0.228 Sum_probs=72.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEE-ec---ccccccccchHHHHHHHHHHHH---HhcCCcEEEecccccccccC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI-SA---STLTSKWYGEGEKMVRALFAVA---SVHQPSIIFIDEIDSLLCQR 73 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v-~~---~~l~~~~~~~~~~~l~~~~~~~---~~~~p~vl~iDeid~l~~~~ 73 (343)
|||.|.||+|||.+.+.+++.+...++.- .+ ..+......... ...+.-++ ....++|++|||+|.+-.
T Consensus 322 ILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~--tge~~LeaGALVlAD~Gv~cIDEfdKm~~-- 397 (682)
T COG1241 322 ILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKV--TGEWVLEAGALVLADGGVCCIDEFDKMNE-- 397 (682)
T ss_pred EEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccC--CCeEEEeCCEEEEecCCEEEEEeccCCCh--
Confidence 68999999999999999999886544321 11 111111000000 00000001 123578999999998731
Q ss_pred CCCchhHHHHHHHHHHHhh------ccCCCCCCCcEEEEEecCCCc-------------hhhHHHHhccceEEE-EcCCC
Q psy4538 74 SDQENETSRRLKTEFLISL------DGASTLDDDLVLVIGATNRPQ-------------ELDEAARRRLVKRLY-IPLPD 133 (343)
Q Consensus 74 ~~~~~~~~~~~~~~ll~~l------~~~~~~~~~~v~vi~~tn~~~-------------~l~~~l~~rf~~~i~-~~~P~ 133 (343)
.....+.+.+..- .+....-+.+.-+++++|+.. .+++.+++||+..+. ...|+
T Consensus 398 ------~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d 471 (682)
T COG1241 398 ------EDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPD 471 (682)
T ss_pred ------HHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCC
Confidence 1122222222110 011111234455777787765 567889999995543 45677
Q ss_pred HHHHHHHHHHHHh
Q psy4538 134 EQARCEIVTKLLR 146 (343)
Q Consensus 134 ~~er~~il~~~l~ 146 (343)
.+.-+.+..+.+.
T Consensus 472 ~~~D~~ia~hil~ 484 (682)
T COG1241 472 EEKDEEIAEHILD 484 (682)
T ss_pred ccchHHHHHHHHH
Confidence 7655555554443
No 294
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.18 E-value=2.1e-06 Score=76.18 Aligned_cols=72 Identities=18% Similarity=0.265 Sum_probs=52.0
Q ss_pred cceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcc-----cccHHHHHhhhceEeccCC
Q psy4538 225 PSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ-----ELDEAARRRLVKRLYIPLP 299 (343)
Q Consensus 225 p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~-----~lD~allRR~d~~i~~~~P 299 (343)
++||||||+|.|.. + ........++.+|+..|+...+ + +++|++++..+ .++|++.+||+..|+||.+
T Consensus 106 ~~VL~IDE~~~L~~--~-~~~~~~~~~i~~Ll~~~e~~~~--~--~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~ 178 (261)
T TIGR02881 106 GGVLFIDEAYSLAR--G-GEKDFGKEAIDTLVKGMEDNRN--E--FVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDY 178 (261)
T ss_pred CCEEEEechhhhcc--C-CccchHHHHHHHHHHHHhccCC--C--EEEEecCCcchhHHHHhcChHHHhccceEEEECCC
Confidence 57999999999963 2 2223456789999999988643 3 55555554333 3789999999999999887
Q ss_pred CCCC
Q psy4538 300 DEQK 303 (343)
Q Consensus 300 ~~~~ 303 (343)
+.++
T Consensus 179 ~~~e 182 (261)
T TIGR02881 179 TVEE 182 (261)
T ss_pred CHHH
Confidence 7653
No 295
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.15 E-value=7.4e-06 Score=70.08 Aligned_cols=71 Identities=21% Similarity=0.348 Sum_probs=45.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccc-c----------------------chHHHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKW-Y----------------------GEGEKMVRALFAVAS 54 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~-~----------------------~~~~~~l~~~~~~~~ 54 (343)
++++||||+|||+++..++... +...++++...+.... . .+....+..+.....
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~ 94 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTSKFID 94 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHHHHHh
Confidence 4799999999999999988644 6678888876521000 0 001111333333344
Q ss_pred hcCCcEEEecccccccc
Q psy4538 55 VHQPSIIFIDEIDSLLC 71 (343)
Q Consensus 55 ~~~p~vl~iDeid~l~~ 71 (343)
...+++|+||-+..+..
T Consensus 95 ~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 95 RDSASLVVVDSFTALYR 111 (209)
T ss_pred hcCccEEEEeCcHHHhH
Confidence 44789999999998864
No 296
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.15 E-value=1.5e-06 Score=67.43 Aligned_cols=31 Identities=29% Similarity=0.592 Sum_probs=27.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISA 31 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~ 31 (343)
|+|.||||+||||+|+.+|+.+|.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 5799999999999999999999988775554
No 297
>KOG1051|consensus
Probab=98.08 E-value=1.6e-05 Score=79.98 Aligned_cols=100 Identities=23% Similarity=0.328 Sum_probs=67.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccc------cc---cccchHHHHHHHHHHHHHhcCCcEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTL------TS---KWYGEGEKMVRALFAVASVHQPSIIFIDEIDS 68 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l------~~---~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~ 68 (343)
++|.||.|+|||-+|+++|..+ .-.++.++++++ .+ .|.|..+ ...+....+..-.+|++|||||.
T Consensus 594 flflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIEk 671 (898)
T KOG1051|consen 594 FLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIEK 671 (898)
T ss_pred EEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchh--HHHHHHHHhcCCceEEEEechhh
Confidence 5899999999999999999988 457888988852 22 2344332 23455555666678999999996
Q ss_pred ccccCCCCchhHHHHHHHHHHHhhccCCCC-------CCCcEEEEEecCCCc
Q psy4538 69 LLCQRSDQENETSRRLKTEFLISLDGASTL-------DDDLVLVIGATNRPQ 113 (343)
Q Consensus 69 l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~v~vi~~tn~~~ 113 (343)
. ...+.+.++..++..... +-++++||.|+|.-.
T Consensus 672 A-----------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~ 712 (898)
T KOG1051|consen 672 A-----------HPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGS 712 (898)
T ss_pred c-----------CHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecccch
Confidence 5 234455555655544322 235688888887643
No 298
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=98.08 E-value=1.3e-05 Score=67.63 Aligned_cols=122 Identities=16% Similarity=0.114 Sum_probs=56.5
Q ss_pred EEeCCCCchHHHHHHHH-HHHc---CCcEEEEecccccccccch----HHH-------------HHHHHHHHHHhcCCcE
Q psy4538 2 LLFGPPGTGKTLIGKCV-AAQC---KATFFCISASTLTSKWYGE----GEK-------------MVRALFAVASVHQPSI 60 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~l-a~~l---~~~~~~v~~~~l~~~~~~~----~~~-------------~l~~~~~~~~~~~p~v 60 (343)
+++|.||+|||+.|-.. .... |.+++. |...+.-..... ... .............+++
T Consensus 4 ~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (193)
T PF05707_consen 4 LITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGSL 82 (193)
T ss_dssp EEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-E
T ss_pred EEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCcE
Confidence 68999999999977555 3332 555554 543222110000 000 0011112222225789
Q ss_pred EEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 61 IFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 61 l~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
++|||++.+++.+....... .. .+..+... .....-++.+|..+..++..++......+.+..+
T Consensus 83 iviDEa~~~~~~r~~~~~~~-~~----~~~~l~~h---Rh~g~diiliTQ~~~~id~~ir~lve~~~~~~k~ 146 (193)
T PF05707_consen 83 IVIDEAQNFFPSRSWKGKKV-PE----IIEFLAQH---RHYGWDIILITQSPSQIDKFIRDLVEYHYHCRKL 146 (193)
T ss_dssp EEETTGGGTSB---T-T-----H----HHHGGGGC---CCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE-
T ss_pred EEEECChhhcCCCccccccc-hH----HHHHHHHh---CcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEee
Confidence 99999999998876521111 11 22222222 1334567778999999999999877766666543
No 299
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.06 E-value=3.8e-05 Score=64.30 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=25.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISAS 32 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~ 32 (343)
++++||||||||+++..++.+. |.++++++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 4799999999999999886654 6667666653
No 300
>KOG2543|consensus
Probab=98.06 E-value=3.5e-05 Score=69.58 Aligned_cols=131 Identities=15% Similarity=0.146 Sum_probs=73.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccccc---------------ccchHH----HH---HHHHHHH--HHhc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSK---------------WYGEGE----KM---VRALFAV--ASVH 56 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~---------------~~~~~~----~~---l~~~~~~--~~~~ 56 (343)
+.|||.+|||||.+++.+.++++.+.+++++.+...- ..|... .. ....+.+ +..+
T Consensus 33 ~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~ 112 (438)
T KOG2543|consen 33 VHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATN 112 (438)
T ss_pred EEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhc
Confidence 4799999999999999999999999999998654311 111111 11 1112222 2212
Q ss_pred --CCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHH--hcc-ceEEEEcC
Q psy4538 57 --QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAAR--RRL-VKRLYIPL 131 (343)
Q Consensus 57 --~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~--~rf-~~~i~~~~ 131 (343)
+...|++|++|.+-. ...-++..++..-+-.. ...+.++.+.-..... -.. ..+ ..+++||.
T Consensus 113 ~d~~~~liLDnad~lrD--------~~a~ll~~l~~L~el~~---~~~i~iils~~~~e~~--y~~n~g~~~i~~l~fP~ 179 (438)
T KOG2543|consen 113 RDQKVFLILDNADALRD--------MDAILLQCLFRLYELLN---EPTIVIILSAPSCEKQ--YLINTGTLEIVVLHFPQ 179 (438)
T ss_pred cCceEEEEEcCHHhhhc--------cchHHHHHHHHHHHHhC---CCceEEEEeccccHHH--hhcccCCCCceEEecCC
Confidence 355788999998841 12233333433222221 1123333332211111 111 122 25789999
Q ss_pred CCHHHHHHHHHHH
Q psy4538 132 PDEQARCEIVTKL 144 (343)
Q Consensus 132 P~~~er~~il~~~ 144 (343)
|+.++..+|+.+-
T Consensus 180 Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 180 YSVEETQVILSRD 192 (438)
T ss_pred CCHHHHHHHHhcC
Confidence 9999999998754
No 301
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.05 E-value=0.00011 Score=76.69 Aligned_cols=156 Identities=19% Similarity=0.197 Sum_probs=85.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccccc---c------------cc---------------hHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSK---W------------YG---------------EGEKMVRALF 50 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~---~------------~~---------------~~~~~l~~~~ 50 (343)
++|+||+|.|||+++..++...+ ++.+++...-.+. + .+ .....+..++
T Consensus 35 ~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (903)
T PRK04841 35 VLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLF 113 (903)
T ss_pred EEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHH
Confidence 47999999999999999988776 6666654321100 0 00 0011122233
Q ss_pred HHHH-hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhH-HHHhccceEEE
Q psy4538 51 AVAS-VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDE-AARRRLVKRLY 128 (343)
Q Consensus 51 ~~~~-~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~-~l~~rf~~~i~ 128 (343)
.... ...|.+|+|||++.+.. ......+..++... +....+|| +++....++- .++- -...++
T Consensus 114 ~~l~~~~~~~~lvlDD~h~~~~-------~~~~~~l~~l~~~~------~~~~~lv~-~sR~~~~~~~~~l~~-~~~~~~ 178 (903)
T PRK04841 114 IELADWHQPLYLVIDDYHLITN-------PEIHEAMRFFLRHQ------PENLTLVV-LSRNLPPLGIANLRV-RDQLLE 178 (903)
T ss_pred HHHhcCCCCEEEEEeCcCcCCC-------hHHHHHHHHHHHhC------CCCeEEEE-EeCCCCCCchHhHHh-cCccee
Confidence 3322 25688999999997721 12223344444322 12233444 4543222221 1111 112344
Q ss_pred Ec----CCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHH
Q psy4538 129 IP----LPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLC 176 (343)
Q Consensus 129 ~~----~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~ 176 (343)
+. .-+.+|-.+++...+. ..++++.+..+.+.|.|... -+.-+.
T Consensus 179 l~~~~l~f~~~e~~~ll~~~~~---~~~~~~~~~~l~~~t~Gwp~-~l~l~~ 226 (903)
T PRK04841 179 IGSQQLAFDHQEAQQFFDQRLS---SPIEAAESSRLCDDVEGWAT-ALQLIA 226 (903)
T ss_pred cCHHhCCCCHHHHHHHHHhccC---CCCCHHHHHHHHHHhCChHH-HHHHHH
Confidence 44 5688888888765543 45678889999999998643 344333
No 302
>PHA02624 large T antigen; Provisional
Probab=98.00 E-value=1.6e-05 Score=76.59 Aligned_cols=118 Identities=14% Similarity=0.188 Sum_probs=64.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
++|+||||||||+++.++++.++...+.++++.-.+. |...-.....+.+||++-.-.-...+-..+.
T Consensus 434 il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~G~ 501 (647)
T PHA02624 434 WLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNKDLPSGQ 501 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeeccccccccccCCccc
Confidence 5899999999999999999999767777775443221 2222223345788888743221100000000
Q ss_pred HHHHHHHHHHhhccC--------CCCC--CCcEEEEEecCCCchhhHHHHhccceEEEEcC
Q psy4538 81 SRRLKTEFLISLDGA--------STLD--DDLVLVIGATNRPQELDEAARRRLVKRLYIPL 131 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~--------~~~~--~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~ 131 (343)
...-+..+-+.+++. +..+ ..--..|.|+|. ..++..+.-||...+.|..
T Consensus 502 ~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 502 GMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred ccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 000012233444443 1100 000123445654 6788888889998887754
No 303
>KOG1051|consensus
Probab=97.97 E-value=5.8e-05 Score=76.06 Aligned_cols=136 Identities=25% Similarity=0.311 Sum_probs=93.0
Q ss_pred EEeCCCCchHHHHHHHHHHHc----------CCcEEEEeccccc--ccccchHHHHHHHHHHHHH-hcCCcEEEeccccc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC----------KATFFCISASTLT--SKWYGEGEKMVRALFAVAS-VHQPSIIFIDEIDS 68 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l----------~~~~~~v~~~~l~--~~~~~~~~~~l~~~~~~~~-~~~p~vl~iDeid~ 68 (343)
+|.|.||+|||.++.-+++.. +..++.++...+. .++-|+.+..++.+..++. ...+.||+|||++-
T Consensus 212 vLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~ 291 (898)
T KOG1051|consen 212 VLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHW 291 (898)
T ss_pred eEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceee
Confidence 689999999999999999976 3456666665443 4456788889999988876 44567899999999
Q ss_pred ccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCC-----chhhHHHHhccceEEEEcCCCHHHHHHHHHH
Q psy4538 69 LLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRP-----QELDEAARRRLVKRLYIPLPDEQARCEIVTK 143 (343)
Q Consensus 69 l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~-----~~l~~~l~~rf~~~i~~~~P~~~er~~il~~ 143 (343)
+........ .....+.+-..+ . .+.+.+||+|..- ..-+|++-+||. .+.++.|+.+....++..
T Consensus 292 lvg~g~~~~---~~d~~nlLkp~L-~-----rg~l~~IGatT~e~Y~k~iekdPalErrw~-l~~v~~pS~~~~~~iL~~ 361 (898)
T KOG1051|consen 292 LVGSGSNYG---AIDAANLLKPLL-A-----RGGLWCIGATTLETYRKCIEKDPALERRWQ-LVLVPIPSVENLSLILPG 361 (898)
T ss_pred eecCCCcch---HHHHHHhhHHHH-h-----cCCeEEEecccHHHHHHHHhhCcchhhCcc-eeEeccCcccchhhhhhh
Confidence 987655411 222222222111 1 2338899987532 244788888998 677888988776666665
Q ss_pred HHhh
Q psy4538 144 LLRN 147 (343)
Q Consensus 144 ~l~~ 147 (343)
.-..
T Consensus 362 l~~~ 365 (898)
T KOG1051|consen 362 LSER 365 (898)
T ss_pred hhhh
Confidence 5444
No 304
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.96 E-value=1.1e-05 Score=69.02 Aligned_cols=20 Identities=45% Similarity=0.738 Sum_probs=18.1
Q ss_pred CEEeCCCCchHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAA 20 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~ 20 (343)
+||||+||+|||++|+.++.
T Consensus 15 ~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 15 YLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred EEEECCCCCCHHHHHHhcCC
Confidence 58999999999999999963
No 305
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.94 E-value=6.5e-05 Score=72.17 Aligned_cols=172 Identities=18% Similarity=0.244 Sum_probs=102.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc--CCcEEEEecccccccc-----cchHHHHHHHHHHHH-----HhcCCcEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC--KATFFCISASTLTSKW-----YGEGEKMVRALFAVA-----SVHQPSIIFIDEIDS 68 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l--~~~~~~v~~~~l~~~~-----~~~~~~~l~~~~~~~-----~~~~p~vl~iDeid~ 68 (343)
+|+.|.+||||-.+++++-... ..+|+.+||..+.... .|+........+.+. .......||+|||..
T Consensus 339 vll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeIgd 418 (606)
T COG3284 339 VLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEIGD 418 (606)
T ss_pred eEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHhhh
Confidence 5899999999999999996654 5689999997664321 111111111111111 112356899999997
Q ss_pred ccccCCCCchhHHHHHHHHHHHhhccCCCC------CCCcEEEEEecCCCc-------hhhHHHHhccceEEEEcCCCHH
Q psy4538 69 LLCQRSDQENETSRRLKTEFLISLDGASTL------DDDLVLVIGATNRPQ-------ELDEAARRRLVKRLYIPLPDEQ 135 (343)
Q Consensus 69 l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~------~~~~v~vi~~tn~~~-------~l~~~l~~rf~~~i~~~~P~~~ 135 (343)
+. -.++..|+.-+...... ..-.|-||++|+..- ...+.+.-|.. .+.+..|...
T Consensus 419 ~p-----------~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyrL~-~~~i~lP~lr 486 (606)
T COG3284 419 MP-----------LALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYRLN-AFVITLPPLR 486 (606)
T ss_pred ch-----------HHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHHHhc-CeeeccCchh
Confidence 72 34455566655533221 133467888886621 11222222333 3344555554
Q ss_pred HH---HHHHHHHHhhh---CCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccc
Q psy4538 136 AR---CEIVTKLLRNI---TNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPV 184 (343)
Q Consensus 136 er---~~il~~~l~~~---~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~ 184 (343)
+| ..++.+++.+. +..++++....|..+-.--+-+++.++++.++..+-
T Consensus 487 ~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~ 541 (606)
T COG3284 487 ERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSD 541 (606)
T ss_pred cccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC
Confidence 44 44555555443 345678788887776665689999999999876554
No 306
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.93 E-value=7.7e-06 Score=83.34 Aligned_cols=69 Identities=20% Similarity=0.246 Sum_probs=49.0
Q ss_pred ceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcC-----CCC------CCCCcEEEEeecCCcccccHHHHHhhhceE
Q psy4538 226 SIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDG-----AST------LDDDLVLVIGATNRPQELDEAARRRLVKRL 294 (343)
Q Consensus 226 ~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg-----~~~------~~~~~v~vi~aTN~~~~lD~allRR~d~~i 294 (343)
.|+||||||.+.+...+ + ..+.||..||. +.. .+-+.|++|+|||.++.||++|++||+ .|
T Consensus 416 ~villDEidk~~~~~~~--~-----~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~-vi 487 (775)
T TIGR00763 416 PLFLLDEIDKIGSSFRG--D-----PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRME-VI 487 (775)
T ss_pred CEEEEechhhcCCccCC--C-----HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCee-EE
Confidence 48999999999864321 1 24566666653 110 111348999999999999999999996 67
Q ss_pred eccCCCCC
Q psy4538 295 YIPLPDEQ 302 (343)
Q Consensus 295 ~~~~P~~~ 302 (343)
.|+.|+.+
T Consensus 488 ~~~~~~~~ 495 (775)
T TIGR00763 488 ELSGYTEE 495 (775)
T ss_pred ecCCCCHH
Confidence 88877753
No 307
>KOG0480|consensus
Probab=97.93 E-value=1.6e-05 Score=75.94 Aligned_cols=160 Identities=17% Similarity=0.184 Sum_probs=90.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEec-----ccccccccchHHHHHHHHHHH-H-HhcCCcEEEecccccccccC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISA-----STLTSKWYGEGEKMVRALFAV-A-SVHQPSIIFIDEIDSLLCQR 73 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~-----~~l~~~~~~~~~~~l~~~~~~-~-~~~~p~vl~iDeid~l~~~~ 73 (343)
|++.|.||+|||-+.++++.-+...+| ++. +.+....+...+.. .-.++. | .....+|.+|||+|++-.+.
T Consensus 381 v~iVGDPgt~KSQfLk~v~~fsPR~vY-tsGkaSSaAGLTaaVvkD~esg-df~iEAGALmLADnGICCIDEFDKMd~~d 458 (764)
T KOG0480|consen 381 VCIVGDPGTGKSQFLKAVCAFSPRSVY-TSGKASSAAGLTAAVVKDEESG-DFTIEAGALMLADNGICCIDEFDKMDVKD 458 (764)
T ss_pred EEEeCCCCccHHHHHHHHhccCCcceE-ecCcccccccceEEEEecCCCC-ceeeecCcEEEccCceEEechhcccChHh
Confidence 689999999999999999988765443 221 11111100000000 000010 0 11346799999999984221
Q ss_pred CCCchhHHHHHHHHHHHhhcc---------CCCCCCCcEEEEEecCCCc-------------hhhHHHHhccceE-EEEc
Q psy4538 74 SDQENETSRRLKTEFLISLDG---------ASTLDDDLVLVIGATNRPQ-------------ELDEAARRRLVKR-LYIP 130 (343)
Q Consensus 74 ~~~~~~~~~~~~~~ll~~l~~---------~~~~~~~~v~vi~~tn~~~-------------~l~~~l~~rf~~~-i~~~ 130 (343)
...+...|+. ..-.-+-+..|++++|+.. .+..++.+||+.. |-++
T Consensus 459 -----------qvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD 527 (764)
T KOG0480|consen 459 -----------QVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLD 527 (764)
T ss_pred -----------HHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEec
Confidence 1122222321 1111123445677777754 5678899999954 5779
Q ss_pred CCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHH
Q psy4538 131 LPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREA 179 (343)
Q Consensus 131 ~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a 179 (343)
.|++..-+.|-++.+.... .+++ .......|+..+++..++.|
T Consensus 528 ~~nE~~D~~ia~hIld~h~-~i~~-----~~~~~~~~~~e~vrkYi~yA 570 (764)
T KOG0480|consen 528 DCNEVVDYAIARHILDLHR-GIDD-----ATERVCVYTLEQVRKYIRYA 570 (764)
T ss_pred CCchHHHHHHHHHHHHHhc-cccc-----cccccccccHHHHHHHHHHH
Confidence 9999998888888876532 2221 11112446666666666555
No 308
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.93 E-value=1.1e-05 Score=84.17 Aligned_cols=144 Identities=20% Similarity=0.174 Sum_probs=82.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccc------c-cccch--HHHHHHHHHHHHHhcCCcEEEecccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLT------S-KWYGE--GEKMVRALFAVASVHQPSIIFIDEIDSLLC 71 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~------~-~~~~~--~~~~l~~~~~~~~~~~p~vl~iDeid~l~~ 71 (343)
+||-|.||+|||+++.++|++.|..++.+|.++-. + ..+++ ++-..+..--......+..+++||+.....
T Consensus 1546 ilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNLaSQ 1625 (4600)
T COG5271 1546 ILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINLASQ 1625 (4600)
T ss_pred eeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhhhHH
Confidence 58999999999999999999999999999876532 2 11222 111111111122235677999999974311
Q ss_pred cCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCC------chhhHHHHhccceEEEEcCCCHHHHHHHHHHHH
Q psy4538 72 QRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRP------QELDEAARRRLVKRLYIPLPDEQARCEIVTKLL 145 (343)
Q Consensus 72 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~------~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l 145 (343)
..-++.+......-..++-+++.... ......|.++-|+. ..++.++..||. ++++...+.+....|.....
T Consensus 1626 SVlEGLNacLDhR~eayIPEld~~f~-~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFs-vV~~d~lt~dDi~~Ia~~~y 1703 (4600)
T COG5271 1626 SVLEGLNACLDHRREAYIPELDKTFD-VHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFS-VVKMDGLTTDDITHIANKMY 1703 (4600)
T ss_pred HHHHHHHHHHhhccccccccccceee-ccCCeeeeeecCchhcCCCcccCCHHHhhhhh-eEEecccccchHHHHHHhhC
Confidence 10011111111111111111211111 12345566666553 368999999998 78888887777777766554
Q ss_pred h
Q psy4538 146 R 146 (343)
Q Consensus 146 ~ 146 (343)
.
T Consensus 1704 p 1704 (4600)
T COG5271 1704 P 1704 (4600)
T ss_pred C
Confidence 3
No 309
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.92 E-value=3.6e-05 Score=71.03 Aligned_cols=97 Identities=14% Similarity=0.224 Sum_probs=52.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC-cEEEEecccccccccch------HHHHHHHHHHHHHhcCCcEEEecccccccccC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA-TFFCISASTLTSKWYGE------GEKMVRALFAVASVHQPSIIFIDEIDSLLCQR 73 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~-~~~~v~~~~l~~~~~~~------~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~ 73 (343)
++||||+|+|||+|.-.+.+.+.. .-..+.-..+....... ....+..+.+... ....+|++||++--
T Consensus 65 lYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~-~~~~lLcfDEF~V~---- 139 (362)
T PF03969_consen 65 LYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELA-KESRLLCFDEFQVT---- 139 (362)
T ss_pred EEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHH-hcCCEEEEeeeecc----
Confidence 589999999999999999998854 11111111221110000 0011222222222 33459999999843
Q ss_pred CCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCC
Q psy4538 74 SDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRP 112 (343)
Q Consensus 74 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~ 112 (343)
+-...-++..|+..+- ...+++|+|+|.+
T Consensus 140 ----DiaDAmil~rLf~~l~------~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 140 ----DIADAMILKRLFEALF------KRGVVLVATSNRP 168 (362)
T ss_pred ----chhHHHHHHHHHHHHH------HCCCEEEecCCCC
Confidence 1223344455555442 3457889999874
No 310
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.91 E-value=7.7e-05 Score=71.10 Aligned_cols=72 Identities=26% Similarity=0.421 Sum_probs=48.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccccccccc------ch--------HHHHHHHHHHHHHhcCCcEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWY------GE--------GEKMVRALFAVASVHQPSIIFI 63 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~------~~--------~~~~l~~~~~~~~~~~p~vl~i 63 (343)
++|+|+||+|||+++..++... +.++++++..+...... +. .+..+..++.......|.+++|
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~lVVI 162 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPDLVVI 162 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCCEEEE
Confidence 4799999999999999998765 56778887654332110 00 0112344455555567999999
Q ss_pred ccccccccc
Q psy4538 64 DEIDSLLCQ 72 (343)
Q Consensus 64 Deid~l~~~ 72 (343)
|.+..+...
T Consensus 163 DSIq~l~~~ 171 (446)
T PRK11823 163 DSIQTMYSP 171 (446)
T ss_pred echhhhccc
Confidence 999988653
No 311
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.91 E-value=7.5e-05 Score=67.54 Aligned_cols=72 Identities=22% Similarity=0.302 Sum_probs=47.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccc----------------cccchHHHHHHHHHHHHHhcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTS----------------KWYGEGEKMVRALFAVASVHQPSII 61 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~----------------~~~~~~~~~l~~~~~~~~~~~p~vl 61 (343)
++++||||||||+|+..++.+. |.++++++...... ..+...++.+..+....+...+.++
T Consensus 58 teI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~lI 137 (321)
T TIGR02012 58 IEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDII 137 (321)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCcEE
Confidence 4699999999999988876544 56677776543221 1111233334444344455678999
Q ss_pred Eeccccccccc
Q psy4538 62 FIDEIDSLLCQ 72 (343)
Q Consensus 62 ~iDeid~l~~~ 72 (343)
+||-+-.+.+.
T Consensus 138 VIDSv~al~~~ 148 (321)
T TIGR02012 138 VVDSVAALVPK 148 (321)
T ss_pred EEcchhhhccc
Confidence 99999988754
No 312
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.91 E-value=6.7e-06 Score=75.33 Aligned_cols=133 Identities=24% Similarity=0.275 Sum_probs=68.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccc-----ccccccc---hHHHHHH-HHHHHHHhcCCcEEEecccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISAST-----LTSKWYG---EGEKMVR-ALFAVASVHQPSIIFIDEIDSLLC 71 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~-----l~~~~~~---~~~~~l~-~~~~~~~~~~p~vl~iDeid~l~~ 71 (343)
|||.|.||+|||.+.+.+++..... ++++... +...... .++..+. ..+ .....+|++|||+|.+-.
T Consensus 60 iLlvGdpg~gKS~ll~~~~~~~pr~-v~~~g~~~s~~gLta~~~~d~~~~~~~leaGal---vlad~GiccIDe~dk~~~ 135 (331)
T PF00493_consen 60 ILLVGDPGTGKSQLLKYVAKLAPRS-VYTSGKGSSAAGLTASVSRDPVTGEWVLEAGAL---VLADGGICCIDEFDKMKE 135 (331)
T ss_dssp EEEECSCHHCHHHHHHCCCCT-SSE-EEEECCGSTCCCCCEEECCCGGTSSECEEE-HH---HHCTTSEEEECTTTT--C
T ss_pred eeeccchhhhHHHHHHHHHhhCCce-EEECCCCcccCCccceeccccccceeEEeCCch---hcccCceeeecccccccc
Confidence 5899999999999999887665433 3333222 1111000 0000000 011 123568999999998732
Q ss_pred cCCCCchhHHHHHHHHHHHhhccCC---------CCCCCcEEEEEecCCCc-------------hhhHHHHhccceEEE-
Q psy4538 72 QRSDQENETSRRLKTEFLISLDGAS---------TLDDDLVLVIGATNRPQ-------------ELDEAARRRLVKRLY- 128 (343)
Q Consensus 72 ~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~v~vi~~tn~~~-------------~l~~~l~~rf~~~i~- 128 (343)
.....++..|+.-. ..-+.+..|++++|+.. .+++.+.+||+..+.
T Consensus 136 -----------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l 204 (331)
T PF00493_consen 136 -----------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLL 204 (331)
T ss_dssp -----------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC
T ss_pred -----------hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEe
Confidence 11233444444211 11133567888888765 467789999996654
Q ss_pred EcCCCHHHHHHHHHHHHhhh
Q psy4538 129 IPLPDEQARCEIVTKLLRNI 148 (343)
Q Consensus 129 ~~~P~~~er~~il~~~l~~~ 148 (343)
...|+.+.-..+.++.+...
T Consensus 205 ~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 205 RDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp --TTT-HHHHHHHHHHHTTT
T ss_pred ccccccccccccceEEEecc
Confidence 47788777777777776553
No 313
>PF14516 AAA_35: AAA-like domain
Probab=97.90 E-value=0.00039 Score=63.79 Aligned_cols=167 Identities=16% Similarity=0.166 Sum_probs=92.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccch-------------------------------HHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGE-------------------------------GEKMV 46 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~-------------------------------~~~~l 46 (343)
+.+.||..+|||++...+.+.+ |...+.+++..+....... .....
T Consensus 34 ~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~ 113 (331)
T PF14516_consen 34 IRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISC 113 (331)
T ss_pred EEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhH
Confidence 3689999999999999987665 6777888876543211100 01112
Q ss_pred HHHHHHH---HhcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCC-CC-CCcE--EEEEecCCCchhhHHH
Q psy4538 47 RALFAVA---SVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAST-LD-DDLV--LVIGATNRPQELDEAA 119 (343)
Q Consensus 47 ~~~~~~~---~~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~-~~~v--~vi~~tn~~~~l~~~l 119 (343)
...|... ....|-||+|||+|.++.... ...... .+++.+..... .+ -.++ +++++|.. . +....
T Consensus 114 ~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~-----~~~dF~-~~LR~~~~~~~~~~~~~~L~li~~~~t~~-~-~~~~~ 185 (331)
T PF14516_consen 114 TEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ-----IADDFF-GLLRSWYEQRKNNPIWQKLRLILAGSTED-Y-IILDI 185 (331)
T ss_pred HHHHHHHHHhcCCCCEEEEEechhhhccCcc-----hHHHHH-HHHHHHHHhcccCcccceEEEEEecCccc-c-cccCC
Confidence 2233321 224688999999999975321 111222 12222222111 11 1222 33333221 1 11111
Q ss_pred -Hh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHh
Q psy4538 120 -RR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREAS 180 (343)
Q Consensus 120 -~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~ 180 (343)
.+ .....+.++.-+.+|...+++.+ +...+...++.+-..+.|. |.=+..+|....
T Consensus 186 ~~SPFNIg~~i~L~~Ft~~ev~~L~~~~----~~~~~~~~~~~l~~~tgGh-P~Lv~~~~~~l~ 244 (331)
T PF14516_consen 186 NQSPFNIGQPIELPDFTPEEVQELAQRY----GLEFSQEQLEQLMDWTGGH-PYLVQKACYLLV 244 (331)
T ss_pred CCCCcccccceeCCCCCHHHHHHHHHhh----hccCCHHHHHHHHHHHCCC-HHHHHHHHHHHH
Confidence 12 23356778888888887776654 3456666799999999884 555666666553
No 314
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.89 E-value=9.4e-05 Score=68.63 Aligned_cols=72 Identities=25% Similarity=0.387 Sum_probs=48.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccccccccc------c--------hHHHHHHHHHHHHHhcCCcEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWY------G--------EGEKMVRALFAVASVHQPSIIFI 63 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~------~--------~~~~~l~~~~~~~~~~~p~vl~i 63 (343)
++|+|+||+|||+++..+|..+ +.++++++..+-..... + ..+..+..+.......+|.+|+|
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~lVVI 164 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPDLVII 164 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCcEEEE
Confidence 4799999999999999998765 35677776643221100 0 01122344555555568999999
Q ss_pred ccccccccc
Q psy4538 64 DEIDSLLCQ 72 (343)
Q Consensus 64 Deid~l~~~ 72 (343)
|.+..+...
T Consensus 165 DSIq~l~~~ 173 (372)
T cd01121 165 DSIQTVYSS 173 (372)
T ss_pred cchHHhhcc
Confidence 999988643
No 315
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.87 E-value=8.8e-05 Score=59.68 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=20.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+++.||+|||||++.|.+|...
T Consensus 32 iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 32 IAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred EEEeCCCCccHHHHHHHHHhcc
Confidence 4789999999999999999876
No 316
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.87 E-value=0.00017 Score=77.10 Aligned_cols=149 Identities=15% Similarity=0.188 Sum_probs=75.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcE---EEEecccc---ccccc-------c----hHHHHHHH-------------HH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATF---FCISASTL---TSKWY-------G----EGEKMVRA-------------LF 50 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~---~~v~~~~l---~~~~~-------~----~~~~~l~~-------------~~ 50 (343)
+-|+|++|+||||+|+++++.+...| +.++.... ...+. . .....+.. ..
T Consensus 210 vgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~ 289 (1153)
T PLN03210 210 VGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAM 289 (1153)
T ss_pred EEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHH
Confidence 35899999999999999988874332 11111000 00000 0 00000111 11
Q ss_pred HHHHhcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEc
Q psy4538 51 AVASVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIP 130 (343)
Q Consensus 51 ~~~~~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~ 130 (343)
+.....++.+|+||+++.. .....+....+... .+ ..||.||+....+.. ...+..++++
T Consensus 290 ~~~L~~krvLLVLDdv~~~-------------~~l~~L~~~~~~~~--~G--srIIiTTrd~~vl~~---~~~~~~~~v~ 349 (1153)
T PLN03210 290 EERLKHRKVLIFIDDLDDQ-------------DVLDALAGQTQWFG--SG--SRIIVITKDKHFLRA---HGIDHIYEVC 349 (1153)
T ss_pred HHHHhCCeEEEEEeCCCCH-------------HHHHHHHhhCccCC--CC--cEEEEEeCcHHHHHh---cCCCeEEEec
Confidence 1122245678999998742 11222222222111 12 234446665332211 1345678999
Q ss_pred CCCHHHHHHHHHHHHhhhCCCCC--hhhHHHHHHHCCCCCH
Q psy4538 131 LPDEQARCEIVTKLLRNITNSLT--VDDIEEVGRMTTDFSG 169 (343)
Q Consensus 131 ~P~~~er~~il~~~l~~~~~~~~--~~~~~~la~~t~g~s~ 169 (343)
.|+.++..+++..++.+...... .+....+++.+.|+..
T Consensus 350 ~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPL 390 (1153)
T PLN03210 350 LPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPL 390 (1153)
T ss_pred CCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcH
Confidence 99999999999877644321111 1123456677776543
No 317
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.87 E-value=0.00011 Score=60.59 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=44.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHH--------------------HHHHHHHHHhcCCcE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKM--------------------VRALFAVASVHQPSI 60 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~--------------------l~~~~~~~~~~~p~v 60 (343)
+++.|+||+|||++|..++..++.+++++........ +..+. +..++... ..++.+
T Consensus 4 ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~ 79 (170)
T PRK05800 4 ILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRC 79 (170)
T ss_pred EEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCE
Confidence 5799999999999999999998877776665443211 11111 22222221 234668
Q ss_pred EEecccccccc
Q psy4538 61 IFIDEIDSLLC 71 (343)
Q Consensus 61 l~iDeid~l~~ 71 (343)
++||.+..+..
T Consensus 80 VlID~Lt~~~~ 90 (170)
T PRK05800 80 VLVDCLTTWVT 90 (170)
T ss_pred EEehhHHHHHH
Confidence 99999988754
No 318
>PRK04296 thymidine kinase; Provisional
Probab=97.87 E-value=0.00028 Score=59.37 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=23.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCIS 30 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~ 30 (343)
.+++||+|+|||+++..++..+ +..++.+.
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3789999999999998888765 55555554
No 319
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.86 E-value=9.1e-05 Score=67.06 Aligned_cols=72 Identities=21% Similarity=0.307 Sum_probs=47.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccc----------------cccchHHHHHHHHHHHHHhcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTS----------------KWYGEGEKMVRALFAVASVHQPSII 61 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~----------------~~~~~~~~~l~~~~~~~~~~~p~vl 61 (343)
+.++||||+|||+++..++.+. |...++++...-.. ..+...++.+..+....+...+.++
T Consensus 58 teI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~lI 137 (325)
T cd00983 58 IEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVDLI 137 (325)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCCEE
Confidence 3689999999999999987544 66777777643211 1111223333333333445678999
Q ss_pred Eeccccccccc
Q psy4538 62 FIDEIDSLLCQ 72 (343)
Q Consensus 62 ~iDeid~l~~~ 72 (343)
+||-+-.+.+.
T Consensus 138 VIDSvaal~~~ 148 (325)
T cd00983 138 VVDSVAALVPK 148 (325)
T ss_pred EEcchHhhccc
Confidence 99999988753
No 320
>KOG2170|consensus
Probab=97.85 E-value=0.0003 Score=61.83 Aligned_cols=68 Identities=21% Similarity=0.304 Sum_probs=41.3
Q ss_pred EeCCCCchHHHHHHHHHHHcCC-----cEEE--Eeccccccc--ccchHHHHHHHHHHHHHhcCCcEEEeccccccc
Q psy4538 3 LFGPPGTGKTLIGKCVAAQCKA-----TFFC--ISASTLTSK--WYGEGEKMVRALFAVASVHQPSIIFIDEIDSLL 70 (343)
Q Consensus 3 l~Gp~GtGKT~la~~la~~l~~-----~~~~--v~~~~l~~~--~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~ 70 (343)
|+|++||||.+.++.+|+.+-. +++. +....+... .....++....+......++.+++++||+|+|-
T Consensus 115 fHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 115 FHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred ecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcC
Confidence 8999999999999999997721 2111 111111111 011122333344445556778899999999883
No 321
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.84 E-value=3.7e-05 Score=61.34 Aligned_cols=32 Identities=41% Similarity=0.715 Sum_probs=25.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTL 34 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l 34 (343)
|+++||||+||||+++.++..++. ..++...+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~--~~i~~D~~ 33 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGA--VVISQDEI 33 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTE--EEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC--EEEeHHHH
Confidence 579999999999999999999984 44554443
No 322
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.82 E-value=9.7e-05 Score=68.54 Aligned_cols=58 Identities=22% Similarity=0.312 Sum_probs=36.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----CCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEeccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----KATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLL 70 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~ 70 (343)
+++.||+|||||+++.+++... | ..++...+.... .. ..+. ......+|+|||+..+.
T Consensus 212 li~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L----~~---~~lg--~v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 212 LIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNI----ST---RQIG--LVGRWDVVAFDEVATLK 273 (449)
T ss_pred EEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHH----HH---HHHh--hhccCCEEEEEcCCCCc
Confidence 5789999999999999987762 3 223333332221 11 1111 23457899999999864
No 323
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.79 E-value=2.4e-05 Score=71.77 Aligned_cols=70 Identities=21% Similarity=0.219 Sum_probs=48.6
Q ss_pred cCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCC-----C---------CCCcEEEEeecCCcccccHHHHH
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAST-----L---------DDDLVLVIGATNRPQELDEAARR 288 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~-----~---------~~~~v~vi~aTN~~~~lD~allR 288 (343)
..++||||||||.+.... -..|...|+...- . .-..+.+|+|||++..+++++.+
T Consensus 101 ~~~~vl~IDEi~~l~~~~-----------~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 101 EEGDVLFIDEIHRLSPVV-----------EEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred ccCCEEEEecHhhcchHH-----------HHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH
Confidence 357899999999885321 1223444543210 0 00126889999999999999877
Q ss_pred hhhceEeccCCCCCC
Q psy4538 289 RLVKRLYIPLPDEQK 303 (343)
Q Consensus 289 R~d~~i~~~~P~~~~ 303 (343)
||...+.+++|+.++
T Consensus 170 Rf~~~~~l~~~~~~e 184 (328)
T PRK00080 170 RFGIVQRLEFYTVEE 184 (328)
T ss_pred hcCeeeecCCCCHHH
Confidence 999999999988753
No 324
>PRK03839 putative kinase; Provisional
Probab=97.78 E-value=1.8e-05 Score=66.03 Aligned_cols=30 Identities=30% Similarity=0.530 Sum_probs=26.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCIS 30 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~ 30 (343)
|+|.|+||+||||+++.+|+.++.+++.++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 578999999999999999999999886544
No 325
>KOG3347|consensus
Probab=97.78 E-value=1.7e-05 Score=62.18 Aligned_cols=30 Identities=37% Similarity=0.616 Sum_probs=27.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCIS 30 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~ 30 (343)
||++|.||||||+++..+|...|.+++.++
T Consensus 10 ILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 10 ILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred EEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 689999999999999999999999887554
No 326
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.78 E-value=9.3e-05 Score=64.06 Aligned_cols=32 Identities=31% Similarity=0.557 Sum_probs=27.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISAS 32 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~ 32 (343)
++++|+||+|||+++..+|.+. +.++++++..
T Consensus 26 ~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 26 TQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3799999999999999998744 6778888876
No 327
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.76 E-value=0.0001 Score=61.22 Aligned_cols=23 Identities=43% Similarity=0.684 Sum_probs=21.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
|+|.|+||+|||++++.+|+++.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 57999999999999999999984
No 328
>PRK13695 putative NTPase; Provisional
Probab=97.76 E-value=0.001 Score=55.06 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=19.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
++|.|++|+|||++++.++..+
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999987765
No 329
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.76 E-value=4.9e-05 Score=64.46 Aligned_cols=67 Identities=18% Similarity=0.319 Sum_probs=40.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC----cEEEEe-cccccc---------cccchHHHHHHHHHHHHHhcCCcEEEeccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA----TFFCIS-ASTLTS---------KWYGEGEKMVRALFAVASVHQPSIIFIDEI 66 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~----~~~~v~-~~~l~~---------~~~~~~~~~l~~~~~~~~~~~p~vl~iDei 66 (343)
+++.||+|+||||++++++..+.. .++.+. ..++.. ...+.....+...+..+....|.++++||+
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gEi 83 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGEM 83 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcCC
Confidence 589999999999999999887742 222221 111110 001111223444555556678999999998
Q ss_pred c
Q psy4538 67 D 67 (343)
Q Consensus 67 d 67 (343)
-
T Consensus 84 r 84 (198)
T cd01131 84 R 84 (198)
T ss_pred C
Confidence 4
No 330
>PRK00625 shikimate kinase; Provisional
Probab=97.75 E-value=2.3e-05 Score=64.76 Aligned_cols=30 Identities=40% Similarity=0.566 Sum_probs=27.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCIS 30 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~ 30 (343)
|+|+|.||+|||++++.+|+.++.+++.++
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 579999999999999999999999988665
No 331
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.75 E-value=2.3e-05 Score=64.82 Aligned_cols=29 Identities=34% Similarity=0.517 Sum_probs=26.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI 29 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v 29 (343)
|+|+|+||||||++++.+|+.+|.+++..
T Consensus 7 i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 7 IVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 57999999999999999999999888744
No 332
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.71 E-value=3e-05 Score=62.72 Aligned_cols=30 Identities=33% Similarity=0.543 Sum_probs=26.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCIS 30 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~ 30 (343)
|+|+|+||+|||++++.+++.+|.+++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 589999999999999999999999887544
No 333
>PRK13947 shikimate kinase; Provisional
Probab=97.71 E-value=2.9e-05 Score=64.07 Aligned_cols=30 Identities=43% Similarity=0.537 Sum_probs=27.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCIS 30 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~ 30 (343)
|+|.|+||||||++++.+|+.+|.+++..+
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 578999999999999999999999987554
No 334
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.71 E-value=3e-05 Score=64.80 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=27.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLT 35 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~ 35 (343)
|+++||||+||||+++.+|+.+|... ++..++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHH
Confidence 57899999999999999999998654 5555544
No 335
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.70 E-value=0.0001 Score=60.62 Aligned_cols=22 Identities=45% Similarity=0.721 Sum_probs=19.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
++|+|+||+||||+++.+++++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 5899999999999999999988
No 336
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.69 E-value=3e-05 Score=61.77 Aligned_cols=27 Identities=30% Similarity=0.504 Sum_probs=24.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~ 27 (343)
|-+.|||||||||+++.+|+.+|.+++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~v 29 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLV 29 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCcee
Confidence 357899999999999999999999986
No 337
>PRK06217 hypothetical protein; Validated
Probab=97.69 E-value=3.4e-05 Score=64.55 Aligned_cols=30 Identities=23% Similarity=0.424 Sum_probs=27.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCIS 30 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~ 30 (343)
|+|.|++|+||||+++.+++.+|.+++..+
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 579999999999999999999999876554
No 338
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.69 E-value=4.6e-05 Score=69.20 Aligned_cols=68 Identities=24% Similarity=0.278 Sum_probs=48.6
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCC--------------CCCCcEEEEeecCCcccccHHHHHh
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAST--------------LDDDLVLVIGATNRPQELDEAARRR 289 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~--------------~~~~~v~vi~aTN~~~~lD~allRR 289 (343)
.+.|||+||++.+.+.. ...|+..|++... ..-..+++|++||++..+++++..|
T Consensus 81 ~~~vl~iDEi~~l~~~~-----------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 81 EGDVLFIDEIHRLSPAV-----------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred cCCEEEEehHhhhCHHH-----------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhh
Confidence 57899999999886431 2234445543321 0011278999999999999998889
Q ss_pred hhceEeccCCCCC
Q psy4538 290 LVKRLYIPLPDEQ 302 (343)
Q Consensus 290 ~d~~i~~~~P~~~ 302 (343)
|...+.++.|+.+
T Consensus 150 ~~~~~~l~~l~~~ 162 (305)
T TIGR00635 150 FGIILRLEFYTVE 162 (305)
T ss_pred cceEEEeCCCCHH
Confidence 9999999988864
No 339
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.67 E-value=0.00061 Score=56.08 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=44.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccc-----------------cchHHHHHHHHHHHHHhcCCcEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKW-----------------YGEGEKMVRALFAVASVHQPSIIFI 63 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~-----------------~~~~~~~l~~~~~~~~~~~p~vl~i 63 (343)
+|++|++|+|||++|..++...+.+.+++....-...- ..+....+...+... ..+.+++|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 48999999999999999998877777777654332110 011112223333221 14679999
Q ss_pred ccccccccc
Q psy4538 64 DEIDSLLCQ 72 (343)
Q Consensus 64 Deid~l~~~ 72 (343)
|.+..+...
T Consensus 80 Dclt~~~~n 88 (169)
T cd00544 80 DCLTLWVTN 88 (169)
T ss_pred EcHhHHHHH
Confidence 999877544
No 340
>PRK13949 shikimate kinase; Provisional
Probab=97.67 E-value=3.4e-05 Score=63.66 Aligned_cols=30 Identities=37% Similarity=0.596 Sum_probs=27.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCIS 30 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~ 30 (343)
|+|+|+||+|||++++.+|+.++.+++..+
T Consensus 4 I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 579999999999999999999999887655
No 341
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.67 E-value=0.0037 Score=56.71 Aligned_cols=129 Identities=16% Similarity=0.176 Sum_probs=69.7
Q ss_pred HHHHHHHHHh-c--CCcEEEecccccccccCCCC------chhHHHHHHHHHHHhhccCCCCCCCcEE-EEEec---CCC
Q psy4538 46 VRALFAVASV-H--QPSIIFIDEIDSLLCQRSDQ------ENETSRRLKTEFLISLDGASTLDDDLVL-VIGAT---NRP 112 (343)
Q Consensus 46 l~~~~~~~~~-~--~p~vl~iDeid~l~~~~~~~------~~~~~~~~~~~ll~~l~~~~~~~~~~v~-vi~~t---n~~ 112 (343)
+..++++... . -|.++.||++..++....-. -....-.+...|+..+.+.....++.++ .+++| +.+
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~ 221 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAP 221 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccccc
Confidence 3444554432 2 37788899999998663211 1122233445555554444443444443 24444 222
Q ss_pred c--hhhHHHHhccc---------------------eEEEEcCCCHHHHHHHHHHHHhhhCCC--CChhhHHHHHHHCCCC
Q psy4538 113 Q--ELDEAARRRLV---------------------KRLYIPLPDEQARCEIVTKLLRNITNS--LTVDDIEEVGRMTTDF 167 (343)
Q Consensus 113 ~--~l~~~l~~rf~---------------------~~i~~~~P~~~er~~il~~~l~~~~~~--~~~~~~~~la~~t~g~ 167 (343)
. .++..+..+-. ..++++..+.+|-+.+++.+....-.. ..++....--..+.|.
T Consensus 222 ~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~G 301 (309)
T PF10236_consen 222 KSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNG 301 (309)
T ss_pred CCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCC
Confidence 2 44544444221 268999999999999999887653222 2233333333334446
Q ss_pred CHHHHHH
Q psy4538 168 SGADMAS 174 (343)
Q Consensus 168 s~~dl~~ 174 (343)
+++++..
T Consensus 302 Np~el~k 308 (309)
T PF10236_consen 302 NPRELEK 308 (309)
T ss_pred CHHHhcc
Confidence 7877754
No 342
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.67 E-value=0.00046 Score=58.49 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=18.1
Q ss_pred CEEeCCCCchHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAA 20 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~ 20 (343)
++|.||+|+||||+++.++.
T Consensus 28 ~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 28 ILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred EEEECCCCCChHHHHHHHHH
Confidence 46899999999999999985
No 343
>PRK14532 adenylate kinase; Provisional
Probab=97.66 E-value=3.7e-05 Score=64.55 Aligned_cols=34 Identities=26% Similarity=0.491 Sum_probs=27.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTS 36 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~ 36 (343)
|++.||||+||||+++.+|+.+|..++ +..++..
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr 36 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLR 36 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHH
Confidence 578999999999999999999987654 5544433
No 344
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.0018 Score=55.62 Aligned_cols=130 Identities=13% Similarity=0.090 Sum_probs=87.8
Q ss_pred EEeCCCC-chHHHHHHHHHHHcCC---------cEEEEecccccccc-cchHHHHHHHHHHHHH----hcCCcEEEeccc
Q psy4538 2 LLFGPPG-TGKTLIGKCVAAQCKA---------TFFCISASTLTSKW-YGEGEKMVRALFAVAS----VHQPSIIFIDEI 66 (343)
Q Consensus 2 Ll~Gp~G-tGKT~la~~la~~l~~---------~~~~v~~~~l~~~~-~~~~~~~l~~~~~~~~----~~~p~vl~iDei 66 (343)
||.|..+ +||..++..++..+.. .++.+.+..-..+. ..-.-..++.+..... .....|++|+++
T Consensus 19 LfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViII~~a 98 (263)
T PRK06581 19 LIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAIIYSA 98 (263)
T ss_pred eEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEEEech
Confidence 7899998 9999999888877632 23333332110000 0012233444444332 235679999999
Q ss_pred ccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHh
Q psy4538 67 DSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLR 146 (343)
Q Consensus 67 d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~ 146 (343)
|.+- ....+.++..++.. ...++++..|..+..+.+.++||+. .+.++.|....-.+.+...+.
T Consensus 99 e~mt-----------~~AANALLKtLEEP----P~~t~fILit~~~~~LLpTIrSRCq-~i~~~~p~~~~~~e~~~~~~~ 162 (263)
T PRK06581 99 ELMN-----------LNAANSCLKILEDA----PKNSYIFLITSRAASIISTIRSRCF-KINVRSSILHAYNELYSQFIQ 162 (263)
T ss_pred HHhC-----------HHHHHHHHHhhcCC----CCCeEEEEEeCChhhCchhHhhceE-EEeCCCCCHHHHHHHHHHhcc
Confidence 9873 34567788888874 5567777788889999999999997 888999998877777766655
Q ss_pred h
Q psy4538 147 N 147 (343)
Q Consensus 147 ~ 147 (343)
.
T Consensus 163 p 163 (263)
T PRK06581 163 P 163 (263)
T ss_pred c
Confidence 3
No 345
>PRK06762 hypothetical protein; Provisional
Probab=97.64 E-value=0.00011 Score=60.31 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=28.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLT 35 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~ 35 (343)
++++|+||+||||+|+.+++.++..++.++...+.
T Consensus 5 i~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 5 IIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 47899999999999999999996566666665443
No 346
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.63 E-value=5.3e-05 Score=62.04 Aligned_cols=32 Identities=31% Similarity=0.570 Sum_probs=26.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTL 34 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l 34 (343)
+++.||+|+||||+++.+++.++..++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 579999999999999999999986654 44443
No 347
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.63 E-value=0.00061 Score=59.12 Aligned_cols=70 Identities=26% Similarity=0.425 Sum_probs=41.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccc-----------------------------cc--hHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKW-----------------------------YG--EGEKMV 46 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~-----------------------------~~--~~~~~l 46 (343)
+++.|+||||||+++..++... |...++++...-.... .+ +....+
T Consensus 27 ~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 106 (230)
T PRK08533 27 ILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEKRKFL 106 (230)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHHHHHH
Confidence 4799999999999976655433 5566666543211000 00 012233
Q ss_pred HHHHHHHHhcCCcEEEeccccccc
Q psy4538 47 RALFAVASVHQPSIIFIDEIDSLL 70 (343)
Q Consensus 47 ~~~~~~~~~~~p~vl~iDeid~l~ 70 (343)
..+........|.+++||++-.+.
T Consensus 107 ~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 107 KKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHhcCCCEEEEECccHHh
Confidence 344444444578999999998765
No 348
>KOG0482|consensus
Probab=97.62 E-value=8.5e-05 Score=69.34 Aligned_cols=174 Identities=17% Similarity=0.172 Sum_probs=93.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHH------HH--HHhcCCcEEEeccccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALF------AV--ASVHQPSIIFIDEIDSLLCQ 72 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~------~~--~~~~~p~vl~iDeid~l~~~ 72 (343)
|+|.|.||+.||-|.+++.+-...-.+..--. +.-+|-+...++.-. +- ......+|.+|||+|++...
T Consensus 378 icLmGDPGVAKSQLLkyi~rlapRgvYTTGrG---SSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~ 454 (721)
T KOG0482|consen 378 ICLMGDPGVAKSQLLKYISRLAPRGVYTTGRG---SSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES 454 (721)
T ss_pred EEecCCCchhHHHHHHHHHhcCcccceecCCC---CCccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhh
Confidence 57899999999999999998775444432111 111222222211110 00 01124569999999999543
Q ss_pred CCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCc-------------hhhHHHHhccc-eEEEEcCCCHHHHH
Q psy4538 73 RSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ-------------ELDEAARRRLV-KRLYIPLPDEQARC 138 (343)
Q Consensus 73 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~-------------~l~~~l~~rf~-~~i~~~~P~~~er~ 138 (343)
....-.+.... +++....-++...-+-+..|++++|+.+ .++.++++||+ .++-...|+.+.-.
T Consensus 455 DRtAIHEVMEQ--QTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~ 532 (721)
T KOG0482|consen 455 DRTAIHEVMEQ--QTISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDL 532 (721)
T ss_pred hhHHHHHHHHh--hhhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchH
Confidence 22211111110 1111111223233344566777777654 67899999999 45667889887777
Q ss_pred HHHHHHHhh----hCCC-----CChhhHH---HHHHHCCCCCHHHHHHHHHHH
Q psy4538 139 EIVTKLLRN----ITNS-----LTVDDIE---EVGRMTTDFSGADMASLCREA 179 (343)
Q Consensus 139 ~il~~~l~~----~~~~-----~~~~~~~---~la~~t~g~s~~dl~~l~~~a 179 (343)
.+.++..-- ..+. ++...+. .+++...-+.+.++...+..|
T Consensus 533 ~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~vp~~l~dyi~~A 585 (721)
T KOG0482|consen 533 RLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNPVVPEALADYITGA 585 (721)
T ss_pred HHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Confidence 776655421 1111 2333222 344555556666666555544
No 349
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.62 E-value=0.0023 Score=58.58 Aligned_cols=78 Identities=15% Similarity=0.134 Sum_probs=45.8
Q ss_pred CCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCc---------------hhhHH-HH
Q psy4538 57 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ---------------ELDEA-AR 120 (343)
Q Consensus 57 ~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~---------------~l~~~-l~ 120 (343)
.+-|++|||+|.+-+. ...+++..+..+.. ..++++|.+.+... ..... +.
T Consensus 172 ~~iViiIDdLDR~~~~-----------~i~~~l~~ik~~~~--~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLe 238 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSPE-----------EIVELLEAIKLLLD--FPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLE 238 (325)
T ss_pred ceEEEEEcchhcCCcH-----------HHHHHHHHHHHhcC--CCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHH
Confidence 4679999999988321 12233443433332 23455555543210 11122 33
Q ss_pred hccceEEEEcCCCHHHHHHHHHHHHhh
Q psy4538 121 RRLVKRLYIPLPDEQARCEIVTKLLRN 147 (343)
Q Consensus 121 ~rf~~~i~~~~P~~~er~~il~~~l~~ 147 (343)
+-+...+.+|.|+..+...++...+..
T Consensus 239 Kiiq~~~~lP~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 239 KIIQVPFSLPPPSPSDLERYLNELLES 265 (325)
T ss_pred hhcCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 356678999999999988888777654
No 350
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.62 E-value=4.9e-05 Score=61.29 Aligned_cols=27 Identities=37% Similarity=0.735 Sum_probs=24.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~ 27 (343)
++|+|+||+||||+++.+++.++..++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i 28 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI 28 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE
Confidence 579999999999999999999887665
No 351
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.61 E-value=5.6e-05 Score=63.95 Aligned_cols=97 Identities=19% Similarity=0.298 Sum_probs=49.4
Q ss_pred EEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccch----HHHHHHHHHHHHH---------hcCCcEEEecc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGE----GEKMVRALFAVAS---------VHQPSIIFIDE 65 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~----~~~~l~~~~~~~~---------~~~p~vl~iDe 65 (343)
++.||||||||++++.+...+ |..++.+.+..-....... ....+..++.... .....+|+|||
T Consensus 22 ~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDE 101 (196)
T PF13604_consen 22 VLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDE 101 (196)
T ss_dssp EEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEESS
T ss_pred EEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEEec
Confidence 678999999999999987655 5566666553321110000 0001111111110 12347999999
Q ss_pred cccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCc
Q psy4538 66 IDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ 113 (343)
Q Consensus 66 id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~ 113 (343)
+..+. ......++..... .+.+++++|-.+...
T Consensus 102 asmv~-----------~~~~~~ll~~~~~----~~~klilvGD~~QL~ 134 (196)
T PF13604_consen 102 ASMVD-----------SRQLARLLRLAKK----SGAKLILVGDPNQLP 134 (196)
T ss_dssp GGG-B-----------HHHHHHHHHHS-T-----T-EEEEEE-TTSHH
T ss_pred ccccC-----------HHHHHHHHHHHHh----cCCEEEEECCcchhc
Confidence 98662 2334444444433 255788888876533
No 352
>PRK14531 adenylate kinase; Provisional
Probab=97.61 E-value=4.9e-05 Score=63.57 Aligned_cols=32 Identities=31% Similarity=0.553 Sum_probs=26.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTL 34 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l 34 (343)
|+++||||+||||+++.+|+.+|.+++ ++.++
T Consensus 5 i~i~G~pGsGKsT~~~~la~~~g~~~i--s~gd~ 36 (183)
T PRK14531 5 LLFLGPPGAGKGTQAARLCAAHGLRHL--STGDL 36 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeE--ecccH
Confidence 579999999999999999999997765 44444
No 353
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.61 E-value=4.9e-05 Score=64.04 Aligned_cols=32 Identities=38% Similarity=0.621 Sum_probs=26.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTL 34 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l 34 (343)
|+|+||||+|||++++.+|+.+|..++ +..++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i--~~~~l 33 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI--STGDL 33 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECcHH
Confidence 689999999999999999999987665 44444
No 354
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.61 E-value=5.1e-05 Score=60.79 Aligned_cols=30 Identities=27% Similarity=0.493 Sum_probs=27.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCIS 30 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~ 30 (343)
|.+.|+||||||++++.++..+|.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 578999999999999999999999987665
No 355
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.60 E-value=0.00042 Score=65.16 Aligned_cols=120 Identities=23% Similarity=0.224 Sum_probs=68.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
++++||.+|||||+++.+.....-..+.++..+....... ....++.+. .........++|||++.+- .
T Consensus 40 ~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~-l~d~~~~~~-~~~~~~~~yifLDEIq~v~---------~ 108 (398)
T COG1373 40 ILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIE-LLDLLRAYI-ELKEREKSYIFLDEIQNVP---------D 108 (398)
T ss_pred EEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhh-HHHHHHHHH-HhhccCCceEEEecccCch---------h
Confidence 4799999999999998888887655666666555443221 111222222 2221245799999999772 1
Q ss_pred HHHHHHHHHHhhccCCCCCCCcEEEEEecCC--CchhhHHHHhccceEEEEcCCCHHHHHH
Q psy4538 81 SRRLKTEFLISLDGASTLDDDLVLVIGATNR--PQELDEAARRRLVKRLYIPLPDEQARCE 139 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~--~~~l~~~l~~rf~~~i~~~~P~~~er~~ 139 (343)
-.+.+..+.. .. ...+++.+++.. .....+.+..|. ..+.+.|-+..|...
T Consensus 109 W~~~lk~l~d---~~----~~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 109 WERALKYLYD---RG----NLDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred HHHHHHHHHc---cc----cceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 1222222222 11 114555554432 223344455574 478888888888854
No 356
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.60 E-value=0.00068 Score=55.52 Aligned_cols=102 Identities=17% Similarity=0.128 Sum_probs=55.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC--cEEEEeccccc--------cccc-----chHHHHHHHHHHHHHhcCCcEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA--TFFCISASTLT--------SKWY-----GEGEKMVRALFAVASVHQPSIIFIDE 65 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~--~~~~v~~~~l~--------~~~~-----~~~~~~l~~~~~~~~~~~p~vl~iDe 65 (343)
+.|.||+|+|||+|.+.++..... --+.++...+. .... -...+..+..+..+....|.++++||
T Consensus 29 ~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~illlDE 108 (163)
T cd03216 29 HALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLILDE 108 (163)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 358999999999999999987621 01222221111 0000 01223344555666678899999999
Q ss_pred cccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchh
Q psy4538 66 IDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQEL 115 (343)
Q Consensus 66 id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l 115 (343)
--.- .+....+.+..++..+.. . ...+|.+|...+.+
T Consensus 109 P~~~-------LD~~~~~~l~~~l~~~~~-----~-~~tiii~sh~~~~~ 145 (163)
T cd03216 109 PTAA-------LTPAEVERLFKVIRRLRA-----Q-GVAVIFISHRLDEV 145 (163)
T ss_pred CCcC-------CCHHHHHHHHHHHHHHHH-----C-CCEEEEEeCCHHHH
Confidence 7532 233444444455544421 1 12445566654443
No 357
>PHA02774 E1; Provisional
Probab=97.60 E-value=0.00032 Score=67.56 Aligned_cols=31 Identities=23% Similarity=0.585 Sum_probs=25.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEE-EEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFF-CISA 31 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~-~v~~ 31 (343)
++|+||||||||+++.++++.++..++ .+|.
T Consensus 437 iv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 437 LVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 589999999999999999999865443 3554
No 358
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.59 E-value=0.00099 Score=63.06 Aligned_cols=198 Identities=17% Similarity=0.182 Sum_probs=93.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccccccc---------------ccc-----hHHHHHHHHHHHHHhcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSK---------------WYG-----EGEKMVRALFAVASVHQ 57 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~---------------~~~-----~~~~~l~~~~~~~~~~~ 57 (343)
++++|++|+||||++..+|..+ |..+..+++..+... ..+ .....+...+..+..
T Consensus 98 I~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~~-- 175 (437)
T PRK00771 98 IMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFKK-- 175 (437)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhhc--
Confidence 5789999999999999998877 556666665433210 000 111223333333332
Q ss_pred CcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHH--HHhccc-eEEEEcCCCH
Q psy4538 58 PSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEA--ARRRLV-KRLYIPLPDE 134 (343)
Q Consensus 58 p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~--l~~rf~-~~i~~~~P~~ 134 (343)
..+++||....+. ....+..++........ +...++++-++...+.++.. +...+. .-+-+...+.
T Consensus 176 ~DvVIIDTAGr~~---------~d~~lm~El~~l~~~~~--pdevlLVvda~~gq~av~~a~~F~~~l~i~gvIlTKlD~ 244 (437)
T PRK00771 176 ADVIIVDTAGRHA---------LEEDLIEEMKEIKEAVK--PDEVLLVIDATIGQQAKNQAKAFHEAVGIGGIIITKLDG 244 (437)
T ss_pred CCEEEEECCCccc---------chHHHHHHHHHHHHHhc--ccceeEEEeccccHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 3689998775441 11122222222211111 12233444433332333221 111121 1244555555
Q ss_pred HHHHHHHHHHHhhhC------------CCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccCh
Q psy4538 135 QARCEIVTKLLRNIT------------NSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISI 202 (343)
Q Consensus 135 ~er~~il~~~l~~~~------------~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~ 202 (343)
..+---+-......+ ..+.+...+.++.+.-| .+|+..+++.+...--......-.........+.
T Consensus 245 ~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilg--mgd~~~l~e~~~~~~~~~~~~~~~~~~~~~~f~l 322 (437)
T PRK00771 245 TAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLG--MGDLESLLEKVEEALDEEEEEKDVEKMMKGKFTL 322 (437)
T ss_pred CCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhC--CCChHHHHHHHHHhhhHHHHHHHHHHHHcCCcCH
Confidence 444432222222111 12233356677777654 4788888887753211100000001112345788
Q ss_pred hHHHHHHHhcC
Q psy4538 203 DDFRDALKTVR 213 (343)
Q Consensus 203 ~d~~~a~~~~~ 213 (343)
+||.+.++.++
T Consensus 323 ~d~~~q~~~~~ 333 (437)
T PRK00771 323 KDMYKQLEAMN 333 (437)
T ss_pred HHHHHHHHHHH
Confidence 99988777765
No 359
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.57 E-value=0.00027 Score=62.70 Aligned_cols=68 Identities=25% Similarity=0.326 Sum_probs=35.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccc---cc-cchHHHHHHHHH----HHHHhcCCcEEEecccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTS---KW-YGEGEKMVRALF----AVASVHQPSIIFIDEIDSL 69 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~---~~-~~~~~~~l~~~~----~~~~~~~p~vl~iDeid~l 69 (343)
|+|+|.||+|||++|+.++..+ +..+..++...+.- .| ....++..+..+ .... ....|+++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~l-s~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERAL-SKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHH-TT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhh-ccCeEEEEeCCchH
Confidence 5799999999999999998875 56677776544431 11 112233333333 3332 34578999988765
No 360
>PRK10536 hypothetical protein; Provisional
Probab=97.57 E-value=0.00036 Score=60.74 Aligned_cols=21 Identities=43% Similarity=0.572 Sum_probs=19.0
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
+++.||+|||||+++.+++.+
T Consensus 77 V~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 77 IFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999884
No 361
>PRK09354 recA recombinase A; Provisional
Probab=97.56 E-value=0.00047 Score=62.99 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=46.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccc----------------cccchHHHHHHHHHHHHHhcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTS----------------KWYGEGEKMVRALFAVASVHQPSII 61 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~----------------~~~~~~~~~l~~~~~~~~~~~p~vl 61 (343)
++++||+|||||+|+..++.+. |...++++...-.. ..+...++.+..+-...+...+.++
T Consensus 63 teI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~lI 142 (349)
T PRK09354 63 VEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDLI 142 (349)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCCEE
Confidence 3699999999999999886543 66777777644211 1111233333333333445678899
Q ss_pred Eecccccccc
Q psy4538 62 FIDEIDSLLC 71 (343)
Q Consensus 62 ~iDeid~l~~ 71 (343)
+||-+-.+.+
T Consensus 143 VIDSvaaL~~ 152 (349)
T PRK09354 143 VVDSVAALVP 152 (349)
T ss_pred EEeChhhhcc
Confidence 9999998875
No 362
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.55 E-value=6.1e-05 Score=57.11 Aligned_cols=23 Identities=39% Similarity=0.777 Sum_probs=21.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
|.|+||||+|||++++.++..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999988774
No 363
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.55 E-value=5e-05 Score=63.05 Aligned_cols=34 Identities=18% Similarity=0.395 Sum_probs=28.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTL 34 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l 34 (343)
++|.|+||+||||+++.+++.++.+++.++...+
T Consensus 5 i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~ 38 (175)
T cd00227 5 IILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF 38 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCccccCccHH
Confidence 5799999999999999999999877766554433
No 364
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.54 E-value=0.00023 Score=60.25 Aligned_cols=69 Identities=22% Similarity=0.347 Sum_probs=41.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC--------CcEEEEeccc-ccccccc-------------hHHHHHHHHHHHHHhcCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK--------ATFFCISAST-LTSKWYG-------------EGEKMVRALFAVASVHQP 58 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~--------~~~~~v~~~~-l~~~~~~-------------~~~~~l~~~~~~~~~~~p 58 (343)
.|+.||||+||||+.|-+|.-+. ..+..++... +..-..| ...-.-..+....+.+.|
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~P 219 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMSP 219 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhcCC
Confidence 37899999999999999998762 2333444322 1111000 011112333445566889
Q ss_pred cEEEecccccc
Q psy4538 59 SIIFIDEIDSL 69 (343)
Q Consensus 59 ~vl~iDeid~l 69 (343)
-|+++||+...
T Consensus 220 EViIvDEIGt~ 230 (308)
T COG3854 220 EVIIVDEIGTE 230 (308)
T ss_pred cEEEEeccccH
Confidence 99999999753
No 365
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.54 E-value=0.0024 Score=55.29 Aligned_cols=127 Identities=13% Similarity=0.197 Sum_probs=66.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc--EEEEeccccccccc--------------chHHHH-------HHHHHHHHHh--
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT--FFCISASTLTSKWY--------------GEGEKM-------VRALFAVASV-- 55 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~--~~~v~~~~l~~~~~--------------~~~~~~-------l~~~~~~~~~-- 55 (343)
+++.|++|||||+++..+...+... .+.+-+......+. .+.+.. +.+.......
T Consensus 16 ~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~~~k 95 (241)
T PF04665_consen 16 MVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSPQKK 95 (241)
T ss_pred EEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhcccC
Confidence 4689999999999999998776432 22222111111110 000111 1111111111
Q ss_pred -cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCH
Q psy4538 56 -HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDE 134 (343)
Q Consensus 56 -~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~ 134 (343)
..+.+|++||+..- .........+...-+ ...+.+|..+.....+++.++......+-+. -+.
T Consensus 96 ~~~~~LiIlDD~~~~---------~~k~~~l~~~~~~gR------H~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~-~s~ 159 (241)
T PF04665_consen 96 NNPRFLIILDDLGDK---------KLKSKILRQFFNNGR------HYNISIIFLSQSYFHLPPNIRSNIDYFIIFN-NSK 159 (241)
T ss_pred CCCCeEEEEeCCCCc---------hhhhHHHHHHHhccc------ccceEEEEEeeecccCCHHHhhcceEEEEec-CcH
Confidence 23678999997421 011222333433211 2346777778888899999988777666564 344
Q ss_pred HHHHHHHHH
Q psy4538 135 QARCEIVTK 143 (343)
Q Consensus 135 ~er~~il~~ 143 (343)
.....+++.
T Consensus 160 ~dl~~i~~~ 168 (241)
T PF04665_consen 160 RDLENIYRN 168 (241)
T ss_pred HHHHHHHHh
Confidence 444444443
No 366
>PRK14530 adenylate kinase; Provisional
Probab=97.54 E-value=6.9e-05 Score=64.40 Aligned_cols=29 Identities=31% Similarity=0.493 Sum_probs=25.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI 29 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v 29 (343)
|+|.||||+||||+++.+|+.+|.+++..
T Consensus 6 I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 6 ILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 57899999999999999999999776533
No 367
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.54 E-value=0.00062 Score=54.91 Aligned_cols=37 Identities=22% Similarity=0.414 Sum_probs=30.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSK 37 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~ 37 (343)
|.|+|.||+|||++|+++.+.+ |.+.+.++...+...
T Consensus 5 IwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~ 44 (156)
T PF01583_consen 5 IWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHG 44 (156)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhc
Confidence 4689999999999999999877 788888887766543
No 368
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.54 E-value=0.00069 Score=71.60 Aligned_cols=133 Identities=19% Similarity=0.236 Sum_probs=86.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccc------ccccchHH---HHHHHHHHHHHhcCCcEEEecccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLT------SKWYGEGE---KMVRALFAVASVHQPSIIFIDEIDSLLC 71 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~------~~~~~~~~---~~l~~~~~~~~~~~p~vl~iDeid~l~~ 71 (343)
+|+.||+.+|||+++..+|++.|..|+.+|-.+.. +.|+-... ..-..++-+|. +++-.+++||+...
T Consensus 891 ~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAl-R~GyWIVLDELNLA-- 967 (4600)
T COG5271 891 LLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEAL-RRGYWIVLDELNLA-- 967 (4600)
T ss_pred EEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHH-hcCcEEEeeccccC--
Confidence 58999999999999999999999999999876542 12211110 11122333333 34568999999743
Q ss_pred cCCCCchhHHHHHHHHHHHhhccCCC----------CCCCcEEEEEecCCCc------hhhHHHHhccceEEEEcCCCHH
Q psy4538 72 QRSDQENETSRRLKTEFLISLDGAST----------LDDDLVLVIGATNRPQ------ELDEAARRRLVKRLYIPLPDEQ 135 (343)
Q Consensus 72 ~~~~~~~~~~~~~~~~ll~~l~~~~~----------~~~~~v~vi~~tn~~~------~l~~~l~~rf~~~i~~~~P~~~ 135 (343)
...++..+-+.++.... .+...+.+.+|-|+|. .+..+++.||- .++|.--.++
T Consensus 968 ---------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFl-E~hFddiped 1037 (4600)
T COG5271 968 ---------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFL-EMHFDDIPED 1037 (4600)
T ss_pred ---------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhH-hhhcccCcHH
Confidence 12344444444443221 1334566777778775 57788999997 6777776778
Q ss_pred HHHHHHHHHHh
Q psy4538 136 ARCEIVTKLLR 146 (343)
Q Consensus 136 er~~il~~~l~ 146 (343)
+...|+...++
T Consensus 1038 Ele~ILh~rc~ 1048 (4600)
T COG5271 1038 ELEEILHGRCE 1048 (4600)
T ss_pred HHHHHHhccCc
Confidence 88888876543
No 369
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.53 E-value=0.00089 Score=58.90 Aligned_cols=34 Identities=26% Similarity=0.474 Sum_probs=27.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTL 34 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l 34 (343)
|+|+|+||+||||+|+.+++.+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 5799999999999999999987 455666655433
No 370
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.53 E-value=5.7e-05 Score=61.04 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=25.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCIS 30 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~ 30 (343)
++++|.||+||||+++.++ ++|..++.++
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 5789999999999999999 9998887655
No 371
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.53 E-value=0.00032 Score=56.56 Aligned_cols=34 Identities=21% Similarity=0.468 Sum_probs=27.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTL 34 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l 34 (343)
++++|+||+|||++++.++..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 5789999999999999999988 666666665433
No 372
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.52 E-value=0.0068 Score=48.90 Aligned_cols=131 Identities=14% Similarity=0.206 Sum_probs=74.1
Q ss_pred eCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhHHHH
Q psy4538 4 FGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENETSRR 83 (343)
Q Consensus 4 ~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~~~~ 83 (343)
.+.+||||||++.++++..|- +-.+...++.++ ...+.++.+.+........+++.|-=... .+
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~------------~r 68 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQ------------KR 68 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCch------------HH
Confidence 478999999999999999983 334455555443 34455666666664445668888743322 23
Q ss_pred HHHHHHHhhccCCC---CCCCcEEEEEecCCCc-hhh-------HHHHhccc--eEEEEcCCCHHHHHHHHHHHHhhhCC
Q psy4538 84 LKTEFLISLDGAST---LDDDLVLVIGATNRPQ-ELD-------EAARRRLV--KRLYIPLPDEQARCEIVTKLLRNITN 150 (343)
Q Consensus 84 ~~~~ll~~l~~~~~---~~~~~v~vi~~tn~~~-~l~-------~~l~~rf~--~~i~~~~P~~~er~~il~~~l~~~~~ 150 (343)
-..++...+..... .....+-+|+-.=... .++ ..+..|-+ ..|.....+...-..|+..+++.+..
T Consensus 69 eR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rfep 148 (168)
T PF08303_consen 69 ERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRFEP 148 (168)
T ss_pred HHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhcCC
Confidence 33344433333221 0122444554431111 121 12223544 55777777788888888888877643
No 373
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.52 E-value=0.00042 Score=64.01 Aligned_cols=22 Identities=45% Similarity=0.788 Sum_probs=19.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
++|.||+|+||||++..+|..+
T Consensus 140 i~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 140 FALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999998764
No 374
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.51 E-value=0.0007 Score=59.30 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA 24 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~ 24 (343)
++|.||+|+|||++++.+++.+..
T Consensus 19 ~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 19 GLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred EEEECCCCCCHHHHHHHHHhcccc
Confidence 478999999999999999998754
No 375
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.51 E-value=7.7e-05 Score=64.53 Aligned_cols=33 Identities=24% Similarity=0.517 Sum_probs=27.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLT 35 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~ 35 (343)
|+|.||||+||||+++.+|+.+|.+++ +..++.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g~~~i--s~gdll 41 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKENLKHI--NMGNIL 41 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE--ECChHH
Confidence 578999999999999999999997765 444443
No 376
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.50 E-value=0.00015 Score=66.85 Aligned_cols=67 Identities=21% Similarity=0.303 Sum_probs=41.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC----cEEEEe-ccccc---------ccccchHHHHHHHHHHHHHhcCCcEEEeccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA----TFFCIS-ASTLT---------SKWYGEGEKMVRALFAVASVHQPSIIFIDEI 66 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~----~~~~v~-~~~l~---------~~~~~~~~~~l~~~~~~~~~~~p~vl~iDei 66 (343)
++++||+|+||||+++++...+.. .++.+. ..++. ....+.........+..+....|.++++||+
T Consensus 125 ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vgEi 204 (343)
T TIGR01420 125 ILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIGEM 204 (343)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEeCC
Confidence 589999999999999999987642 233221 11111 0011211123455556666689999999998
Q ss_pred c
Q psy4538 67 D 67 (343)
Q Consensus 67 d 67 (343)
-
T Consensus 205 r 205 (343)
T TIGR01420 205 R 205 (343)
T ss_pred C
Confidence 5
No 377
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.50 E-value=0.0011 Score=53.95 Aligned_cols=67 Identities=28% Similarity=0.467 Sum_probs=39.7
Q ss_pred EEeCCCCchHHHHHHHHHHHcCCc--EEEEecccccc-------cccc-----hHHHHHHHHHHHHHhcCCcEEEecccc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCKAT--FFCISASTLTS-------KWYG-----EGEKMVRALFAVASVHQPSIIFIDEID 67 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~~~--~~~v~~~~l~~-------~~~~-----~~~~~l~~~~~~~~~~~p~vl~iDeid 67 (343)
.|.||+|+|||++++.++..+... -+.++...... ...+ ...+..+..+..+....|.++++||..
T Consensus 29 ~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~ 108 (157)
T cd00267 29 ALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLDEPT 108 (157)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 689999999999999999876421 12222221110 0000 111223333455555679999999986
Q ss_pred c
Q psy4538 68 S 68 (343)
Q Consensus 68 ~ 68 (343)
.
T Consensus 109 ~ 109 (157)
T cd00267 109 S 109 (157)
T ss_pred c
Confidence 4
No 378
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.50 E-value=0.00079 Score=55.86 Aligned_cols=68 Identities=26% Similarity=0.285 Sum_probs=39.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc--EEEEecccc--ccccc-chHHHHHHHHHHHHHhcCCcEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT--FFCISASTL--TSKWY-GEGEKMVRALFAVASVHQPSIIFIDEIDS 68 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~--~~~v~~~~l--~~~~~-~~~~~~l~~~~~~~~~~~p~vl~iDeid~ 68 (343)
+.|.||+|+|||||++.++..+... -+.++...+ ..... -...+..+..+..+....|.++++||--.
T Consensus 28 ~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 28 IGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred EEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 3589999999999999999876211 112221111 00000 11222334445555667899999999753
No 379
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.50 E-value=0.0004 Score=60.46 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=25.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---------CCcEEEEeccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---------KATFFCISAST 33 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---------~~~~~~v~~~~ 33 (343)
+.|+||||+|||+++..++... +...++++...
T Consensus 22 ~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 22 TEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 3689999999999999998553 25667777644
No 380
>PRK06547 hypothetical protein; Provisional
Probab=97.49 E-value=8.3e-05 Score=61.42 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=25.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCIS 30 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~ 30 (343)
|++.|++|||||++++.+++.++.+++..+
T Consensus 18 i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 18 VLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 468899999999999999999988766543
No 381
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.49 E-value=0.00015 Score=68.01 Aligned_cols=61 Identities=25% Similarity=0.331 Sum_probs=43.0
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcC--------------------CCCCCCCcEEEEeecCCcc---
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDG--------------------ASTLDDDLVLVIGATNRPQ--- 280 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg--------------------~~~~~~~~v~vi~aTN~~~--- 280 (343)
.|+||||||++.-- ..++.+++++.|+. +.- ...|++|||+|..|
T Consensus 272 ~~~vliIDEINRan----------i~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~i--P~Nl~IIgTMNt~Drs~ 339 (459)
T PRK11331 272 KKYVFIIDEINRAN----------LSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYV--PENVYIIGLMNTADRSL 339 (459)
T ss_pred CCcEEEEehhhccC----------HHHhhhhhhhhccccccccccceeeeccccccccccC--CCCeEEEEecCccccch
Confidence 58999999998632 23455555555552 111 13489999999999
Q ss_pred -cccHHHHHhhhceEecc
Q psy4538 281 -ELDEAARRRLVKRLYIP 297 (343)
Q Consensus 281 -~lD~allRR~d~~i~~~ 297 (343)
.+|.||+|||.+ |.+.
T Consensus 340 ~~lD~AlrRRF~f-i~i~ 356 (459)
T PRK11331 340 AVVDYALRRRFSF-IDIE 356 (459)
T ss_pred hhccHHHHhhhhe-EEec
Confidence 899999999966 3443
No 382
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.49 E-value=0.00071 Score=58.01 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=18.0
Q ss_pred CEEeCCCCchHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAA 20 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~ 20 (343)
++|+||.|+|||++.+.++.
T Consensus 32 ~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 32 MVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred EEEECCCCCChHHHHHHHHH
Confidence 47999999999999999983
No 383
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.48 E-value=0.0034 Score=58.55 Aligned_cols=159 Identities=16% Similarity=0.179 Sum_probs=81.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-------CCcEEEEeccccccc----------------ccchHHHHHHHHHHHHHhcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-------KATFFCISASTLTSK----------------WYGEGEKMVRALFAVASVHQ 57 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-------~~~~~~v~~~~l~~~----------------~~~~~~~~l~~~~~~~~~~~ 57 (343)
++++||+|+||||++..+|..+ |..+..+++...... ........+...+... ..
T Consensus 177 i~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~--~~ 254 (388)
T PRK12723 177 FILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS--KD 254 (388)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh--CC
Confidence 4789999999999999998765 234444444332110 0111222233333332 45
Q ss_pred CcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhc--cc-eEEEEcCCCH
Q psy4538 58 PSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRR--LV-KRLYIPLPDE 134 (343)
Q Consensus 58 p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~r--f~-~~i~~~~P~~ 134 (343)
..+++||.+..... . . ..+.++...++.... +...++|+.+|.....+...+.+. +. ..+-+...|.
T Consensus 255 ~DlVLIDTaGr~~~-----~-~---~~l~el~~~l~~~~~-~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlDe 324 (388)
T PRK12723 255 FDLVLVDTIGKSPK-----D-F---MKLAEMKELLNACGR-DAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDE 324 (388)
T ss_pred CCEEEEcCCCCCcc-----C-H---HHHHHHHHHHHhcCC-CCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeccC
Confidence 67999999986521 1 1 112333333333221 224566777776666776555441 21 3466777776
Q ss_pred HHHHHHHHHHHhhhCC---------C----CChhhHHHHHHHCCCCCHHH
Q psy4538 135 QARCEIVTKLLRNITN---------S----LTVDDIEEVGRMTTDFSGAD 171 (343)
Q Consensus 135 ~er~~il~~~l~~~~~---------~----~~~~~~~~la~~t~g~s~~d 171 (343)
..+.--+-..+...+. . +...+...+++...||+.++
T Consensus 325 t~~~G~~l~~~~~~~~Pi~yit~Gq~vPeDl~~~~~~~~~~~l~g~~~~~ 374 (388)
T PRK12723 325 TTCVGNLISLIYEMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYRISD 374 (388)
T ss_pred CCcchHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHhcCCCccc
Confidence 6665444333332211 1 12223445666666666655
No 384
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.48 E-value=7.6e-05 Score=60.79 Aligned_cols=30 Identities=33% Similarity=0.542 Sum_probs=27.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCIS 30 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~ 30 (343)
|.|+|++|+||||+.+++|+.++.+|+..+
T Consensus 5 IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 5 IVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred EEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 579999999999999999999999998554
No 385
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.48 E-value=0.00027 Score=65.10 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
.+|+||||+|||+|++.+++...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHH
Confidence 37899999999999999998774
No 386
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.47 E-value=0.00097 Score=53.42 Aligned_cols=65 Identities=20% Similarity=0.348 Sum_probs=39.0
Q ss_pred EEeCCCCchHHHHHHHHHHHcCCc--EEEEeccc---ccccccchHHHHHHHHHHHHHhcCCcEEEeccccc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCKAT--FFCISAST---LTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDS 68 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~~~--~~~v~~~~---l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~ 68 (343)
.|.||+|+|||++++.++...... -+.++... +.... ...+..+..+..+...+|.++++||-..
T Consensus 30 ~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~l--S~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 30 GLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQL--SGGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred EEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccC--CHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 589999999999999999876311 01111110 00001 1122333444555667899999999763
No 387
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.47 E-value=0.00018 Score=62.93 Aligned_cols=70 Identities=27% Similarity=0.393 Sum_probs=47.1
Q ss_pred CEEeCCCCchHHHHHHHHHH------HcCCcEEEEecccccccccch-HHHHHHHHHHH--------HHhcCCcEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAA------QCKATFFCISASTLTSKWYGE-GEKMVRALFAV--------ASVHQPSIIFIDE 65 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~------~l~~~~~~v~~~~l~~~~~~~-~~~~l~~~~~~--------~~~~~p~vl~iDe 65 (343)
|||.||.|.|||.+|+.+-. ++..+|++|||..+.+..... .-..++..|.- .+...+..||+||
T Consensus 211 ~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlflde 290 (531)
T COG4650 211 ILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFLDE 290 (531)
T ss_pred eEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEehHh
Confidence 68999999999999998843 557799999999886542100 00111222211 1234578999999
Q ss_pred ccccc
Q psy4538 66 IDSLL 70 (343)
Q Consensus 66 id~l~ 70 (343)
+..+.
T Consensus 291 igelg 295 (531)
T COG4650 291 IGELG 295 (531)
T ss_pred hhhcC
Confidence 99884
No 388
>PRK10867 signal recognition particle protein; Provisional
Probab=97.47 E-value=0.0018 Score=61.22 Aligned_cols=200 Identities=17% Similarity=0.188 Sum_probs=95.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----CCcEEEEecccccccc-------------------c-chHHHHHHHHHHHHHhc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----KATFFCISASTLTSKW-------------------Y-GEGEKMVRALFAVASVH 56 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----~~~~~~v~~~~l~~~~-------------------~-~~~~~~l~~~~~~~~~~ 56 (343)
++++|++|+||||++..+|..+ |..+..+++....... . .............+...
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~~ 182 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKEN 182 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHhc
Confidence 4789999999999887777654 5666777665332210 0 01222233444455545
Q ss_pred CCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhh--HHHHhccc-eEEEEcCCC
Q psy4538 57 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELD--EAARRRLV-KRLYIPLPD 133 (343)
Q Consensus 57 ~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~--~~l~~rf~-~~i~~~~P~ 133 (343)
...++++|=...+.. + .....++....+... +...++|+-++...+.++ ..+..++. .-+-+...+
T Consensus 183 ~~DvVIIDTaGrl~~------d---~~lm~eL~~i~~~v~--p~evllVlda~~gq~av~~a~~F~~~~~i~giIlTKlD 251 (433)
T PRK10867 183 GYDVVIVDTAGRLHI------D---EELMDELKAIKAAVN--PDEILLVVDAMTGQDAVNTAKAFNEALGLTGVILTKLD 251 (433)
T ss_pred CCCEEEEeCCCCccc------C---HHHHHHHHHHHHhhC--CCeEEEEEecccHHHHHHHHHHHHhhCCCCEEEEeCcc
Confidence 677888886554310 1 111222222111111 122233333332112222 22333332 234555555
Q ss_pred HHHHHHHHHHHHhhhC------------CCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccC
Q psy4538 134 EQARCEIVTKLLRNIT------------NSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPIS 201 (343)
Q Consensus 134 ~~er~~il~~~l~~~~------------~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~ 201 (343)
...+.-.........+ ..+.+...+.++.+.-| .+|+..+++.|...--................+
T Consensus 252 ~~~rgG~alsi~~~~~~PI~fig~Ge~v~DLe~f~p~~~~~~ilg--mgD~~~l~e~~~~~~~~~~~~~~~~~~~~g~f~ 329 (433)
T PRK10867 252 GDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILG--MGDVLSLIEKAQEVVDEEKAEKLAKKLKKGKFD 329 (433)
T ss_pred CcccccHHHHHHHHHCcCEEEEeCCCccccCccCCHHHHHHHHhC--CCChHHHHHHHHHhhCHHHHHHHHHHHHhCCCC
Confidence 5444433333322211 12233355667777654 578888888775321111000001111224578
Q ss_pred hhHHHHHHHhcC
Q psy4538 202 IDDFRDALKTVR 213 (343)
Q Consensus 202 ~~d~~~a~~~~~ 213 (343)
.+||...++.+.
T Consensus 330 l~d~~~q~~~~~ 341 (433)
T PRK10867 330 LEDFLEQLQQMK 341 (433)
T ss_pred HHHHHHHHHHHH
Confidence 899988777765
No 389
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.47 E-value=9.8e-05 Score=61.27 Aligned_cols=32 Identities=31% Similarity=0.655 Sum_probs=25.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTL 34 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l 34 (343)
|+|.||||+||||+|+.+++.++.+ .++..++
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~i~--hlstgd~ 34 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLGLP--HLDTGDI 34 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc--EEcHhHH
Confidence 5799999999999999999996654 4554443
No 390
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.47 E-value=9.9e-05 Score=63.19 Aligned_cols=28 Identities=32% Similarity=0.629 Sum_probs=25.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~ 28 (343)
|++.||||+||||+++.+|+.+|.+++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 5899999999999999999999876654
No 391
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.46 E-value=0.00093 Score=63.85 Aligned_cols=72 Identities=26% Similarity=0.319 Sum_probs=47.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccccccccc------ch--------HHHHHHHHHHHHHhcCCcEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWY------GE--------GEKMVRALFAVASVHQPSIIFI 63 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~------~~--------~~~~l~~~~~~~~~~~p~vl~i 63 (343)
++++|+||+|||+++..++..+ +.++++++..+...... +. .+..+..+........|.+++|
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~~~vVI 176 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENPQACVI 176 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCCcEEEE
Confidence 4799999999999999997755 45677777654321110 00 0112334444445567999999
Q ss_pred ccccccccc
Q psy4538 64 DEIDSLLCQ 72 (343)
Q Consensus 64 Deid~l~~~ 72 (343)
|.+..+...
T Consensus 177 DSIq~l~~~ 185 (454)
T TIGR00416 177 DSIQTLYSP 185 (454)
T ss_pred ecchhhccc
Confidence 999988643
No 392
>PF13245 AAA_19: Part of AAA domain
Probab=97.46 E-value=0.00017 Score=50.89 Aligned_cols=30 Identities=30% Similarity=0.563 Sum_probs=20.3
Q ss_pred EEeCCCCchHH-HHHHHHHHHc------CCcEEEEec
Q psy4538 2 LLFGPPGTGKT-LIGKCVAAQC------KATFFCISA 31 (343)
Q Consensus 2 Ll~Gp~GtGKT-~la~~la~~l------~~~~~~v~~ 31 (343)
++.|||||||| ++++.++... +..++.+..
T Consensus 14 vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 14 VVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 46999999999 5666666655 444555543
No 393
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00042 Score=63.55 Aligned_cols=104 Identities=21% Similarity=0.343 Sum_probs=67.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHc--CCcEEEEecccccccc--------------cchHHHHHHHHHHHHHhcCCcEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC--KATFFCISASTLTSKW--------------YGEGEKMVRALFAVASVHQPSIIFID 64 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l--~~~~~~v~~~~l~~~~--------------~~~~~~~l~~~~~~~~~~~p~vl~iD 64 (343)
+|+-|.||.|||||.-.++..+ ..++++|+..+-.... .-..+..+..+.......+|.+++||
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVID 175 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVID 175 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEEe
Confidence 5788999999999998888776 2378899886643221 11234456777777777899999999
Q ss_pred ccccccccCCC---CchhHHHHHHHHHHHhhccCCCCCCCcEEEEEe
Q psy4538 65 EIDSLLCQRSD---QENETSRRLKTEFLISLDGASTLDDDLVLVIGA 108 (343)
Q Consensus 65 eid~l~~~~~~---~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~ 108 (343)
-|..+....-+ +.-.+.+.....+++.-.. .+-.+++++-
T Consensus 176 SIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~----~~i~~fiVGH 218 (456)
T COG1066 176 SIQTLYSEEITSAPGSVSQVREVAAELMRLAKT----KNIAIFIVGH 218 (456)
T ss_pred ccceeecccccCCCCcHHHHHHHHHHHHHHHHH----cCCeEEEEEE
Confidence 99999765422 2222334444444443332 2445566653
No 394
>PRK08233 hypothetical protein; Provisional
Probab=97.44 E-value=0.0017 Score=54.01 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=24.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC-CcEEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK-ATFFCISA 31 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~-~~~~~v~~ 31 (343)
|.+.|+||+||||+++.++..++ ..++..+.
T Consensus 6 I~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 6 ITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 46789999999999999999986 44444443
No 395
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.44 E-value=0.00012 Score=60.48 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=26.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCIS 30 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~ 30 (343)
++|+|++|+|||++++.+|+.+|.+++..+
T Consensus 5 i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 5 LFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 478999999999999999999999987543
No 396
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.44 E-value=0.00067 Score=59.06 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=25.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISAS 32 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~ 32 (343)
++++|+||+|||+++.+++.+. |.++++++..
T Consensus 28 ~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 28 ILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 4789999999999999997643 6677776653
No 397
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.44 E-value=0.0018 Score=54.40 Aligned_cols=132 Identities=16% Similarity=0.190 Sum_probs=59.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
.+|+||+|||||.++-.+|++.|.+++..+.-.......-.+.+.. -.+.. .-+ =++|||-.-- . + .-.
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~---~~el~-~~~-RiyL~~r~l~--~---G-~i~ 72 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPT---PSELK-GTR-RIYLDDRPLS--D---G-IIN 72 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT------SGGGT-T-E-EEES----GG--G-----S--
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCC---HHHHc-ccc-eeeecccccc--C---C-CcC
Confidence 3789999999999999999999999999987665543221111110 00111 112 2777754321 1 1 112
Q ss_pred HHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhc-----cc-eEEEEcCCCHHHHHHHHHHHHhh
Q psy4538 81 SRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRR-----LV-KRLYIPLPDEQARCEIVTKLLRN 147 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~r-----f~-~~i~~~~P~~~er~~il~~~l~~ 147 (343)
.......++..+..... .+.+++=| -....+..-..++ |. ....++.|+.+.-..-.++..++
T Consensus 73 a~ea~~~Li~~v~~~~~--~~~~IlEG--GSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ 141 (233)
T PF01745_consen 73 AEEAHERLISEVNSYSA--HGGLILEG--GSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQ 141 (233)
T ss_dssp HHHHHHHHHHHHHTTTT--SSEEEEEE----HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc--cCceEEeC--chHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHH
Confidence 23344455555555554 33333333 2333444444443 33 34567888887766555544444
No 398
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.44 E-value=0.00027 Score=62.61 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
+++.||+|+||||+.+.++..+.
T Consensus 114 ~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 114 TLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred EEEEcCCCCCHHHHHHHHhCccC
Confidence 37899999999999999999874
No 399
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.44 E-value=0.00012 Score=61.41 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=23.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~ 27 (343)
+++.||||+||||+++.+++.+|...+
T Consensus 6 i~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 6 IFIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 468999999999999999999986654
No 400
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.43 E-value=0.00024 Score=65.86 Aligned_cols=67 Identities=19% Similarity=0.279 Sum_probs=42.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC-----CcEEEEec-cccc-----------ccccchHHHHHHHHHHHHHhcCCcEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK-----ATFFCISA-STLT-----------SKWYGEGEKMVRALFAVASVHQPSIIFI 63 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~-----~~~~~v~~-~~l~-----------~~~~~~~~~~l~~~~~~~~~~~p~vl~i 63 (343)
++++||+|+||||+++++...+. ...+.+.- .++. ....+.........++.+.+..|.++++
T Consensus 152 ilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~v 231 (372)
T TIGR02525 152 GLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIGV 231 (372)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEee
Confidence 57999999999999999988762 23443321 1111 0011111123445556666689999999
Q ss_pred cccc
Q psy4538 64 DEID 67 (343)
Q Consensus 64 Deid 67 (343)
.|+-
T Consensus 232 GEiR 235 (372)
T TIGR02525 232 GEIR 235 (372)
T ss_pred CCCC
Confidence 9986
No 401
>KOG0477|consensus
Probab=97.43 E-value=0.00013 Score=69.70 Aligned_cols=27 Identities=33% Similarity=0.555 Sum_probs=23.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~ 27 (343)
+||+|.||||||-+.|++++-....++
T Consensus 485 vLL~GDPGTaKSQFLKY~eK~s~RAV~ 511 (854)
T KOG0477|consen 485 VLLLGDPGTAKSQFLKYAEKTSPRAVF 511 (854)
T ss_pred EEEecCCCccHHHHHHHHHhcCcceeE
Confidence 689999999999999999987765554
No 402
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.43 E-value=0.0092 Score=55.58 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=26.7
Q ss_pred chhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhh
Q psy4538 113 QELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNI 148 (343)
Q Consensus 113 ~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~ 148 (343)
..|..++-.|....|.+.-.+.+.-.+++...+...
T Consensus 197 k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 197 KPLSKALPNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred hhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 456666666655688999989888888888777653
No 403
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.43 E-value=0.00012 Score=60.48 Aligned_cols=31 Identities=39% Similarity=0.673 Sum_probs=27.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISA 31 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~ 31 (343)
|+|.|++|+|||++++.+|+.++.+++..+.
T Consensus 7 I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 7 IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred EEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 5789999999999999999999998876553
No 404
>PRK14528 adenylate kinase; Provisional
Probab=97.42 E-value=0.00012 Score=61.44 Aligned_cols=28 Identities=29% Similarity=0.568 Sum_probs=25.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~ 28 (343)
+++.||||+|||++++.+++.+|.+++.
T Consensus 4 i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 4 IIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 5789999999999999999999987654
No 405
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.42 E-value=0.00012 Score=62.87 Aligned_cols=32 Identities=31% Similarity=0.632 Sum_probs=26.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTL 34 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l 34 (343)
|+++||||+|||++++.+|+.+|...+ +..++
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~i--s~~dl 34 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHI--STGDM 34 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE--ECCcc
Confidence 589999999999999999999997665 44444
No 406
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.41 E-value=0.00068 Score=58.59 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=25.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---C------CcEEEEeccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---K------ATFFCISAST 33 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~------~~~~~v~~~~ 33 (343)
+.|+||||+|||+++..+|... + ..+++++...
T Consensus 22 ~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 22 TEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred EEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 3689999999999999998753 2 5566666643
No 407
>PRK02496 adk adenylate kinase; Provisional
Probab=97.41 E-value=0.00011 Score=61.37 Aligned_cols=28 Identities=25% Similarity=0.568 Sum_probs=24.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~ 28 (343)
+++.||||+|||++++.+++.+|.+.+.
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~ 31 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIS 31 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 5789999999999999999999877653
No 408
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.41 E-value=0.00076 Score=58.02 Aligned_cols=32 Identities=34% Similarity=0.538 Sum_probs=25.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISAS 32 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~ 32 (343)
++++|+||+|||+++..+|.+. |.++++++..
T Consensus 22 ~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 22 TQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 4689999999999999998765 5567777654
No 409
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.41 E-value=0.0016 Score=55.26 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=18.2
Q ss_pred CEEeCCCCchHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAA 20 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~ 20 (343)
++|.||.|+|||++.+.++.
T Consensus 32 ~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 32 LLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EEEECCCCCccHHHHHHHHH
Confidence 47899999999999999983
No 410
>PRK14974 cell division protein FtsY; Provisional
Probab=97.39 E-value=0.0015 Score=59.81 Aligned_cols=32 Identities=25% Similarity=0.219 Sum_probs=24.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISAS 32 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~ 32 (343)
++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4789999999999888888765 4455555543
No 411
>PRK13946 shikimate kinase; Provisional
Probab=97.39 E-value=0.00013 Score=61.10 Aligned_cols=30 Identities=27% Similarity=0.488 Sum_probs=27.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCIS 30 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~ 30 (343)
|+|.|++|||||++++.+|+.+|.+++..+
T Consensus 13 I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 13 VVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 578999999999999999999999987555
No 412
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.36 E-value=0.00089 Score=56.28 Aligned_cols=43 Identities=26% Similarity=0.287 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCC
Q psy4538 45 MVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAST 97 (343)
Q Consensus 45 ~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 97 (343)
..+-.+..+...+|.++++||--+.+ ...+..+++..|..+..
T Consensus 142 qQRVAIARALaM~P~vmLFDEPTSAL----------DPElv~EVL~vm~~LA~ 184 (240)
T COG1126 142 QQRVAIARALAMDPKVMLFDEPTSAL----------DPELVGEVLDVMKDLAE 184 (240)
T ss_pred HHHHHHHHHHcCCCCEEeecCCcccC----------CHHHHHHHHHHHHHHHH
Confidence 34555666777899999999976442 23455666666665543
No 413
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.36 E-value=0.0014 Score=59.09 Aligned_cols=96 Identities=14% Similarity=0.203 Sum_probs=51.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcE-EEEeccccccc-------ccchHHHHHHHHHHHHHhcCCcEEEeccccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATF-FCISASTLTSK-------WYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQ 72 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~-~~v~~~~l~~~-------~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~ 72 (343)
+++||+-|.|||.|.-.+.+.+..+- ..+.-..+... ..|+. .-+..+-.+. ..+..||++||++-=
T Consensus 68 lYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~-~~~~~vLCfDEF~Vt--- 142 (367)
T COG1485 68 LYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADEL-AAETRVLCFDEFEVT--- 142 (367)
T ss_pred EEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHH-HhcCCEEEeeeeeec---
Confidence 57999999999999999999885432 11211111110 00111 0011111111 123459999999731
Q ss_pred CCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCC
Q psy4538 73 RSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRP 112 (343)
Q Consensus 73 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~ 112 (343)
+-...-++..|+..+- ...|++++|+|.+
T Consensus 143 -----DI~DAMiL~rL~~~Lf------~~GV~lvaTSN~~ 171 (367)
T COG1485 143 -----DIADAMILGRLLEALF------ARGVVLVATSNTA 171 (367)
T ss_pred -----ChHHHHHHHHHHHHHH------HCCcEEEEeCCCC
Confidence 1122334445554442 3358889999874
No 414
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.35 E-value=0.0016 Score=56.09 Aligned_cols=22 Identities=27% Similarity=0.582 Sum_probs=19.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+-|.||+|||||||.+.+|...
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 3588999999999999999865
No 415
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.35 E-value=0.00085 Score=55.39 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+.|.||+|+|||++++.++..+
T Consensus 31 ~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 31 VAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 3689999999999999999876
No 416
>PLN02200 adenylate kinase family protein
Probab=97.35 E-value=0.00017 Score=62.71 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=28.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTS 36 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~ 36 (343)
+++.|+||+||||+++.+|+++|.. .+++.++..
T Consensus 46 i~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 46 TFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 4789999999999999999999875 466666643
No 417
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.34 E-value=0.00013 Score=58.90 Aligned_cols=32 Identities=34% Similarity=0.543 Sum_probs=26.1
Q ss_pred EeCCCCchHHHHHHHHHHHcCCcEEEEecccccc
Q psy4538 3 LFGPPGTGKTLIGKCVAAQCKATFFCISASTLTS 36 (343)
Q Consensus 3 l~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~ 36 (343)
|.||||+|||++++.+|+++|.. .++..++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~--~is~~~llr 32 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV--HISVGDLLR 32 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE--EEEHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc--eechHHHHH
Confidence 68999999999999999999865 556655543
No 418
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.34 E-value=0.0039 Score=52.16 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=17.7
Q ss_pred CEEeCCCCchHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVA 19 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la 19 (343)
++|+||.|+|||++.+.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 4799999999999999998
No 419
>PRK13948 shikimate kinase; Provisional
Probab=97.33 E-value=0.00019 Score=59.74 Aligned_cols=30 Identities=30% Similarity=0.320 Sum_probs=27.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCIS 30 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~ 30 (343)
|+|.|.+|+|||++++.+|+.+|.+++..+
T Consensus 13 I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 13 VALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 578999999999999999999999988554
No 420
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.33 E-value=0.00072 Score=62.70 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=20.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+++.|.||||||.+|-.++.++
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHh
Confidence 4789999999999999999988
No 421
>PF12846 AAA_10: AAA-like domain
Probab=97.33 E-value=0.0035 Score=56.39 Aligned_cols=69 Identities=26% Similarity=0.320 Sum_probs=52.8
Q ss_pred ccCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCccccc-----HHHHHhhhceEec
Q psy4538 222 VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELD-----EAARRRLVKRLYI 296 (343)
Q Consensus 222 ~~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD-----~allRR~d~~i~~ 296 (343)
...|+++|+||+-.+.... .....+.+++.+.-.+. +.++.+|..|..|+ ++++.-...++.+
T Consensus 218 ~~~~~~i~iDEa~~~~~~~------~~~~~~~~~~~~~Rk~g------~~~~l~tQ~~~~l~~~~~~~~i~~n~~~~i~~ 285 (304)
T PF12846_consen 218 RGRPKIIVIDEAHNFLSNP------SGAEFLDELLREGRKYG------VGLILATQSPSDLPKSPIEDAILANCNTKIIF 285 (304)
T ss_pred CCceEEEEeCCcccccccc------chhhhhhHHHHHHHhcC------CEEEEeeCCHHHHhccchHHHHHHhCCcEEEe
Confidence 3578999999997777652 33345666666644432 68999999999999 8888889999999
Q ss_pred cCCCCC
Q psy4538 297 PLPDEQ 302 (343)
Q Consensus 297 ~~P~~~ 302 (343)
..++.+
T Consensus 286 ~~~~~~ 291 (304)
T PF12846_consen 286 RLEDSD 291 (304)
T ss_pred cCChHH
Confidence 988764
No 422
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.32 E-value=0.00036 Score=63.86 Aligned_cols=67 Identities=19% Similarity=0.300 Sum_probs=43.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC--cEEEE-ecccccc-----------cc--cchHHHHHHHHHHHHHhcCCcEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA--TFFCI-SASTLTS-----------KW--YGEGEKMVRALFAVASVHQPSIIFID 64 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~--~~~~v-~~~~l~~-----------~~--~~~~~~~l~~~~~~~~~~~p~vl~iD 64 (343)
++++|++|+||||+++++...+.. .++.+ +..++.- .. .+...-....++..+....|..+++.
T Consensus 163 ili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~IivG 242 (332)
T PRK13900 163 IIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRIIVG 242 (332)
T ss_pred EEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeEEEE
Confidence 589999999999999999998853 22222 1111110 00 01112235667777778899999999
Q ss_pred ccc
Q psy4538 65 EID 67 (343)
Q Consensus 65 eid 67 (343)
|+-
T Consensus 243 EiR 245 (332)
T PRK13900 243 ELR 245 (332)
T ss_pred ecC
Confidence 986
No 423
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.32 E-value=0.00034 Score=63.09 Aligned_cols=67 Identities=21% Similarity=0.326 Sum_probs=43.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC-----CcEEEEec-cccc-------ccccchHHHHHHHHHHHHHhcCCcEEEecccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK-----ATFFCISA-STLT-------SKWYGEGEKMVRALFAVASVHQPSIIFIDEID 67 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~-----~~~~~v~~-~~l~-------~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid 67 (343)
++++||+|+||||+++++++.+. ..++.+.- .++. .-........+..++..+.+..|..+++.|+-
T Consensus 135 ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGEiR 214 (299)
T TIGR02782 135 ILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGEVR 214 (299)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEeccC
Confidence 58999999999999999998862 22332211 1111 00011111145667777777899999999986
No 424
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.32 E-value=0.00024 Score=49.10 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=20.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+.+.|+||+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999986
No 425
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.31 E-value=0.00013 Score=56.90 Aligned_cols=22 Identities=45% Similarity=0.594 Sum_probs=20.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
|+|.|+|||||||+++.+++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999997
No 426
>PRK06696 uridine kinase; Validated
Probab=97.31 E-value=0.00022 Score=61.60 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=29.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLT 35 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~ 35 (343)
|.+.|++|+||||+|+.+++.+ |.+++.++..++.
T Consensus 25 I~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 25 VAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 4689999999999999999998 6677777766664
No 427
>PRK05973 replicative DNA helicase; Provisional
Probab=97.30 E-value=0.0019 Score=55.93 Aligned_cols=32 Identities=34% Similarity=0.448 Sum_probs=24.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISAS 32 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~ 32 (343)
++|.|+||+|||+++-.++.+. |.++++++..
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 4789999999999998886644 6666666653
No 428
>PRK14527 adenylate kinase; Provisional
Probab=97.30 E-value=0.00014 Score=61.23 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=24.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~ 27 (343)
++++||||+||||+++.++++++...+
T Consensus 9 i~i~G~pGsGKsT~a~~La~~~~~~~i 35 (191)
T PRK14527 9 VIFLGPPGAGKGTQAERLAQELGLKKL 35 (191)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 579999999999999999999987654
No 429
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.30 E-value=0.00037 Score=58.02 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=25.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc---EEEEecccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT---FFCISASTL 34 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~---~~~v~~~~l 34 (343)
++|+|++|+|||++++.+...+... ++.+++...
T Consensus 27 ~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 27 LLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5799999999999999988877433 677776655
No 430
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.30 E-value=0.003 Score=59.45 Aligned_cols=33 Identities=27% Similarity=0.262 Sum_probs=26.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISAST 33 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~ 33 (343)
++|+|++|+||||++..+|..+ |..+..+++..
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~ 138 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADT 138 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 4799999999999999998876 66666666644
No 431
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.28 E-value=0.0018 Score=54.68 Aligned_cols=32 Identities=41% Similarity=0.429 Sum_probs=22.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISAS 32 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~ 32 (343)
++|.||+|+||||.+-.+|..+ +..+..+++.
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D 38 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISAD 38 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEES
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCC
Confidence 4789999999999888887765 4444444443
No 432
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.26 E-value=0.0029 Score=55.22 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=25.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----CCcEEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----KATFFCISA 31 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----~~~~~~v~~ 31 (343)
++|.|+||+|||+++..++... +.++++++.
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 4789999999999988886654 777777775
No 433
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.26 E-value=0.0029 Score=54.76 Aligned_cols=91 Identities=21% Similarity=0.337 Sum_probs=52.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----CCcEEEEeccccccc--------------------------c-------cchHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----KATFFCISASTLTSK--------------------------W-------YGEGE 43 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----~~~~~~v~~~~l~~~--------------------------~-------~~~~~ 43 (343)
+|+.||||+|||+++..++.+. |-+.++++..+-... . .....
T Consensus 22 ~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~~~~~~ 101 (226)
T PF06745_consen 22 VLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWSPNDLE 101 (226)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-TSCCHH
T ss_pred EEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccccccCHH
Confidence 4899999999999999876433 777777765332100 0 01123
Q ss_pred HHHHHHHHHHHhcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhcc
Q psy4538 44 KMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDG 94 (343)
Q Consensus 44 ~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~ 94 (343)
..+..+........+.+++||-+..+....+. ....+.+..+...+..
T Consensus 102 ~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~~---~~~r~~l~~l~~~l~~ 149 (226)
T PF06745_consen 102 ELLSKIREAIEELKPDRVVIDSLSALLLYDDP---EELRRFLRALIKFLKS 149 (226)
T ss_dssp HHHHHHHHHHHHHTSSEEEEETHHHHTTSSSG---GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECHHHHhhcCCH---HHHHHHHHHHHHHHHH
Confidence 33444444445566899999999988222211 2234455555555543
No 434
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.26 E-value=0.00059 Score=53.38 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=18.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
++++||+|+|||+++..++..+
T Consensus 3 ~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 3 VLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred EEEECCCCCchhHHHHHHHHHH
Confidence 4799999999999888877766
No 435
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.26 E-value=0.00048 Score=62.90 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=18.7
Q ss_pred EEeCCCCchHHHHHHHHHHHc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l 22 (343)
.|.||+||||||+.|.||.--
T Consensus 35 ~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 35 TLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999844
No 436
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.26 E-value=0.0022 Score=63.88 Aligned_cols=152 Identities=18% Similarity=0.166 Sum_probs=82.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHc--CCcEEEEeccccccc--------------c---cch-------------HHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC--KATFFCISASTLTSK--------------W---YGE-------------GEKMVRA 48 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l--~~~~~~v~~~~l~~~--------------~---~~~-------------~~~~l~~ 48 (343)
++|+-|.|.||||++-.++... +..+.++++.+-.+. + .++ ....+..
T Consensus 40 ~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~ 119 (894)
T COG2909 40 ILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSS 119 (894)
T ss_pred EEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHH
Confidence 5789999999999999998643 445555544332111 0 011 1123344
Q ss_pred HHHHH-HhcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccc-eE
Q psy4538 49 LFAVA-SVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLV-KR 126 (343)
Q Consensus 49 ~~~~~-~~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~-~~ 126 (343)
++.+. ....|..|+|||.+.+-. +........|++.. ..++.+|.+|...-.+.-+=. |.. ..
T Consensus 120 L~~Ela~~~~pl~LVlDDyHli~~-------~~l~~~l~fLl~~~-------P~~l~lvv~SR~rP~l~la~l-Rlr~~l 184 (894)
T COG2909 120 LLNELASYEGPLYLVLDDYHLISD-------PALHEALRFLLKHA-------PENLTLVVTSRSRPQLGLARL-RLRDEL 184 (894)
T ss_pred HHHHHHhhcCceEEEeccccccCc-------ccHHHHHHHHHHhC-------CCCeEEEEEeccCCCCcccce-eehhhH
Confidence 44433 446799999999997731 22233333333322 445666666643222211101 111 11
Q ss_pred EEEcC----CCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHH
Q psy4538 127 LYIPL----PDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGA 170 (343)
Q Consensus 127 i~~~~----P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~ 170 (343)
+++.. -+.+|-.+++.... +..++..++..|...+.|...+
T Consensus 185 lEi~~~~Lrf~~eE~~~fl~~~~---~l~Ld~~~~~~L~~~teGW~~a 229 (894)
T COG2909 185 LEIGSEELRFDTEEAAAFLNDRG---SLPLDAADLKALYDRTEGWAAA 229 (894)
T ss_pred HhcChHhhcCChHHHHHHHHHcC---CCCCChHHHHHHHhhcccHHHH
Confidence 22221 35566666655432 2567777899999999987553
No 437
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.26 E-value=0.00026 Score=59.80 Aligned_cols=106 Identities=21% Similarity=0.321 Sum_probs=56.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
++|.|+.|+|||+..+.++.+ ++.-+.... ........+ ...-++.+||++.+..+ .
T Consensus 55 lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~------~~kd~~~~l------~~~~iveldEl~~~~k~-------~ 111 (198)
T PF05272_consen 55 LVLVGKQGIGKSTFFRKLGPE----YFSDSINDF------DDKDFLEQL------QGKWIVELDELDGLSKK-------D 111 (198)
T ss_pred eeEecCCcccHHHHHHHHhHH----hccCccccC------CCcHHHHHH------HHhHheeHHHHhhcchh-------h
Confidence 478999999999999999765 221111111 111111111 11247889999987421 1
Q ss_pred HHHHHHHHHHh-hccCC-------CCCCCcEEEEEecCCCchhhH-HHHhccceEEEEcC
Q psy4538 81 SRRLKTEFLIS-LDGAS-------TLDDDLVLVIGATNRPQELDE-AARRRLVKRLYIPL 131 (343)
Q Consensus 81 ~~~~~~~ll~~-l~~~~-------~~~~~~v~vi~~tn~~~~l~~-~l~~rf~~~i~~~~ 131 (343)
. ..++.++.. .+... ..-....++|||||..+-+.. .--|||- .+++..
T Consensus 112 ~-~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~-~v~v~~ 169 (198)
T PF05272_consen 112 V-EALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFW-PVEVSK 169 (198)
T ss_pred H-HHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEE-EEEEcC
Confidence 1 122222221 11111 112345788999999876644 3445775 555554
No 438
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.25 E-value=0.00042 Score=58.09 Aligned_cols=67 Identities=28% Similarity=0.448 Sum_probs=41.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC--cEEEEec-ccccc---cc----------cchHHHHHHHHHHHHHhcCCcEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA--TFFCISA-STLTS---KW----------YGEGEKMVRALFAVASVHQPSIIFID 64 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~--~~~~v~~-~~l~~---~~----------~~~~~~~l~~~~~~~~~~~p~vl~iD 64 (343)
++|.||+|+||||++++++..+.. ..+.+.. .++.. .+ .+........++..+....|.++++.
T Consensus 28 i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~ig 107 (186)
T cd01130 28 ILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRIIVG 107 (186)
T ss_pred EEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEEEE
Confidence 479999999999999999987732 2222211 11100 00 00111234555666666789999999
Q ss_pred ccc
Q psy4538 65 EID 67 (343)
Q Consensus 65 eid 67 (343)
|+-
T Consensus 108 Eir 110 (186)
T cd01130 108 EVR 110 (186)
T ss_pred ccC
Confidence 985
No 439
>PRK04040 adenylate kinase; Provisional
Probab=97.25 E-value=0.00024 Score=59.63 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=22.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHc--CCcE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC--KATF 26 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l--~~~~ 26 (343)
++++|+|||||||+++.+++.+ +..+
T Consensus 5 i~v~G~pG~GKtt~~~~l~~~l~~~~~~ 32 (188)
T PRK04040 5 VVVTGVPGVGKTTVLNKALEKLKEDYKI 32 (188)
T ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCeE
Confidence 4789999999999999999999 5544
No 440
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.25 E-value=0.0036 Score=54.59 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=24.2
Q ss_pred CEEeCCCCchHHHHHHHHHHH---cCCcEEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ---CKATFFCISAS 32 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~---l~~~~~~v~~~ 32 (343)
+|++||||+|||+++..++.+ -|-+.++++..
T Consensus 24 ~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 24 VLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 589999999999999877554 35566666543
No 441
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.25 E-value=0.0021 Score=53.87 Aligned_cols=112 Identities=23% Similarity=0.347 Sum_probs=66.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccccc--------------------------------ccc-cchHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLT--------------------------------SKW-YGEGEK 44 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~--------------------------------~~~-~~~~~~ 44 (343)
+++-|+.|||||.+.+.++.-. +.....++...-. ..| .....+
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~~~~~~~ 110 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWGRRSARK 110 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccccChHHHHH
Confidence 4788999999999999998744 3344443321100 000 112344
Q ss_pred HHHHHHHHHHhcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhcc
Q psy4538 45 MVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRL 123 (343)
Q Consensus 45 ~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf 123 (343)
.+..+....+.....|++||-+..++... ......+++..+..+.. .++++++ |-+|..+++++..|+
T Consensus 111 ~L~~l~~~~k~~~~dViIIDSls~~~~~~-------~~~~vl~fm~~~r~l~d--~gKvIil--Tvhp~~l~e~~~~ri 178 (235)
T COG2874 111 LLDLLLEFIKRWEKDVIIIDSLSAFATYD-------SEDAVLNFMTFLRKLSD--LGKVIIL--TVHPSALDEDVLTRI 178 (235)
T ss_pred HHHHHHhhHHhhcCCEEEEecccHHhhcc-------cHHHHHHHHHHHHHHHh--CCCEEEE--EeChhhcCHHHHHHH
Confidence 55666666666778899999988775432 22334455555555543 3444443 666778887766554
No 442
>PRK04182 cytidylate kinase; Provisional
Probab=97.25 E-value=0.00026 Score=58.79 Aligned_cols=28 Identities=32% Similarity=0.602 Sum_probs=25.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~ 28 (343)
|+|.|++|||||++++.+|+.+|.+++.
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 5789999999999999999999988764
No 443
>PRK01184 hypothetical protein; Provisional
Probab=97.25 E-value=0.00025 Score=59.34 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=23.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI 29 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v 29 (343)
|+|+||||+||||+++ +++++|.+++..
T Consensus 4 i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 4 IGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 4689999999999987 788999877544
No 444
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.24 E-value=0.0033 Score=52.10 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=18.0
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
+.|.||+|+|||||.+.+...
T Consensus 24 ~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 24 VVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred EEEECCCCCCHHHHHHHHhhc
Confidence 358999999999999999643
No 445
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.24 E-value=0.0034 Score=52.11 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+.|.||+|+|||+|++.++...
T Consensus 31 ~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 31 IALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 3589999999999999999876
No 446
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.24 E-value=0.011 Score=51.69 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=18.2
Q ss_pred EEeCCCCchHHHHHHHHHHH
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~ 21 (343)
+|+||||+|||+++..+|..
T Consensus 5 ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 5 ALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred EEEcCCCCCHHHHHHHHHHH
Confidence 78999999999999999864
No 447
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.23 E-value=0.00027 Score=58.17 Aligned_cols=28 Identities=36% Similarity=0.662 Sum_probs=25.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~ 28 (343)
|.++|++|+|||++++.+++.+|.+++.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 5789999999999999999999988754
No 448
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.23 E-value=0.0014 Score=54.19 Aligned_cols=33 Identities=33% Similarity=0.396 Sum_probs=26.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISAST 33 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~ 33 (343)
+++.|+||+|||+++..++..+ |..+..+++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 4789999999999999998875 56666666653
No 449
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.23 E-value=0.0027 Score=52.52 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=19.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+.|.||+|+|||+|++.++..+
T Consensus 29 ~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 29 YGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999865
No 450
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.22 E-value=0.0022 Score=57.08 Aligned_cols=31 Identities=29% Similarity=0.208 Sum_probs=24.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----CCcEEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----KATFFCISA 31 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----~~~~~~v~~ 31 (343)
++|.|+||+|||+++..++..+ |.++++++.
T Consensus 33 ~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 33 IILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 4789999999999999887654 666776665
No 451
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.21 E-value=0.0004 Score=61.88 Aligned_cols=68 Identities=26% Similarity=0.376 Sum_probs=41.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc---EEEEe-ccccccc------c-cchHHHHHHHHHHHHHhcCCcEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT---FFCIS-ASTLTSK------W-YGEGEKMVRALFAVASVHQPSIIFIDEIDS 68 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~---~~~v~-~~~l~~~------~-~~~~~~~l~~~~~~~~~~~p~vl~iDeid~ 68 (343)
+++.||+|+||||+++++...+... ++.+. ..++.-. . ..........++..+....|.++++.|+-.
T Consensus 130 ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 130 ILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp EEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred EEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 5899999999999999999988433 33332 1111100 0 011222355666667778899999999974
No 452
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.20 E-value=0.00027 Score=57.87 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=20.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~ 27 (343)
|.|+|++|||||||++.+++. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 579999999999999999999 87766
No 453
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.20 E-value=0.0034 Score=51.87 Aligned_cols=22 Identities=23% Similarity=0.635 Sum_probs=19.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+.|.||+|+|||+|++.++...
T Consensus 31 ~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 31 LAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 3589999999999999999875
No 454
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.18 E-value=0.0026 Score=53.50 Aligned_cols=20 Identities=35% Similarity=0.773 Sum_probs=17.3
Q ss_pred EeCCCCchHHHHHHHHHHHc
Q psy4538 3 LFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 3 l~Gp~GtGKT~la~~la~~l 22 (343)
|.||+||||||+.|.+=...
T Consensus 38 lIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 38 LIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred EECCCCcCHHHHHHHHHhhc
Confidence 78999999999999986543
No 455
>PRK14526 adenylate kinase; Provisional
Probab=97.17 E-value=0.00035 Score=59.70 Aligned_cols=32 Identities=34% Similarity=0.658 Sum_probs=26.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTL 34 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l 34 (343)
++|.||||+||||+++.+|..++..+ ++..++
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~--is~G~l 34 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYH--ISTGDL 34 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCce--eecChH
Confidence 57899999999999999999998765 444444
No 456
>PLN02840 tRNA dimethylallyltransferase
Probab=97.17 E-value=0.00051 Score=64.15 Aligned_cols=34 Identities=21% Similarity=0.426 Sum_probs=29.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTL 34 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l 34 (343)
++|.||+|+|||+++..+|++++..++..+...+
T Consensus 24 i~I~GptgsGKTtla~~La~~~~~~iis~Ds~qv 57 (421)
T PLN02840 24 IVISGPTGAGKSRLALELAKRLNGEIISADSVQV 57 (421)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCeEeccccce
Confidence 4689999999999999999999988877766444
No 457
>PRK13764 ATPase; Provisional
Probab=97.17 E-value=0.00049 Score=67.35 Aligned_cols=67 Identities=21% Similarity=0.328 Sum_probs=38.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC---cEEEE-ecccc-----cccccchHHHHHHHHHHHHHhcCCcEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA---TFFCI-SASTL-----TSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDS 68 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~---~~~~v-~~~~l-----~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~ 68 (343)
+|++||+||||||++++++..+.. .+..+ ++.++ ...+.. ...........+....|.++++||+-.
T Consensus 260 ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 260 ILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCCC
Confidence 589999999999999999988742 22222 11111 111110 000111222222456799999999863
No 458
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.16 E-value=0.0042 Score=54.93 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=24.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISAS 32 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~ 32 (343)
++++||||+|||+++..++... |-+.++++..
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 4789999999999999886643 5566666543
No 459
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.14 E-value=0.0027 Score=53.37 Aligned_cols=72 Identities=28% Similarity=0.363 Sum_probs=39.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-------------CCcEEEEecccccc-----------cccc-h--------------
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-------------KATFFCISASTLTS-----------KWYG-E-------------- 41 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-------------~~~~~~v~~~~l~~-----------~~~~-~-------------- 41 (343)
++++||+|+|||+++..++..+ +.++++++...-.. .+.. .
T Consensus 35 ~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (193)
T PF13481_consen 35 TLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCIR 114 (193)
T ss_dssp EEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE-
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccce
Confidence 3789999999999999987755 23566666543210 0000 0
Q ss_pred ----------HHHHHHHHHHHHHh-cCCcEEEeccccccccc
Q psy4538 42 ----------GEKMVRALFAVASV-HQPSIIFIDEIDSLLCQ 72 (343)
Q Consensus 42 ----------~~~~l~~~~~~~~~-~~p~vl~iDeid~l~~~ 72 (343)
....+..+.+.... ..+.+++||.+..+...
T Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 115 LFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp --TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 01223344444454 56899999999999866
No 460
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.14 E-value=0.0056 Score=51.92 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=17.7
Q ss_pred CEEeCCCCchHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVA 19 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la 19 (343)
++|.||.|+|||++.+.++
T Consensus 31 ~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 31 LVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEECCCCCChHHHHHHHH
Confidence 4799999999999999998
No 461
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.13 E-value=0.0012 Score=57.65 Aligned_cols=21 Identities=38% Similarity=0.738 Sum_probs=19.4
Q ss_pred EEeCCCCchHHHHHHHHHHHc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l 22 (343)
.|.||.|||||||.|+++..+
T Consensus 32 ~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 32 GILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred EEECCCCCCHHHHHHHHhccC
Confidence 588999999999999999976
No 462
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.13 E-value=0.0027 Score=63.87 Aligned_cols=71 Identities=21% Similarity=0.273 Sum_probs=44.3
Q ss_pred CEEeCCCCchHHHHHHHHHHH---cCCcEEEEecccccc----------------cccchHHHHHHHHHHHHHhcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ---CKATFFCISASTLTS----------------KWYGEGEKMVRALFAVASVHQPSII 61 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~---l~~~~~~v~~~~l~~----------------~~~~~~~~~l~~~~~~~~~~~p~vl 61 (343)
++++||+|+|||+++..++.. .|...++++...-.. ......+..+..+-.......+.+|
T Consensus 63 teI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~LV 142 (790)
T PRK09519 63 IEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIV 142 (790)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCCeEE
Confidence 369999999999999776543 356666666544221 0011123333333333344578999
Q ss_pred Eecccccccc
Q psy4538 62 FIDEIDSLLC 71 (343)
Q Consensus 62 ~iDeid~l~~ 71 (343)
+||-+..+.+
T Consensus 143 VIDSI~aL~~ 152 (790)
T PRK09519 143 VIDSVAALVP 152 (790)
T ss_pred EEcchhhhcc
Confidence 9999999885
No 463
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.13 E-value=0.0084 Score=48.60 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=21.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFC 28 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~ 28 (343)
|.+|+++|.|||++|-.+|-.. |..+..
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~ 35 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGV 35 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 4688999999999999887654 544444
No 464
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.13 E-value=0.00038 Score=54.59 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT 25 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~ 25 (343)
++|.|+.|+|||++++.+++.+|..
T Consensus 25 i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 25 VLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 4799999999999999999999864
No 465
>PF13479 AAA_24: AAA domain
Probab=97.13 E-value=0.00083 Score=57.60 Aligned_cols=64 Identities=23% Similarity=0.255 Sum_probs=36.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccc---ccc------ccchHHHHHHHHHHHH--HhcCCcEEEecccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTL---TSK------WYGEGEKMVRALFAVA--SVHQPSIIFIDEIDSL 69 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l---~~~------~~~~~~~~l~~~~~~~--~~~~p~vl~iDeid~l 69 (343)
++|||+||+|||+++..+ +. .+.+++..- ... ..-.+-..+...+... .......|+||.++.+
T Consensus 6 ~lIyG~~G~GKTt~a~~~----~k-~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 6 ILIYGPPGSGKTTLAASL----PK-PLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISWL 80 (213)
T ss_pred EEEECCCCCCHHHHHHhC----CC-eEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHH
Confidence 589999999999999888 32 333443222 000 0011222333333332 2345679999988775
No 466
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.12 E-value=0.00039 Score=62.92 Aligned_cols=29 Identities=38% Similarity=0.548 Sum_probs=23.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-CCcEEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-KATFFCISA 31 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-~~~~~~v~~ 31 (343)
+++.|+|||||||+++.+++.+ +. ..++.
T Consensus 5 iil~G~pGSGKSTla~~L~~~~~~~--~~l~~ 34 (300)
T PHA02530 5 ILTVGVPGSGKSTWAREFAAKNPKA--VNVNR 34 (300)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCC--EEEec
Confidence 4789999999999999999998 44 44444
No 467
>PLN02674 adenylate kinase
Probab=97.11 E-value=0.00041 Score=60.41 Aligned_cols=33 Identities=21% Similarity=0.507 Sum_probs=27.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLT 35 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~ 35 (343)
|+|.||||+||+|.++.+|+.+|... ++..++.
T Consensus 34 i~l~G~PGsGKgT~a~~La~~~~~~h--is~Gdll 66 (244)
T PLN02674 34 LILIGPPGSGKGTQSPIIKDEYCLCH--LATGDML 66 (244)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcE--EchhHHH
Confidence 57899999999999999999998654 4555554
No 468
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.11 E-value=0.00077 Score=61.23 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=19.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+.|.||+||||||+.|.+|...
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 3588999999999999999865
No 469
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.10 E-value=0.00066 Score=61.69 Aligned_cols=67 Identities=19% Similarity=0.281 Sum_probs=41.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC--cEEEEe-cccccc----------cc--cchHHHHHHHHHHHHHhcCCcEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA--TFFCIS-ASTLTS----------KW--YGEGEKMVRALFAVASVHQPSIIFIDE 65 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~--~~~~v~-~~~l~~----------~~--~~~~~~~l~~~~~~~~~~~p~vl~iDe 65 (343)
+++.||+|+||||++++++..+.. ..+.+. ..++.. .. .+...-....++..+....|.++++||
T Consensus 147 ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii~gE 226 (308)
T TIGR02788 147 IIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRIILGE 226 (308)
T ss_pred EEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeEEEec
Confidence 579999999999999999987732 222221 111100 00 011112345566666678899999999
Q ss_pred cc
Q psy4538 66 ID 67 (343)
Q Consensus 66 id 67 (343)
+-
T Consensus 227 ~r 228 (308)
T TIGR02788 227 LR 228 (308)
T ss_pred cC
Confidence 86
No 470
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.10 E-value=0.00058 Score=62.64 Aligned_cols=67 Identities=25% Similarity=0.436 Sum_probs=42.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC--cEEEEe-cccccc--------cc----cchHHHHHHHHHHHHHhcCCcEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA--TFFCIS-ASTLTS--------KW----YGEGEKMVRALFAVASVHQPSIIFIDE 65 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~--~~~~v~-~~~l~~--------~~----~~~~~~~l~~~~~~~~~~~p~vl~iDe 65 (343)
+++.||+|+||||++++++..+.. ..+.+. ..++.- .+ .+...-....++..+.+..|..+++.|
T Consensus 165 ilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~IivGE 244 (344)
T PRK13851 165 MLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRILLGE 244 (344)
T ss_pred EEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeEEEEe
Confidence 589999999999999999998743 222221 111100 00 011122345667777778999999999
Q ss_pred cc
Q psy4538 66 ID 67 (343)
Q Consensus 66 id 67 (343)
+-
T Consensus 245 iR 246 (344)
T PRK13851 245 MR 246 (344)
T ss_pred eC
Confidence 85
No 471
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.10 E-value=0.0016 Score=55.28 Aligned_cols=38 Identities=21% Similarity=0.432 Sum_probs=29.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-CCcEEEEecccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-KATFFCISASTLTSKW 38 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-~~~~~~v~~~~l~~~~ 38 (343)
+++.|+||+|||+++..+...+ +..++.++...+....
T Consensus 18 ~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 18 IIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH 56 (199)
T ss_dssp EEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS
T ss_pred EEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc
Confidence 4688999999999999999998 7778889988876544
No 472
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.10 E-value=0.0014 Score=60.66 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
++|.||+|+|||++++.+++.+.
T Consensus 171 ~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 171 GLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred EEEECCCCCChhHHHHHHHHhhc
Confidence 47899999999999999999864
No 473
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.09 E-value=0.00088 Score=59.38 Aligned_cols=67 Identities=19% Similarity=0.257 Sum_probs=42.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC---CcEEEEe-ccccccc-----c-cchHHHHHHHHHHHHHhcCCcEEEecccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK---ATFFCIS-ASTLTSK-----W-YGEGEKMVRALFAVASVHQPSIIFIDEID 67 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~---~~~~~v~-~~~l~~~-----~-~~~~~~~l~~~~~~~~~~~p~vl~iDeid 67 (343)
+++.||+|+||||+++++...+. ..++.+. ..++.-. . ...........+..+....|.+++++|+.
T Consensus 83 ilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 83 ILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred EEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 57999999999999999987774 2333331 1111100 0 01111234555666667899999999996
No 474
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.08 E-value=0.0051 Score=56.97 Aligned_cols=32 Identities=41% Similarity=0.416 Sum_probs=25.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISAS 32 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~ 32 (343)
++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 244 I~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD 278 (436)
T PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 278 (436)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 4799999999999999999876 4445555553
No 475
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.08 E-value=0.01 Score=56.19 Aligned_cols=200 Identities=17% Similarity=0.180 Sum_probs=93.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----CCcEEEEecccccccc-------------------cch-HHHHHHHHHHHHHhc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----KATFFCISASTLTSKW-------------------YGE-GEKMVRALFAVASVH 56 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----~~~~~~v~~~~l~~~~-------------------~~~-~~~~l~~~~~~~~~~ 56 (343)
+++.|++|+||||++..+|..+ |..+..+++....... .+. ........+..+...
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~ 181 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKEN 181 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhc
Confidence 4789999999999988887663 5667777765432210 000 112233444444445
Q ss_pred CCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhh--HHHHhccc-eEEEEcCCC
Q psy4538 57 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELD--EAARRRLV-KRLYIPLPD 133 (343)
Q Consensus 57 ~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~--~~l~~rf~-~~i~~~~P~ 133 (343)
...++++|=...+. .+......+..+...+ . +...++|+-++...+.+. ..+..++. .-+-+...+
T Consensus 182 ~~DvVIIDTaGr~~------~d~~l~~eL~~i~~~~----~-p~e~lLVvda~tgq~~~~~a~~f~~~v~i~giIlTKlD 250 (428)
T TIGR00959 182 GFDVVIVDTAGRLQ------IDEELMEELAAIKEIL----N-PDEILLVVDAMTGQDAVNTAKTFNERLGLTGVVLTKLD 250 (428)
T ss_pred CCCEEEEeCCCccc------cCHHHHHHHHHHHHhh----C-CceEEEEEeccchHHHHHHHHHHHhhCCCCEEEEeCcc
Confidence 56788888554331 0111111122222211 1 122233443332212221 22222222 134455555
Q ss_pred HHHHHHHHHHHHhhhCC------------CCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccC
Q psy4538 134 EQARCEIVTKLLRNITN------------SLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPIS 201 (343)
Q Consensus 134 ~~er~~il~~~l~~~~~------------~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~ 201 (343)
...+.-.+.......+. .+.+...+.++.+.-| .+|+..+++.+...--................+
T Consensus 251 ~~~~~G~~lsi~~~~~~PI~fi~~Ge~i~dl~~f~p~~~~~~iLg--~gD~~~l~e~~~~~~~~~~~~~~~~~~~~~~f~ 328 (428)
T TIGR00959 251 GDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILG--MGDILSLVEKAQEVVDEEEAKKLAEKMKKGQFD 328 (428)
T ss_pred CcccccHHHHHHHHHCcCEEEEeCCCChhhCccCCHHHHHHHHhC--CCChHHHHHHHHHhhCHHHHHHHHHHHHhCCCC
Confidence 44444333333322111 1222345566666644 478888888764321111000001112234578
Q ss_pred hhHHHHHHHhcC
Q psy4538 202 IDDFRDALKTVR 213 (343)
Q Consensus 202 ~~d~~~a~~~~~ 213 (343)
.+||.+.++.+.
T Consensus 329 l~d~~~q~~~~~ 340 (428)
T TIGR00959 329 LEDFLEQLRQIK 340 (428)
T ss_pred HHHHHHHHHHHH
Confidence 899988877765
No 476
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.07 E-value=0.0015 Score=55.86 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=18.7
Q ss_pred EEeCCCCchHHHHHHHHHHHc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l 22 (343)
-|.|++||||||++++++...
T Consensus 37 givGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 37 GIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred EEEcCCCCCHHHHHHHHhccc
Confidence 378999999999999998755
No 477
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.07 E-value=0.0016 Score=50.26 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=19.6
Q ss_pred EEeCCCCchHHHHHHHHHHHc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l 22 (343)
-|+|++|||||++++.+|+.+
T Consensus 57 SfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 57 SFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred EeecCCCCcHHHHHHHHHHHH
Confidence 489999999999999999986
No 478
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.07 E-value=0.0007 Score=55.58 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=20.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
++|.||+|+||||+++.+-+..
T Consensus 7 ~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 7 IVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 4689999999999999998877
No 479
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.07 E-value=0.0025 Score=52.53 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=19.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+++.||+|+||||+.|.+..+.
T Consensus 31 ~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 31 VFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred EEEECCCCCCHHHHHHHHHhhh
Confidence 3689999999999999998876
No 480
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.07 E-value=0.00093 Score=60.66 Aligned_cols=67 Identities=18% Similarity=0.299 Sum_probs=42.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC-----CcEEEEe-ccccccc------ccchHHHHHHHHHHHHHhcCCcEEEecccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK-----ATFFCIS-ASTLTSK------WYGEGEKMVRALFAVASVHQPSIIFIDEID 67 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~-----~~~~~v~-~~~l~~~------~~~~~~~~l~~~~~~~~~~~p~vl~iDeid 67 (343)
++++|++|+||||++++++..+. ..++.+. ..++... ......-....++..+.+..|..+++.|+-
T Consensus 147 ilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEiR 225 (323)
T PRK13833 147 IVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEVR 225 (323)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeecC
Confidence 58999999999999999998762 2333221 1121100 000111235566677777899999999985
No 481
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.05 E-value=0.00045 Score=57.89 Aligned_cols=27 Identities=26% Similarity=0.536 Sum_probs=23.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~ 27 (343)
+.|.||+|+||||+++.++...+..++
T Consensus 5 i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 5 IWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 468999999999999999998876543
No 482
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.05 E-value=0.00058 Score=57.69 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=23.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATF 26 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~ 26 (343)
++++|+||+|||++++.++.+++..+
T Consensus 6 i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 6 HFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 57899999999999999999998754
No 483
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.05 E-value=0.0018 Score=52.66 Aligned_cols=35 Identities=17% Similarity=0.382 Sum_probs=30.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLT 35 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~ 35 (343)
|.|+|.+|+||||+|.++.+.+ |...+.++...+.
T Consensus 26 iW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR 63 (197)
T COG0529 26 IWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR 63 (197)
T ss_pred EEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh
Confidence 3589999999999999999877 8888888887654
No 484
>KOG3928|consensus
Probab=97.05 E-value=0.028 Score=51.79 Aligned_cols=51 Identities=10% Similarity=0.037 Sum_probs=36.6
Q ss_pred EEEEcCCCHHHHHHHHHHHHhhhCC---CCChhhHHHHHHHCCCCCHHHHHHHHH
Q psy4538 126 RLYIPLPDEQARCEIVTKLLRNITN---SLTVDDIEEVGRMTTDFSGADMASLCR 177 (343)
Q Consensus 126 ~i~~~~P~~~er~~il~~~l~~~~~---~~~~~~~~~la~~t~g~s~~dl~~l~~ 177 (343)
.|+++.++.+|-..++..++.+.-. ...++....+--.+ +.+++.++.+|.
T Consensus 405 pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lca 458 (461)
T KOG3928|consen 405 PIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLCA 458 (461)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHHH
Confidence 5889999999999999988876321 22345566665555 578888888774
No 485
>KOG0058|consensus
Probab=97.04 E-value=0.0021 Score=63.06 Aligned_cols=40 Identities=30% Similarity=0.355 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhcCCcEEEecccccccccCCCCchhHHHHHHHHHHH
Q psy4538 44 KMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLI 90 (343)
Q Consensus 44 ~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~ 90 (343)
++.+-.+.+|-..+|+||+|||+-+.+ +..++.++++.+.
T Consensus 609 QKQRIAIARALlr~P~VLILDEATSAL-------DaeSE~lVq~aL~ 648 (716)
T KOG0058|consen 609 QKQRIAIARALLRNPRVLILDEATSAL-------DAESEYLVQEALD 648 (716)
T ss_pred HHHHHHHHHHHhcCCCEEEEechhhhc-------chhhHHHHHHHHH
Confidence 445566677777899999999997654 2344455555553
No 486
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.04 E-value=0.0081 Score=51.09 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=17.7
Q ss_pred CEEeCCCCchHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAA 20 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~ 20 (343)
++|.||+|+|||++.+.++.
T Consensus 32 ~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 32 HIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999863
No 487
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.03 E-value=0.003 Score=57.71 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=25.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---------CCcEEEEeccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---------KATFFCISAST 33 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---------~~~~~~v~~~~ 33 (343)
++++||||+|||+++..+|... +...++++...
T Consensus 105 tei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 105 TEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred EEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 3689999999999999998753 33677777654
No 488
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.03 E-value=0.0014 Score=59.94 Aligned_cols=32 Identities=25% Similarity=0.224 Sum_probs=27.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISAS 32 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~ 32 (343)
+.|.|++|+|||||++.++..++.+++.-...
T Consensus 165 ~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R 196 (325)
T TIGR01526 165 VAILGGESTGKSTLVNKLAAVFNTTSAWEYAR 196 (325)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCEEeehhH
Confidence 47899999999999999999999887655443
No 489
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.03 E-value=0.0035 Score=57.52 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=24.1
Q ss_pred EEeCCCCchHHHHHHHHHHHc---------CCcEEEEeccc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC---------KATFFCISAST 33 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l---------~~~~~~v~~~~ 33 (343)
.|+||||||||.++..+|-.. +..+++++...
T Consensus 130 EI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 130 EAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred EEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 589999999999999887422 24667776644
No 490
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.03 E-value=0.00089 Score=58.99 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=44.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc--EEEEeccc---cc---------ccccchHHHHHHHHHHHHHhcCCcEEEeccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT--FFCISAST---LT---------SKWYGEGEKMVRALFAVASVHQPSIIFIDEI 66 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~--~~~v~~~~---l~---------~~~~~~~~~~l~~~~~~~~~~~p~vl~iDei 66 (343)
||+.||.||||||..-++-..+|.+ ...+...+ +. ..-.|.........++.+.+..|.|+++-|+
T Consensus 128 ILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlvGEm 207 (353)
T COG2805 128 ILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILVGEM 207 (353)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEecc
Confidence 6899999999999999998888532 12222222 11 1122333344455566667789999999988
Q ss_pred ccc
Q psy4538 67 DSL 69 (343)
Q Consensus 67 d~l 69 (343)
-..
T Consensus 208 RD~ 210 (353)
T COG2805 208 RDL 210 (353)
T ss_pred ccH
Confidence 643
No 491
>PRK14529 adenylate kinase; Provisional
Probab=97.03 E-value=0.00043 Score=59.46 Aligned_cols=27 Identities=37% Similarity=0.664 Sum_probs=24.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~ 27 (343)
|+|.||||+||||.++.+++.++.+.+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 578999999999999999999997764
No 492
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.03 E-value=0.0027 Score=56.20 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.2
Q ss_pred EEeCCCCchHHHHHHHHHHHc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l 22 (343)
-|.||+|+||||+.|.||...
T Consensus 32 aLlGpSGaGKsTlLRiIAGLe 52 (345)
T COG1118 32 ALLGPSGAGKSTLLRIIAGLE 52 (345)
T ss_pred EEECCCCCcHHHHHHHHhCcC
Confidence 489999999999999999865
No 493
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.02 E-value=0.003 Score=54.96 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.0
Q ss_pred EEeCCCCchHHHHHHHHHHHc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l 22 (343)
-|.||.|+|||||+|++...+
T Consensus 34 ~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 34 ALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 488999999999999999855
No 494
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.01 E-value=0.0012 Score=55.85 Aligned_cols=22 Identities=36% Similarity=0.693 Sum_probs=17.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+.+.||+|||||++|-+.|-++
T Consensus 22 v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 22 VIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEE--TTSSTTHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 3678999999999999998765
No 495
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.01 E-value=0.0076 Score=56.40 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=24.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----CCcEEEEeccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----KATFFCISAST 33 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----~~~~~~v~~~~ 33 (343)
++|.||+|+||||++..+|..+ |..+..+++..
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 4689999999999999998754 44455555443
No 496
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.01 E-value=0.00097 Score=62.98 Aligned_cols=68 Identities=19% Similarity=0.201 Sum_probs=42.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE-Eecccccc--------cccch-HHHHHHHHHHHHHhcCCcEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC-ISASTLTS--------KWYGE-GEKMVRALFAVASVHQPSIIFIDEIDS 68 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~-v~~~~l~~--------~~~~~-~~~~l~~~~~~~~~~~p~vl~iDeid~ 68 (343)
+|+.||.|+|||++..++.++++.+... ++..+-.. -.+.. ..-.....++...+..|+||++.||-.
T Consensus 261 iLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 261 ILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCC
Confidence 5899999999999999999998654442 22222110 00000 000123334445568899999999974
No 497
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.01 E-value=0.0011 Score=60.99 Aligned_cols=66 Identities=26% Similarity=0.394 Sum_probs=47.6
Q ss_pred ceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCC---CCC-----CCcEEEEeecC-----CcccccHHHHHhhhc
Q psy4538 226 SIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAS---TLD-----DDLVLVIGATN-----RPQELDEAARRRLVK 292 (343)
Q Consensus 226 ~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~---~~~-----~~~v~vi~aTN-----~~~~lD~allRR~d~ 292 (343)
+|+|+|||+..-+. +-+-||..|+... ... ....+||+|+| .-..|.+|+++||-.
T Consensus 114 ~ill~DEInra~p~-----------~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~ 182 (329)
T COG0714 114 VILLLDEINRAPPE-----------VQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLL 182 (329)
T ss_pred eEEEEeccccCCHH-----------HHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEE
Confidence 69999999875433 5666666666521 111 13467777778 666789999999999
Q ss_pred eEeccCCCCC
Q psy4538 293 RLYIPLPDEQ 302 (343)
Q Consensus 293 ~i~~~~P~~~ 302 (343)
.+++++|+.+
T Consensus 183 ~~~v~yp~~~ 192 (329)
T COG0714 183 RIYVDYPDSE 192 (329)
T ss_pred EEecCCCCch
Confidence 9999999543
No 498
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.99 E-value=0.0084 Score=49.89 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+.|.||+|+|||++++.++...
T Consensus 28 ~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 28 VGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999876
No 499
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.98 E-value=0.0036 Score=60.91 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+++.||+|||||++.|++|..+
T Consensus 422 llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 422 LLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 5899999999999999999976
No 500
>PLN02459 probable adenylate kinase
Probab=96.97 E-value=0.00069 Score=59.37 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=26.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLT 35 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~ 35 (343)
++|.||||+||+|+++.+|+.+|..+ +++.++.
T Consensus 32 ii~~G~PGsGK~T~a~~la~~~~~~~--is~gdll 64 (261)
T PLN02459 32 WVFLGCPGVGKGTYASRLSKLLGVPH--IATGDLV 64 (261)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcE--EeCcHHH
Confidence 46789999999999999999998654 4555543
Done!