Query psy4538
Match_columns 343
No_of_seqs 295 out of 2841
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 19:41:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4538.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4538hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 1.8E-60 6.2E-65 472.1 16.7 299 1-304 241-653 (806)
2 1ypw_A Transitional endoplasmi 100.0 2.6E-41 8.7E-46 340.5 16.2 299 1-304 241-653 (806)
3 4b4t_J 26S protease regulatory 100.0 9.1E-39 3.1E-43 293.1 20.9 203 1-215 185-392 (405)
4 4b4t_I 26S protease regulatory 100.0 2.4E-38 8.1E-43 290.9 16.9 208 1-220 219-431 (437)
5 4b4t_M 26S protease regulatory 100.0 6.1E-38 2.1E-42 291.9 19.4 205 1-217 218-427 (434)
6 4b4t_L 26S protease subunit RP 100.0 2.6E-37 8.8E-42 287.9 17.7 204 1-216 218-426 (437)
7 4b4t_H 26S protease regulatory 100.0 9.6E-37 3.3E-41 282.9 21.2 203 1-215 246-453 (467)
8 4b4t_K 26S protease regulatory 100.0 1.3E-36 4.5E-41 282.7 21.6 207 1-219 209-422 (428)
9 3cf2_A TER ATPase, transitiona 100.0 3.2E-36 1.1E-40 298.8 6.5 218 1-221 514-752 (806)
10 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.8E-33 6.1E-38 255.7 22.3 219 1-220 48-307 (322)
11 3eie_A Vacuolar protein sortin 100.0 3.8E-33 1.3E-37 253.9 20.8 219 1-220 54-306 (322)
12 2qp9_X Vacuolar protein sortin 100.0 2.3E-32 7.9E-37 251.7 20.3 219 1-220 87-339 (355)
13 2zan_A Vacuolar protein sortin 100.0 7.8E-32 2.7E-36 255.1 17.8 219 1-220 170-429 (444)
14 3d8b_A Fidgetin-like protein 1 100.0 1.9E-30 6.4E-35 239.3 21.6 220 1-220 120-342 (357)
15 2x8a_A Nuclear valosin-contain 100.0 1.6E-30 5.6E-35 230.7 17.4 219 1-221 47-273 (274)
16 3b9p_A CG5977-PA, isoform A; A 100.0 1.1E-29 3.7E-34 228.5 20.4 218 1-218 57-278 (297)
17 3vfd_A Spastin; ATPase, microt 100.0 1.2E-29 3.9E-34 236.8 20.5 218 1-218 151-371 (389)
18 3cf0_A Transitional endoplasmi 100.0 1.7E-30 5.7E-35 234.2 11.8 217 1-220 52-289 (301)
19 3hu3_A Transitional endoplasmi 100.0 3.7E-29 1.3E-33 238.3 16.8 228 1-231 241-478 (489)
20 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.3E-28 4.3E-33 217.4 17.7 207 1-218 42-255 (262)
21 2ce7_A Cell division protein F 100.0 1.8E-28 6.2E-33 231.7 18.7 203 1-215 52-259 (476)
22 3h4m_A Proteasome-activating n 100.0 1.3E-27 4.3E-32 213.7 21.5 202 1-214 54-260 (285)
23 1lv7_A FTSH; alpha/beta domain 100.0 1.6E-27 5.4E-32 210.0 19.3 201 1-213 48-253 (257)
24 2dhr_A FTSH; AAA+ protein, hex 99.9 1.8E-26 6.3E-31 219.2 17.3 204 1-216 67-275 (499)
25 1ixz_A ATP-dependent metallopr 99.9 5.2E-26 1.8E-30 199.9 17.0 197 1-209 52-253 (254)
26 1iy2_A ATP-dependent metallopr 99.9 5.4E-25 1.8E-29 196.0 18.7 197 1-209 76-277 (278)
27 2r62_A Cell division protease 99.9 8.6E-28 2.9E-32 212.9 -0.7 208 1-219 47-260 (268)
28 1ypw_A Transitional endoplasmi 99.9 3.5E-28 1.2E-32 245.0 -5.0 218 1-221 514-752 (806)
29 2c9o_A RUVB-like 1; hexameric 99.9 5.3E-27 1.8E-31 223.0 -0.8 262 1-302 66-369 (456)
30 1r6b_X CLPA protein; AAA+, N-t 99.9 4.5E-24 1.5E-28 215.3 20.0 171 1-180 210-406 (758)
31 3pxi_A Negative regulator of g 99.9 6.9E-24 2.3E-28 213.7 15.0 155 1-180 204-382 (758)
32 4b4t_J 26S protease regulatory 99.9 8.8E-25 3E-29 200.5 7.0 80 223-304 240-324 (405)
33 3t15_A Ribulose bisphosphate c 99.9 1.2E-23 4.2E-28 188.4 11.9 166 1-173 39-221 (293)
34 4b4t_I 26S protease regulatory 99.9 5.3E-24 1.8E-28 195.9 2.7 80 223-304 274-358 (437)
35 1qvr_A CLPB protein; coiled co 99.9 1.2E-21 4E-26 199.6 19.8 169 1-179 194-388 (854)
36 4b4t_M 26S protease regulatory 99.9 7.6E-24 2.6E-28 197.1 2.7 79 224-304 274-357 (434)
37 4b4t_L 26S protease subunit RP 99.9 8.4E-24 2.9E-28 197.0 2.7 80 223-304 273-357 (437)
38 4b4t_H 26S protease regulatory 99.9 4.5E-23 1.5E-27 191.5 7.0 80 223-304 301-385 (467)
39 4b4t_K 26S protease regulatory 99.9 4E-23 1.4E-27 192.1 5.1 80 223-304 264-349 (428)
40 3syl_A Protein CBBX; photosynt 99.9 2.2E-21 7.7E-26 175.0 11.8 177 1-186 70-265 (309)
41 1g41_A Heat shock protein HSLU 99.9 1.5E-21 5.2E-26 181.9 10.4 265 1-302 53-339 (444)
42 3uk6_A RUVB-like 2; hexameric 99.8 4.4E-20 1.5E-24 170.6 14.1 188 1-213 73-331 (368)
43 1d2n_A N-ethylmaleimide-sensit 99.8 6E-19 2.1E-23 156.3 17.0 193 1-214 67-266 (272)
44 3pfi_A Holliday junction ATP-d 99.8 2.2E-18 7.5E-23 157.4 19.1 185 1-214 58-256 (338)
45 1ofh_A ATP-dependent HSL prote 99.8 2.1E-18 7.1E-23 155.4 16.5 210 1-213 53-300 (310)
46 3m6a_A ATP-dependent protease 99.8 1.3E-18 4.6E-23 168.2 12.2 201 1-213 111-342 (543)
47 2z4s_A Chromosomal replication 99.8 2E-18 7E-23 162.9 12.9 192 1-214 133-334 (440)
48 1l8q_A Chromosomal replication 99.8 7.5E-18 2.6E-22 153.0 15.6 192 1-212 40-240 (324)
49 1hqc_A RUVB; extended AAA-ATPa 99.8 1.6E-17 5.4E-22 150.7 17.5 185 1-213 41-239 (324)
50 2chg_A Replication factor C sm 99.7 1.2E-16 3.9E-21 136.4 19.4 173 1-210 41-224 (226)
51 3hws_A ATP-dependent CLP prote 99.7 1.7E-18 5.9E-23 159.7 7.6 186 1-186 54-325 (363)
52 3bos_A Putative DNA replicatio 99.7 2E-17 6.8E-22 143.2 12.7 178 1-210 55-241 (242)
53 3pvs_A Replication-associated 99.7 4.6E-17 1.6E-21 153.5 15.5 181 1-214 53-246 (447)
54 1njg_A DNA polymerase III subu 99.7 1.8E-16 6.2E-21 137.0 18.1 173 1-209 48-248 (250)
55 2v1u_A Cell division control p 99.7 5.2E-17 1.8E-21 150.6 15.1 195 1-213 47-277 (387)
56 3te6_A Regulatory protein SIR3 99.7 3.8E-17 1.3E-21 146.4 13.0 171 1-185 48-288 (318)
57 4fcw_A Chaperone protein CLPB; 99.7 6.8E-17 2.3E-21 145.6 12.6 171 1-184 50-279 (311)
58 2qby_B CDC6 homolog 3, cell di 99.7 5.7E-16 2E-20 143.6 17.0 186 1-213 48-271 (384)
59 1in4_A RUVB, holliday junction 99.7 1.7E-15 5.7E-20 138.0 19.7 184 1-213 54-251 (334)
60 3u61_B DNA polymerase accessor 99.7 1.1E-15 3.8E-20 138.6 15.6 157 1-180 51-220 (324)
61 2r44_A Uncharacterized protein 99.7 1.3E-15 4.3E-20 138.7 16.0 188 1-213 49-298 (331)
62 1jbk_A CLPB protein; beta barr 99.7 1.1E-16 3.9E-21 133.2 7.4 131 1-141 46-194 (195)
63 1xwi_A SKD1 protein; VPS4B, AA 99.7 9.9E-17 3.4E-21 145.4 7.6 81 223-304 104-184 (322)
64 2qby_A CDC6 homolog 1, cell di 99.7 2.4E-15 8.2E-20 139.2 17.0 194 1-213 48-273 (386)
65 1fnn_A CDC6P, cell division co 99.6 4.4E-15 1.5E-19 137.8 17.8 195 1-215 47-277 (389)
66 1sxj_A Activator 1 95 kDa subu 99.6 6.1E-16 2.1E-20 149.0 12.0 163 1-178 80-254 (516)
67 1um8_A ATP-dependent CLP prote 99.6 8E-16 2.7E-20 142.5 12.2 204 1-207 75-360 (376)
68 1sxj_D Activator 1 41 kDa subu 99.6 3.8E-15 1.3E-19 136.5 16.5 182 1-210 61-261 (353)
69 1g8p_A Magnesium-chelatase 38 99.6 2E-15 6.8E-20 138.3 14.1 139 57-215 144-325 (350)
70 3pxg_A Negative regulator of g 99.6 3.2E-16 1.1E-20 149.0 8.8 156 1-181 204-383 (468)
71 3pxi_A Negative regulator of g 99.6 1.5E-15 5.3E-20 152.9 13.3 168 1-183 524-724 (758)
72 1jr3_A DNA polymerase III subu 99.6 8.9E-15 3E-19 135.0 16.8 174 1-210 41-242 (373)
73 2chq_A Replication factor C sm 99.6 3.4E-15 1.2E-19 134.7 13.7 177 1-210 41-224 (319)
74 1iqp_A RFCS; clamp loader, ext 99.6 1.1E-14 3.6E-19 132.0 16.3 178 1-211 49-233 (327)
75 1r6b_X CLPA protein; AAA+, N-t 99.6 2.2E-15 7.6E-20 151.8 12.9 170 1-183 491-715 (758)
76 1sxj_B Activator 1 37 kDa subu 99.6 9.6E-15 3.3E-19 132.0 15.8 174 1-211 45-230 (323)
77 3eie_A Vacuolar protein sortin 99.6 5.2E-16 1.8E-20 140.7 4.7 80 223-303 109-188 (322)
78 3cf0_A Transitional endoplasmi 99.6 5.1E-16 1.7E-20 139.4 3.3 80 223-304 107-191 (301)
79 2qp9_X Vacuolar protein sortin 99.6 8.2E-16 2.8E-20 141.2 4.6 79 224-303 143-221 (355)
80 2p65_A Hypothetical protein PF 99.6 4.7E-15 1.6E-19 122.9 8.5 123 1-133 46-187 (187)
81 2zan_A Vacuolar protein sortin 99.6 1.2E-15 4E-20 144.2 5.2 80 223-303 226-305 (444)
82 2ce7_A Cell division protein F 99.6 7.8E-16 2.7E-20 145.5 3.4 80 223-304 107-191 (476)
83 1sxj_E Activator 1 40 kDa subu 99.6 3.6E-14 1.2E-18 130.2 14.1 162 1-183 39-244 (354)
84 2x8a_A Nuclear valosin-contain 99.5 2.6E-15 8.9E-20 132.8 5.3 79 224-304 103-183 (274)
85 1sxj_C Activator 1 40 kDa subu 99.5 1.6E-13 5.6E-18 125.2 16.5 178 1-210 49-237 (340)
86 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 1.4E-14 4.8E-19 137.8 8.6 171 1-184 44-267 (500)
87 1qvr_A CLPB protein; coiled co 99.5 3.6E-14 1.2E-18 144.5 11.3 171 1-184 591-820 (854)
88 2bjv_A PSP operon transcriptio 99.5 1.5E-13 5.2E-18 120.9 13.9 169 1-183 32-240 (265)
89 1ojl_A Transcriptional regulat 99.5 7.3E-14 2.5E-18 125.4 11.4 168 1-183 28-235 (304)
90 3hu3_A Transitional endoplasmi 99.5 1.1E-14 3.9E-19 138.5 5.0 79 224-304 297-377 (489)
91 1a5t_A Delta prime, HOLB; zinc 99.5 1.3E-12 4.5E-17 118.8 16.6 152 1-177 27-206 (334)
92 3d8b_A Fidgetin-like protein 1 99.4 3.6E-14 1.2E-18 130.4 4.7 81 223-303 175-255 (357)
93 3f9v_A Minichromosome maintena 99.4 2.1E-14 7.3E-19 140.0 3.1 189 1-213 330-588 (595)
94 3h4m_A Proteasome-activating n 99.4 1.5E-13 5E-18 122.2 7.3 80 223-304 109-193 (285)
95 1w5s_A Origin recognition comp 99.4 6E-12 2.1E-16 117.5 17.9 197 1-213 53-294 (412)
96 3vfd_A Spastin; ATPase, microt 99.4 5.9E-14 2E-18 130.5 3.1 81 223-303 206-286 (389)
97 3b9p_A CG5977-PA, isoform A; A 99.4 1.1E-13 3.9E-18 123.7 3.8 82 223-304 112-194 (297)
98 2dhr_A FTSH; AAA+ protein, hex 99.4 2.5E-13 8.7E-18 129.0 5.3 80 223-304 122-206 (499)
99 3n70_A Transport activator; si 99.4 9.5E-13 3.3E-17 105.0 6.9 106 1-131 27-143 (145)
100 1lv7_A FTSH; alpha/beta domain 99.3 6.8E-13 2.3E-17 116.2 5.3 80 223-304 103-187 (257)
101 2qz4_A Paraplegin; AAA+, SPG7, 99.3 2E-13 6.9E-18 119.7 1.6 79 224-304 98-182 (262)
102 2r62_A Cell division protease 99.3 3.9E-13 1.3E-17 118.4 2.1 80 224-304 103-188 (268)
103 3t15_A Ribulose bisphosphate c 99.3 1.2E-12 3.9E-17 117.0 4.5 79 223-303 98-189 (293)
104 3co5_A Putative two-component 99.3 2.1E-12 7.1E-17 102.7 5.4 106 1-131 30-141 (143)
105 1ixz_A ATP-dependent metallopr 99.3 1.4E-12 4.7E-17 114.0 4.6 79 224-304 108-191 (254)
106 2gno_A DNA polymerase III, gam 99.3 3.3E-11 1.1E-15 107.9 13.2 122 1-145 21-152 (305)
107 3k1j_A LON protease, ATP-depen 99.3 9.9E-12 3.4E-16 121.8 10.0 135 57-211 201-374 (604)
108 1iy2_A ATP-dependent metallopr 99.2 6.8E-12 2.3E-16 111.1 6.7 79 224-304 132-215 (278)
109 4akg_A Glutathione S-transfera 99.1 2.8E-10 9.5E-15 125.7 13.3 138 1-148 1270-1434(2695)
110 3cmw_A Protein RECA, recombina 99.1 1.2E-10 4.2E-15 123.5 9.6 53 224-279 1160-1218(1706)
111 2krk_A 26S protease regulatory 99.1 4.7E-11 1.6E-15 85.6 4.4 77 129-215 8-84 (86)
112 3kw6_A 26S protease regulatory 99.1 1.3E-10 4.5E-15 82.0 5.8 75 130-214 1-75 (78)
113 3aji_B S6C, proteasome (prosom 99.0 4E-10 1.4E-14 80.5 6.7 75 133-217 2-76 (83)
114 2kjq_A DNAA-related protein; s 99.0 1E-09 3.5E-14 87.6 8.6 100 1-127 39-143 (149)
115 1ny5_A Transcriptional regulat 99.0 4.3E-09 1.5E-13 97.5 13.7 181 1-208 163-383 (387)
116 3dzd_A Transcriptional regulat 99.0 4.6E-09 1.6E-13 96.5 13.0 166 1-183 155-361 (368)
117 2qen_A Walker-type ATPase; unk 99.0 3.4E-08 1.2E-12 89.6 18.8 166 1-178 34-248 (350)
118 3vlf_B 26S protease regulatory 99.0 6.8E-10 2.3E-14 80.1 5.4 78 133-220 2-79 (88)
119 2fna_A Conserved hypothetical 98.9 4.7E-08 1.6E-12 88.9 18.0 163 1-178 33-252 (357)
120 3ec2_A DNA replication protein 98.9 1.2E-09 3.9E-14 90.1 6.2 67 1-69 41-112 (180)
121 2r2a_A Uncharacterized protein 98.9 1.6E-09 5.5E-14 90.6 6.8 127 1-136 8-157 (199)
122 3cmw_A Protein RECA, recombina 98.8 5E-09 1.7E-13 111.4 8.9 108 1-111 1085-1217(1706)
123 1g41_A Heat shock protein HSLU 98.8 2.1E-10 7.3E-15 106.9 -1.7 68 228-302 111-181 (444)
124 2vhj_A Ntpase P4, P4; non- hyd 98.8 3E-09 1E-13 94.6 3.5 70 1-72 126-197 (331)
125 3f8t_A Predicted ATPase involv 98.7 2.3E-08 7.9E-13 92.9 8.6 188 1-214 242-485 (506)
126 1jr3_D DNA polymerase III, del 98.7 3.2E-07 1.1E-11 83.4 15.4 179 1-212 21-209 (343)
127 4akg_A Glutathione S-transfera 98.7 5.1E-08 1.8E-12 108.0 11.3 130 2-143 649-791 (2695)
128 2w58_A DNAI, primosome compone 98.6 2.4E-08 8.2E-13 83.7 5.3 67 1-69 57-127 (202)
129 3cmu_A Protein RECA, recombina 98.6 4.4E-07 1.5E-11 97.8 15.9 72 1-72 1084-1174(2050)
130 1tue_A Replication protein E1; 98.6 8.1E-08 2.8E-12 79.7 6.6 27 1-27 61-87 (212)
131 3vkg_A Dynein heavy chain, cyt 98.6 9.7E-07 3.3E-11 98.7 16.9 139 1-148 1307-1472(3245)
132 2dzn_B 26S protease regulatory 98.5 1.1E-08 3.7E-13 72.7 0.3 74 135-218 1-75 (82)
133 2c9o_A RUVB-like 1; hexameric 98.5 4.1E-07 1.4E-11 86.0 10.8 130 58-212 296-437 (456)
134 1ye8_A Protein THEP1, hypothet 98.5 1.8E-06 6.3E-11 70.7 12.5 27 1-27 3-29 (178)
135 1d2n_A N-ethylmaleimide-sensit 98.4 7.2E-08 2.5E-12 84.7 3.0 77 223-301 123-200 (272)
136 3syl_A Protein CBBX; photosynt 98.4 3.4E-08 1.2E-12 88.3 0.7 74 224-303 130-208 (309)
137 2qgz_A Helicase loader, putati 98.4 1.1E-07 3.9E-12 85.0 3.8 67 1-69 155-226 (308)
138 3pfi_A Holliday junction ATP-d 98.4 2.1E-07 7.2E-12 84.3 4.4 70 223-303 105-188 (338)
139 3vkg_A Dynein heavy chain, cyt 98.4 1.8E-06 6.1E-11 96.6 12.0 133 2-142 608-750 (3245)
140 3cmu_A Protein RECA, recombina 98.3 1.9E-06 6.4E-11 93.0 9.8 106 1-108 1430-1560(2050)
141 3m6a_A ATP-dependent protease 98.3 1.6E-07 5.5E-12 90.6 1.4 70 226-303 177-257 (543)
142 1ofh_A ATP-dependent HSL prote 98.3 1.4E-06 4.7E-11 77.6 7.2 79 224-302 116-205 (310)
143 1u0j_A DNA replication protein 98.2 8.2E-06 2.8E-10 70.7 9.8 24 1-24 107-130 (267)
144 2p65_A Hypothetical protein PF 98.1 9.7E-07 3.3E-11 72.2 3.4 68 224-300 115-187 (187)
145 1jbk_A CLPB protein; beta barr 98.1 6.3E-07 2.2E-11 73.6 1.3 70 224-303 115-189 (195)
146 3hws_A ATP-dependent CLP prote 98.1 1.1E-06 3.6E-11 80.6 2.7 40 223-262 115-157 (363)
147 3hr8_A Protein RECA; alpha and 98.0 3.2E-05 1.1E-09 70.2 10.2 71 1-71 64-153 (356)
148 1qhx_A CPT, protein (chloramph 97.9 7.4E-06 2.5E-10 66.7 3.5 34 1-34 6-39 (178)
149 1xp8_A RECA protein, recombina 97.8 7.9E-05 2.7E-09 68.0 10.1 71 1-71 77-166 (366)
150 1n0w_A DNA repair protein RAD5 97.8 3.8E-05 1.3E-09 65.6 7.5 72 1-72 27-134 (243)
151 1um8_A ATP-dependent CLP prote 97.8 8E-06 2.7E-10 75.1 3.3 78 223-302 136-233 (376)
152 2zr9_A Protein RECA, recombina 97.8 3.1E-05 1E-09 70.4 6.8 71 1-71 64-153 (349)
153 2w0m_A SSO2452; RECA, SSPF, un 97.8 0.00014 4.9E-09 61.4 10.4 31 1-31 26-59 (235)
154 1g8p_A Magnesium-chelatase 38 97.8 2.5E-05 8.7E-10 70.7 5.5 67 224-301 144-220 (350)
155 2cvh_A DNA repair and recombin 97.7 6.1E-05 2.1E-09 63.3 7.5 33 1-33 23-55 (220)
156 1z6t_A APAF-1, apoptotic prote 97.7 0.00022 7.6E-09 69.4 12.4 147 1-177 150-329 (591)
157 3trf_A Shikimate kinase, SK; a 97.7 1.4E-05 4.8E-10 65.5 2.8 29 1-29 8-36 (185)
158 1svm_A Large T antigen; AAA+ f 97.7 1.1E-05 3.8E-10 73.9 2.1 59 1-71 172-230 (377)
159 2z43_A DNA repair and recombin 97.7 6.2E-05 2.1E-09 67.7 7.0 71 1-71 110-217 (324)
160 1u94_A RECA protein, recombina 97.7 6.7E-05 2.3E-09 68.2 7.2 71 1-71 66-155 (356)
161 4fcw_A Chaperone protein CLPB; 97.7 2.9E-05 9.8E-10 69.1 4.7 67 225-302 120-219 (311)
162 3kb2_A SPBC2 prophage-derived 97.7 2.2E-05 7.6E-10 63.3 3.4 30 1-30 4-33 (173)
163 2orw_A Thymidine kinase; TMTK, 97.7 4.8E-05 1.7E-09 62.5 5.4 112 2-130 7-137 (184)
164 1v5w_A DMC1, meiotic recombina 97.6 0.0001 3.5E-09 66.8 7.8 33 1-33 125-166 (343)
165 3io5_A Recombination and repai 97.6 0.00012 4.2E-09 64.8 7.8 71 1-72 31-126 (333)
166 1via_A Shikimate kinase; struc 97.6 2.9E-05 9.9E-10 63.1 3.6 28 1-28 7-34 (175)
167 3vaa_A Shikimate kinase, SK; s 97.6 2.2E-05 7.5E-10 65.3 2.8 29 1-29 28-56 (199)
168 2v1u_A Cell division control p 97.6 6.4E-05 2.2E-09 68.8 6.1 71 224-302 130-204 (387)
169 2iyv_A Shikimate kinase, SK; t 97.6 2.4E-05 8.1E-10 64.1 2.8 29 1-29 5-33 (184)
170 1kag_A SKI, shikimate kinase I 97.6 3.8E-05 1.3E-09 62.1 3.8 27 1-27 7-33 (173)
171 1zuh_A Shikimate kinase; alpha 97.6 2.8E-05 9.7E-10 62.6 2.9 29 1-29 10-38 (168)
172 3iij_A Coilin-interacting nucl 97.6 2.8E-05 9.7E-10 63.4 2.7 29 1-29 14-42 (180)
173 2r44_A Uncharacterized protein 97.6 2.6E-05 8.9E-10 70.2 2.7 68 225-303 110-189 (331)
174 2b8t_A Thymidine kinase; deoxy 97.6 0.0006 2E-08 57.6 10.8 68 1-69 15-101 (223)
175 2ze6_A Isopentenyl transferase 97.6 3.8E-05 1.3E-09 66.5 3.5 32 1-32 4-35 (253)
176 3f9v_A Minichromosome maintena 97.5 1.1E-05 3.9E-10 78.5 -0.1 67 224-301 391-480 (595)
177 2ehv_A Hypothetical protein PH 97.5 0.00042 1.4E-08 59.3 9.6 19 1-19 33-51 (251)
178 4a74_A DNA repair and recombin 97.5 0.00016 5.6E-09 61.0 6.8 22 1-22 28-49 (231)
179 1e6c_A Shikimate kinase; phosp 97.5 5.6E-05 1.9E-09 61.0 3.6 28 1-28 5-32 (173)
180 1hqc_A RUVB; extended AAA-ATPa 97.5 3.2E-05 1.1E-09 69.3 2.2 70 223-303 89-172 (324)
181 3lda_A DNA repair protein RAD5 97.5 0.00023 7.9E-09 65.7 8.0 72 1-72 181-288 (400)
182 2rhm_A Putative kinase; P-loop 97.5 5.1E-05 1.8E-09 62.4 3.3 28 1-28 8-35 (193)
183 3lw7_A Adenylate kinase relate 97.5 5.9E-05 2E-09 60.8 3.6 28 1-29 4-31 (179)
184 1y63_A LMAJ004144AAA protein; 97.5 3.7E-05 1.3E-09 63.1 2.4 28 1-28 13-41 (184)
185 3a4m_A L-seryl-tRNA(SEC) kinas 97.5 0.00021 7.2E-09 62.0 7.3 34 1-34 7-43 (260)
186 3uk6_A RUVB-like 2; hexameric 97.5 0.00012 4E-09 66.8 5.9 64 223-302 188-262 (368)
187 2cdn_A Adenylate kinase; phosp 97.5 4.6E-05 1.6E-09 63.3 2.9 29 1-29 23-51 (201)
188 3kl4_A SRP54, signal recogniti 97.5 0.00056 1.9E-08 63.6 10.4 201 1-213 100-341 (433)
189 2a5y_B CED-4; apoptosis; HET: 97.5 0.00078 2.7E-08 65.0 11.8 149 1-175 155-336 (549)
190 2chg_A Replication factor C sm 97.5 0.00014 4.8E-09 60.7 5.7 64 223-302 101-164 (226)
191 3cm0_A Adenylate kinase; ATP-b 97.5 6.2E-05 2.1E-09 61.6 3.3 27 1-27 7-33 (186)
192 2pt5_A Shikimate kinase, SK; a 97.4 5.4E-05 1.9E-09 60.8 2.9 28 1-28 3-30 (168)
193 3t61_A Gluconokinase; PSI-biol 97.4 7.1E-05 2.4E-09 62.2 3.6 28 1-28 21-48 (202)
194 2dr3_A UPF0273 protein PH0284; 97.4 0.00097 3.3E-08 56.8 11.0 31 1-31 26-59 (247)
195 2i3b_A HCR-ntpase, human cance 97.4 0.00065 2.2E-08 55.9 9.3 22 1-22 4-25 (189)
196 3dl0_A Adenylate kinase; phosp 97.4 7.7E-05 2.6E-09 62.7 3.8 29 1-29 3-31 (216)
197 2p5t_B PEZT; postsegregational 97.4 0.00018 6.1E-09 62.2 6.1 34 1-34 35-68 (253)
198 1tev_A UMP-CMP kinase; ploop, 97.4 7.8E-05 2.7E-09 61.3 3.6 28 1-28 6-33 (196)
199 3fb4_A Adenylate kinase; psych 97.4 8E-05 2.7E-09 62.6 3.7 29 1-29 3-31 (216)
200 3sr0_A Adenylate kinase; phosp 97.4 7.9E-05 2.7E-09 62.3 3.6 33 1-35 3-35 (206)
201 2c95_A Adenylate kinase 1; tra 97.4 5.4E-05 1.8E-09 62.4 2.4 29 1-29 12-40 (196)
202 2r8r_A Sensor protein; KDPD, P 97.4 0.00096 3.3E-08 56.2 10.0 31 1-31 9-42 (228)
203 1g5t_A COB(I)alamin adenosyltr 97.4 0.0015 5E-08 53.8 10.9 114 1-129 31-177 (196)
204 3u61_B DNA polymerase accessor 97.4 7.9E-05 2.7E-09 66.8 3.6 66 223-303 104-169 (324)
205 2bwj_A Adenylate kinase 5; pho 97.4 5.7E-05 1.9E-09 62.5 2.4 28 1-28 15-42 (199)
206 1ly1_A Polynucleotide kinase; 97.4 6.5E-05 2.2E-09 61.0 2.7 27 1-27 5-32 (181)
207 3jvv_A Twitching mobility prot 97.4 0.00015 5.2E-09 65.8 5.3 67 1-67 126-206 (356)
208 2vli_A Antibiotic resistance p 97.4 6.2E-05 2.1E-09 61.4 2.5 27 1-27 8-34 (183)
209 1kht_A Adenylate kinase; phosp 97.4 7.2E-05 2.5E-09 61.3 2.9 23 1-23 6-28 (192)
210 1aky_A Adenylate kinase; ATP:A 97.4 9.4E-05 3.2E-09 62.4 3.6 28 1-28 7-34 (220)
211 1zd8_A GTP:AMP phosphotransfer 97.4 6.3E-05 2.1E-09 63.9 2.5 29 1-29 10-38 (227)
212 1zp6_A Hypothetical protein AT 97.4 6.8E-05 2.3E-09 61.6 2.6 33 1-33 12-44 (191)
213 1pzn_A RAD51, DNA repair and r 97.4 0.00032 1.1E-08 63.6 7.3 33 1-33 134-175 (349)
214 3crm_A TRNA delta(2)-isopenten 97.4 0.00034 1.2E-08 62.4 7.3 32 1-32 8-39 (323)
215 3e1s_A Exodeoxyribonuclease V, 97.4 0.00012 3.9E-09 71.0 4.5 31 1-31 207-240 (574)
216 1gvn_B Zeta; postsegregational 97.4 7.8E-05 2.7E-09 65.8 3.0 36 1-36 36-71 (287)
217 1ukz_A Uridylate kinase; trans 97.4 7.9E-05 2.7E-09 61.9 2.9 29 1-29 18-46 (203)
218 1knq_A Gluconate kinase; ALFA/ 97.4 0.0001 3.6E-09 59.6 3.5 27 1-27 11-37 (175)
219 2iut_A DNA translocase FTSK; n 97.4 0.0019 6.5E-08 61.8 12.6 73 59-141 345-419 (574)
220 3nbx_X ATPase RAVA; AAA+ ATPas 97.3 0.00016 5.6E-09 68.6 5.0 66 224-301 109-184 (500)
221 1qf9_A UMP/CMP kinase, protein 97.3 0.0001 3.6E-09 60.4 3.2 29 1-29 9-37 (194)
222 3sfz_A APAF-1, apoptotic pepti 97.3 0.0012 4.2E-08 69.5 12.0 148 1-176 150-328 (1249)
223 4gp7_A Metallophosphoesterase; 97.3 0.0004 1.4E-08 56.1 6.5 17 1-17 12-28 (171)
224 1ak2_A Adenylate kinase isoenz 97.3 0.00013 4.3E-09 62.3 3.6 28 1-28 19-46 (233)
225 4eun_A Thermoresistant glucoki 97.3 0.00013 4.5E-09 60.6 3.6 27 1-27 32-58 (200)
226 3be4_A Adenylate kinase; malar 97.3 0.00011 3.9E-09 61.8 3.3 29 1-29 8-36 (217)
227 3tlx_A Adenylate kinase 2; str 97.3 9.7E-05 3.3E-09 63.5 2.8 29 1-29 32-60 (243)
228 2r2a_A Uncharacterized protein 97.3 0.00029 9.8E-09 58.5 5.5 72 224-304 87-158 (199)
229 3umf_A Adenylate kinase; rossm 97.3 0.00013 4.5E-09 61.4 3.4 33 1-35 32-64 (217)
230 2i1q_A DNA repair and recombin 97.3 0.00029 1E-08 63.1 5.8 21 1-21 101-121 (322)
231 2pbr_A DTMP kinase, thymidylat 97.3 0.00018 6.1E-09 59.1 4.0 30 1-30 3-35 (195)
232 1e4v_A Adenylate kinase; trans 97.3 0.00013 4.6E-09 61.2 3.3 29 1-29 3-31 (214)
233 2ius_A DNA translocase FTSK; n 97.3 0.0029 9.9E-08 60.0 12.6 75 58-142 297-374 (512)
234 2xb4_A Adenylate kinase; ATP-b 97.2 0.00017 5.7E-09 61.1 3.6 28 1-28 3-30 (223)
235 2eyu_A Twitching motility prot 97.2 0.00032 1.1E-08 60.9 5.3 67 1-67 28-108 (261)
236 1ex7_A Guanylate kinase; subst 97.2 0.0002 6.7E-09 58.8 3.8 23 1-23 4-26 (186)
237 1cke_A CK, MSSA, protein (cyti 97.2 0.00018 6E-09 60.9 3.6 27 1-27 8-34 (227)
238 1zak_A Adenylate kinase; ATP:A 97.2 0.00012 4E-09 61.9 2.4 27 1-27 8-34 (222)
239 1njg_A DNA polymerase III subu 97.2 0.00058 2E-08 57.6 6.9 64 223-302 125-188 (250)
240 2jaq_A Deoxyguanosine kinase; 97.2 0.00018 6E-09 59.6 3.4 27 1-27 3-29 (205)
241 2pez_A Bifunctional 3'-phospho 97.2 0.00025 8.6E-09 57.6 4.1 32 1-32 8-42 (179)
242 2z0h_A DTMP kinase, thymidylat 97.2 0.00026 8.9E-09 58.3 4.0 30 1-30 3-35 (197)
243 2if2_A Dephospho-COA kinase; a 97.2 0.00015 5.1E-09 60.3 2.4 28 1-29 4-31 (204)
244 3upu_A ATP-dependent DNA helic 97.2 0.00034 1.2E-08 66.0 5.1 22 1-22 48-69 (459)
245 1nks_A Adenylate kinase; therm 97.1 0.00012 4.2E-09 60.0 1.7 23 1-23 4-26 (194)
246 1nlf_A Regulatory protein REPA 97.1 0.0025 8.6E-08 55.7 10.3 22 1-22 33-54 (279)
247 1vma_A Cell division protein F 97.1 0.0044 1.5E-07 54.9 12.0 31 1-31 107-140 (306)
248 3r20_A Cytidylate kinase; stru 97.1 0.00025 8.5E-09 60.4 3.6 27 1-27 12-38 (233)
249 3uie_A Adenylyl-sulfate kinase 97.1 0.00025 8.6E-09 58.8 3.4 32 1-32 28-62 (200)
250 2grj_A Dephospho-COA kinase; T 97.1 0.0002 6.7E-09 59.2 2.7 28 1-28 15-42 (192)
251 2v54_A DTMP kinase, thymidylat 97.1 0.00026 8.8E-09 58.7 3.4 30 1-30 7-37 (204)
252 3ake_A Cytidylate kinase; CMP 97.1 0.00028 9.7E-09 58.6 3.6 29 1-29 5-33 (208)
253 3te6_A Regulatory protein SIR3 97.1 0.0003 1E-08 62.7 4.0 66 223-302 131-201 (318)
254 2fz4_A DNA repair protein RAD2 97.1 0.00052 1.8E-08 58.7 5.3 32 1-32 111-142 (237)
255 2bbw_A Adenylate kinase 4, AK4 97.1 0.00027 9.3E-09 60.7 3.3 27 1-27 30-56 (246)
256 3nwj_A ATSK2; P loop, shikimat 97.1 0.0003 1E-08 60.6 3.5 29 1-29 51-79 (250)
257 3pvs_A Replication-associated 97.1 0.00022 7.5E-09 66.9 2.9 62 223-302 105-168 (447)
258 2r6a_A DNAB helicase, replicat 97.1 0.0012 4E-08 62.2 7.8 31 1-31 206-240 (454)
259 1jjv_A Dephospho-COA kinase; P 97.1 0.00028 9.4E-09 58.8 3.2 27 1-28 5-31 (206)
260 4e22_A Cytidylate kinase; P-lo 97.0 0.00041 1.4E-08 59.9 3.8 27 1-27 30-56 (252)
261 1l8q_A Chromosomal replication 97.0 0.00034 1.2E-08 62.6 3.1 67 224-302 98-169 (324)
262 2plr_A DTMP kinase, probable t 97.0 0.00034 1.2E-08 58.2 2.9 25 1-25 7-31 (213)
263 1uj2_A Uridine-cytidine kinase 96.9 0.00061 2.1E-08 58.7 4.4 36 1-36 25-68 (252)
264 2qby_A CDC6 homolog 1, cell di 96.9 0.001 3.5E-08 60.5 6.1 69 224-302 128-200 (386)
265 3foz_A TRNA delta(2)-isopenten 96.9 0.00043 1.5E-08 61.2 3.3 34 1-34 13-46 (316)
266 3a8t_A Adenylate isopentenyltr 96.9 0.00032 1.1E-08 62.8 2.4 33 1-33 43-75 (339)
267 2z4s_A Chromosomal replication 96.9 0.0004 1.4E-08 65.0 3.2 69 224-303 194-267 (440)
268 2zts_A Putative uncharacterize 96.9 0.0041 1.4E-07 52.9 9.3 31 1-31 33-67 (251)
269 2wwf_A Thymidilate kinase, put 96.9 0.00016 5.3E-09 60.5 0.2 27 1-27 13-39 (212)
270 3zvl_A Bifunctional polynucleo 96.9 0.0027 9.4E-08 58.9 8.6 27 1-27 261-287 (416)
271 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.0006 2.1E-08 61.3 4.0 68 1-68 174-251 (330)
272 1uf9_A TT1252 protein; P-loop, 96.9 0.00051 1.7E-08 56.8 3.2 27 1-28 11-37 (203)
273 2ewv_A Twitching motility prot 96.9 0.00074 2.5E-08 61.8 4.6 67 1-67 139-219 (372)
274 2q6t_A DNAB replication FORK h 96.9 0.002 6.8E-08 60.4 7.5 31 1-31 203-237 (444)
275 3dm5_A SRP54, signal recogniti 96.9 0.0023 8E-08 59.5 7.8 200 1-213 103-341 (443)
276 3pxg_A Negative regulator of g 96.9 0.00034 1.2E-08 66.1 2.2 57 224-302 267-328 (468)
277 1fnn_A CDC6P, cell division co 96.9 0.00095 3.2E-08 61.0 5.1 69 223-302 124-196 (389)
278 1vht_A Dephospho-COA kinase; s 96.8 0.00066 2.2E-08 57.0 3.6 28 1-29 7-34 (218)
279 3d3q_A TRNA delta(2)-isopenten 96.8 0.00052 1.8E-08 61.6 3.1 32 1-32 10-41 (340)
280 3exa_A TRNA delta(2)-isopenten 96.8 0.00055 1.9E-08 60.6 3.2 35 1-35 6-40 (322)
281 1vt4_I APAF-1 related killer D 96.8 0.011 3.9E-07 60.4 12.8 21 1-21 153-173 (1221)
282 2qor_A Guanylate kinase; phosp 96.8 0.00054 1.8E-08 57.0 2.8 23 1-23 15-37 (204)
283 2h92_A Cytidylate kinase; ross 96.8 0.00078 2.7E-08 56.5 3.8 28 1-28 6-33 (219)
284 2qby_B CDC6 homolog 3, cell di 96.8 0.0016 5.6E-08 59.4 6.2 62 226-302 135-200 (384)
285 3bh0_A DNAB-like replicative h 96.8 0.011 3.9E-07 52.5 11.5 31 1-31 71-104 (315)
286 2bdt_A BH3686; alpha-beta prot 96.8 0.00081 2.8E-08 55.0 3.7 30 1-31 5-34 (189)
287 1a5t_A Delta prime, HOLB; zinc 96.8 0.0033 1.1E-07 56.5 8.0 84 199-302 87-170 (334)
288 1nn5_A Similar to deoxythymidy 96.8 0.00023 8E-09 59.4 0.4 24 1-24 12-35 (215)
289 1kgd_A CASK, peripheral plasma 96.8 0.00063 2.2E-08 55.4 2.8 23 1-23 8-30 (180)
290 3bos_A Putative DNA replicatio 96.8 0.00072 2.5E-08 57.2 3.3 70 223-303 103-178 (242)
291 1q3t_A Cytidylate kinase; nucl 96.8 0.00081 2.8E-08 57.3 3.6 28 1-28 19-46 (236)
292 2yvu_A Probable adenylyl-sulfa 96.7 0.00085 2.9E-08 54.8 3.5 31 1-31 16-49 (186)
293 1sxj_D Activator 1 41 kDa subu 96.7 0.0019 6.6E-08 58.2 5.9 62 224-301 133-194 (353)
294 2chq_A Replication factor C sm 96.7 0.0015 5.2E-08 57.9 5.1 64 223-302 101-164 (319)
295 3fdi_A Uncharacterized protein 96.7 0.00088 3E-08 55.7 3.3 28 1-28 9-36 (201)
296 1ojl_A Transcriptional regulat 96.7 0.0011 3.9E-08 58.8 4.2 69 225-305 97-179 (304)
297 2ga8_A Hypothetical 39.9 kDa p 96.7 0.00029 1E-08 63.5 0.2 28 1-28 27-54 (359)
298 3tau_A Guanylate kinase, GMP k 96.7 0.00072 2.5E-08 56.5 2.6 24 1-24 11-34 (208)
299 2qt1_A Nicotinamide riboside k 96.7 0.0005 1.7E-08 57.2 1.6 27 1-27 24-51 (207)
300 1ltq_A Polynucleotide kinase; 96.7 0.00082 2.8E-08 59.4 3.0 27 1-27 5-32 (301)
301 1w36_D RECD, exodeoxyribonucle 96.6 0.0042 1.4E-07 60.6 7.9 22 1-22 167-188 (608)
302 3tr0_A Guanylate kinase, GMP k 96.6 0.00092 3.2E-08 55.3 2.8 23 1-23 10-32 (205)
303 2f6r_A COA synthase, bifunctio 96.6 0.00096 3.3E-08 58.5 3.0 27 1-28 78-104 (281)
304 2j41_A Guanylate kinase; GMP, 96.6 0.00083 2.9E-08 55.6 2.4 22 1-22 9-30 (207)
305 1iqp_A RFCS; clamp loader, ext 96.6 0.0027 9.2E-08 56.4 5.9 63 223-301 109-171 (327)
306 2axn_A 6-phosphofructo-2-kinas 96.6 0.0056 1.9E-07 58.5 8.2 32 1-32 38-72 (520)
307 1m7g_A Adenylylsulfate kinase; 96.5 0.0013 4.3E-08 55.0 3.2 33 1-33 28-64 (211)
308 3a00_A Guanylate kinase, GMP k 96.5 0.0012 3.9E-08 54.1 2.8 23 1-23 4-26 (186)
309 3gmt_A Adenylate kinase; ssgci 96.5 0.0016 5.4E-08 55.1 3.6 27 2-28 12-38 (230)
310 3asz_A Uridine kinase; cytidin 96.5 0.001 3.5E-08 55.4 2.4 23 1-23 9-31 (211)
311 1c9k_A COBU, adenosylcobinamid 96.4 0.0015 5E-08 53.2 2.9 32 1-33 2-33 (180)
312 1rz3_A Hypothetical protein rb 96.4 0.0022 7.4E-08 53.1 4.1 32 1-32 25-59 (201)
313 3c8u_A Fructokinase; YP_612366 96.4 0.0011 3.8E-08 55.3 2.1 23 1-23 25-47 (208)
314 3ney_A 55 kDa erythrocyte memb 96.4 0.0016 5.6E-08 53.8 2.8 23 1-23 22-44 (197)
315 2px0_A Flagellar biosynthesis 96.4 0.0052 1.8E-07 54.2 6.3 32 1-32 108-143 (296)
316 1lvg_A Guanylate kinase, GMP k 96.4 0.0015 5.3E-08 54.0 2.6 23 1-23 7-29 (198)
317 1htw_A HI0065; nucleotide-bind 96.4 0.0017 5.9E-08 51.7 2.8 22 1-22 36-57 (158)
318 3bgw_A DNAB-like replicative h 96.3 0.019 6.5E-07 53.7 10.3 32 1-32 200-234 (444)
319 4a1f_A DNAB helicase, replicat 96.3 0.019 6.6E-07 51.5 9.9 31 1-31 49-82 (338)
320 2qmh_A HPR kinase/phosphorylas 96.3 0.0013 4.3E-08 54.2 1.9 30 1-31 37-66 (205)
321 3b6e_A Interferon-induced heli 96.3 0.01 3.5E-07 49.1 7.6 22 1-22 51-72 (216)
322 1gtv_A TMK, thymidylate kinase 96.3 0.00074 2.5E-08 56.3 0.4 24 1-24 3-26 (214)
323 3eph_A TRNA isopentenyltransfe 96.3 0.0017 5.8E-08 59.5 2.8 31 1-31 5-35 (409)
324 1sxj_E Activator 1 40 kDa subu 96.3 0.0045 1.5E-07 55.8 5.6 66 221-302 131-196 (354)
325 3llm_A ATP-dependent RNA helic 96.3 0.013 4.6E-07 49.6 8.2 19 1-19 79-97 (235)
326 1tf7_A KAIC; homohexamer, hexa 96.3 0.016 5.5E-07 55.4 9.6 71 1-71 284-385 (525)
327 1jr3_A DNA polymerase III subu 96.3 0.0073 2.5E-07 54.7 6.9 64 223-302 118-181 (373)
328 3hdt_A Putative kinase; struct 96.3 0.0021 7.3E-08 54.2 3.0 28 1-28 17-44 (223)
329 1q57_A DNA primase/helicase; d 96.2 0.023 7.9E-07 54.0 10.5 32 1-32 245-280 (503)
330 1x6v_B Bifunctional 3'-phospho 96.2 0.0026 9E-08 61.8 3.8 33 1-33 55-90 (630)
331 1znw_A Guanylate kinase, GMP k 96.2 0.0021 7.3E-08 53.4 2.8 22 2-23 24-45 (207)
332 3thx_B DNA mismatch repair pro 96.2 0.019 6.4E-07 58.4 10.1 20 1-20 676-695 (918)
333 1s96_A Guanylate kinase, GMP k 96.2 0.0022 7.4E-08 54.0 2.8 23 1-23 19-41 (219)
334 2bjv_A PSP operon transcriptio 96.2 0.004 1.4E-07 53.8 4.5 69 224-304 100-182 (265)
335 2gno_A DNA polymerase III, gam 96.2 0.0084 2.9E-07 53.1 6.6 82 199-302 61-142 (305)
336 1sky_E F1-ATPase, F1-ATP synth 96.2 0.011 3.7E-07 55.3 7.6 22 1-22 154-175 (473)
337 1w4r_A Thymidine kinase; type 96.2 0.0044 1.5E-07 50.9 4.3 31 2-32 24-57 (195)
338 1z6g_A Guanylate kinase; struc 96.2 0.0024 8.1E-08 53.7 2.8 22 1-22 26-47 (218)
339 3e70_C DPA, signal recognition 96.1 0.012 4E-07 52.7 7.4 22 1-22 132-153 (328)
340 2jeo_A Uridine-cytidine kinase 96.1 0.0024 8.3E-08 54.6 2.7 25 1-25 28-52 (245)
341 1sxj_B Activator 1 37 kDa subu 96.1 0.0045 1.5E-07 54.9 4.5 63 224-302 107-169 (323)
342 2oap_1 GSPE-2, type II secreti 96.1 0.0031 1E-07 60.1 3.5 67 1-67 263-343 (511)
343 4eaq_A DTMP kinase, thymidylat 96.1 0.0027 9.3E-08 53.8 2.7 23 1-23 29-51 (229)
344 1a7j_A Phosphoribulokinase; tr 96.1 0.0017 5.9E-08 57.2 1.5 35 1-35 8-45 (290)
345 2yhs_A FTSY, cell division pro 96.0 0.076 2.6E-06 50.0 12.6 22 1-22 296-317 (503)
346 1j8m_F SRP54, signal recogniti 95.9 0.012 4E-07 52.0 6.2 32 1-32 101-135 (297)
347 2j37_W Signal recognition part 95.9 0.016 5.5E-07 54.9 7.6 31 1-31 104-137 (504)
348 4b3f_X DNA-binding protein smu 95.9 0.0057 1.9E-07 60.2 4.6 30 2-31 209-241 (646)
349 1ls1_A Signal recognition part 95.9 0.02 7E-07 50.4 7.7 66 2-67 102-190 (295)
350 3k1j_A LON protease, ATP-depen 95.9 0.0056 1.9E-07 59.7 4.4 24 1-24 63-86 (604)
351 3thx_A DNA mismatch repair pro 95.9 0.036 1.2E-06 56.5 10.4 20 1-20 665-684 (934)
352 3n70_A Transport activator; si 95.9 0.0065 2.2E-07 47.4 3.9 59 224-297 76-142 (145)
353 2xau_A PRE-mRNA-splicing facto 95.8 0.021 7.1E-07 57.3 8.3 21 1-21 112-132 (773)
354 1tf7_A KAIC; homohexamer, hexa 95.8 0.04 1.4E-06 52.7 9.8 18 1-18 42-59 (525)
355 1zu4_A FTSY; GTPase, signal re 95.8 0.025 8.5E-07 50.4 7.8 31 1-31 108-141 (320)
356 3lnc_A Guanylate kinase, GMP k 95.7 0.0026 9E-08 53.8 1.3 23 1-23 30-53 (231)
357 3p32_A Probable GTPase RV1496/ 95.7 0.022 7.4E-07 51.6 7.3 30 1-30 82-114 (355)
358 3aez_A Pantothenate kinase; tr 95.7 0.0045 1.5E-07 55.1 2.6 23 1-23 93-115 (312)
359 2v9p_A Replication protein E1; 95.6 0.0047 1.6E-07 54.6 2.5 23 1-23 129-151 (305)
360 1xjc_A MOBB protein homolog; s 95.6 0.0054 1.9E-07 49.3 2.6 30 1-30 7-39 (169)
361 2gxq_A Heat resistant RNA depe 95.6 0.069 2.4E-06 43.7 9.6 21 1-21 41-62 (207)
362 4i1u_A Dephospho-COA kinase; s 95.6 0.0057 2E-07 51.0 2.8 29 1-30 12-40 (210)
363 3tqc_A Pantothenate kinase; bi 95.6 0.0053 1.8E-07 54.7 2.8 23 1-23 95-117 (321)
364 1odf_A YGR205W, hypothetical 3 95.6 0.0053 1.8E-07 54.0 2.6 23 1-23 34-56 (290)
365 1m8p_A Sulfate adenylyltransfe 95.6 0.0062 2.1E-07 58.8 3.3 32 1-32 399-434 (573)
366 1np6_A Molybdopterin-guanine d 95.6 0.0058 2E-07 49.4 2.6 22 1-22 9-30 (174)
367 2xxa_A Signal recognition part 95.6 0.027 9.3E-07 52.4 7.5 67 1-67 103-193 (433)
368 3kta_A Chromosome segregation 95.5 0.0067 2.3E-07 49.1 3.0 23 2-24 30-52 (182)
369 4a82_A Cystic fibrosis transme 95.5 0.035 1.2E-06 53.8 8.4 21 2-22 371-391 (578)
370 2onk_A Molybdate/tungstate ABC 95.5 0.0056 1.9E-07 52.3 2.5 22 2-23 28-49 (240)
371 3tif_A Uncharacterized ABC tra 95.5 0.0046 1.6E-07 52.6 1.9 22 2-23 35-56 (235)
372 3qf4_B Uncharacterized ABC tra 95.5 0.042 1.4E-06 53.4 8.9 21 2-22 385-405 (598)
373 1cr0_A DNA primase/helicase; R 95.5 0.0052 1.8E-07 54.1 2.2 22 1-22 38-59 (296)
374 1rj9_A FTSY, signal recognitio 95.4 0.0063 2.2E-07 53.9 2.6 22 1-22 105-126 (304)
375 3b85_A Phosphate starvation-in 95.4 0.0046 1.6E-07 51.6 1.6 20 2-21 26-45 (208)
376 1p5z_B DCK, deoxycytidine kina 95.4 0.0031 1.1E-07 54.5 0.5 23 1-23 27-49 (263)
377 1sq5_A Pantothenate kinase; P- 95.4 0.0061 2.1E-07 54.1 2.4 23 1-23 83-105 (308)
378 2ocp_A DGK, deoxyguanosine kin 95.4 0.0082 2.8E-07 51.1 3.1 23 1-23 5-27 (241)
379 2j9r_A Thymidine kinase; TK1, 95.4 0.073 2.5E-06 44.3 8.8 30 2-31 32-64 (214)
380 2pcj_A ABC transporter, lipopr 95.4 0.0047 1.6E-07 52.1 1.6 22 2-23 34-55 (224)
381 4edh_A DTMP kinase, thymidylat 95.4 0.012 4.1E-07 49.2 4.0 29 1-29 9-40 (213)
382 1p9r_A General secretion pathw 95.3 0.0077 2.6E-07 55.8 2.9 23 1-23 170-192 (418)
383 3b9q_A Chloroplast SRP recepto 95.3 0.0073 2.5E-07 53.5 2.6 22 1-22 103-124 (302)
384 1sgw_A Putative ABC transporte 95.3 0.006 2E-07 51.1 2.0 22 2-23 39-60 (214)
385 2cbz_A Multidrug resistance-as 95.3 0.0058 2E-07 52.0 1.9 21 2-22 35-55 (237)
386 2f9l_A RAB11B, member RAS onco 95.3 0.0081 2.8E-07 49.3 2.6 22 1-22 8-29 (199)
387 3tqf_A HPR(Ser) kinase; transf 95.3 0.01 3.5E-07 47.6 3.1 25 1-26 19-43 (181)
388 3k53_A Ferrous iron transport 95.2 0.02 6.7E-07 49.7 5.1 21 1-21 6-26 (271)
389 1b0u_A Histidine permease; ABC 95.2 0.0064 2.2E-07 52.6 2.0 22 2-23 36-57 (262)
390 3qf4_A ABC transporter, ATP-bi 95.2 0.054 1.9E-06 52.5 8.7 21 2-22 373-393 (587)
391 1lw7_A Transcriptional regulat 95.2 0.0094 3.2E-07 54.2 3.1 24 2-25 174-197 (365)
392 3v9p_A DTMP kinase, thymidylat 95.2 0.01 3.6E-07 50.1 3.1 22 1-22 28-49 (227)
393 3gfo_A Cobalt import ATP-bindi 95.2 0.0066 2.3E-07 52.9 2.0 22 2-23 38-59 (275)
394 1oix_A RAS-related protein RAB 95.2 0.0077 2.6E-07 49.2 2.3 22 1-22 32-53 (191)
395 2f1r_A Molybdopterin-guanine d 95.2 0.0053 1.8E-07 49.5 1.2 23 1-23 5-27 (171)
396 3co5_A Putative two-component 95.2 0.01 3.5E-07 46.1 2.8 60 224-297 75-140 (143)
397 2d2e_A SUFC protein; ABC-ATPas 95.2 0.0082 2.8E-07 51.5 2.4 20 2-21 33-52 (250)
398 3sop_A Neuronal-specific septi 95.2 0.0075 2.6E-07 52.5 2.2 23 1-23 5-27 (270)
399 1g6h_A High-affinity branched- 95.2 0.0068 2.3E-07 52.3 1.9 22 2-23 37-58 (257)
400 3tmk_A Thymidylate kinase; pho 95.2 0.013 4.6E-07 49.0 3.6 26 1-26 8-33 (216)
401 2zu0_C Probable ATP-dependent 95.2 0.0086 2.9E-07 52.0 2.5 20 2-21 50-69 (267)
402 1ji0_A ABC transporter; ATP bi 95.1 0.0072 2.5E-07 51.6 1.9 22 2-23 36-57 (240)
403 1mv5_A LMRA, multidrug resista 95.1 0.0074 2.5E-07 51.6 2.0 22 1-22 31-52 (243)
404 2olj_A Amino acid ABC transpor 95.1 0.0074 2.5E-07 52.2 2.0 22 2-23 54-75 (263)
405 3fvq_A Fe(3+) IONS import ATP- 95.1 0.0075 2.6E-07 54.6 2.1 21 2-22 34-54 (359)
406 2pze_A Cystic fibrosis transme 95.1 0.0076 2.6E-07 51.0 2.0 22 2-23 38-59 (229)
407 4g1u_C Hemin import ATP-bindin 95.1 0.0075 2.6E-07 52.3 1.9 22 2-23 41-62 (266)
408 1vec_A ATP-dependent RNA helic 95.1 0.063 2.1E-06 44.0 7.6 16 1-16 43-58 (206)
409 2ff7_A Alpha-hemolysin translo 95.1 0.0076 2.6E-07 51.7 1.9 22 2-23 39-60 (247)
410 2qi9_C Vitamin B12 import ATP- 95.1 0.0079 2.7E-07 51.6 2.0 22 2-23 30-51 (249)
411 2f7s_A C25KG, RAS-related prot 95.1 0.1 3.4E-06 43.1 8.9 21 1-21 28-48 (217)
412 2dyk_A GTP-binding protein; GT 95.0 0.011 3.7E-07 46.2 2.7 22 1-22 4-25 (161)
413 1f2t_A RAD50 ABC-ATPase; DNA d 95.0 0.012 4.1E-07 46.2 2.8 21 2-22 27-47 (149)
414 1g8f_A Sulfate adenylyltransfe 95.0 0.0093 3.2E-07 56.6 2.5 24 1-24 398-421 (511)
415 1z47_A CYSA, putative ABC-tran 95.0 0.0095 3.2E-07 53.9 2.4 21 2-22 45-65 (355)
416 1vpl_A ABC transporter, ATP-bi 95.0 0.0084 2.9E-07 51.7 2.0 22 2-23 45-66 (256)
417 1bif_A 6-phosphofructo-2-kinas 95.0 0.0054 1.8E-07 57.9 0.8 23 1-23 42-64 (469)
418 3rlf_A Maltose/maltodextrin im 95.0 0.0099 3.4E-07 54.2 2.5 21 2-22 33-53 (381)
419 2ihy_A ABC transporter, ATP-bi 95.0 0.0085 2.9E-07 52.4 2.0 22 2-23 51-72 (279)
420 3cr8_A Sulfate adenylyltranfer 95.0 0.0082 2.8E-07 57.6 2.0 33 1-33 372-408 (552)
421 2it1_A 362AA long hypothetical 95.0 0.01 3.5E-07 53.8 2.5 21 2-22 33-53 (362)
422 3d31_A Sulfate/molybdate ABC t 95.0 0.0091 3.1E-07 53.9 2.1 21 2-22 30-50 (348)
423 2ixe_A Antigen peptide transpo 95.0 0.0085 2.9E-07 52.1 1.9 22 2-23 49-70 (271)
424 2og2_A Putative signal recogni 95.0 0.011 3.7E-07 53.6 2.6 22 1-22 160-181 (359)
425 2ghi_A Transport protein; mult 95.0 0.0086 2.9E-07 51.8 1.9 56 223-297 172-227 (260)
426 2yyz_A Sugar ABC transporter, 95.0 0.01 3.4E-07 53.8 2.4 21 2-22 33-53 (359)
427 2gza_A Type IV secretion syste 94.9 0.0082 2.8E-07 54.6 1.8 23 1-23 178-200 (361)
428 1in4_A RUVB, holliday junction 94.9 0.036 1.2E-06 49.6 6.0 68 224-302 102-183 (334)
429 1z2a_A RAS-related protein RAB 94.9 0.012 4.2E-07 46.3 2.6 21 1-21 8-28 (168)
430 1v43_A Sugar-binding transport 94.9 0.011 3.7E-07 53.9 2.5 21 2-22 41-61 (372)
431 2nq2_C Hypothetical ABC transp 94.9 0.0091 3.1E-07 51.4 1.9 22 2-23 35-56 (253)
432 2yz2_A Putative ABC transporte 94.9 0.0091 3.1E-07 51.8 1.9 22 2-23 37-58 (266)
433 1t6n_A Probable ATP-dependent 94.9 0.31 1.1E-05 40.2 11.4 21 1-21 54-74 (220)
434 1qde_A EIF4A, translation init 94.9 0.19 6.4E-06 41.7 10.0 21 1-21 54-75 (224)
435 2wji_A Ferrous iron transport 94.9 0.012 4.1E-07 46.6 2.4 21 1-21 6-26 (165)
436 3vkw_A Replicase large subunit 94.8 0.024 8.3E-07 52.6 4.7 20 2-21 165-184 (446)
437 1kao_A RAP2A; GTP-binding prot 94.8 0.013 4.6E-07 45.9 2.7 22 1-22 6-27 (167)
438 1g29_1 MALK, maltose transport 94.8 0.011 3.8E-07 53.8 2.4 21 2-22 33-53 (372)
439 2ffh_A Protein (FFH); SRP54, s 94.8 0.069 2.4E-06 49.4 7.8 31 1-31 101-134 (425)
440 1nrj_B SR-beta, signal recogni 94.8 0.013 4.3E-07 48.8 2.6 22 1-22 15-36 (218)
441 2zej_A Dardarin, leucine-rich 94.8 0.011 3.6E-07 47.9 2.0 20 1-20 5-24 (184)
442 1q0u_A Bstdead; DEAD protein, 94.8 0.13 4.3E-06 42.7 8.8 17 1-17 44-60 (219)
443 2ged_A SR-beta, signal recogni 94.8 0.014 4.7E-07 47.4 2.7 22 1-22 51-72 (193)
444 2pl3_A Probable ATP-dependent 94.8 0.14 4.7E-06 43.0 9.1 16 1-16 65-80 (236)
445 2pjz_A Hypothetical protein ST 94.8 0.01 3.6E-07 51.3 2.0 21 2-22 34-54 (263)
446 3fe2_A Probable ATP-dependent 94.8 0.12 4.2E-06 43.6 8.7 16 1-16 69-84 (242)
447 1ek0_A Protein (GTP-binding pr 94.7 0.014 5E-07 45.9 2.6 22 1-22 6-27 (170)
448 1sxj_A Activator 1 95 kDa subu 94.7 0.024 8.2E-07 54.1 4.5 67 223-303 147-213 (516)
449 1z0j_A RAB-22, RAS-related pro 94.7 0.015 5.2E-07 45.8 2.7 22 1-22 9-30 (170)
450 1u8z_A RAS-related protein RAL 94.7 0.015 5.1E-07 45.6 2.6 21 1-21 7-27 (168)
451 2ce2_X GTPase HRAS; signaling 94.7 0.013 4.4E-07 45.8 2.2 22 1-22 6-27 (166)
452 4f4c_A Multidrug resistance pr 94.7 0.094 3.2E-06 55.8 9.3 22 2-23 448-469 (1321)
453 3a1s_A Iron(II) transport prot 94.7 0.044 1.5E-06 47.1 5.7 21 1-21 8-28 (258)
454 1wms_A RAB-9, RAB9, RAS-relate 94.7 0.015 5.3E-07 46.2 2.7 21 1-21 10-30 (177)
455 2nzj_A GTP-binding protein REM 94.7 0.015 5E-07 46.2 2.5 21 1-21 7-27 (175)
456 3lv8_A DTMP kinase, thymidylat 94.7 0.013 4.4E-07 49.8 2.2 22 1-22 30-51 (236)
457 1z08_A RAS-related protein RAB 94.6 0.016 5.4E-07 45.7 2.6 21 1-21 9-29 (170)
458 1oxx_K GLCV, glucose, ABC tran 94.6 0.0094 3.2E-07 53.9 1.4 21 2-22 35-55 (353)
459 2p67_A LAO/AO transport system 94.6 0.067 2.3E-06 48.0 7.0 22 1-22 59-80 (341)
460 3iuy_A Probable ATP-dependent 94.6 0.15 5.2E-06 42.5 8.9 16 1-16 60-75 (228)
461 1ky3_A GTP-binding protein YPT 94.6 0.016 5.5E-07 46.2 2.7 22 1-22 11-32 (182)
462 2fwr_A DNA repair protein RAD2 94.6 0.043 1.5E-06 51.4 6.0 32 1-32 111-142 (472)
463 2gk6_A Regulator of nonsense t 94.6 0.014 4.8E-07 57.1 2.6 22 1-22 198-219 (624)
464 3ld9_A DTMP kinase, thymidylat 94.5 0.016 5.6E-07 48.7 2.6 24 1-24 24-47 (223)
465 1hv8_A Putative ATP-dependent 94.5 0.048 1.7E-06 48.8 5.9 31 1-31 47-82 (367)
466 1c1y_A RAS-related protein RAP 94.5 0.017 5.9E-07 45.3 2.6 21 1-21 6-26 (167)
467 3b1v_A Ferrous iron uptake tra 94.5 0.05 1.7E-06 47.2 5.7 21 1-21 6-26 (272)
468 3iby_A Ferrous iron transport 94.5 0.041 1.4E-06 47.3 5.1 21 1-21 4-24 (256)
469 1r2q_A RAS-related protein RAB 94.5 0.018 6E-07 45.4 2.6 21 1-21 9-29 (170)
470 1g16_A RAS-related protein SEC 94.5 0.015 5.2E-07 45.8 2.2 21 1-21 6-26 (170)
471 1r8s_A ADP-ribosylation factor 94.5 0.019 6.4E-07 45.0 2.7 21 1-21 3-23 (164)
472 1ewq_A DNA mismatch repair pro 94.5 0.054 1.8E-06 54.0 6.5 21 1-21 579-599 (765)
473 2wjg_A FEOB, ferrous iron tran 94.5 0.017 5.8E-07 46.6 2.4 21 1-21 10-30 (188)
474 3q85_A GTP-binding protein REM 94.4 0.017 5.9E-07 45.5 2.4 20 1-20 5-24 (169)
475 2erx_A GTP-binding protein DI- 94.4 0.018 6.2E-07 45.4 2.5 21 1-21 6-26 (172)
476 3bc1_A RAS-related protein RAB 94.4 0.019 6.4E-07 46.4 2.6 21 1-21 14-34 (195)
477 3gd7_A Fusion complex of cysti 94.4 0.014 4.9E-07 53.4 2.1 21 2-22 51-71 (390)
478 3tbk_A RIG-I helicase domain; 94.4 0.32 1.1E-05 46.1 11.7 32 1-32 22-61 (555)
479 2v3c_C SRP54, signal recogniti 94.4 0.016 5.3E-07 54.0 2.3 32 1-32 102-136 (432)
480 4tmk_A Protein (thymidylate ki 94.4 0.017 5.7E-07 48.3 2.2 22 1-22 6-27 (213)
481 2hxs_A RAB-26, RAS-related pro 94.4 0.018 6E-07 45.9 2.3 21 1-21 9-29 (178)
482 1upt_A ARL1, ADP-ribosylation 94.4 0.02 6.8E-07 45.2 2.6 21 1-21 10-30 (171)
483 1wb9_A DNA mismatch repair pro 94.3 0.055 1.9E-06 54.3 6.2 21 1-21 610-630 (800)
484 1z0f_A RAB14, member RAS oncog 94.3 0.02 6.9E-07 45.5 2.6 22 1-22 18-39 (179)
485 2oil_A CATX-8, RAS-related pro 94.3 0.02 7E-07 46.4 2.6 22 1-22 28-49 (193)
486 1dek_A Deoxynucleoside monopho 94.3 0.019 6.6E-07 48.9 2.5 26 1-26 4-29 (241)
487 3con_A GTPase NRAS; structural 94.3 0.021 7.1E-07 46.2 2.6 22 1-22 24-45 (190)
488 2o8b_B DNA mismatch repair pro 94.3 0.15 5.3E-06 52.5 9.5 19 1-19 792-810 (1022)
489 4dsu_A GTPase KRAS, isoform 2B 94.3 0.022 7.4E-07 45.8 2.7 22 1-22 7-28 (189)
490 2efe_B Small GTP-binding prote 94.2 0.022 7.4E-07 45.5 2.6 21 1-21 15-35 (181)
491 2y8e_A RAB-protein 6, GH09086P 94.2 0.019 6.5E-07 45.7 2.2 21 1-21 17-37 (179)
492 2bbs_A Cystic fibrosis transme 94.2 0.014 4.8E-07 51.3 1.5 21 2-22 68-88 (290)
493 3q72_A GTP-binding protein RAD 94.2 0.017 5.7E-07 45.4 1.9 20 1-20 5-24 (166)
494 3clv_A RAB5 protein, putative; 94.2 0.022 7.5E-07 46.3 2.7 21 1-21 10-30 (208)
495 1m7b_A RND3/RHOE small GTP-bin 94.2 0.019 6.5E-07 46.3 2.2 21 1-21 10-30 (184)
496 2fn4_A P23, RAS-related protei 94.2 0.02 6.7E-07 45.7 2.3 21 1-21 12-32 (181)
497 3tui_C Methionine import ATP-b 94.2 0.02 6.8E-07 51.9 2.5 22 2-23 58-79 (366)
498 2a9k_A RAS-related protein RAL 94.2 0.023 7.7E-07 45.6 2.6 21 1-21 21-41 (187)
499 2lkc_A Translation initiation 94.2 0.022 7.7E-07 45.3 2.6 21 1-21 11-31 (178)
500 2qm8_A GTPase/ATPase; G protei 94.2 0.021 7.3E-07 51.3 2.6 22 1-22 58-79 (337)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.8e-60 Score=472.14 Aligned_cols=299 Identities=39% Similarity=0.642 Sum_probs=242.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
||||||||||||++|+++|+++|.+++.++++++.+++.|+++..++.+|..++.++|+||||||+|.++++++......
T Consensus 241 ILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~ 320 (806)
T 3cf2_A 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320 (806)
T ss_dssp EEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999887766677
Q ss_pred HHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHH
Q psy4538 81 SRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIE 158 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~ 158 (343)
..+++.+|+..|++... ..+|+||++||+++.+|++++| ||+..|+++.|+.++|.+||+.++++.... ++.++.
T Consensus 321 ~~riv~~LL~~mdg~~~--~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~ 397 (806)
T 3cf2_A 321 ERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLE 397 (806)
T ss_dssp HHHHHHHHHTHHHHCCG--GGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHH
T ss_pred HHHHHHHHHHHHhcccc--cCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHH
Confidence 78899999999999865 5679999999999999999999 999999999999999999999988775433 445799
Q ss_pred HHHHHCCCCCHHHHHHHHHHHhcccccccccc----c--c--cccCCcccChhHHHHHHHhcC-----------------
Q psy4538 159 EVGRMTTDFSGADMASLCREASLGPVRSIDLS----R--I--DALDVRPISIDDFRDALKTVR----------------- 213 (343)
Q Consensus 159 ~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~----~--~--~~~~~~~i~~~d~~~a~~~~~----------------- 213 (343)
.+|..|.||+++||.++|++|++.|+++.... . . .......++.+||..+++.++
T Consensus 398 ~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~ 477 (806)
T 3cf2_A 398 QVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWE 477 (806)
T ss_dssp HHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCST
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHH
Confidence 99999999999999999999988887653110 0 0 000112355555555555443
Q ss_pred -----------------------------------------CCccccccc------------------------------
Q psy4538 214 -----------------------------------------PSVCQADFV------------------------------ 222 (343)
Q Consensus 214 -----------------------------------------ps~~~k~~~------------------------------ 222 (343)
|++|||+++
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~ 557 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEA 557 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHH
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHH
Confidence 556666652
Q ss_pred -----------cCcceEeecchhhhhcccCCC---cchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH
Q psy4538 223 -----------HQPSIIFIDEIDSLLCQRSDQ---ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR 288 (343)
Q Consensus 223 -----------~~p~ilf~DEiDsl~~~R~~~---~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR 288 (343)
++||||||||+|+++++|+.. .+++++|+++|||+||||+++..+ |+||||||+|+.||||++|
T Consensus 558 ~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~--V~vi~aTN~p~~lD~AllR 635 (806)
T 3cf2_A 558 NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN--VFIIGATNRPDIIDPAILR 635 (806)
T ss_dssp HHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSS--EEEECC-CCSSSSCHHHHS
T ss_pred HHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCC--EEEEEeCCCchhCCHhHcC
Confidence 369999999999999999743 456789999999999999998554 9999999999999999999
Q ss_pred --hhhceEeccCCCCCCC
Q psy4538 289 --RLVKRLYIPLPDEQKV 304 (343)
Q Consensus 289 --R~d~~i~~~~P~~~~r 304 (343)
|||++||||+||.++|
T Consensus 636 pgRfd~~i~v~lPd~~~R 653 (806)
T 3cf2_A 636 PGRLDQLIYIPLPDEKSR 653 (806)
T ss_dssp TTTSCCEEEC-----CHH
T ss_pred CCcceEEEEECCcCHHHH
Confidence 9999999999999865
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=2.6e-41 Score=340.50 Aligned_cols=299 Identities=39% Similarity=0.636 Sum_probs=238.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
+||+||||||||++|+++|.+++.+++.+++.++.+.+.++....++.+|..+....|+++||||+|.+..++.......
T Consensus 241 vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~ 320 (806)
T 1ypw_A 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320 (806)
T ss_dssp EEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHH
T ss_pred EEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchH
Confidence 58999999999999999999999999999999999999999999999999999888999999999999998876655566
Q ss_pred HHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHH
Q psy4538 81 SRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIE 158 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~ 158 (343)
..++...++..+++... ...+++|++||.++.+++.+++ ||...+.++.|+.++|.++++.++..... ..+..+.
T Consensus 321 ~~~~~~~Ll~ll~g~~~--~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~~l~ 397 (806)
T 1ypw_A 321 ERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDLE 397 (806)
T ss_dssp HHHHHHHHHHHHHSSCT--TSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCC-CTTCCTH
T ss_pred HHHHHHHHHHHhhhhcc--cccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCC-cccchhH
Confidence 77888899999988765 4678999999999999999998 99999999999999999999988876543 3444688
Q ss_pred HHHHHCCCCCHHHHHHHHHHHhcccccccccc------cc--cccCCcccChhHHHHHHHh-------------------
Q psy4538 159 EVGRMTTDFSGADMASLCREASLGPVRSIDLS------RI--DALDVRPISIDDFRDALKT------------------- 211 (343)
Q Consensus 159 ~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~------~~--~~~~~~~i~~~d~~~a~~~------------------- 211 (343)
.++..+.|++++++..+++++...+.++.... .. .......++.+|+..++..
T Consensus 398 ~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~ 477 (806)
T 1ypw_A 398 QVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWE 477 (806)
T ss_dssp HHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSC
T ss_pred HHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCchhhhhhcccCcccccc
Confidence 99999999999999999998876655432100 00 0001112222333222222
Q ss_pred ---------------------------------------cCCCccccccc------------------------------
Q psy4538 212 ---------------------------------------VRPSVCQADFV------------------------------ 222 (343)
Q Consensus 212 ---------------------------------------~~ps~~~k~~~------------------------------ 222 (343)
+.|++|||+.+
T Consensus 478 di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~ 557 (806)
T 1ypw_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEA 557 (806)
T ss_dssp SSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSH
T ss_pred ccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHH
Confidence 12567777642
Q ss_pred -----------cCcceEeecchhhhhcccCCCc---chhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH
Q psy4538 223 -----------HQPSIIFIDEIDSLLCQRSDQE---NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR 288 (343)
Q Consensus 223 -----------~~p~ilf~DEiDsl~~~R~~~~---~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR 288 (343)
..||||||||+|+++++|+... ++..++++++||++|||+....+ |+||+|||+|+.||||++|
T Consensus 558 ~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~--v~vI~tTN~~~~ld~allr 635 (806)
T 1ypw_A 558 NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN--VFIIGATNRPDIIDPAILR 635 (806)
T ss_dssp HHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------C--CBCCCCCBSCGGGSCTTSS
T ss_pred HHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCC--eEEEEecCCcccCCHHHhC
Confidence 2589999999999999997543 35679999999999999987444 9999999999999999999
Q ss_pred --hhhceEeccCCCCCCC
Q psy4538 289 --RLVKRLYIPLPDEQKV 304 (343)
Q Consensus 289 --R~d~~i~~~~P~~~~r 304 (343)
|||+.|+|++|+.++|
T Consensus 636 pgRf~~~i~~~~p~~~~r 653 (806)
T 1ypw_A 636 PGRLDQLIYIPLPDEKSR 653 (806)
T ss_dssp GGGTTSCCCCCCCCCSHH
T ss_pred ccccCceeecCCCCHHHH
Confidence 9999999999998753
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-39 Score=293.11 Aligned_cols=203 Identities=36% Similarity=0.570 Sum_probs=183.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCc---
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQE--- 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~--- 77 (343)
+|||||||||||++|+++|++++.+|+.++++++.++|.|+++..++.+|..++..+||||||||+|.+++++..+.
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~ 264 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGG 264 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGG
T ss_pred eEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999998765432
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
+....+.+..++..|+++.. ...|+||++||+++.+|++++| ||+..|+++.|+.++|.+||+.++++.... ++.
T Consensus 265 ~~~~~~~l~~lL~~lDg~~~--~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dv 341 (405)
T 4b4t_J 265 DSEVQRTMLELLNQLDGFET--SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGI 341 (405)
T ss_dssp GGHHHHHHHHHHHHHHTTTC--CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSC
T ss_pred cHHHHHHHHHHHHhhhccCC--CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccC
Confidence 34567788999999999875 6679999999999999999999 999999999999999999999999886543 344
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCCC
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRPS 215 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ps 215 (343)
++..+|+.|.|||++||.++|++|++.|+++ ....|+.+||..|++++.+.
T Consensus 342 dl~~lA~~t~G~SGADi~~l~~eA~~~Air~---------~~~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 342 NLRKVAEKMNGCSGADVKGVCTEAGMYALRE---------RRIHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp CHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT---------TCSBCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHHHhCc
Confidence 7999999999999999999999999999876 45679999999999987654
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-38 Score=290.94 Aligned_cols=208 Identities=35% Similarity=0.542 Sum_probs=186.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCc---
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQE--- 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~--- 77 (343)
||||||||||||++|+++|++++.+|+.++++++.++|.|++++.++.+|..++..+||||||||+|.++.++....
T Consensus 219 vLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~ 298 (437)
T 4b4t_I 219 VILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGG 298 (437)
T ss_dssp EEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSS
T ss_pred CceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999998875332
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
.....+.+..++..+++... ...++||+|||+++.+|++++| ||+..|+|+.|+.++|.+||+.++++.... ++.
T Consensus 299 ~~~~~~~l~~LL~~lDg~~~--~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-~dv 375 (437)
T 4b4t_I 299 EREIQRTMLELLNQLDGFDD--RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-EDV 375 (437)
T ss_dssp CCHHHHHHHHHHHHHHHCCC--SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC-SCC
T ss_pred cHHHHHHHHHHHHHhhCcCC--CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC-CcC
Confidence 33456778899999998765 5679999999999999999999 999999999999999999999999876433 344
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCCCccccc
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRPSVCQAD 220 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ps~~~k~ 220 (343)
+++.+|+.|.|||++||.++|++|++.|+++ ....|+.+||..|++++.|+...++
T Consensus 376 dl~~LA~~T~GfSGADI~~l~~eA~~~Air~---------~~~~It~eDf~~Al~rv~~~~~~e~ 431 (437)
T 4b4t_I 376 NLETLVTTKDDLSGADIQAMCTEAGLLALRE---------RRMQVTAEDFKQAKERVMKNKVEEN 431 (437)
T ss_dssp CHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT---------TCSCBCHHHHHHHHHHHHHHHCCCS
T ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc---------CCCccCHHHHHHHHHHHhCCCChhh
Confidence 7999999999999999999999999999876 4567999999999999988766554
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-38 Score=291.87 Aligned_cols=205 Identities=39% Similarity=0.613 Sum_probs=185.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCch--
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQEN-- 78 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~-- 78 (343)
+|||||||||||++|+++|++++.+|+.++++++.++|.|++++.++.+|..++..+||||||||+|.+++++.....
T Consensus 218 vLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~ 297 (434)
T 4b4t_M 218 ALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSG 297 (434)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGT
T ss_pred eEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999988765433
Q ss_pred -hHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 79 -ETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 79 -~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
....+.+..++..+++... ..+|+||++||+++.+|++++| ||+..|+|+.|+.++|.+||+.++++.... ++.
T Consensus 298 ~~~~~~~~~~lL~~ldg~~~--~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dv 374 (434)
T 4b4t_M 298 DREVQRTMLELLNQLDGFSS--DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDI 374 (434)
T ss_dssp THHHHHHHHHHHHHHTTSCS--SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCC
T ss_pred chHHHHHHHHHHHHhhccCC--CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcC
Confidence 2455677889999999875 5679999999999999999988 999999999999999999999999886433 334
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCCCcc
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRPSVC 217 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ps~~ 217 (343)
++..+|+.|.|||++||.++|++|++.|+++ ....|+.+||..|+.+++|+..
T Consensus 375 dl~~lA~~t~G~sGADi~~l~~eA~~~a~r~---------~~~~i~~~Df~~Al~~v~~~~~ 427 (434)
T 4b4t_M 375 NWQELARSTDEFNGAQLKAVTVEAGMIALRN---------GQSSVKHEDFVEGISEVQARKS 427 (434)
T ss_dssp CHHHHHHHCSSCCHHHHHHHHHHHHHHHHHH---------TCSSBCHHHHHHHHHSCSSSCC
T ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHHHhCCCC
Confidence 7899999999999999999999999999876 4567999999999999999754
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-37 Score=287.91 Aligned_cols=204 Identities=37% Similarity=0.579 Sum_probs=183.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCC---c
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQ---E 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~---~ 77 (343)
+|||||||||||++|+++|++++.+|+.++++++.++|.|+++..++.+|..++..+||||||||+|.++.++... .
T Consensus 218 vLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~ 297 (437)
T 4b4t_L 218 VLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSA 297 (437)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSS
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999877433 2
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
+....+.+..++..+++... ...++||++||+++.+|++++| ||+..|+|+.|+.++|.+||+.++++.... ++.
T Consensus 298 ~~~~~~~l~~lL~~lDg~~~--~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~ 374 (437)
T 4b4t_L 298 DREIQRTLMELLTQMDGFDN--LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEF 374 (437)
T ss_dssp TTHHHHHHHHHHHHHHSSSC--TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCC
T ss_pred chHHHHHHHHHHHHhhcccC--CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-ccc
Confidence 34456778899999999875 5679999999999999999998 799999999999999999999999876433 345
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCCCc
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRPSV 216 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ps~ 216 (343)
++..+|+.|.|||++||.++|++|++.|+++ ....|+.+||..|++++.|+.
T Consensus 375 dl~~lA~~t~G~sGADi~~l~~eA~~~air~---------~~~~i~~~d~~~Al~~v~~~~ 426 (437)
T 4b4t_L 375 DFEAAVKMSDGFNGADIRNCATEAGFFAIRD---------DRDHINPDDLMKAVRKVAEVK 426 (437)
T ss_dssp CHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHHHHHTC
T ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc---------CCCCCCHHHHHHHHHHHHhcc
Confidence 7999999999999999999999999999876 456799999999999887753
No 7
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-37 Score=282.91 Aligned_cols=203 Identities=35% Similarity=0.553 Sum_probs=181.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCc---
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQE--- 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~--- 77 (343)
||||||||||||++|+++|++++.+|+.++++++.++|.|++++.++.+|..++..+||||||||+|.++.++....
T Consensus 246 ILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~ 325 (467)
T 4b4t_H 246 ILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGG 325 (467)
T ss_dssp EEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGG
T ss_pred eEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999998875432
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
.....+....++..+++... ...|+||++||+++.+|++++| ||+..|+|+.|+.++|.+||+.++++.... .+.
T Consensus 326 ~~~~~~~l~~lL~~lDg~~~--~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dv 402 (467)
T 4b4t_H 326 DNEVQRTMLELITQLDGFDP--RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGI 402 (467)
T ss_dssp GGHHHHHHHHHHHHHHSSCC--TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSC
T ss_pred cHHHHHHHHHHHHHhhccCC--CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-CCC
Confidence 33456677888999998765 6679999999999999999999 999999999999999999999999876433 334
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCCC
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRPS 215 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ps 215 (343)
++..||+.|.|||++||.++|++|++.|+++ ....++.+||..|+.++.++
T Consensus 403 dl~~LA~~T~GfSGADI~~l~~eAa~~Air~---------~~~~it~~Df~~Al~kV~~g 453 (467)
T 4b4t_H 403 RWELISRLCPNSTGAELRSVCTEAGMFAIRA---------RRKVATEKDFLKAVDKVISG 453 (467)
T ss_dssp CHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH---------TCSSBCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc---------CCCccCHHHHHHHHHHHhcC
Confidence 7899999999999999999999999999876 45679999999999887543
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-36 Score=282.74 Aligned_cols=207 Identities=37% Similarity=0.557 Sum_probs=183.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCC---c
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQ---E 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~---~ 77 (343)
+|||||||||||++|+++|++++.+|+.++++++.++|.|+++..++.+|..++..+|||+||||+|.++..+... .
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~ 288 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGS 288 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999876432 3
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEc-CCCHHHHHHHHHHHHhhhCCCCCh
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIP-LPDEQARCEIVTKLLRNITNSLTV 154 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~-~P~~~er~~il~~~l~~~~~~~~~ 154 (343)
+....+.+..|+..++++.. ..+++||+|||+++.+|++++| ||+..|+|| +|+.++|.+||+.++++.... ++
T Consensus 289 ~~~~~r~l~~lL~~ldg~~~--~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~ 365 (428)
T 4b4t_K 289 DREVQRILIELLTQMDGFDQ--STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PE 365 (428)
T ss_dssp CCHHHHHHHHHHHHHHHSCS--SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TT
T ss_pred ChHHHHHHHHHHHHhhCCCC--CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cc
Confidence 34567889999999999876 5579999999999999999999 999999996 899999999999999876432 34
Q ss_pred hhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHh-cCCCcccc
Q psy4538 155 DDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKT-VRPSVCQA 219 (343)
Q Consensus 155 ~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~-~~ps~~~k 219 (343)
.++..+|+.|.|||++||.++|++|++.|+++ ....|+.+||.+|+.+ ++++.+.+
T Consensus 366 ~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~---------~~~~i~~~d~~~A~~~~~~~~~~~~ 422 (428)
T 4b4t_K 366 ADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK---------NRYVILQSDLEEAYATQVKTDNTVD 422 (428)
T ss_dssp CCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHHHSCSCCCSS
T ss_pred cCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC---------CCCCCCHHHHHHHHHHhhCccCCcc
Confidence 57999999999999999999999999999876 4567999999999976 45555443
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.2e-36 Score=298.83 Aligned_cols=218 Identities=38% Similarity=0.651 Sum_probs=148.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCC---c
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQ---E 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~---~ 77 (343)
+|||||||||||++|+++|++++.+|+.++.+++.++|.|++++.++.+|..|+...||||||||+|.++++++.. .
T Consensus 514 vLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~ 593 (806)
T 3cf2_A 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593 (806)
T ss_dssp CEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC----------
T ss_pred EEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999887532 3
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
.....+++++|+.+|++... ...|+||++||+|+.+|++++| ||+..|++++|+.++|.+||+.++++.+.. ++.
T Consensus 594 ~~~~~rv~~~lL~~mdg~~~--~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~ 670 (806)
T 3cf2_A 594 GGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDV 670 (806)
T ss_dssp ----CHHHHHHHHHHHSSCS--SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC-
T ss_pred chHHHHHHHHHHHHHhCCCC--CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCC
Confidence 34567899999999999876 5679999999999999999999 999999999999999999999998876433 445
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhccccccccccc----------------ccccCCcccChhHHHHHHHhcCCCcccc
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSR----------------IDALDVRPISIDDFRDALKTVRPSVCQA 219 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~----------------~~~~~~~~i~~~d~~~a~~~~~ps~~~k 219 (343)
++..||+.|.|||++||.++|++|++.|+++..... ......++|+++||.+|+++++||++.+
T Consensus 671 dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~ 750 (806)
T 3cf2_A 671 DLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN 750 (806)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTTTC----------
T ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCCHH
Confidence 789999999999999999999999999887642211 1112245799999999999999998876
Q ss_pred cc
Q psy4538 220 DF 221 (343)
Q Consensus 220 ~~ 221 (343)
++
T Consensus 751 ~l 752 (806)
T 3cf2_A 751 DI 752 (806)
T ss_dssp --
T ss_pred HH
Confidence 64
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=255.71 Aligned_cols=219 Identities=49% Similarity=0.804 Sum_probs=192.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-CCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchh
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-KATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENE 79 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~ 79 (343)
+|||||||||||++|+++|+++ +.+++.++++++.+.+.|+.+..++.+|..+...+|+||||||+|.+.++++.....
T Consensus 48 iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~ 127 (322)
T 1xwi_A 48 ILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESE 127 (322)
T ss_dssp EEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTT
T ss_pred EEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccch
Confidence 5899999999999999999999 899999999999999999999999999999988899999999999999887766666
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHHH
Q psy4538 80 TSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEE 159 (343)
Q Consensus 80 ~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~ 159 (343)
...++...++..+++... ....+++|++||.++.+++++++||+..++++.|+.++|.+|++.+++..+..+++.++..
T Consensus 128 ~~~~~~~~ll~~ld~~~~-~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~ 206 (322)
T 1xwi_A 128 AARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRE 206 (322)
T ss_dssp HHHHHHHHHHHHHHCSSS-CCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcccc-cCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 778889999999998753 3567999999999999999999999999999999999999999999988777778889999
Q ss_pred HHHHCCCCCHHHHHHHHHHHhcccccccccc--------------------------------------cc--cccCCcc
Q psy4538 160 VGRMTTDFSGADMASLCREASLGPVRSIDLS--------------------------------------RI--DALDVRP 199 (343)
Q Consensus 160 la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~--------------------------------------~~--~~~~~~~ 199 (343)
+++.+.||+++||..+|++|++.++++.... .+ ......+
T Consensus 207 la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (322)
T 1xwi_A 207 LGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPV 286 (322)
T ss_dssp HHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCC
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccccccccchhhccccccccccccCCC
Confidence 9999999999999999999998887663211 00 0112357
Q ss_pred cChhHHHHHHHhcCCCccccc
Q psy4538 200 ISIDDFRDALKTVRPSVCQAD 220 (343)
Q Consensus 200 i~~~d~~~a~~~~~ps~~~k~ 220 (343)
|+++||..|++.++||.++++
T Consensus 287 v~~~df~~al~~~~ps~~~~~ 307 (322)
T 1xwi_A 287 VSMSDMLRSLSNTKPTVNEHD 307 (322)
T ss_dssp BCHHHHHHHHHTCCCSCCHHH
T ss_pred cCHHHHHHHHHhCCCCCCHHH
Confidence 999999999999999988765
No 11
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=3.8e-33 Score=253.89 Aligned_cols=219 Identities=46% Similarity=0.791 Sum_probs=188.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
+|||||||||||++|+++|++++.+++.++++++.+.+.++.+..++.+|..+....|+||||||+|.+..++.......
T Consensus 54 vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~ 133 (322)
T 3eie_A 54 ILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEA 133 (322)
T ss_dssp EEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CC
T ss_pred EEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchH
Confidence 58999999999999999999999999999999999999999999999999999989999999999999988776555556
Q ss_pred HHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHHHH
Q psy4538 81 SRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEV 160 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~l 160 (343)
..++...++..+++... ....+++|++||.++.+++++++||...++++.|+.++|.+||+.++++....+++.++..+
T Consensus 134 ~~~~~~~ll~~l~~~~~-~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~l 212 (322)
T 3eie_A 134 SRRIKTELLVQMNGVGN-DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTL 212 (322)
T ss_dssp THHHHHHHHHHHGGGGT-SCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhccccc-cCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence 67888899999987743 25579999999999999999999999999999999999999999999988777889999999
Q ss_pred HHHCCCCCHHHHHHHHHHHhcccccccccc--------------------------------cc--cccCCcccChhHHH
Q psy4538 161 GRMTTDFSGADMASLCREASLGPVRSIDLS--------------------------------RI--DALDVRPISIDDFR 206 (343)
Q Consensus 161 a~~t~g~s~~dl~~l~~~a~~~a~~~~~~~--------------------------------~~--~~~~~~~i~~~d~~ 206 (343)
++.+.||+++||.++|+.|...++++.... .+ ......+|+.+||.
T Consensus 213 a~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~ 292 (322)
T 3eie_A 213 GAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFL 292 (322)
T ss_dssp HHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHH
Confidence 999999999999999999998887764211 00 01123579999999
Q ss_pred HHHHhcCCCccccc
Q psy4538 207 DALKTVRPSVCQAD 220 (343)
Q Consensus 207 ~a~~~~~ps~~~k~ 220 (343)
.+++.++|+.+.++
T Consensus 293 ~al~~~~ps~~~~~ 306 (322)
T 3eie_A 293 KAIKSTRPTVNEDD 306 (322)
T ss_dssp HHHHHSCCSSCTTH
T ss_pred HHHHhcCCCCCHHH
Confidence 99999999987654
No 12
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=2.3e-32 Score=251.67 Aligned_cols=219 Identities=46% Similarity=0.795 Sum_probs=182.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
+||+||||||||++|+++|++++.+++.+++.++.+.+.+..+..++.+|..+....|+||||||+|.+.+.+.......
T Consensus 87 iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~ 166 (355)
T 2qp9_X 87 ILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEA 166 (355)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTH
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchH
Confidence 58999999999999999999999999999999999999999999999999999888999999999999988766555566
Q ss_pred HHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHHHH
Q psy4538 81 SRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEV 160 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~l 160 (343)
..++...++..+++... ....++||++||.++.+++++++||...+++++|+.++|.+||+.+++..+..+++.++..|
T Consensus 167 ~~~~~~~ll~~l~~~~~-~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~l 245 (355)
T 2qp9_X 167 SRRIKTELLVQMNGVGN-DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTL 245 (355)
T ss_dssp HHHHHHHHHHHHHHCC----CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhcccc-cCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHH
Confidence 77888899999887653 24569999999999999999999999999999999999999999999887766788899999
Q ss_pred HHHCCCCCHHHHHHHHHHHhcccccccccc--------------------------------cc--cccCCcccChhHHH
Q psy4538 161 GRMTTDFSGADMASLCREASLGPVRSIDLS--------------------------------RI--DALDVRPISIDDFR 206 (343)
Q Consensus 161 a~~t~g~s~~dl~~l~~~a~~~a~~~~~~~--------------------------------~~--~~~~~~~i~~~d~~ 206 (343)
++.+.||+++||.++|+.|++.|+++.... .+ ......+|+++||.
T Consensus 246 a~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~ 325 (355)
T 2qp9_X 246 GAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFL 325 (355)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHH
Confidence 999999999999999999998887653111 00 01123579999999
Q ss_pred HHHHhcCCCccccc
Q psy4538 207 DALKTVRPSVCQAD 220 (343)
Q Consensus 207 ~a~~~~~ps~~~k~ 220 (343)
.|++.++|+.+.++
T Consensus 326 ~Al~~~~ps~~~~~ 339 (355)
T 2qp9_X 326 KAIKSTRPTVNEDD 339 (355)
T ss_dssp HHHHHSCCSSCHHH
T ss_pred HHHHHcCCCCCHHH
Confidence 99999999987754
No 13
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.98 E-value=7.8e-32 Score=255.09 Aligned_cols=219 Identities=49% Similarity=0.801 Sum_probs=182.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-CCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchh
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-KATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENE 79 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~ 79 (343)
+||+||||||||++|+++|+++ +.+++.++++++.+.+.|..+..++.+|..+....|+||||||+|.+.+.+......
T Consensus 170 vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~ 249 (444)
T 2zan_A 170 ILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESE 249 (444)
T ss_dssp EEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCG
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCcccc
Confidence 5899999999999999999999 899999999999999888888889999999988899999999999998877666666
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHHH
Q psy4538 80 TSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEE 159 (343)
Q Consensus 80 ~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~ 159 (343)
...++...++..+++... ....++||++||.++.+++++++||...++++.|+.++|.+||+.++...+..+++.++..
T Consensus 250 ~~~~~~~~lL~~l~~~~~-~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~ 328 (444)
T 2zan_A 250 AARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQE 328 (444)
T ss_dssp GGHHHHHHHHTTTTCSSC-CCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHH
T ss_pred HHHHHHHHHHHHHhCccc-CCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 678888999999887653 3467999999999999999999999999999999999999999999988766678889999
Q ss_pred HHHHCCCCCHHHHHHHHHHHhcccccccccc--------------------------------------cc--cccCCcc
Q psy4538 160 VGRMTTDFSGADMASLCREASLGPVRSIDLS--------------------------------------RI--DALDVRP 199 (343)
Q Consensus 160 la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~--------------------------------------~~--~~~~~~~ 199 (343)
|++.+.||+++||..+|+.|++.++++.... .+ ......+
T Consensus 329 la~~t~G~sgadl~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (444)
T 2zan_A 329 LGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPV 408 (444)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCC
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCc
Confidence 9999999999999999999998887653211 00 0012357
Q ss_pred cChhHHHHHHHhcCCCccccc
Q psy4538 200 ISIDDFRDALKTVRPSVCQAD 220 (343)
Q Consensus 200 i~~~d~~~a~~~~~ps~~~k~ 220 (343)
|+++||..+++.++||+++++
T Consensus 409 v~~~df~~a~~~~~ps~~~~~ 429 (444)
T 2zan_A 409 VSMWDMLRSLSSTKPTVNEQD 429 (444)
T ss_dssp EEHHHHHHHHHTCCCSCCHHH
T ss_pred cCHHHHHHHHHhCCCCCCHHH
Confidence 999999999999999988765
No 14
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.9e-30 Score=239.28 Aligned_cols=220 Identities=65% Similarity=1.026 Sum_probs=185.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
+||+||||||||++|+++|++++.+++.++++++...+.+.....++.+|..+....|+||||||+|.+...++......
T Consensus 120 vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~ 199 (357)
T 3d8b_A 120 ILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHES 199 (357)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchH
Confidence 58999999999999999999999999999999999999999999999999999888899999999999988766555556
Q ss_pred HHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHHHH
Q psy4538 81 SRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEV 160 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~l 160 (343)
..++...++..+++.......++++|++||.++.+++++++||...++++.|+.++|.++++.+++..+..++++.+..+
T Consensus 200 ~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~l 279 (357)
T 3d8b_A 200 SRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQI 279 (357)
T ss_dssp HHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHH
Confidence 67888899999988765556789999999999999999999999999999999999999999999887777888899999
Q ss_pred HHHCCCCCHHHHHHHHHHHhcccccccccc---cccccCCcccChhHHHHHHHhcCCCccccc
Q psy4538 161 GRMTTDFSGADMASLCREASLGPVRSIDLS---RIDALDVRPISIDDFRDALKTVRPSVCQAD 220 (343)
Q Consensus 161 a~~t~g~s~~dl~~l~~~a~~~a~~~~~~~---~~~~~~~~~i~~~d~~~a~~~~~ps~~~k~ 220 (343)
++.+.||++++|..+|++|+..+++++... .........|+.+||..++..++|+...++
T Consensus 280 a~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~ 342 (357)
T 3d8b_A 280 VQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKD 342 (357)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGGGCCCCC
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCCCCCHHH
Confidence 999999999999999999998888754321 122234568999999999999999876654
No 15
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=230.70 Aligned_cols=219 Identities=34% Similarity=0.532 Sum_probs=171.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
++|+||||||||++++++|.+++..++.+++.++.+.+.++.+..+..+|+.+....|+++++||+|.+...+.......
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~ 126 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGA 126 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchH
Confidence 58999999999999999999999999999999998888888888999999998778899999999999876543322223
Q ss_pred HHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhC-C-CCChhh
Q psy4538 81 SRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNIT-N-SLTVDD 156 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~-~-~~~~~~ 156 (343)
..+....++..+++... ...+++++++|.|+.+|+++++ ||+..|+++.|+.++|.+||+.++++.. . ...+.+
T Consensus 127 ~~~~~~~~l~~Lsgg~~--~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~ 204 (274)
T 2x8a_A 127 SVRVVNQLLTEMDGLEA--RQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVN 204 (274)
T ss_dssp CTTHHHHHHHHHHTCCS--TTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCC
T ss_pred HHHHHHHHHHhhhcccc--cCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccC
Confidence 34567788888888754 5668999999999999999998 9999999999999999999999886522 1 223457
Q ss_pred HHHHHHHC--CCCCHHHHHHHHHHHhccccccccccc--ccccCCcccChhHHHHHHHhcCCCcccccc
Q psy4538 157 IEEVGRMT--TDFSGADMASLCREASLGPVRSIDLSR--IDALDVRPISIDDFRDALKTVRPSVCQADF 221 (343)
Q Consensus 157 ~~~la~~t--~g~s~~dl~~l~~~a~~~a~~~~~~~~--~~~~~~~~i~~~d~~~a~~~~~ps~~~k~~ 221 (343)
+..++..+ .||+++||.++|++|++.|+++..... ........|+.+||..|+++++|+.+.+++
T Consensus 205 ~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 205 LEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSISKKDQ 273 (274)
T ss_dssp HHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTCCCCC-----
T ss_pred HHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcCCCChhhc
Confidence 88999875 599999999999999988887532111 111223479999999999999999887653
No 16
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.97 E-value=1.1e-29 Score=228.54 Aligned_cols=218 Identities=51% Similarity=0.863 Sum_probs=182.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
+||+||||||||++|+++|++++.+++.+++.++...+.+.....++.+|..+....|++|+|||+|.+...++......
T Consensus 57 vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~ 136 (297)
T 3b9p_A 57 LLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEA 136 (297)
T ss_dssp EEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CC
T ss_pred EEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchH
Confidence 58999999999999999999999999999999999999998889999999999888999999999999987765544444
Q ss_pred HHHHHHHHHHhhccCCCC-CCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHHH
Q psy4538 81 SRRLKTEFLISLDGASTL-DDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEE 159 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~~-~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~ 159 (343)
..+....++..+++.... ....+++|++||.++.+++++++||...++++.|+.++|..+++.+++..+..+++..+..
T Consensus 137 ~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~ 216 (297)
T 3b9p_A 137 SRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRR 216 (297)
T ss_dssp SHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 566777888888876542 2356899999999999999999999999999999999999999999988877788889999
Q ss_pred HHHHCCCCCHHHHHHHHHHHhcccccccccc---cccccCCcccChhHHHHHHHhcCCCccc
Q psy4538 160 VGRMTTDFSGADMASLCREASLGPVRSIDLS---RIDALDVRPISIDDFRDALKTVRPSVCQ 218 (343)
Q Consensus 160 la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~---~~~~~~~~~i~~~d~~~a~~~~~ps~~~ 218 (343)
+++.+.|+++++|..+|+.|+..++++.... .........|+.+||..++..++|+...
T Consensus 217 la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~ 278 (297)
T 3b9p_A 217 LAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAP 278 (297)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCSSCH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCCCCH
Confidence 9999999999999999999998888764321 1122234679999999999999998654
No 17
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=236.82 Aligned_cols=218 Identities=53% Similarity=0.900 Sum_probs=177.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
+||+||||||||++|+++|++++.+++.+++.++.+.+.+.....++.+|..+....|+||||||+|.++..+.......
T Consensus 151 vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~ 230 (389)
T 3vfd_A 151 LLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDA 230 (389)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CT
T ss_pred EEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchH
Confidence 58999999999999999999999999999999999999999899999999999988999999999999988766555556
Q ss_pred HHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHHHH
Q psy4538 81 SRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEV 160 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~l 160 (343)
..++...++..+++........++||++||.++.+++++++||...++++.|+.++|.+||+.++...+..++++.+..+
T Consensus 231 ~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~l 310 (389)
T 3vfd_A 231 SRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQL 310 (389)
T ss_dssp HHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 67888889998887766556789999999999999999999999899999999999999999999888788889999999
Q ss_pred HHHCCCCCHHHHHHHHHHHhcccccccccc---cccccCCcccChhHHHHHHHhcCCCccc
Q psy4538 161 GRMTTDFSGADMASLCREASLGPVRSIDLS---RIDALDVRPISIDDFRDALKTVRPSVCQ 218 (343)
Q Consensus 161 a~~t~g~s~~dl~~l~~~a~~~a~~~~~~~---~~~~~~~~~i~~~d~~~a~~~~~ps~~~ 218 (343)
++.+.|+++++|..+++.|+..+++++... .........|+.+||..++..+.|+...
T Consensus 311 a~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~s~~~ 371 (389)
T 3vfd_A 311 ARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSP 371 (389)
T ss_dssp HHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCCSSCH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCCCCCH
Confidence 999999999999999999998888775332 2222345679999999999999888553
No 18
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.97 E-value=1.7e-30 Score=234.19 Aligned_cols=217 Identities=39% Similarity=0.663 Sum_probs=178.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCC---c
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQ---E 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~---~ 77 (343)
+||+||||||||++|+++|++++.+++.+++.++.+.+.|+....++.+|..+....|++|||||+|.+...++.. .
T Consensus 52 vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~ 131 (301)
T 3cf0_A 52 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 131 (301)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCS
T ss_pred EEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCc
Confidence 5899999999999999999999999999999999888888888889999999988899999999999997654321 1
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
.....+....++..+++... ..+++||++||.++.+++++++ ||...++++.|+.++|.+|++.+++..... .+.
T Consensus 132 ~~~~~~~~~~lL~~l~~~~~--~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~ 208 (301)
T 3cf0_A 132 GGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDV 208 (301)
T ss_dssp SCSCCHHHHHHHHHHHSSCT--TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSC
T ss_pred chHHHHHHHHHHHHhhcccC--CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccc
Confidence 12334667788888887654 5679999999999999999988 999999999999999999999999876433 344
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccc----------------cccCCcccChhHHHHHHHhcCCCcccc
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRI----------------DALDVRPISIDDFRDALKTVRPSVCQA 219 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~----------------~~~~~~~i~~~d~~~a~~~~~ps~~~k 219 (343)
++..++..+.||+++||.++|+.|+..+.++...... .......++.+||..|++.++|+.+.+
T Consensus 209 ~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~ 288 (301)
T 3cf0_A 209 DLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN 288 (301)
T ss_dssp CHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCSSCHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHH
Confidence 6889999999999999999999998888765321100 011235799999999999999997764
Q ss_pred c
Q psy4538 220 D 220 (343)
Q Consensus 220 ~ 220 (343)
+
T Consensus 289 ~ 289 (301)
T 3cf0_A 289 D 289 (301)
T ss_dssp H
T ss_pred H
Confidence 4
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.96 E-value=3.7e-29 Score=238.26 Aligned_cols=228 Identities=38% Similarity=0.606 Sum_probs=189.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
+||+||||||||++|++++++++.+|+.++|.++.+.+.++....++.+|..+....|++|||||+|.+.++++......
T Consensus 241 vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~ 320 (489)
T 3hu3_A 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320 (489)
T ss_dssp EEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchH
Confidence 58999999999999999999999999999999999999999999999999999988999999999999998877666677
Q ss_pred HHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHH
Q psy4538 81 SRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIE 158 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~ 158 (343)
..+++..|+..+++... ...+++|++||.++.+++++++ ||...++++.|+.++|.+||+.+++..... .+.++.
T Consensus 321 ~~~~~~~LL~~ld~~~~--~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~ 397 (489)
T 3hu3_A 321 ERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLE 397 (489)
T ss_dssp HHHHHHHHHHHHHHSCT--TSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHH
T ss_pred HHHHHHHHHHHhhcccc--CCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHH
Confidence 78889999999997754 5679999999999999999998 999999999999999999999998876443 334789
Q ss_pred HHHHHCCCCCHHHHHHHHHHHhcccccccccc-cccc-------cCCcccChhHHHHHHHhcCCCccccccccCcceEee
Q psy4538 159 EVGRMTTDFSGADMASLCREASLGPVRSIDLS-RIDA-------LDVRPISIDDFRDALKTVRPSVCQADFVHQPSIIFI 230 (343)
Q Consensus 159 ~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~-~~~~-------~~~~~i~~~d~~~a~~~~~ps~~~k~~~~~p~ilf~ 230 (343)
.++..+.||++++|..+|++|+..+.++.... .... .....++.+||..+++.++|+.....+...|.|=|=
T Consensus 398 ~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~ 477 (489)
T 3hu3_A 398 QVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWE 477 (489)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC--------
T ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHH
Confidence 99999999999999999999998887763221 1110 112368999999999999988777766677766554
Q ss_pred c
Q psy4538 231 D 231 (343)
Q Consensus 231 D 231 (343)
|
T Consensus 478 d 478 (489)
T 3hu3_A 478 D 478 (489)
T ss_dssp -
T ss_pred H
Confidence 4
No 20
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.96 E-value=1.3e-28 Score=217.39 Aligned_cols=207 Identities=34% Similarity=0.557 Sum_probs=162.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCc---
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQE--- 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~--- 77 (343)
+||+||||||||++|+++|++++.+++.+++.++...+.+.....++.+|..+....|++|+|||+|.+..++....
T Consensus 42 vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~ 121 (262)
T 2qz4_A 42 ALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF 121 (262)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC--------------
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCc
Confidence 58999999999999999999999999999999998888888888899999998888899999999999976653321
Q ss_pred -hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCCh
Q psy4538 78 -NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTV 154 (343)
Q Consensus 78 -~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~ 154 (343)
.......+..++..+++... ...+++|++||.++.+++++++ ||+..++++.|+.++|.++++.+++......+.
T Consensus 122 ~~~~~~~~l~~ll~~~~~~~~--~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~ 199 (262)
T 2qz4_A 122 SNTEEEQTLNQLLVEMDGMGT--TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSS 199 (262)
T ss_dssp -----CHHHHHHHHHHHTCCT--TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTH
T ss_pred cchhHHHHHHHHHHHhhCcCC--CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcch
Confidence 12233456677777776543 5578999999999999999998 999999999999999999999999887666554
Q ss_pred h-hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCCCccc
Q psy4538 155 D-DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRPSVCQ 218 (343)
Q Consensus 155 ~-~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ps~~~ 218 (343)
. ....++..+.|+++++|.++++.|+..|.++ ....|+.+|+..++..+.++...
T Consensus 200 ~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~---------~~~~i~~~d~~~a~~~~~~~~~~ 255 (262)
T 2qz4_A 200 TFYSQRLAELTPGFSGADIANICNEAALHAARE---------GHTSVHTLNFEYAVERVLAGTAK 255 (262)
T ss_dssp HHHHHHHHHTCTTCCHHHHHHHHHHHHTC-----------------CCBCCHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc---------CCCCCCHHHHHHHHHHhccChhh
Confidence 4 3578999999999999999999999888765 34679999999999988766443
No 21
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.96 E-value=1.8e-28 Score=231.74 Aligned_cols=203 Identities=36% Similarity=0.581 Sum_probs=172.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCC---Cc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSD---QE 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~---~~ 77 (343)
+||+||||||||++|+++|++++.+++.++++++...+.|.+...++.+|..+....|+||||||+|.+..+++. +.
T Consensus 52 vLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~ 131 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC--------
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcC
Confidence 589999999999999999999999999999999999999999999999999999889999999999999876643 22
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
.....+.++.++..++++.. ...++||++||.++.+++++++ ||+..+.++.|+.++|.+|++.++++.... ++.
T Consensus 132 ~~~~~~~l~~LL~~ld~~~~--~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~-~~v 208 (476)
T 2ce7_A 132 HDEREQTLNQLLVEMDGFDS--KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA-EDV 208 (476)
T ss_dssp -CHHHHHHHHHHHHHHHSCG--GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTC
T ss_pred cHHHHHHHHHHHHHHhccCC--CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc-chh
Confidence 33455678889988887654 4579999999999999999987 999999999999999999999998875432 344
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCCC
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRPS 215 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ps 215 (343)
++..+++.+.|++++||.++|++|+..+.++ +...|+.+||..++.++.+.
T Consensus 209 ~l~~la~~t~G~sgadL~~lv~~Aal~A~~~---------~~~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 209 NLEIIAKRTPGFVGADLENLVNEAALLAARE---------GRDKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp CHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHHHC--
T ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHHc---------CCCeecHHHHHHHHHHHhcC
Confidence 6888999999999999999999998877654 34679999999999987653
No 22
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=1.3e-27 Score=213.73 Aligned_cols=202 Identities=39% Similarity=0.666 Sum_probs=173.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCc---
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQE--- 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~--- 77 (343)
+||+||||||||++|+++|++++.+++.+++.++...+.+.....+..+|..+....|+||+|||+|.+.+++.+..
T Consensus 54 ~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~ 133 (285)
T 3h4m_A 54 ILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGG 133 (285)
T ss_dssp EEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGG
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCc
Confidence 58999999999999999999999999999999999999999999999999999888999999999999987765432
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
.......+..++..+++... ..++++|++||.++.+++++++ ||...+.++.|+.++|.+|++.+++..... .+.
T Consensus 134 ~~~~~~~l~~ll~~~~~~~~--~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~ 210 (285)
T 3h4m_A 134 DREVQRTLMQLLAEMDGFDA--RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDV 210 (285)
T ss_dssp GGHHHHHHHHHHHHHHTTCS--SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTC
T ss_pred cHHHHHHHHHHHHHhhCCCC--CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcC
Confidence 23344556666777765543 4579999999999999999999 999999999999999999999998875433 344
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCC
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRP 214 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~p 214 (343)
++..++..+.|++++++..+|+.|...|..+ ....|+.+|+..++..+.+
T Consensus 211 ~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~---------~~~~I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 211 NLEEIAKMTEGCVGAELKAICTEAGMNAIRE---------LRDYVTMDDFRKAVEKIME 260 (285)
T ss_dssp CHHHHHHHCTTCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---------ccCcCCHHHHHHHHHHHHh
Confidence 7899999999999999999999999888766 3467999999999987753
No 23
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.95 E-value=1.6e-27 Score=209.96 Aligned_cols=201 Identities=37% Similarity=0.585 Sum_probs=171.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCC---c
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQ---E 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~---~ 77 (343)
++|+||||||||++|++++++++.+++.+++.++...+.+.....++.+|..+....|++++|||+|.+...++.. .
T Consensus 48 vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~ 127 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG 127 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCT
T ss_pred EEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCC
Confidence 5899999999999999999999999999999999888888888889999999887889999999999998765432 1
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
.....+.+..++..+++... ..++++|++||.++.+++++.+ ||...+.++.|+.++|.+|++.+++..... ++.
T Consensus 128 ~~~~~~~~~~ll~~l~~~~~--~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~-~~~ 204 (257)
T 1lv7_A 128 HDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDI 204 (257)
T ss_dssp TCHHHHHHHHHHHHHHTCCS--SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTC
T ss_pred chHHHHHHHHHHHHhhCccc--CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCC-ccc
Confidence 22344677788888887654 5679999999999999999988 999999999999999999999998775432 344
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcC
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVR 213 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 213 (343)
++..++..+.||+++||.++|+.|...|.++ ....|+.+|+..++..+.
T Consensus 205 ~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~---------~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 205 DAAIIARGTPGFSGADLANLVNEAALFAARG---------NKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp CHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHHHT
T ss_pred cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---------CCCcccHHHHHHHHHHHh
Confidence 5788999999999999999999998887765 346799999999998764
No 24
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.94 E-value=1.8e-26 Score=219.24 Aligned_cols=204 Identities=34% Similarity=0.530 Sum_probs=172.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCC---c
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQ---E 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~---~ 77 (343)
++|+||||||||++++++|.+++.+++.+++.++...+.+.....++.+|+.+....|+++||||+|.+...++.. .
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~ 146 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 146 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTS
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCC
Confidence 5899999999999999999999999999999999888888888889999998876789999999999997665431 2
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
.....+.++.++..+++... ...++++++||.++.+|+++++ ||+..+.++.|+.++|.+||+.++++.... ++.
T Consensus 147 ~~e~~~~l~~LL~~Ldg~~~--~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~-~dv 223 (499)
T 2dhr_A 147 NDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDV 223 (499)
T ss_dssp SHHHHHHHHHHHHHGGGCCS--SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCC-CSS
T ss_pred cHHHHHHHHHHHHHhccccc--CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCC-hHH
Confidence 33445677888888887654 5568999999999999999998 899999999999999999999887654322 344
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCCCc
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRPSV 216 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ps~ 216 (343)
++..++..+.|++++||.++|++|+..|.++ ....|+.+||..++.++.+..
T Consensus 224 ~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~---------~~~~It~~dl~~al~~v~~~~ 275 (499)
T 2dhr_A 224 DLALLAKRTPGFVGADLENLLNEAALLAARE---------GRRKITMKDLEEAADRVMMLP 275 (499)
T ss_dssp TTHHHHTTSCSCCHHHHHHHHHHHHHHHTTT---------CCSSCCSHHHHHHHHHHTTCS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---------CCCccCHHHHHHHHHHHhccc
Confidence 6889999999999999999999998877654 345799999999999887653
No 25
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.94 E-value=5.2e-26 Score=199.92 Aligned_cols=197 Identities=35% Similarity=0.556 Sum_probs=161.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCC---c
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQ---E 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~---~ 77 (343)
++|+||||||||+++++++..++.+++.+++.++...+.+.....+..+|+.+....|+++++||+|.+....... .
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~ 131 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 131 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcccccc
Confidence 4899999999999999999999999999999888777777777888889998876789999999999987654321 1
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
.....+....++..+++... ...+++++++|.|+.+++++++ ||+..++++.|+.++|.+||+.++++.... ++.
T Consensus 132 ~~~~~~~~~~ll~~l~g~~~--~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~ 208 (254)
T 1ixz_A 132 NDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDV 208 (254)
T ss_dssp CHHHHHHHHHHHHHHHTCCT--TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBC-TTC
T ss_pred chHHHHHHHHHHHHHhCCCC--CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCC-ccc
Confidence 23345667788888877654 5568899999999999999998 899999999999999999999888764322 344
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHH
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDAL 209 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~ 209 (343)
++..+++.+.|++++||.++|+.|...|.++ ....|+.+|+.+++
T Consensus 209 ~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~---------~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 209 DLALLAKRTPGFVGADLENLLNEAALLAARE---------GRRKITMKDLEEAA 253 (254)
T ss_dssp CHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---------cCCCcCHHHHHHHh
Confidence 6889999999999999999999998877654 34579999998875
No 26
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.93 E-value=5.4e-25 Score=196.02 Aligned_cols=197 Identities=35% Similarity=0.556 Sum_probs=160.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCC---c
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQ---E 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~---~ 77 (343)
++|+||||||||+++++++..++..++.+++.++...+.+.....+..+|+.+....|+++++||+|.+....... .
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~ 155 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 155 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCc
Confidence 4899999999999999999999999999999888777777777788889998877789999999999886554321 1
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
.......+..++..+++... ...+++++++|.|+.+++++.+ ||+..++++.|+.++|.+||+.+++..... ++.
T Consensus 156 ~~~~~~~~~~ll~~lsgg~~--~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~ 232 (278)
T 1iy2_A 156 NDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDV 232 (278)
T ss_dssp CHHHHHHHHHHHHHHTTCCT--TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBC-TTC
T ss_pred chHHHHHHHHHHHHHhCCCC--CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCC-ccc
Confidence 22345566777777776543 5568899999999999999998 899999999999999999999888764322 334
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHH
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDAL 209 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~ 209 (343)
++..++..+.|++++||.++|+.|...+.++ ....|+.+|+.+++
T Consensus 233 ~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~---------~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 233 DLALLAKRTPGFVGADLENLLNEAALLAARE---------GRRKITMKDLEEAA 277 (278)
T ss_dssp CHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT---------TCCSBCHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---------CCCCcCHHHHHHHh
Confidence 6889999999999999999999998777654 34579999998875
No 27
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.93 E-value=8.6e-28 Score=212.93 Aligned_cols=208 Identities=33% Similarity=0.562 Sum_probs=163.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCc---
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQE--- 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~--- 77 (343)
+||+||||||||++|+++|++++.+++.+++..+...+.+.....++.+|..+....|++|+|||+|.+...+..+.
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~ 126 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVS 126 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC---------
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCC
Confidence 58999999999999999999999999999999988877776666677788888778899999999999976542111
Q ss_pred -hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCCh
Q psy4538 78 -NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTV 154 (343)
Q Consensus 78 -~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~ 154 (343)
.....+.+..++..+++... ...++++|++||.++.+++++.+ ||...++++.|+.++|.++|+.+++..... ++
T Consensus 127 ~~~~~~~~~~~ll~~l~~~~~-~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~ 204 (268)
T 2r62_A 127 GNDEREQTLNQLLAEMDGFGS-ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-ND 204 (268)
T ss_dssp -CCCSCSSTTTTTTTTTCSSC-SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SS
T ss_pred CchhHHHHHHHHHHHhhCccc-CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-Cc
Confidence 01111233456666665432 24568999999999999999998 999899999999999999999998765432 33
Q ss_pred hhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCCCcccc
Q psy4538 155 DDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRPSVCQA 219 (343)
Q Consensus 155 ~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ps~~~k 219 (343)
.++..+++.+.|+++++|.++|+.|...|..+ ....|+.+++..++..+.|+...+
T Consensus 205 ~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~---------~~~~i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 205 VNLQEVAKLTAGLAGADLANIINEAALLAGRN---------NQKEVRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp CCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSS---------CCCSCCHHHHHTSCTTCCCCCC--
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---------ccCCcCHHHHHHHHHHHhhcchhh
Confidence 45778999999999999999999998888654 346799999999999888875543
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.93 E-value=3.5e-28 Score=245.02 Aligned_cols=218 Identities=39% Similarity=0.661 Sum_probs=170.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCC---c
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQ---E 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~---~ 77 (343)
+||+||||||||++|+++|++++.+++.++++++.+.|.++.+..++.+|+.++...|+|+||||+|.+...++.. .
T Consensus 514 vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~ 593 (806)
T 1ypw_A 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593 (806)
T ss_dssp CCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHH
T ss_pred eEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCc
Confidence 5899999999999999999999999999999999999999999999999999998899999999999998776543 2
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChh
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVD 155 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 155 (343)
.....++++.++..+++... ...++||++||.++.+|+++++ ||+..++++.|+.++|.+||+.++++.... .+.
T Consensus 594 ~~~~~~v~~~LL~~ld~~~~--~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~ 670 (806)
T 1ypw_A 594 GGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDV 670 (806)
T ss_dssp HHHHHHHHHHHHTTCC--------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-----CC
T ss_pred chhHHHHHHHHHHHHhcccc--cCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCC-ccc
Confidence 33567888999999988754 5678999999999999999999 999999999999999999999988765432 344
Q ss_pred hHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccc----------------cccCCcccChhHHHHHHHhcCCCcccc
Q psy4538 156 DIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRI----------------DALDVRPISIDDFRDALKTVRPSVCQA 219 (343)
Q Consensus 156 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~----------------~~~~~~~i~~~d~~~a~~~~~ps~~~k 219 (343)
++..+++.+.||++++|.++|+.|+..|+++.....+ .......|+.+||..+++.++|+.+.+
T Consensus 671 ~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~ 750 (806)
T 1ypw_A 671 DLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN 750 (806)
T ss_dssp CCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC------------------------CCTTTTTTSSCCCCCC--------
T ss_pred CHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccCccCHHHHHHHHHhCCCCCCHH
Confidence 6778899999999999999999999888876422211 112235688999999988888887765
Q ss_pred cc
Q psy4538 220 DF 221 (343)
Q Consensus 220 ~~ 221 (343)
++
T Consensus 751 ~~ 752 (806)
T 1ypw_A 751 DI 752 (806)
T ss_dssp --
T ss_pred HH
Confidence 43
No 29
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.92 E-value=5.3e-27 Score=222.98 Aligned_cols=262 Identities=18% Similarity=0.240 Sum_probs=162.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC--CcEEEEecccccccccchHHHHHHHHHHHH---HhcCCcEEEecccccccccCCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK--ATFFCISASTLTSKWYGEGEKMVRALFAVA---SVHQPSIIFIDEIDSLLCQRSD 75 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~--~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~---~~~~p~vl~iDeid~l~~~~~~ 75 (343)
+||+||||||||++|+++|++++ .+++.++++++.+.+.++.+. +..+|..+ +...|++|||||+|.+++++..
T Consensus 66 iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~ 144 (456)
T 2c9o_A 66 VLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETE 144 (456)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC---
T ss_pred EEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCC
Confidence 58999999999999999999999 999999999999999999887 89999998 6788999999999999987654
Q ss_pred CchhHHH-------------------HHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHh--ccce--EEEEcCC
Q psy4538 76 QENETSR-------------------RLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVK--RLYIPLP 132 (343)
Q Consensus 76 ~~~~~~~-------------------~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~--~i~~~~P 132 (343)
....... ++...++..++......+..++++++||.++.+++++.+ ||+. .+.+|.|
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p 224 (456)
T 2c9o_A 145 NPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLP 224 (456)
T ss_dssp -----------CEEEEEEETTEEEEEEECHHHHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCC
T ss_pred CCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCC
Confidence 3211110 111234555543222234556667999999999999876 8986 5677777
Q ss_pred C--HHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHH
Q psy4538 133 D--EQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALK 210 (343)
Q Consensus 133 ~--~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~ 210 (343)
+ .++|.+|++.+.. .+++.++..+.| ++|+.++|........... ..--.+++...+.
T Consensus 225 ~~~~~~R~~il~~~~~--------~dl~~~a~~t~g--gadl~~l~~~i~~p~~~~I----------~~~lr~~I~~~l~ 284 (456)
T 2c9o_A 225 KGDVHKKKEIIQDVTL--------HDLDVANARPQG--GQDILSMMGQLMKPKKTEI----------TDKLRGEINKVVN 284 (456)
T ss_dssp CSCSEEEEEEEEEEEH--------HHHHHTC-----------------------------------------CHHHHHHH
T ss_pred chhHHHHHHHHHHHHH--------HHHHHHHHhCCC--hhHHHHHHhhhcccchhhH----------HHHHHHHHHHHHH
Confidence 4 4777777654332 368889999998 9999999864211000000 0000122222222
Q ss_pred hcCCCccccccccCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEee---------cC---C
Q psy4538 211 TVRPSVCQADFVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGA---------TN---R 278 (343)
Q Consensus 211 ~~~ps~~~k~~~~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~a---------TN---~ 278 (343)
.....+ -....|.|+|+||+|.+- ....+.||.-|+.-.. . +|++++ || .
T Consensus 285 ~~~~~g---~~~v~~~VliIDEa~~l~-----------~~a~~aLlk~lEe~~~--~--~~il~tn~~~~~i~~~~~~~~ 346 (456)
T 2c9o_A 285 KYIDQG---IAELVPGVLFVDEVHMLD-----------IECFTYLHRALESSIA--P--IVIFASNRGNCVIRGTEDITS 346 (456)
T ss_dssp HHHHTT---SEEEEECEEEEESGGGCB-----------HHHHHHHHHHTTSTTC--C--EEEEEECCSEEECBTTSSCEE
T ss_pred HHHHhc---cccccceEEEEechhhcC-----------HHHHHHHHHHhhccCC--C--EEEEecCCccccccccccccc
Confidence 211110 011235799999999983 3478889999886543 3 544444 32 2
Q ss_pred cccccHHHHHhhhceEeccCCCCC
Q psy4538 279 PQELDEAARRRLVKRLYIPLPDEQ 302 (343)
Q Consensus 279 ~~~lD~allRR~d~~i~~~~P~~~ 302 (343)
|+.|+|.++.||-. ++|+.|+.+
T Consensus 347 ~~~l~~~i~sR~~~-~~~~~~~~~ 369 (456)
T 2c9o_A 347 PHGIPLDLLDRVMI-IRTMLYTPQ 369 (456)
T ss_dssp ETTCCHHHHTTEEE-EECCCCCHH
T ss_pred cccCChhHHhhcce-eeCCCCCHH
Confidence 88899999999987 488877764
No 30
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.92 E-value=4.5e-24 Score=215.25 Aligned_cols=171 Identities=23% Similarity=0.318 Sum_probs=125.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----------CCcEEEEeccccc--ccccchHHHHHHHHHHHHHhcCCcEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----------KATFFCISASTLT--SKWYGEGEKMVRALFAVASVHQPSIIFIDEIDS 68 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~~~~l~--~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~ 68 (343)
+||+||||||||++|+++++.+ +..++.+++..+. ..+.|..+..++.++..+....+++|||||+|.
T Consensus 210 vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~ 289 (758)
T 1r6b_X 210 PLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHT 289 (758)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTT
T ss_pred eEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHH
Confidence 5899999999999999999987 6678888877765 456788888999999988777789999999999
Q ss_pred ccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCc-----hhhHHHHhccceEEEEcCCCHHHHHHHHHH
Q psy4538 69 LLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ-----ELDEAARRRLVKRLYIPLPDEQARCEIVTK 143 (343)
Q Consensus 69 l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~-----~l~~~l~~rf~~~i~~~~P~~~er~~il~~ 143 (343)
+.+....... ..... +.+..... ...+.+|++|+.+. .+++++.+||. .+.++.|+.+++.++++.
T Consensus 290 l~~~~~~~~~--~~~~~----~~L~~~l~--~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~ 360 (758)
T 1r6b_X 290 IIGAGAASGG--QVDAA----NLIKPLLS--SGKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIING 360 (758)
T ss_dssp TTTSCCSSSC--HHHHH----HHHSSCSS--SCCCEEEEEECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHH
T ss_pred HhhcCCCCcc--hHHHH----HHHHHHHh--CCCeEEEEEeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHH
Confidence 9876543211 11222 22222222 44578888887643 46788999998 799999999999999998
Q ss_pred HHhh----hCCCCChhhHHHHHHHCCC-----CCHHHHHHHHHHHh
Q psy4538 144 LLRN----ITNSLTVDDIEEVGRMTTD-----FSGADMASLCREAS 180 (343)
Q Consensus 144 ~l~~----~~~~~~~~~~~~la~~t~g-----~s~~dl~~l~~~a~ 180 (343)
+... ....++++.+..++..+.+ +.+..+..++.+|+
T Consensus 361 l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~ 406 (758)
T 1r6b_X 361 LKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAG 406 (758)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHH
Confidence 7765 3456778788877776544 45566777776664
No 31
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.91 E-value=6.9e-24 Score=213.68 Aligned_cols=155 Identities=26% Similarity=0.329 Sum_probs=109.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----------CCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEeccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----------KATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLL 70 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~ 70 (343)
+||+||||||||++|+++|+.+ +.+++.+++ ...+.|+.+..++.+|..+....++||||| ..
T Consensus 204 vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~~-- 276 (758)
T 3pxi_A 204 PVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID--AA-- 276 (758)
T ss_dssp EEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC--C---
T ss_pred eEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc--Cc--
Confidence 5899999999999999999997 788888887 455677778888999999888889999999 00
Q ss_pred ccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCc-----hhhHHHHhccceEEEEcCCCHHHHHHHHHHHH
Q psy4538 71 CQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ-----ELDEAARRRLVKRLYIPLPDEQARCEIVTKLL 145 (343)
Q Consensus 71 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~-----~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l 145 (343)
....+.++..++ .+.+.+|++||... .+++++++||. .+.++.|+.+++.+||+.+.
T Consensus 277 -----------~~~~~~L~~~l~------~~~v~~I~at~~~~~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 277 -----------IDASNILKPSLA------RGELQCIGATTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp ------------------CCCTT------SSSCEEEEECCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTT
T ss_pred -----------hhHHHHHHHHHh------cCCEEEEeCCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHH
Confidence 011122322222 45688999998887 78999999995 79999999999999999877
Q ss_pred hh----hCCCCChhhHHHHHHHCC-----CCCHHHHHHHHHHHh
Q psy4538 146 RN----ITNSLTVDDIEEVGRMTT-----DFSGADMASLCREAS 180 (343)
Q Consensus 146 ~~----~~~~~~~~~~~~la~~t~-----g~s~~dl~~l~~~a~ 180 (343)
.. .+..++++.+..++..+. ++.+.....++..|+
T Consensus 339 ~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~ 382 (758)
T 3pxi_A 339 DRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAG 382 (758)
T ss_dssp TTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHH
Confidence 65 345677777777776543 445566666665553
No 32
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=8.8e-25 Score=200.50 Aligned_cols=80 Identities=39% Similarity=0.531 Sum_probs=71.7
Q ss_pred cCcceEeecchhhhhcccCCCcc---hhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEecc
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQEN---ETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIP 297 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~---~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~ 297 (343)
.+||||||||+|+++++|+++++ ...++++++||++|||+.+..+ |+||||||+|+.||||++| |||++|+||
T Consensus 240 ~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~--V~vIaATNrpd~LDpAllRpGRfD~~I~i~ 317 (405)
T 4b4t_J 240 HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN--IKIIMATNRLDILDPALLRPGRIDRKIEFP 317 (405)
T ss_dssp TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCC--EEEEEEESCSSSSCHHHHSTTSSCCEEECC
T ss_pred hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCC--eEEEeccCChhhCCHhHcCCCcCceEEEcC
Confidence 37999999999999999975543 4568899999999999998555 9999999999999999999 999999999
Q ss_pred CCCCCCC
Q psy4538 298 LPDEQKV 304 (343)
Q Consensus 298 ~P~~~~r 304 (343)
+||.++|
T Consensus 318 lPd~~~R 324 (405)
T 4b4t_J 318 PPSVAAR 324 (405)
T ss_dssp CCCHHHH
T ss_pred CcCHHHH
Confidence 9998766
No 33
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.90 E-value=1.2e-23 Score=188.41 Aligned_cols=166 Identities=20% Similarity=0.295 Sum_probs=121.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHH----HhcCCcEEEecccccccccCCCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVA----SVHQPSIIFIDEIDSLLCQRSDQ 76 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~----~~~~p~vl~iDeid~l~~~~~~~ 76 (343)
+|||||||||||++|+++|++++.+++.++++++.+.+.|.....++.+|..+ +...|+||+|||+|.+.+.....
T Consensus 39 lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~ 118 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGT 118 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---------
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCC
Confidence 58999999999999999999999999999999999999999999999999888 46789999999999998754321
Q ss_pred c--hhHHHHHHHHHHHhhccCC---------CCCCCcEEEEEecCCCchhhHHHHh--ccceEEEEcCCCHHHHHHHHHH
Q psy4538 77 E--NETSRRLKTEFLISLDGAS---------TLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTK 143 (343)
Q Consensus 77 ~--~~~~~~~~~~ll~~l~~~~---------~~~~~~v~vi~~tn~~~~l~~~l~~--rf~~~i~~~~P~~~er~~il~~ 143 (343)
. ......+...|+..+++.. .....++++|+|||.++.+++++++ ||+..++ .|+.++|.+|++.
T Consensus 119 ~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~ 196 (293)
T 3t15_A 119 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCTG 196 (293)
T ss_dssp -----CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHHHHHHHH
Confidence 1 1123456677888876432 1134579999999999999999997 8876665 5799999999998
Q ss_pred HHhhhCCCCChhhHHHHHHHCCCCCHHHHH
Q psy4538 144 LLRNITNSLTVDDIEEVGRMTTDFSGADMA 173 (343)
Q Consensus 144 ~l~~~~~~~~~~~~~~la~~t~g~s~~dl~ 173 (343)
++.... ++ ...+++.+.+|++++|.
T Consensus 197 ~~~~~~--~~---~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 197 IFRTDN--VP---AEDVVKIVDNFPGQSID 221 (293)
T ss_dssp HHGGGC--CC---HHHHHHHHHHSCSCCHH
T ss_pred hccCCC--CC---HHHHHHHhCCCCcccHH
Confidence 887542 33 55666667777777664
No 34
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=5.3e-24 Score=195.86 Aligned_cols=80 Identities=39% Similarity=0.523 Sum_probs=71.6
Q ss_pred cCcceEeecchhhhhcccCCCc---chhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEecc
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQE---NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIP 297 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~---~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~ 297 (343)
.+||||||||+|+++++|++++ +....+++++||++|||+.+..+ |+||+|||+|+.|||||+| |||++|+|+
T Consensus 274 ~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~--ViVIaATNrpd~LDpALlRpGRfD~~I~v~ 351 (437)
T 4b4t_I 274 NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGD--VKVIMATNKIETLDPALIRPGRIDRKILFE 351 (437)
T ss_dssp TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSS--EEEEEEESCSTTCCTTSSCTTTEEEEECCC
T ss_pred cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCC--EEEEEeCCChhhcCHHHhcCCceeEEEEcC
Confidence 3799999999999999996543 34568999999999999988555 9999999999999999999 999999999
Q ss_pred CCCCCCC
Q psy4538 298 LPDEQKV 304 (343)
Q Consensus 298 ~P~~~~r 304 (343)
+||.++|
T Consensus 352 lPd~~~R 358 (437)
T 4b4t_I 352 NPDLSTK 358 (437)
T ss_dssp CCCHHHH
T ss_pred CcCHHHH
Confidence 9998766
No 35
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.88 E-value=1.2e-21 Score=199.61 Aligned_cols=169 Identities=22% Similarity=0.292 Sum_probs=108.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----------CCcEEEEeccccc--ccccchHHHHHHHHHHHHHhc-CCcEEEecccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----------KATFFCISASTLT--SKWYGEGEKMVRALFAVASVH-QPSIIFIDEID 67 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~~~~l~--~~~~~~~~~~l~~~~~~~~~~-~p~vl~iDeid 67 (343)
++|+||||||||++++++|+.+ +.+++.+++..+. ..+.|+.+..++.++..+... .|+||||||+|
T Consensus 194 vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~ 273 (854)
T 1qvr_A 194 PVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELH 273 (854)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHH
Confidence 6899999999999999999987 8899999998886 456778888899999888754 68899999999
Q ss_pred cccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCc----hhhHHHHhccceEEEEcCCCHHHHHHHHHH
Q psy4538 68 SLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ----ELDEAARRRLVKRLYIPLPDEQARCEIVTK 143 (343)
Q Consensus 68 ~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~----~l~~~l~~rf~~~i~~~~P~~~er~~il~~ 143 (343)
.+.+....... ....+.+...+. ...+.+|++|+.+. .+++++.+||. .+.++.|+.+++.+|++.
T Consensus 274 ~l~~~~~~~g~---~~~~~~L~~~l~------~~~i~~I~at~~~~~~~~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~ 343 (854)
T 1qvr_A 274 TVVGAGKAEGA---VDAGNMLKPALA------RGELRLIGATTLDEYREIEKDPALERRFQ-PVYVDEPTVEETISILRG 343 (854)
T ss_dssp ---------------------HHHHH------TTCCCEEEEECHHHHHHHTTCTTTCSCCC-CEEECCCCHHHHHHHHHH
T ss_pred HHhccCCccch---HHHHHHHHHHHh------CCCeEEEEecCchHHhhhccCHHHHhCCc-eEEeCCCCHHHHHHHHHh
Confidence 99765433211 122222333332 23467888887664 36889999998 499999999999999987
Q ss_pred HHhhh----CCCCChhhHHHHHHHCC-----CCCHHHHHHHHHHH
Q psy4538 144 LLRNI----TNSLTVDDIEEVGRMTT-----DFSGADMASLCREA 179 (343)
Q Consensus 144 ~l~~~----~~~~~~~~~~~la~~t~-----g~s~~dl~~l~~~a 179 (343)
++..+ ...++++.+..+++.+. .+.+.....++.+|
T Consensus 344 ~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea 388 (854)
T 1qvr_A 344 LKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEA 388 (854)
T ss_dssp HHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHH
T ss_pred hhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHH
Confidence 77643 44567777777776543 34444444444433
No 36
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=7.6e-24 Score=197.13 Aligned_cols=79 Identities=44% Similarity=0.617 Sum_probs=71.0
Q ss_pred CcceEeecchhhhhcccCCCcc---hhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEeccC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQEN---ETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPL 298 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~---~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~~ 298 (343)
+||||||||+|+++++|++..+ ....+++++||++|||+.+..+ |+||||||+|+.||||++| |||++|+||+
T Consensus 274 aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~--ViVIaaTNrp~~LD~AllRpGRfD~~I~i~l 351 (434)
T 4b4t_M 274 APTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDR--VKVLAATNRVDVLDPALLRSGRLDRKIEFPL 351 (434)
T ss_dssp CSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCS--SEEEEECSSCCCCCTTTCSTTSEEEEEECCC
T ss_pred CCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCC--EEEEEeCCCchhcCHhHhcCCceeEEEEeCC
Confidence 7999999999999999976544 3457889999999999998444 9999999999999999999 9999999999
Q ss_pred CCCCCC
Q psy4538 299 PDEQKV 304 (343)
Q Consensus 299 P~~~~r 304 (343)
||.++|
T Consensus 352 Pd~~~R 357 (434)
T 4b4t_M 352 PSEDSR 357 (434)
T ss_dssp CCHHHH
T ss_pred cCHHHH
Confidence 998766
No 37
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=8.4e-24 Score=197.00 Aligned_cols=80 Identities=40% Similarity=0.635 Sum_probs=71.3
Q ss_pred cCcceEeecchhhhhcccCCCc---chhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEecc
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQE---NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIP 297 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~---~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~ 297 (343)
.+||||||||+|+++++|++.+ ++...+++++||++|||+.+..+ |+||+|||+|+.|||||+| |||++|+||
T Consensus 273 ~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~--vivI~ATNrp~~LDpAllRpGRfD~~I~i~ 350 (437)
T 4b4t_L 273 HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQ--TKIIMATNRPDTLDPALLRPGRLDRKVEIP 350 (437)
T ss_dssp SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTS--SEEEEEESSTTSSCTTTTSTTSEEEEECCC
T ss_pred cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCC--eEEEEecCCchhhCHHHhCCCccceeeecC
Confidence 3799999999999999996543 45668899999999999998554 9999999999999999999 899999999
Q ss_pred CCCCCCC
Q psy4538 298 LPDEQKV 304 (343)
Q Consensus 298 ~P~~~~r 304 (343)
+||.++|
T Consensus 351 lPd~~~R 357 (437)
T 4b4t_L 351 LPNEAGR 357 (437)
T ss_dssp CCCHHHH
T ss_pred CcCHHHH
Confidence 9998765
No 38
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=4.5e-23 Score=191.46 Aligned_cols=80 Identities=35% Similarity=0.500 Sum_probs=71.5
Q ss_pred cCcceEeecchhhhhcccCCCcc---hhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEecc
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQEN---ETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIP 297 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~---~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~ 297 (343)
.+||||||||+|+++++|+++++ ....+++++||++|||+....+ |+||+|||+|+.||||++| |||++|+|+
T Consensus 301 ~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~--ViVIaATNrpd~LDpALlRpGRFD~~I~i~ 378 (467)
T 4b4t_H 301 KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN--IKVMFATNRPNTLDPALLRPGRIDRKVEFS 378 (467)
T ss_dssp TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT--EEEEEECSCTTSBCHHHHSTTTCCEEECCC
T ss_pred cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc--EEEEeCCCCcccCChhhhccccccEEEEeC
Confidence 37999999999999999976544 3557899999999999988544 9999999999999999999 999999999
Q ss_pred CCCCCCC
Q psy4538 298 LPDEQKV 304 (343)
Q Consensus 298 ~P~~~~r 304 (343)
+|+.++|
T Consensus 379 lPd~~~R 385 (467)
T 4b4t_H 379 LPDLEGR 385 (467)
T ss_dssp CCCHHHH
T ss_pred CcCHHHH
Confidence 9998776
No 39
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=4e-23 Score=192.12 Aligned_cols=80 Identities=41% Similarity=0.613 Sum_probs=71.2
Q ss_pred cCcceEeecchhhhhcccCCC---cchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEecc
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQ---ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIP 297 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~---~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~ 297 (343)
.+|||+||||+|+++++|++. +++..+|++++||++|||+.+..+ |+||+|||+|+.||||++| |||++|+||
T Consensus 264 ~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~--v~vI~aTN~~~~LD~AllRpGRfd~~I~~p 341 (428)
T 4b4t_K 264 NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTN--VKVIMATNRADTLDPALLRPGRLDRKIEFP 341 (428)
T ss_dssp TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCS--EEEEEEESCSSSCCHHHHSSSSEEEEEECC
T ss_pred cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCC--EEEEEecCChhhcChhhhcCCcceEEEEcC
Confidence 379999999999999999643 345678999999999999988555 9999999999999999999 999999996
Q ss_pred -CCCCCCC
Q psy4538 298 -LPDEQKV 304 (343)
Q Consensus 298 -~P~~~~r 304 (343)
+|+.++|
T Consensus 342 ~lPd~~~R 349 (428)
T 4b4t_K 342 SLRDRRER 349 (428)
T ss_dssp SSCCHHHH
T ss_pred CCCCHHHH
Confidence 8998765
No 40
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.85 E-value=2.2e-21 Score=175.04 Aligned_cols=177 Identities=18% Similarity=0.251 Sum_probs=141.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-------CCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-------KATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQR 73 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-------~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~ 73 (343)
+||+||||||||++|+++|+.+ +.+++.+++.++.+.+.+.....+..+|..+ .+++|+|||+|.+....
T Consensus 70 vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~ 146 (309)
T 3syl_A 70 MSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPD 146 (309)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCC
Confidence 5899999999999999999988 3489999999999988888888888888776 47899999999997654
Q ss_pred CCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCc-----hhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhh
Q psy4538 74 SDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ-----ELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNI 148 (343)
Q Consensus 74 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~-----~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~ 148 (343)
+.. .........++..++.. ..++++|++++... .+++.+++||...++|++|+.+++.+|++.++...
T Consensus 147 ~~~--~~~~~~~~~Ll~~l~~~----~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~ 220 (309)
T 3syl_A 147 NER--DYGQEAIEILLQVMENN----RDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQ 220 (309)
T ss_dssp -----CCTHHHHHHHHHHHHHC----TTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred Ccc--cccHHHHHHHHHHHhcC----CCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHc
Confidence 321 22345667777777754 34567888887643 34688999999899999999999999999999988
Q ss_pred CCCCChhhHHHHHHH-------CCCCCHHHHHHHHHHHhcccccc
Q psy4538 149 TNSLTVDDIEEVGRM-------TTDFSGADMASLCREASLGPVRS 186 (343)
Q Consensus 149 ~~~~~~~~~~~la~~-------t~g~s~~dl~~l~~~a~~~a~~~ 186 (343)
+..++++.+..++.. ....+.+++.++++.+...+..+
T Consensus 221 ~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r 265 (309)
T 3syl_A 221 NYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANR 265 (309)
T ss_dssp TCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 888889888888886 33346899999999887655544
No 41
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.85 E-value=1.5e-21 Score=181.95 Aligned_cols=265 Identities=20% Similarity=0.295 Sum_probs=115.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccc-cccch-HHHHHHHHHHHHHhcCCcEEEecccccccccCCCCch
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTS-KWYGE-GEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQEN 78 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~-~~~~~-~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~ 78 (343)
+||+||||||||++|+++|+.++.+++.++++.+.. .|.|. .+..++.+|..+.. ++.+||++.+.... ..
T Consensus 53 iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~----~~~~De~d~~~~~~---~~ 125 (444)
T 1g41_A 53 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMK----LVRQQEIAKNRARA---ED 125 (444)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHH----HHHHHHHHSCC--------
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHh----cchhhhhhhhhccc---hh
Confidence 589999999999999999999999999999999887 58885 78888999988764 34588888764332 23
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCcEEEEEe-cCCCchhhHHHHh--ccceEEEEcCCCHH-HHHHHHHHHHhhhCCCCCh
Q psy4538 79 ETSRRLKTEFLISLDGASTLDDDLVLVIGA-TNRPQELDEAARR--RLVKRLYIPLPDEQ-ARCEIVTKLLRNITNSLTV 154 (343)
Q Consensus 79 ~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~-tn~~~~l~~~l~~--rf~~~i~~~~P~~~-er~~il~~~l~~~~~~~~~ 154 (343)
....+++..|+..+++.... ..+ +++ ||.++.+++++++ ||+..|+++.|+.. .+.+|+.. .. ..+
T Consensus 126 ~~e~rvl~~LL~~~dg~~~~--~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~--~g----~~~ 195 (444)
T 1g41_A 126 VAEERILDALLPPAKNQWGE--VEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAP--PG----MEE 195 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHhhccccc--ccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhcC--CC----hHH
Confidence 45578889999999987542 222 444 9999999999998 99999999999987 77777643 10 000
Q ss_pred hhHHHHHHHCCCCCHHHH--HHH-HHHHhcccccccccccccccCCcccChhHHHH-HHHhcCCCccccccccCcceEee
Q psy4538 155 DDIEEVGRMTTDFSGADM--ASL-CREASLGPVRSIDLSRIDALDVRPISIDDFRD-ALKTVRPSVCQADFVHQPSIIFI 230 (343)
Q Consensus 155 ~~~~~la~~t~g~s~~dl--~~l-~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~-a~~~~~ps~~~k~~~~~p~ilf~ 230 (343)
.-..+..+..++.+..- +.+ +..|. ..+ ......+.+..+++.. |+.+. ....|+|+
T Consensus 196 -~~~~~~~~~~~~~~~~~~~~~~~v~~a~-~~l-------~~~e~~~l~~~~~~~~~ai~~a----------e~~~il~~ 256 (444)
T 1g41_A 196 -MTNQLQSLFQNLGSDKTKKRKMKIKDAL-KAL-------IDDEAAKLINPEELKQKAIDAV----------EQNGIVFI 256 (444)
T ss_dssp --------------------------------C-------CGGGSCSSCCHHHHHHHHHHHH----------HHHCEEEE
T ss_pred -HHHHHHHHHHhhcCCCCcceeeeHHHHH-HHH-------HHHHHHHccCHHHHHHHHHHHh----------ccCCeeeH
Confidence 00011111111111100 000 00110 000 0111223344444433 33322 12458999
Q ss_pred cchhhhhcccCCCcchhHH-HHHHHHHHhhcCCCCC------CCCcEEEEeec-----CCcccccHHHHHhhhceEeccC
Q psy4538 231 DEIDSLLCQRSDQENETSR-RLKTEFLISLDGASTL------DDDLVLVIGAT-----NRPQELDEAARRRLVKRLYIPL 298 (343)
Q Consensus 231 DEiDsl~~~R~~~~~~~~~-r~v~~lL~~mdg~~~~------~~~~v~vi~aT-----N~~~~lD~allRR~d~~i~~~~ 298 (343)
||+|.++.+.++.+..++. -+-..||.-|||-... +.+.|++|+|. |.-|.| |+|+-||..+|.|+-
T Consensus 257 DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dli-pel~~R~~i~i~l~~ 335 (444)
T 1g41_A 257 DEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLI-PELQGRLPIRVELTA 335 (444)
T ss_dssp ETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSC-HHHHTTCCEEEECCC
T ss_pred HHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcc-hHHhcccceeeeCCC
Confidence 9999999765433333333 3557799999984321 23448888887 545544 888889999999987
Q ss_pred CCCC
Q psy4538 299 PDEQ 302 (343)
Q Consensus 299 P~~~ 302 (343)
.+++
T Consensus 336 lt~~ 339 (444)
T 1g41_A 336 LSAA 339 (444)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 7654
No 42
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.83 E-value=4.4e-20 Score=170.61 Aligned_cols=188 Identities=21% Similarity=0.212 Sum_probs=140.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC--cEEEEecccccccccch-------------------------------------
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA--TFFCISASTLTSKWYGE------------------------------------- 41 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~--~~~~v~~~~l~~~~~~~------------------------------------- 41 (343)
+||+||||||||++|+++++.++. +++.+++..+...+.+.
T Consensus 73 vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ 152 (368)
T 3uk6_A 73 VLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQ 152 (368)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC---
T ss_pred EEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccc
Confidence 589999999999999999999975 78888876643332221
Q ss_pred ------------HHHHHHHHHHHHHh---------cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCC
Q psy4538 42 ------------GEKMVRALFAVASV---------HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDD 100 (343)
Q Consensus 42 ------------~~~~l~~~~~~~~~---------~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 100 (343)
....++..+..+.. ..|+||||||+|.+. ......++..++.. .
T Consensus 153 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~-----------~~~~~~L~~~le~~----~ 217 (368)
T 3uk6_A 153 GFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLD-----------IESFSFLNRALESD----M 217 (368)
T ss_dssp -CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSB-----------HHHHHHHHHHTTCT----T
T ss_pred cchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccC-----------hHHHHHHHHHhhCc----C
Confidence 12233333333221 126799999999883 23445566666543 3
Q ss_pred CcEEEEEec-----------CCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCH
Q psy4538 101 DLVLVIGAT-----------NRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSG 169 (343)
Q Consensus 101 ~~v~vi~~t-----------n~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~ 169 (343)
.+++++++. |.+..+++.+++||.. +.+++|+.+++.++++..+...+..++++.+..+++.+.+.++
T Consensus 218 ~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~ 296 (368)
T 3uk6_A 218 APVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSL 296 (368)
T ss_dssp CCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCH
T ss_pred CCeeeeecccceeeeeccCCCCcccCCHHHHhhccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCH
Confidence 345555554 3467899999999975 8999999999999999999887788899999999999986799
Q ss_pred HHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcC
Q psy4538 170 ADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVR 213 (343)
Q Consensus 170 ~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 213 (343)
+++.++++.|...|..+ +...|+.+++.+++..+.
T Consensus 297 r~~~~ll~~a~~~A~~~---------~~~~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 297 RYAIQLITAASLVCRKR---------KGTEVQVDDIKRVYSLFL 331 (368)
T ss_dssp HHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHHSB
T ss_pred HHHHHHHHHHHHHHHHh---------CCCCCCHHHHHHHHHHhc
Confidence 99999999998777554 456899999999998743
No 43
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.81 E-value=6e-19 Score=156.30 Aligned_cols=193 Identities=18% Similarity=0.198 Sum_probs=136.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccccc-ccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchh
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSK-WYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENE 79 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~-~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~ 79 (343)
+||+||||||||++|+++|++++.+++.+++.+.... ..+.....++.+|..+....+++|+|||+|.++.....+. .
T Consensus 67 vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~ 145 (272)
T 1d2n_A 67 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP-R 145 (272)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT-B
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh-h
Confidence 5899999999999999999999999999988753222 1122335677788877767789999999999976543221 1
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhH-HHHhccceEEEEcCCCH-HHHHHHHHHHHhhhCCCCChhhH
Q psy4538 80 TSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDE-AARRRLVKRLYIPLPDE-QARCEIVTKLLRNITNSLTVDDI 157 (343)
Q Consensus 80 ~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~-~l~~rf~~~i~~~~P~~-~er~~il~~~l~~~~~~~~~~~~ 157 (343)
....++..+...++.... ....+++|++||.++.+++ .+++||...+.+|+++. ++...++.. . ..++++.+
T Consensus 146 ~~~~~l~~L~~~~~~~~~-~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~---~--~~~~~~~~ 219 (272)
T 1d2n_A 146 FSNLVLQALLVLLKKAPP-QGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL---L--GNFKDKER 219 (272)
T ss_dssp CCHHHHHHHHHHTTCCCS-TTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH---H--TCSCHHHH
T ss_pred HHHHHHHHHHHHhcCccC-CCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHh---c--CCCCHHHH
Confidence 234455556665554432 3567889999999998888 67789988888876655 333333332 2 35678899
Q ss_pred HHHHHHCCCC----CHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCC
Q psy4538 158 EEVGRMTTDF----SGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRP 214 (343)
Q Consensus 158 ~~la~~t~g~----s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~p 214 (343)
..+++.+.|+ +.+++.++++.+...+. ....+++..++.....
T Consensus 220 ~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~--------------~~~~~~~~~~l~~~~~ 266 (272)
T 1d2n_A 220 TTIAQQVKGKKVWIGIKKLLMLIEMSLQMDP--------------EYRVRKFLALLREEGA 266 (272)
T ss_dssp HHHHHHHTTSEEEECHHHHHHHHHHHTTSCG--------------GGHHHHHHHHHHHTSC
T ss_pred HHHHHHhcCCCccccHHHHHHHHHHHhhhch--------------HHHHHHHHHHHHHcCC
Confidence 9999999987 67888888888754432 2356677776665543
No 44
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.80 E-value=2.2e-18 Score=157.41 Aligned_cols=185 Identities=19% Similarity=0.236 Sum_probs=140.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
+||+||||||||++|+++++.++.+++.+++..+.. ...+...+.. ...+++|||||+|.+.
T Consensus 58 vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~------~~~~~~~~~~--~~~~~vl~lDEi~~l~---------- 119 (338)
T 3pfi_A 58 ILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK------SGDLAAILTN--LSEGDILFIDEIHRLS---------- 119 (338)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS------HHHHHHHHHT--CCTTCEEEEETGGGCC----------
T ss_pred EEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc------hhHHHHHHHh--ccCCCEEEEechhhcC----------
Confidence 589999999999999999999999999999876632 2223333332 2468899999999884
Q ss_pred HHHHHHHHHHhhccCCC--------------CCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHh
Q psy4538 81 SRRLKTEFLISLDGAST--------------LDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLR 146 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~--------------~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~ 146 (343)
......++..++.... ....++++|++||....+++++++||...+.+++|+.+++.++++..+.
T Consensus 120 -~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~ 198 (338)
T 3pfi_A 120 -PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAAL 198 (338)
T ss_dssp -HHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHH
Confidence 2334445555554321 0112488999999999999999999988999999999999999999998
Q ss_pred hhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCC
Q psy4538 147 NITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRP 214 (343)
Q Consensus 147 ~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~p 214 (343)
..+..++++.+..+++.+. .+++++.++++.+...+... ....++.+++..++.....
T Consensus 199 ~~~~~~~~~~~~~l~~~~~-G~~r~l~~~l~~~~~~a~~~---------~~~~i~~~~~~~~~~~~~~ 256 (338)
T 3pfi_A 199 KLNKTCEEKAALEIAKRSR-STPRIALRLLKRVRDFADVN---------DEEIITEKRANEALNSLGV 256 (338)
T ss_dssp HTTCEECHHHHHHHHHTTT-TCHHHHHHHHHHHHHHHHHT---------TCSEECHHHHHHHHHHHTC
T ss_pred hcCCCCCHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHhh---------cCCccCHHHHHHHHHHhCC
Confidence 8777788889999999665 47789998888875444322 2345888888888876543
No 45
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.79 E-value=2.1e-18 Score=155.38 Aligned_cols=210 Identities=23% Similarity=0.330 Sum_probs=144.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccc-cccchH-HHHHHHHHHHH-----HhcCCcEEEecccccccccC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTS-KWYGEG-EKMVRALFAVA-----SVHQPSIIFIDEIDSLLCQR 73 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~-~~~~~~-~~~l~~~~~~~-----~~~~p~vl~iDeid~l~~~~ 73 (343)
+||+||||||||++|+++++.++.+++.+++..+.. .+.+.. ...++.++..+ ....++||+|||+|.+....
T Consensus 53 vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~ 132 (310)
T 1ofh_A 53 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKG 132 (310)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCS
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccc
Confidence 589999999999999999999999999999988765 344322 23445554422 11247899999999997665
Q ss_pred CCCchh-HHHHHHHHHHHhhccCCC------CCCCcEEEEEe----cCCCchhhHHHHhccceEEEEcCCCHHHHHHHHH
Q psy4538 74 SDQENE-TSRRLKTEFLISLDGAST------LDDDLVLVIGA----TNRPQELDEAARRRLVKRLYIPLPDEQARCEIVT 142 (343)
Q Consensus 74 ~~~~~~-~~~~~~~~ll~~l~~~~~------~~~~~v~vi~~----tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~ 142 (343)
...... ....+...++..+++... .....+++|++ ++.+..+++.+.+||...+.|++|+.+++.+|++
T Consensus 133 ~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~ 212 (310)
T 1ofh_A 133 EYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILT 212 (310)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHH
Confidence 432222 223345667777765310 02345677777 5678899999999999889999999999999998
Q ss_pred H----HH-------hhhC--CCCChhhHHHHHHHCC-------CCCHHHHHHHHHHHhcccccccccccccccCCcccCh
Q psy4538 143 K----LL-------RNIT--NSLTVDDIEEVGRMTT-------DFSGADMASLCREASLGPVRSIDLSRIDALDVRPISI 202 (343)
Q Consensus 143 ~----~l-------~~~~--~~~~~~~~~~la~~t~-------g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~ 202 (343)
. +. ...+ ..++++.++.+++.+. +.+.+++.++++.+...+...... .......|+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~---~~~~~~~i~~ 289 (310)
T 1ofh_A 213 EPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASD---MNGQTVNIDA 289 (310)
T ss_dssp SSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGG---CTTCEEEECH
T ss_pred hhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCcc---ccCCEEEEee
Confidence 3 21 1122 2578888999998773 468899999998875332211100 0001124899
Q ss_pred hHHHHHHHhcC
Q psy4538 203 DDFRDALKTVR 213 (343)
Q Consensus 203 ~d~~~a~~~~~ 213 (343)
+++.+++....
T Consensus 290 ~~v~~~l~~~~ 300 (310)
T 1ofh_A 290 AYVADALGEVV 300 (310)
T ss_dssp HHHHHHTCSSS
T ss_pred HHHHHHHHhhh
Confidence 99999887654
No 46
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.77 E-value=1.3e-18 Score=168.18 Aligned_cols=201 Identities=21% Similarity=0.233 Sum_probs=131.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccc---------cccchHHHHHHHHHHHHHhcCCcEEEecccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTS---------KWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLC 71 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~---------~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~ 71 (343)
++|+||||||||++++++|..++.++..+++..+.. .+.|.....+...|..+....| ++||||+|.+..
T Consensus 111 vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~ 189 (543)
T 3m6a_A 111 LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSS 189 (543)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSE-EEEEEESSSCC-
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhh
Confidence 589999999999999999999999999999876543 3445555556666776654555 999999999965
Q ss_pred cCCCCchhHHHHHHHHHHHhhccCCCC-----------CCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHH
Q psy4538 72 QRSDQENETSRRLKTEFLISLDGASTL-----------DDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEI 140 (343)
Q Consensus 72 ~~~~~~~~~~~~~~~~ll~~l~~~~~~-----------~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~i 140 (343)
..+. .....++..++..... +...+++|+|||.++.+++++++||. .+.++.|+.+++.+|
T Consensus 190 ~~~~-------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~-vi~~~~~~~~e~~~I 261 (543)
T 3m6a_A 190 DFRG-------DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRME-IINIAGYTEIEKLEI 261 (543)
T ss_dssp ---------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEE-EEECCCCCHHHHHHH
T ss_pred hhcc-------CHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcc-eeeeCCCCHHHHHHH
Confidence 4321 1234455655532211 11568999999999999999999995 799999999999999
Q ss_pred HHHHHhh-----h-----CCCCChhhHHHHHHH-CCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHH
Q psy4538 141 VTKLLRN-----I-----TNSLTVDDIEEVGRM-TTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDAL 209 (343)
Q Consensus 141 l~~~l~~-----~-----~~~~~~~~~~~la~~-t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~ 209 (343)
++.++.. . ...++++.+..+++. +...+.+++++.+..++..+..+... .......|+.+++.+++
T Consensus 262 l~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~---~~~~~~~It~~~l~~~L 338 (543)
T 3m6a_A 262 VKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVA---EERKRITVTEKNLQDFI 338 (543)
T ss_dssp HHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHT---TCCSCCEECTTTTHHHH
T ss_pred HHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHh---cCCcceecCHHHHHHHh
Confidence 9887622 1 234577788887764 43456667666555544333222111 11233468899999888
Q ss_pred HhcC
Q psy4538 210 KTVR 213 (343)
Q Consensus 210 ~~~~ 213 (343)
..-.
T Consensus 339 g~~~ 342 (543)
T 3m6a_A 339 GKRI 342 (543)
T ss_dssp CSCC
T ss_pred CCcc
Confidence 6543
No 47
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.77 E-value=2e-18 Score=162.87 Aligned_cols=192 Identities=16% Similarity=0.207 Sum_probs=137.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-----CCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-----KATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSD 75 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-----~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~ 75 (343)
++|+||||+|||++++++++++ +.+++++++..+...+.+.........|.......+.+|+|||++.+..+.
T Consensus 133 lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~-- 210 (440)
T 2z4s_A 133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT-- 210 (440)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH--
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh--
Confidence 5899999999999999999988 888999998876543322211111112222222268999999999885321
Q ss_pred CchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCch---hhHHHHhccc--eEEEEcCCCHHHHHHHHHHHHhhhCC
Q psy4538 76 QENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQE---LDEAARRRLV--KRLYIPLPDEQARCEIVTKLLRNITN 150 (343)
Q Consensus 76 ~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~---l~~~l~~rf~--~~i~~~~P~~~er~~il~~~l~~~~~ 150 (343)
.....++..++.... .+..+++++.+.+.. +++.+++||. ..+.+++|+.+++.++++..+...+.
T Consensus 211 -------~~q~~l~~~l~~l~~--~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~ 281 (440)
T 2z4s_A 211 -------GVQTELFHTFNELHD--SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHG 281 (440)
T ss_dssp -------HHHHHHHHHHHHHHT--TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTC
T ss_pred -------HHHHHHHHHHHHHHH--CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 112233333332221 334566656565655 7899999996 68899999999999999999988777
Q ss_pred CCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCC
Q psy4538 151 SLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRP 214 (343)
Q Consensus 151 ~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~p 214 (343)
.++++.+..++..+.| +.+++.++++.+...+... ...|+.+++.+++....+
T Consensus 282 ~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~----------~~~It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 282 ELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETT----------GKEVDLKEAILLLKDFIK 334 (440)
T ss_dssp CCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHS----------SSCCCHHHHHHHTSTTTC
T ss_pred CCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh----------CCCCCHHHHHHHHHHHhh
Confidence 8888899999999875 8899999998886555322 245899999999887764
No 48
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.76 E-value=7.5e-18 Score=153.03 Aligned_cols=192 Identities=15% Similarity=0.213 Sum_probs=131.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQE 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~ 77 (343)
++|+||||||||++++++++++ +.+++++++.++...+.+.........|.... ..+++|+|||++.+..+.
T Consensus 40 lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~---- 114 (324)
T 1l8q_A 40 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE---- 114 (324)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH----
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh----
Confidence 5899999999999999999998 89999999988754433222211112222222 358899999999885321
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCc---hhhHHHHhccc--eEEEEcCCCHHHHHHHHHHHHhhhCCCC
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ---ELDEAARRRLV--KRLYIPLPDEQARCEIVTKLLRNITNSL 152 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~---~l~~~l~~rf~--~~i~~~~P~~~er~~il~~~l~~~~~~~ 152 (343)
.....++..++.... .+..+++++++.+. .+++.+.+||. ..+.+++ +.+++.++++..+...+..+
T Consensus 115 -----~~~~~l~~~l~~~~~--~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l 186 (324)
T 1l8q_A 115 -----RTQIEFFHIFNTLYL--LEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLEL 186 (324)
T ss_dssp -----HHHHHHHHHHHHHHH--TTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCC
T ss_pred -----HHHHHHHHHHHHHHH--CCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCC
Confidence 111223222222111 23356666777666 68899999996 6789999 99999999999998888889
Q ss_pred ChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCccc-ChhHHHHHHHhc
Q psy4538 153 TVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPI-SIDDFRDALKTV 212 (343)
Q Consensus 153 ~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i-~~~d~~~a~~~~ 212 (343)
+++.++.+++.+ .+.+++.++++.+.......+. ....+.+ +.+++.+++...
T Consensus 187 ~~~~l~~l~~~~--g~~r~l~~~l~~~~~~~~~~l~-----~~~~~~i~t~~~i~~~~~~~ 240 (324)
T 1l8q_A 187 RKEVIDYLLENT--KNVREIEGKIKLIKLKGFEGLE-----RKERKERDKLMQIVEFVANY 240 (324)
T ss_dssp CHHHHHHHHHHC--SSHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC--CCHHHHHHHHHHHHHcCHHHhc-----cccccCCCCHHHHHHHHHHH
Confidence 999999999999 5788888888876544100000 0122457 888888887754
No 49
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.76 E-value=1.6e-17 Score=150.70 Aligned_cols=185 Identities=21% Similarity=0.251 Sum_probs=139.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
++|+||||||||++|++++++++.+++.+++..+.. ...+...+... ...+++|||||+|.+..
T Consensus 41 vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~-~~~~~~l~lDEi~~l~~--------- 104 (324)
T 1hqc_A 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------PGDLAAILANS-LEEGDILFIDEIHRLSR--------- 104 (324)
T ss_dssp CEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS------HHHHHHHHTTT-CCTTCEEEETTTTSCCH---------
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC------hHHHHHHHHHh-ccCCCEEEEECCccccc---------
Confidence 689999999999999999999999999999877632 12222233221 24678999999998742
Q ss_pred HHHHHHHHHHhhccCCC-------C-------CCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHh
Q psy4538 81 SRRLKTEFLISLDGAST-------L-------DDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLR 146 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~-------~-------~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~ 146 (343)
.....++..++.... . ...++.+|++||.+..+++.+.+||...+.+++|+.+++.++++.++.
T Consensus 105 --~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~ 182 (324)
T 1hqc_A 105 --QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDAR 182 (324)
T ss_dssp --HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHH
T ss_pred --chHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHH
Confidence 122334444433210 0 113578999999999999999999988999999999999999999998
Q ss_pred hhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcC
Q psy4538 147 NITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVR 213 (343)
Q Consensus 147 ~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 213 (343)
..+..++++.+..++..+.| +++++.++++.+...+... ....++.+++..++....
T Consensus 183 ~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~~~---------~~~~i~~~~~~~~~~~~~ 239 (324)
T 1hqc_A 183 LLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDFAQVA---------GEEVITRERALEALAALG 239 (324)
T ss_dssp TTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTTTSTTT---------SCSCCCHHHHHHHHHHHT
T ss_pred hcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHh---------cCCCCCHHHHHHHHHHhc
Confidence 87778899999999999865 7789999999887666432 234688888888776653
No 50
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.75 E-value=1.2e-16 Score=136.41 Aligned_cols=173 Identities=18% Similarity=0.181 Sum_probs=128.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-----CCcEEEEecccccccccchHHHHHHHHHHHHH------hcCCcEEEecccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-----KATFFCISASTLTSKWYGEGEKMVRALFAVAS------VHQPSIIFIDEIDSL 69 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-----~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~------~~~p~vl~iDeid~l 69 (343)
++|+||+|+|||++++.+++++ +..++.+++...... ..+...+.... ...+.+|+|||+|.+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l 114 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADAL 114 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGS
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhc
Confidence 5899999999999999999986 456788887654321 11222222211 246789999999987
Q ss_pred cccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhC
Q psy4538 70 LCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNIT 149 (343)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~ 149 (343)
.. .....++..++.. ...+.+|+++|.+..+++.+.+|+. .+.+++|+.++..++++..+...+
T Consensus 115 ~~-----------~~~~~l~~~l~~~----~~~~~~i~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~ 178 (226)
T 2chg_A 115 TA-----------DAQAALRRTMEMY----SKSCRFILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEG 178 (226)
T ss_dssp CH-----------HHHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHT
T ss_pred CH-----------HHHHHHHHHHHhc----CCCCeEEEEeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcC
Confidence 42 1233444444442 3456788889999999999999998 899999999999999999998877
Q ss_pred CCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHH
Q psy4538 150 NSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALK 210 (343)
Q Consensus 150 ~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~ 210 (343)
..++++.+..+++.+.| +++.+.++++.++..+ ..|+.+++.+++.
T Consensus 179 ~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~--------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 179 VKITEDGLEALIYISGG-DFRKAINALQGAAAIG--------------EVVDADTIYQITA 224 (226)
T ss_dssp CCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC--------------SCBCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC--------------ceecHHHHHHHhc
Confidence 77888899999988865 7778778777765443 3588999988775
No 51
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.74 E-value=1.7e-18 Score=159.73 Aligned_cols=186 Identities=23% Similarity=0.376 Sum_probs=132.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccccc-ccchH-HHHHHHHHHHH----HhcCCcEEEecccccccccCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSK-WYGEG-EKMVRALFAVA----SVHQPSIIFIDEIDSLLCQRS 74 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~-~~~~~-~~~l~~~~~~~----~~~~p~vl~iDeid~l~~~~~ 74 (343)
+||+||||||||++|+++|+.++.+++.+++..+... +.|.. ...+..++..+ ....++||||||+|.+...+.
T Consensus 54 vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~ 133 (363)
T 3hws_A 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSD 133 (363)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSS
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccccc
Confidence 5899999999999999999999999999999987643 55554 44556666654 334578999999999987654
Q ss_pred CC---chhHHHHHHHHHHHhhccCC-----------------CCCCCcEEEEEecCCC----------------------
Q psy4538 75 DQ---ENETSRRLKTEFLISLDGAS-----------------TLDDDLVLVIGATNRP---------------------- 112 (343)
Q Consensus 75 ~~---~~~~~~~~~~~ll~~l~~~~-----------------~~~~~~v~vi~~tn~~---------------------- 112 (343)
.. .......+...|+..+++.. .....++++|++++..
T Consensus 134 ~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~ 213 (363)
T 3hws_A 134 NPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATV 213 (363)
T ss_dssp CC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC--------
T ss_pred ccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccc
Confidence 32 22233457888888888421 0012334455554432
Q ss_pred ------------------ch-----hhHHHHhccceEEEEcCCCHHHHHHHHHH----HHhh---------hCCCCChhh
Q psy4538 113 ------------------QE-----LDEAARRRLVKRLYIPLPDEQARCEIVTK----LLRN---------ITNSLTVDD 156 (343)
Q Consensus 113 ------------------~~-----l~~~l~~rf~~~i~~~~P~~~er~~il~~----~l~~---------~~~~~~~~~ 156 (343)
.. +.+.+.+||+..+.+++|+.+++.+|+.. ++++ ....++++.
T Consensus 214 ~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a 293 (363)
T 3hws_A 214 KAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEA 293 (363)
T ss_dssp ----CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHH
T ss_pred cccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHH
Confidence 01 67889999999899999999999999875 3321 122457888
Q ss_pred HHHHHH--HCCCCCHHHHHHHHHHHhcccccc
Q psy4538 157 IEEVGR--MTTDFSGADMASLCREASLGPVRS 186 (343)
Q Consensus 157 ~~~la~--~t~g~s~~dl~~l~~~a~~~a~~~ 186 (343)
++.|++ ....+..++|+++++.+...++.+
T Consensus 294 ~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 294 LDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp HHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 888886 445567899999998887666544
No 52
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.73 E-value=2e-17 Score=143.24 Aligned_cols=178 Identities=13% Similarity=0.126 Sum_probs=126.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC---CcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK---ATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQE 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~---~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~ 77 (343)
++|+||||||||+++++++++++ .+++.+++.++....... +. ....+.+|+|||++.+....
T Consensus 55 ~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~~~~~~vliiDe~~~~~~~~---- 120 (242)
T 3bos_A 55 IYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTAL--------LE--GLEQFDLICIDDVDAVAGHP---- 120 (242)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGG--------GT--TGGGSSEEEEETGGGGTTCH----
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH--------HH--hccCCCEEEEeccccccCCH----
Confidence 58999999999999999999874 778888888765543211 11 12457899999999884321
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcE-EEEEecCCCc---hhhHHHHhccc--eEEEEcCCCHHHHHHHHHHHHhhhCCC
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLV-LVIGATNRPQ---ELDEAARRRLV--KRLYIPLPDEQARCEIVTKLLRNITNS 151 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v-~vi~~tn~~~---~l~~~l~~rf~--~~i~~~~P~~~er~~il~~~l~~~~~~ 151 (343)
. ....++..++.... ...+ ++++++..+. .+.+.+.+||. ..+.+++|+.+++.++++.+++..+..
T Consensus 121 --~---~~~~l~~~l~~~~~--~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~ 193 (242)
T 3bos_A 121 --L---WEEAIFDLYNRVAE--QKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ 193 (242)
T ss_dssp --H---HHHHHHHHHHHHHH--HCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC
T ss_pred --H---HHHHHHHHHHHHHH--cCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 0 11222222222111 1223 4444444443 45588888885 789999999999999999999887778
Q ss_pred CChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHH
Q psy4538 152 LTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALK 210 (343)
Q Consensus 152 ~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~ 210 (343)
++++.++.+++.+.| +.+++.++++.+...+... .+.|+.+++.+++.
T Consensus 194 ~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~----------~~~It~~~v~~~l~ 241 (242)
T 3bos_A 194 LPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVH----------QRKLTIPFVKEMLR 241 (242)
T ss_dssp CCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHH----------TCCCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHh----------CCCCcHHHHHHHhh
Confidence 899999999998875 8889999998887665432 24699999988764
No 53
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.73 E-value=4.6e-17 Score=153.48 Aligned_cols=181 Identities=20% Similarity=0.253 Sum_probs=131.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHH----hcCCcEEEecccccccccCCCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVAS----VHQPSIIFIDEIDSLLCQRSDQ 76 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~----~~~p~vl~iDeid~l~~~~~~~ 76 (343)
+||+||||||||++|+++++.++.+++.+++.... ...++.++..+. ...+++|||||+|.+....
T Consensus 53 vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~-------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~--- 122 (447)
T 3pvs_A 53 MILWGPPGTGKTTLAEVIARYANADVERISAVTSG-------VKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ--- 122 (447)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC-------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-------
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC-------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH---
Confidence 58999999999999999999999999999875532 223344444332 3468899999999884332
Q ss_pred chhHHHHHHHHHHHhhccCCCCCCCcEEEEEec--CCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhh-------
Q psy4538 77 ENETSRRLKTEFLISLDGASTLDDDLVLVIGAT--NRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRN------- 147 (343)
Q Consensus 77 ~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~t--n~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~------- 147 (343)
...|+..++. ..+++|++| |....+++++.+|+. .+.+++|+.+++.++++..+..
T Consensus 123 --------q~~LL~~le~------~~v~lI~att~n~~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~ 187 (447)
T 3pvs_A 123 --------QDAFLPHIED------GTITFIGATTENPSFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGG 187 (447)
T ss_dssp ----------CCHHHHHT------TSCEEEEEESSCGGGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTT
T ss_pred --------HHHHHHHHhc------CceEEEecCCCCcccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhhhcc
Confidence 2235555553 235566555 555689999999997 7889999999999999999876
Q ss_pred hCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCC
Q psy4538 148 ITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRP 214 (343)
Q Consensus 148 ~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~p 214 (343)
....++++.++.+++.+.| +.+.+.++++.+...+... ..+...|+.+++.+++....+
T Consensus 188 ~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~a~~~-------~~~~~~It~e~v~~~l~~~~~ 246 (447)
T 3pvs_A 188 QDIVLPDETRRAIAELVNG-DARRALNTLEMMADMAEVD-------DSGKRVLKPELLTEIAGERSA 246 (447)
T ss_dssp SSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHSCBC-------TTSCEECCHHHHHHHHTCCCC
T ss_pred ccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccc-------cCCCCccCHHHHHHHHhhhhh
Confidence 3345788899999999664 7888888888887655321 012346899999988876543
No 54
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.73 E-value=1.8e-16 Score=136.96 Aligned_cols=173 Identities=21% Similarity=0.206 Sum_probs=126.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc------------------------EEEEecccccccccchHHHHHHHHHHHHH--
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT------------------------FFCISASTLTSKWYGEGEKMVRALFAVAS-- 54 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~------------------------~~~v~~~~l~~~~~~~~~~~l~~~~~~~~-- 54 (343)
++|+||+|+|||++++.+++.++.. ++.++... ......+..++....
T Consensus 48 ~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 121 (250)
T 1njg_A 48 YLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYA 121 (250)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCS
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhc
Confidence 4799999999999999999987532 22222211 112233444444332
Q ss_pred --hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 55 --VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 55 --~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
...+.+|+|||+|.+. ......++..++.. ...+.+|++++.+..+.+.+.+|+ ..+.+++|
T Consensus 122 ~~~~~~~vlviDe~~~l~-----------~~~~~~l~~~l~~~----~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l 185 (250)
T 1njg_A 122 PARGRFKVYLIDEVHMLS-----------RHSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILSRC-LQFHLKAL 185 (250)
T ss_dssp CSSSSSEEEEEETGGGSC-----------HHHHHHHHHHHHSC----CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCC
T ss_pred hhcCCceEEEEECccccc-----------HHHHHHHHHHHhcC----CCceEEEEEeCChHhCCHHHHHHh-hhccCCCC
Confidence 2347899999999873 12344555555543 345788888888889999999996 58999999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHH
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDAL 209 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~ 209 (343)
+.++..++++..+...+..++++.+..+++.+.| +++.+.++++.+...+. ..|+.+++.+++
T Consensus 186 ~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~~~~~~~~~~~~~-------------~~i~~~~v~~~~ 248 (250)
T 1njg_A 186 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQAIASGD-------------GQVSTQAVSAML 248 (250)
T ss_dssp CHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHTTTT-------------SSBCHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhccC-------------ceecHHHHHHHh
Confidence 9999999999999887777888899999999976 89999999998854331 358888888764
No 55
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.72 E-value=5.2e-17 Score=150.57 Aligned_cols=195 Identities=19% Similarity=0.175 Sum_probs=136.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---------CCcEEEEecccccccc----------------cch-HHHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---------KATFFCISASTLTSKW----------------YGE-GEKMVRALFAVAS 54 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---------~~~~~~v~~~~l~~~~----------------~~~-~~~~l~~~~~~~~ 54 (343)
++|+||||||||++++++++++ +.+++.+++....+.. .+. .......++....
T Consensus 47 vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~ 126 (387)
T 2v1u_A 47 ALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLS 126 (387)
T ss_dssp EEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh
Confidence 5899999999999999999988 8889999987543211 111 2222344444433
Q ss_pred h-cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCC---chhhHHHHhccce-EEEE
Q psy4538 55 V-HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRP---QELDEAARRRLVK-RLYI 129 (343)
Q Consensus 55 ~-~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~---~~l~~~l~~rf~~-~i~~ 129 (343)
. ..+.+|+|||+|.+.... .....+..++..++.... ..++.+|+++|.+ ..+++.+.+||.. .+.+
T Consensus 127 ~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~~~~~~~--~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l 198 (387)
T 2v1u_A 127 RLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRINQELGD--RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVF 198 (387)
T ss_dssp TSCSEEEEEEETTTHHHHST------THHHHHHHHHHGGGCC-------CEEEEECSCSTTSSSSCHHHHTTTTSEECCB
T ss_pred ccCCeEEEEEccHhhhcccC------CCChHHHhHhhchhhcCC--CceEEEEEEECCCchHhhhCHHHHhcCCCeEEee
Confidence 2 347799999999885321 022344445554433211 4467888888877 6789999999975 8999
Q ss_pred cCCCHHHHHHHHHHHHhh--hCCCCChhhHHHHHHHCC---CCCHHHHHHHHHHHhcccccccccccccccCCcccChhH
Q psy4538 130 PLPDEQARCEIVTKLLRN--ITNSLTVDDIEEVGRMTT---DFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDD 204 (343)
Q Consensus 130 ~~P~~~er~~il~~~l~~--~~~~~~~~~~~~la~~t~---g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d 204 (343)
++|+.++..++++..+.. ....++++.++.+++.+. | .++.+.++++.+...+... +...|+.++
T Consensus 199 ~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~---------~~~~i~~~~ 268 (387)
T 2v1u_A 199 PPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHG-DARRALDLLRVAGEIAERR---------REERVRREH 268 (387)
T ss_dssp CCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHT---------TCSCBCHHH
T ss_pred CCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHc---------CCCCcCHHH
Confidence 999999999999998875 334567778888888876 5 6778888888886555432 335688999
Q ss_pred HHHHHHhcC
Q psy4538 205 FRDALKTVR 213 (343)
Q Consensus 205 ~~~a~~~~~ 213 (343)
+..++....
T Consensus 269 v~~a~~~~~ 277 (387)
T 2v1u_A 269 VYSARAEIE 277 (387)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 988887664
No 56
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.72 E-value=3.8e-17 Score=146.43 Aligned_cols=171 Identities=9% Similarity=0.092 Sum_probs=119.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----------CCcEEEEecccccccc----------------cchHHHHHHHHHHHH-
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----------KATFFCISASTLTSKW----------------YGEGEKMVRALFAVA- 53 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~~~~l~~~~----------------~~~~~~~l~~~~~~~- 53 (343)
++|+||||||||++++++++++ +..++++||..+.+.+ .+.....+..+|...
T Consensus 48 lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~ 127 (318)
T 3te6_A 48 FYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVP 127 (318)
T ss_dssp EEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhh
Confidence 5899999999999999999998 3578899987654321 123445667777764
Q ss_pred -HhcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCch----hhHHHHhccc-eEE
Q psy4538 54 -SVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQE----LDEAARRRLV-KRL 127 (343)
Q Consensus 54 -~~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~----l~~~l~~rf~-~~i 127 (343)
....+.|++|||+|.+. . ..++..++.... ....++++|+++|..+. +++.+++||. ..|
T Consensus 128 ~~~~~~~ii~lDE~d~l~-~---------q~~L~~l~~~~~----~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i 193 (318)
T 3te6_A 128 KAKKRKTLILIQNPENLL-S---------EKILQYFEKWIS----SKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEI 193 (318)
T ss_dssp GGGSCEEEEEEECCSSSC-C---------THHHHHHHHHHH----CSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEE
T ss_pred hccCCceEEEEecHHHhh-c---------chHHHHHHhccc----ccCCcEEEEEEecCcccchhhcchhhhccCCceEE
Confidence 34567899999999996 1 133344444322 23567899999988754 4555678997 579
Q ss_pred EEcCCCHHHHHHHHHHHHhhhCC-----------------------------------CCChhhHHHHHHHCC--CCCHH
Q psy4538 128 YIPLPDEQARCEIVTKLLRNITN-----------------------------------SLTVDDIEEVGRMTT--DFSGA 170 (343)
Q Consensus 128 ~~~~P~~~er~~il~~~l~~~~~-----------------------------------~~~~~~~~~la~~t~--g~s~~ 170 (343)
.|++|+.+|..+|++..++.... .++++.++.+|+... ....+
T Consensus 194 ~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R 273 (318)
T 3te6_A 194 KLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTE 273 (318)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHH
T ss_pred EeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHH
Confidence 99999999999999999887532 247778888888532 12334
Q ss_pred HHHHHHHHHhccccc
Q psy4538 171 DMASLCREASLGPVR 185 (343)
Q Consensus 171 dl~~l~~~a~~~a~~ 185 (343)
..-++|+.|...|.+
T Consensus 274 ~Al~ilr~A~~~ae~ 288 (318)
T 3te6_A 274 KAFKICEAAVEISKK 288 (318)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444566777665544
No 57
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.70 E-value=6.8e-17 Score=145.64 Aligned_cols=171 Identities=20% Similarity=0.207 Sum_probs=123.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccccccccc------------chHHHHHHHHHHHHHhcCCcEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWY------------GEGEKMVRALFAVASVHQPSIIFIDE 65 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~------------~~~~~~l~~~~~~~~~~~p~vl~iDe 65 (343)
++|+||||||||++|+++++.+ +.+++.+++..+..... +... ...+........+++|+|||
T Consensus 50 ~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~--~~~~~~~~~~~~~~vl~lDE 127 (311)
T 4fcw_A 50 FLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDA 127 (311)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTT--CCHHHHHHHHCSSEEEEEET
T ss_pred EEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccc--cchHHHHHHhCCCeEEEEeC
Confidence 5899999999999999999988 56799999877643210 0000 01122222334468999999
Q ss_pred cccccccCCCCchhHHHHHHHHHHHhhccCCCC-------CCCcEEEEEecCC--------------------------C
Q psy4538 66 IDSLLCQRSDQENETSRRLKTEFLISLDGASTL-------DDDLVLVIGATNR--------------------------P 112 (343)
Q Consensus 66 id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~v~vi~~tn~--------------------------~ 112 (343)
+|.+. ......++..++..... .-.++++|++||. .
T Consensus 128 i~~l~-----------~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~ 196 (311)
T 4fcw_A 128 IEKAH-----------PDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQ 196 (311)
T ss_dssp GGGSC-----------HHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHH
T ss_pred hhhcC-----------HHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHH
Confidence 99873 23445566555543211 1135778999988 4
Q ss_pred chhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhh---------CCCCChhhHHHHHHHCC--CCCHHHHHHHHHHHhc
Q psy4538 113 QELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNI---------TNSLTVDDIEEVGRMTT--DFSGADMASLCREASL 181 (343)
Q Consensus 113 ~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~---------~~~~~~~~~~~la~~t~--g~s~~dl~~l~~~a~~ 181 (343)
..+++.+.+||...+.+++|+.+++.+|++.++... ...++++.++.+++... ..+.++++++++.+..
T Consensus 197 ~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 197 QHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 276 (311)
T ss_dssp HHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTH
T ss_pred HhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHH
Confidence 577889999999899999999999999999887653 34568888999998776 6788999999998866
Q ss_pred ccc
Q psy4538 182 GPV 184 (343)
Q Consensus 182 ~a~ 184 (343)
.+.
T Consensus 277 ~~~ 279 (311)
T 4fcw_A 277 TPL 279 (311)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 58
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.69 E-value=5.7e-16 Score=143.62 Aligned_cols=186 Identities=16% Similarity=0.152 Sum_probs=130.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-----------CCcEEEEeccccc-ccc-----------------cch-HHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-----------KATFFCISASTLT-SKW-----------------YGE-GEKMVRALF 50 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-----------~~~~~~v~~~~l~-~~~-----------------~~~-~~~~l~~~~ 50 (343)
++|+||||||||++++++++++ +.+++.+++.... +.. .+. ....+..++
T Consensus 48 vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 127 (384)
T 2qby_B 48 NLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIK 127 (384)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH
Confidence 5899999999999999999988 8999999987643 110 011 122234444
Q ss_pred HHHHhcCCcEEEecccccccccCCCCchhHHHHH-HHHHHHhhccCCCCCCCcEEEEEecCCC---chhhHHHHhccceE
Q psy4538 51 AVASVHQPSIIFIDEIDSLLCQRSDQENETSRRL-KTEFLISLDGASTLDDDLVLVIGATNRP---QELDEAARRRLVKR 126 (343)
Q Consensus 51 ~~~~~~~p~vl~iDeid~l~~~~~~~~~~~~~~~-~~~ll~~l~~~~~~~~~~v~vi~~tn~~---~~l~~~l~~rf~~~ 126 (343)
...... +.+|+|||+|.+..... ... +..++... .++.+|+++|.+ ..+++.+.+||...
T Consensus 128 ~~l~~~-~~vlilDEi~~l~~~~~-------~~~~l~~l~~~~--------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~ 191 (384)
T 2qby_B 128 NGTRNI-RAIIYLDEVDTLVKRRG-------GDIVLYQLLRSD--------ANISVIMISNDINVRDYMEPRVLSSLGPS 191 (384)
T ss_dssp HHHSSS-CEEEEEETTHHHHHSTT-------SHHHHHHHHTSS--------SCEEEEEECSSTTTTTTSCHHHHHTCCCE
T ss_pred HHhccC-CCEEEEECHHHhccCCC-------CceeHHHHhcCC--------cceEEEEEECCCchHhhhCHHHHhcCCCe
Confidence 433333 33999999998854321 112 22333221 467888888876 67899999998779
Q ss_pred EEEcCCCHHHHHHHHHHHHhh--hCCCCChhhHHHHHHHCCC--CCHHHHHHHHHHHhcccccccccccccccCCcccCh
Q psy4538 127 LYIPLPDEQARCEIVTKLLRN--ITNSLTVDDIEEVGRMTTD--FSGADMASLCREASLGPVRSIDLSRIDALDVRPISI 202 (343)
Q Consensus 127 i~~~~P~~~er~~il~~~l~~--~~~~~~~~~~~~la~~t~g--~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~ 202 (343)
+.+++|+.++..++++..+.. ....++++.++.+++.+.+ .+++.+.++++.|...+. +...|+.
T Consensus 192 i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~-----------~~~~i~~ 260 (384)
T 2qby_B 192 VIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS-----------GGGIIRK 260 (384)
T ss_dssp EEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-----------SSSCCCH
T ss_pred EEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc-----------CCCccCH
Confidence 999999999999999998874 2345677788888888762 356677778887765553 2356889
Q ss_pred hHHHHHHHhcC
Q psy4538 203 DDFRDALKTVR 213 (343)
Q Consensus 203 ~d~~~a~~~~~ 213 (343)
+++..++....
T Consensus 261 ~~v~~~~~~~~ 271 (384)
T 2qby_B 261 EHVDKAIVDYE 271 (384)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99988887764
No 59
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.69 E-value=1.7e-15 Score=138.04 Aligned_cols=184 Identities=18% Similarity=0.248 Sum_probs=133.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
++|+||||+||||+++++|++++.++...+...+.. ...+..++.. ...+.|++|||++.+.+
T Consensus 54 ~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~------~~~l~~~~~~--~~~~~v~~iDE~~~l~~--------- 116 (334)
T 1in4_A 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTS--LERGDVLFIDEIHRLNK--------- 116 (334)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------HHHHHHHHHH--CCTTCEEEEETGGGCCH---------
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC------HHHHHHHHHH--ccCCCEEEEcchhhcCH---------
Confidence 479999999999999999999999877666544321 1122233222 23567999999998852
Q ss_pred HHHHHHHHHHhhccCCC-------C-------CCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHh
Q psy4538 81 SRRLKTEFLISLDGAST-------L-------DDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLR 146 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~-------~-------~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~ 146 (343)
.....++..++.... . .-..+.++++++.+..+++.+++||...+.+++|+.++..++++...+
T Consensus 117 --~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 117 --AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp --HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHH
Confidence 111222222222110 0 012467778899999999999999998899999999999999999988
Q ss_pred hhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcC
Q psy4538 147 NITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVR 213 (343)
Q Consensus 147 ~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 213 (343)
..+..++++.+..+++.+.| +++.+.++++.+...|... +...|+.+++.+++..+.
T Consensus 195 ~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~a~~~---------~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 195 LMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDMLTVV---------KADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHHHHH---------TCSSBCHHHHHHHHHHHT
T ss_pred HcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHHhC
Confidence 77778889899999999886 6788888888775544332 235688899988888764
No 60
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.67 E-value=1.1e-15 Score=138.63 Aligned_cols=157 Identities=15% Similarity=0.173 Sum_probs=113.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhc-----CCcEEEecccccccccCCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVH-----QPSIIFIDEIDSLLCQRSD 75 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~-----~p~vl~iDeid~l~~~~~~ 75 (343)
+|++||||||||++++++|++++.+++++++++.. ...++..+...... .+.+|+|||+|.+..
T Consensus 51 ~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~---- 119 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL---- 119 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----
T ss_pred EEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----
Confidence 36788899999999999999999999999987642 22333333332222 578999999998841
Q ss_pred CchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHH-------Hhhh
Q psy4538 76 QENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKL-------LRNI 148 (343)
Q Consensus 76 ~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~-------l~~~ 148 (343)
......++..++.. ...+.+|+++|.+..+++.+++||. .+.|++|+.+++.++++.+ +...
T Consensus 120 ------~~~~~~L~~~le~~----~~~~~iI~~~n~~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~ 188 (324)
T 3u61_B 120 ------AESQRHLRSFMEAY----SSNCSIIITANNIDGIIKPLQSRCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHE 188 (324)
T ss_dssp ------HHHHHHHHHHHHHH----GGGCEEEEEESSGGGSCTTHHHHSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHhC----CCCcEEEEEeCCccccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 12334455555543 2356788899999999999999996 7999999999876665443 3445
Q ss_pred CCCCCh-hhHHHHHHHCCCCCHHHHHHHHHHHh
Q psy4538 149 TNSLTV-DDIEEVGRMTTDFSGADMASLCREAS 180 (343)
Q Consensus 149 ~~~~~~-~~~~~la~~t~g~s~~dl~~l~~~a~ 180 (343)
+..+++ +.+..+++.+.| +.+++.+.+..++
T Consensus 189 ~~~~~~~~~~~~l~~~~~g-d~R~a~~~L~~~~ 220 (324)
T 3u61_B 189 GIAIADMKVVAALVKKNFP-DFRKTIGELDSYS 220 (324)
T ss_dssp TCCBSCHHHHHHHHHHTCS-CTTHHHHHHHHHG
T ss_pred CCCCCcHHHHHHHHHhCCC-CHHHHHHHHHHHh
Confidence 566777 889999998775 4455666666554
No 61
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.67 E-value=1.3e-15 Score=138.71 Aligned_cols=188 Identities=18% Similarity=0.206 Sum_probs=123.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccc------ccccccchHHHHHHHHHHHHHhcC---CcEEEecccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISAST------LTSKWYGEGEKMVRALFAVASVHQ---PSIIFIDEIDSLLC 71 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~------l~~~~~~~~~~~l~~~~~~~~~~~---p~vl~iDeid~l~~ 71 (343)
+||+||||||||++|+++++.++.+++.+++.. +.+....... ...+ ..... .++|+|||++.+.+
T Consensus 49 vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~---~~~~--~~~~g~l~~~vl~iDEi~~~~~ 123 (331)
T 2r44_A 49 ILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQH---KGNF--EVKKGPVFSNFILADEVNRSPA 123 (331)
T ss_dssp EEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETT---TTEE--EEEECTTCSSEEEEETGGGSCH
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCC---CCce--EeccCcccccEEEEEccccCCH
Confidence 589999999999999999999999999888742 1111100000 0000 00011 37999999998632
Q ss_pred cCCCCchhHHHHHHHHHHHhhccCC-------CCCCCcEEEEEecCCCc-----hhhHHHHhccceEEEEcCCCHHHHHH
Q psy4538 72 QRSDQENETSRRLKTEFLISLDGAS-------TLDDDLVLVIGATNRPQ-----ELDEAARRRLVKRLYIPLPDEQARCE 139 (343)
Q Consensus 72 ~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~~v~vi~~tn~~~-----~l~~~l~~rf~~~i~~~~P~~~er~~ 139 (343)
.....++..++... .....++++++++|... .+++++++||...+.++.|+.+++.+
T Consensus 124 -----------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~ 192 (331)
T 2r44_A 124 -----------KVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELE 192 (331)
T ss_dssp -----------HHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHH
T ss_pred -----------HHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHH
Confidence 23334444444221 11234577888888543 38999999999889999999999999
Q ss_pred HHHHHHhhh----------------------CCCCChhhHHHHHHHC-------------------CCCCHHHHHHHHHH
Q psy4538 140 IVTKLLRNI----------------------TNSLTVDDIEEVGRMT-------------------TDFSGADMASLCRE 178 (343)
Q Consensus 140 il~~~l~~~----------------------~~~~~~~~~~~la~~t-------------------~g~s~~dl~~l~~~ 178 (343)
|++..+... ...++++.++.+++.. .|.+++.+..+++.
T Consensus 193 il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~ 272 (331)
T 2r44_A 193 VMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRV 272 (331)
T ss_dssp HHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHH
T ss_pred HHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHH
Confidence 999887642 2345666666665532 24578888888877
Q ss_pred HhcccccccccccccccCCcccChhHHHHHHHhcC
Q psy4538 179 ASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVR 213 (343)
Q Consensus 179 a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 213 (343)
|...|.-. +...++.+|+.+++..+.
T Consensus 273 a~a~A~l~---------g~~~v~~~dv~~~~~~vl 298 (331)
T 2r44_A 273 AKAMAFFN---------NRDYVLPEDIKEVAYDIL 298 (331)
T ss_dssp HHHHHHHT---------TCSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHc---------CCCCCCHHHHHHHHHHHh
Confidence 65444322 334589999999887654
No 62
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.66 E-value=1.1e-16 Score=133.24 Aligned_cols=131 Identities=23% Similarity=0.376 Sum_probs=91.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----------CCcEEEEeccccc--ccccchHHHHHHHHHHHHH-hcCCcEEEecccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----------KATFFCISASTLT--SKWYGEGEKMVRALFAVAS-VHQPSIIFIDEID 67 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~~~~l~--~~~~~~~~~~l~~~~~~~~-~~~p~vl~iDeid 67 (343)
++|+||||||||++++++++.+ +.+++.+++..+. ..+.+.....+..++.... ...+.+|+|||+|
T Consensus 46 ~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~ 125 (195)
T 1jbk_A 46 PVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELH 125 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGG
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHH
Confidence 5899999999999999999986 7888899887765 3344455566677776553 3557899999999
Q ss_pred cccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCc-----hhhHHHHhccceEEEEcCCCHHHHHHHH
Q psy4538 68 SLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ-----ELDEAARRRLVKRLYIPLPDEQARCEIV 141 (343)
Q Consensus 68 ~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~-----~l~~~l~~rf~~~i~~~~P~~~er~~il 141 (343)
.+...............+..++ + ..++.+|++++.+. .+++.+.+||. .+.+++|+.+++.+++
T Consensus 126 ~l~~~~~~~~~~~~~~~l~~~~---~------~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 126 TMVGAGKADGAMDAGNMLKPAL---A------RGELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp GGTT------CCCCHHHHHHHH---H------TTSCCEEEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred HHhccCcccchHHHHHHHHHhh---c------cCCeEEEEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 9975432211111122222222 2 23466788887765 67899999998 7999999999998775
No 63
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.66 E-value=9.9e-17 Score=145.35 Aligned_cols=81 Identities=57% Similarity=0.913 Sum_probs=72.8
Q ss_pred cCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHHhhhceEeccCCCCC
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQ 302 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allRR~d~~i~~~~P~~~ 302 (343)
.+||||||||+|+++++|+.......++++++||++|||+.. ....|+||+|||+|+.||++++||||..+++++|+.+
T Consensus 104 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~-~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~ 182 (322)
T 1xwi_A 104 NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPH 182 (322)
T ss_dssp TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSS-CCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHH
T ss_pred cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccc-cCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHH
Confidence 469999999999999999887778889999999999999863 1345999999999999999999999999999999986
Q ss_pred CC
Q psy4538 303 KV 304 (343)
Q Consensus 303 ~r 304 (343)
+|
T Consensus 183 ~r 184 (322)
T 1xwi_A 183 AR 184 (322)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 64
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.66 E-value=2.4e-15 Score=139.17 Aligned_cols=194 Identities=19% Similarity=0.214 Sum_probs=134.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHc------CCcEEEEeccccccc----------------ccch-HHHHHHHHHHHHHhc-
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC------KATFFCISASTLTSK----------------WYGE-GEKMVRALFAVASVH- 56 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l------~~~~~~v~~~~l~~~----------------~~~~-~~~~l~~~~~~~~~~- 56 (343)
++|+||+|+|||++++.+++.+ +.+++.+++...... ..+. .......++......
T Consensus 48 vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 127 (386)
T 2qby_A 48 IFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYG 127 (386)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccC
Confidence 5799999999999999999988 888999997643210 0111 223344444444333
Q ss_pred CCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCC---chhhHHHHhccc-eEEEEcCC
Q psy4538 57 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRP---QELDEAARRRLV-KRLYIPLP 132 (343)
Q Consensus 57 ~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~---~~l~~~l~~rf~-~~i~~~~P 132 (343)
.|.+|+|||++.+...... ..+..++..++.. ...++.+|++++.+ ..+++.+.+||. ..+.++++
T Consensus 128 ~~~vlilDE~~~l~~~~~~-------~~l~~l~~~~~~~---~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l 197 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYND-------DILYKLSRINSEV---NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPY 197 (386)
T ss_dssp SCEEEEEETHHHHHHSSCS-------THHHHHHHHHHSC---CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCC
T ss_pred CeEEEEEcChhhhhccCcC-------HHHHHHhhchhhc---CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCC
Confidence 3889999999998643211 2344455555443 24567888888776 467788888886 48999999
Q ss_pred CHHHHHHHHHHHHhhhC--CCCChhhHHHHHHHCCC--CCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHH
Q psy4538 133 DEQARCEIVTKLLRNIT--NSLTVDDIEEVGRMTTD--FSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDA 208 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~--~~~~~~~~~~la~~t~g--~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a 208 (343)
+.++..+++...+.... ..++++.+..+++.+.. .+++.+.++++.+...+... +...++.+++..+
T Consensus 198 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~---------~~~~i~~~~v~~a 268 (386)
T 2qby_A 198 NAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERM---------KDTKVKEEYVYMA 268 (386)
T ss_dssp CHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT---------TCSSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc---------CCCccCHHHHHHH
Confidence 99999999998876432 45678788888887761 36777778888876555432 2356899999888
Q ss_pred HHhcC
Q psy4538 209 LKTVR 213 (343)
Q Consensus 209 ~~~~~ 213 (343)
+....
T Consensus 269 ~~~~~ 273 (386)
T 2qby_A 269 KEEIE 273 (386)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87664
No 65
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.65 E-value=4.4e-15 Score=137.77 Aligned_cols=195 Identities=16% Similarity=0.152 Sum_probs=135.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----CCcEEEEecccccccc----------------cc-hHHHHHHHHHHHHH-hcCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----KATFFCISASTLTSKW----------------YG-EGEKMVRALFAVAS-VHQP 58 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----~~~~~~v~~~~l~~~~----------------~~-~~~~~l~~~~~~~~-~~~p 58 (343)
++|+||||+|||++++++++.+ +..+++++|....... .+ ........+..... ...|
T Consensus 47 ~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 126 (389)
T 1fnn_A 47 ATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLY 126 (389)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCe
Confidence 5799999999999999999998 6788899976543210 01 11222222222222 2458
Q ss_pred cEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCC---chhhHHHHhccce-EEEEcCCCH
Q psy4538 59 SIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRP---QELDEAARRRLVK-RLYIPLPDE 134 (343)
Q Consensus 59 ~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~---~~l~~~l~~rf~~-~i~~~~P~~ 134 (343)
.+|+|||+|.+. ......++..++........++.+|++++.+ ..+.+.+.+||.. .+.+++++.
T Consensus 127 ~vlilDE~~~l~-----------~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~ 195 (389)
T 1fnn_A 127 MFLVLDDAFNLA-----------PDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTK 195 (389)
T ss_dssp EEEEEETGGGSC-----------HHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBH
T ss_pred EEEEEECccccc-----------hHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCH
Confidence 899999999871 2334455555543211001467888888877 5677888888874 799999999
Q ss_pred HHHHHHHHHHHhhh--CCCCChhhHHHHHHHCC--------CCCHHHHHHHHHHHhcccccccccccccccCCcccChhH
Q psy4538 135 QARCEIVTKLLRNI--TNSLTVDDIEEVGRMTT--------DFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDD 204 (343)
Q Consensus 135 ~er~~il~~~l~~~--~~~~~~~~~~~la~~t~--------g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d 204 (343)
++..++++..+... ...++++.+..+++.+. +..++.+.++++.+...+..+ +...++.++
T Consensus 196 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~---------~~~~i~~~~ 266 (389)
T 1fnn_A 196 DQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQN---------GRKHIAPED 266 (389)
T ss_dssp HHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHT---------TCSSCCHHH
T ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHh---------CCCCcCHHH
Confidence 99999999888652 24678889999999984 346788888888887655433 235688899
Q ss_pred HHHHHHhcCCC
Q psy4538 205 FRDALKTVRPS 215 (343)
Q Consensus 205 ~~~a~~~~~ps 215 (343)
+..++......
T Consensus 267 v~~~~~~~~~~ 277 (389)
T 1fnn_A 267 VRKSSKEVLFG 277 (389)
T ss_dssp HHHHHHHHSCC
T ss_pred HHHHHHHHhhh
Confidence 98888876544
No 66
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=6.1e-16 Score=149.02 Aligned_cols=163 Identities=17% Similarity=0.161 Sum_probs=108.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHH-------HHHHHHHHH-----HhcCCcEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEK-------MVRALFAVA-----SVHQPSIIFIDEIDS 68 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~-------~l~~~~~~~-----~~~~p~vl~iDeid~ 68 (343)
+||+||||||||++|+++|++++.+++.+++++..........- .+..+|..+ ....++||+|||+|.
T Consensus 80 lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~ 159 (516)
T 1sxj_A 80 AMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDG 159 (516)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCc
Confidence 58999999999999999999999999999998875432111000 011112211 124678999999999
Q ss_pred ccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhh
Q psy4538 69 LLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNI 148 (343)
Q Consensus 69 l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~ 148 (343)
+...... ....+...++.. ..++++++++.....+++ +.+| ...+.|++|+.+++.+++...+...
T Consensus 160 l~~~~~~--------~l~~L~~~l~~~----~~~iIli~~~~~~~~l~~-l~~r-~~~i~f~~~~~~~~~~~L~~i~~~~ 225 (516)
T 1sxj_A 160 MSGGDRG--------GVGQLAQFCRKT----STPLILICNERNLPKMRP-FDRV-CLDIQFRRPDANSIKSRLMTIAIRE 225 (516)
T ss_dssp CCTTSTT--------HHHHHHHHHHHC----SSCEEEEESCTTSSTTGG-GTTT-SEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred cchhhHH--------HHHHHHHHHHhc----CCCEEEEEcCCCCccchh-hHhc-eEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 9653221 123344444332 334666655544444543 4444 4589999999999999999988887
Q ss_pred CCCCChhhHHHHHHHCCCCCHHHHHHHHHH
Q psy4538 149 TNSLTVDDIEEVGRMTTDFSGADMASLCRE 178 (343)
Q Consensus 149 ~~~~~~~~~~~la~~t~g~s~~dl~~l~~~ 178 (343)
+..++++.+..+++.+.| ..+.+.++++.
T Consensus 226 ~~~i~~~~l~~la~~s~G-diR~~i~~L~~ 254 (516)
T 1sxj_A 226 KFKLDPNVIDRLIQTTRG-DIRQVINLLST 254 (516)
T ss_dssp TCCCCTTHHHHHHHHTTT-CHHHHHHHHTH
T ss_pred CCCCCHHHHHHHHHHcCC-cHHHHHHHHHH
Confidence 778888899999998865 34444444433
No 67
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.64 E-value=8e-16 Score=142.52 Aligned_cols=204 Identities=22% Similarity=0.303 Sum_probs=127.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccc-ccccchH-HHHHHHHHHHH----HhcCCcEEEecccccccccCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLT-SKWYGEG-EKMVRALFAVA----SVHQPSIIFIDEIDSLLCQRS 74 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~-~~~~~~~-~~~l~~~~~~~----~~~~p~vl~iDeid~l~~~~~ 74 (343)
+||+||||||||++|+++|+.++.+++.+++..+. ..+.|.. ...+..++... ....+++|||||+|.+...+.
T Consensus 75 ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~ 154 (376)
T 1um8_A 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSE 154 (376)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-----
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcC
Confidence 58999999999999999999999999999998875 3333332 23344444432 123678999999999976532
Q ss_pred CCc---hhHHHHHHHHHHHhhccCCC-----------------CCCCcEEEEEecCC-----------------------
Q psy4538 75 DQE---NETSRRLKTEFLISLDGAST-----------------LDDDLVLVIGATNR----------------------- 111 (343)
Q Consensus 75 ~~~---~~~~~~~~~~ll~~l~~~~~-----------------~~~~~v~vi~~tn~----------------------- 111 (343)
... +.........|+..+++... ....++++|+++|.
T Consensus 155 ~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~ 234 (376)
T 1um8_A 155 NRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKM 234 (376)
T ss_dssp ---------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSC
T ss_pred CCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhh
Confidence 211 11112356777777774310 01134566766652
Q ss_pred ------------------CchhhHHHHhccceEEEEcCCCHHHHHHHHHH----HHh---------hhCCCCChhhHHHH
Q psy4538 112 ------------------PQELDEAARRRLVKRLYIPLPDEQARCEIVTK----LLR---------NITNSLTVDDIEEV 160 (343)
Q Consensus 112 ------------------~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~----~l~---------~~~~~~~~~~~~~l 160 (343)
...+.+.+.+|+...+.|++++.++..+++.. +++ +....++++.+..+
T Consensus 235 ~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 314 (376)
T 1um8_A 235 SKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEI 314 (376)
T ss_dssp CTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHH
T ss_pred hccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHH
Confidence 11356888899988899999999999998862 222 11334688889999
Q ss_pred HHHCC--CCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHH
Q psy4538 161 GRMTT--DFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRD 207 (343)
Q Consensus 161 a~~t~--g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~ 207 (343)
++... ....+.+.+++..+...++.+.... ......|+.+++..
T Consensus 315 ~~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~---~~~~~~i~~~~v~~ 360 (376)
T 1um8_A 315 AQLALERKTGARGLRAIIEDFCLDIMFDLPKL---KGSEVRITKDCVLK 360 (376)
T ss_dssp HHHHHHTTCTGGGHHHHHHHHHHHHHHTGGGG---TTSEEEECHHHHTT
T ss_pred HHHhcccccCcHHHHHHHHHHHHHHHhhccCC---CCCEEEEeHHHhcC
Confidence 88754 3578999999888876554432211 11223467666655
No 68
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=3.8e-15 Score=136.45 Aligned_cols=182 Identities=16% Similarity=0.160 Sum_probs=125.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC------CcEEEEecccccccccchHHHHHHHHHHHH-------------HhcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK------ATFFCISASTLTSKWYGEGEKMVRALFAVA-------------SVHQPSII 61 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~------~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~-------------~~~~p~vl 61 (343)
+||+||||+|||++++++++.++ ..++.+++++.... +.....+.. +... ....+.+|
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vl 137 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGI--SIVREKVKN-FARLTVSKPSKHDLENYPCPPYKII 137 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCH--HHHTTHHHH-HHHSCCCCCCTTHHHHSCCCSCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccch--HHHHHHHHH-HhhhcccccchhhcccCCCCCceEE
Confidence 58999999999999999999864 45788887764211 011111111 1110 01245699
Q ss_pred EecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHH
Q psy4538 62 FIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIV 141 (343)
Q Consensus 62 ~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il 141 (343)
+|||+|.+.. .....++..++... ....+|.++|.+..+.+.+++|+. .+.+++|+.++..+++
T Consensus 138 iiDE~~~l~~-----------~~~~~Ll~~le~~~----~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l 201 (353)
T 1sxj_D 138 ILDEADSMTA-----------DAQSALRRTMETYS----GVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRL 201 (353)
T ss_dssp EETTGGGSCH-----------HHHHHHHHHHHHTT----TTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHH
T ss_pred EEECCCccCH-----------HHHHHHHHHHHhcC----CCceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHH
Confidence 9999998842 22345555565542 235566678899999999999997 8999999999999999
Q ss_pred HHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHH
Q psy4538 142 TKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALK 210 (343)
Q Consensus 142 ~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~ 210 (343)
+..+...+..++++.+..+++.+.| +.+.+.++++.+...+-+. .....|+.+++..++.
T Consensus 202 ~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~~~~~~--------~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 202 RFISEQENVKCDDGVLERILDISAG-DLRRGITLLQSASKGAQYL--------GDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHTTTCCCCHHHHHHHHHHTSS-CHHHHHHHHHHTHHHHHHH--------CSCCCCCHHHHHHHHT
T ss_pred HHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCC--------ccCccccHHHHHHHhC
Confidence 9998877777899999999999886 5666666666554332111 0011588899888776
No 69
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.64 E-value=2e-15 Score=138.27 Aligned_cols=139 Identities=12% Similarity=0.123 Sum_probs=94.9
Q ss_pred CCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccC----CCCC-----CCcEEEEEecCCCc-hhhHHHHhccceE
Q psy4538 57 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGA----STLD-----DDLVLVIGATNRPQ-ELDEAARRRLVKR 126 (343)
Q Consensus 57 ~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~----~~~~-----~~~v~vi~~tn~~~-~l~~~l~~rf~~~ 126 (343)
.+++|||||+|.+.. .....++..++.. .... ..++++|+++|... .+++++++||...
T Consensus 144 ~~~vl~iDEi~~l~~-----------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~ 212 (350)
T 1g8p_A 144 NRGYLYIDECNLLED-----------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLS 212 (350)
T ss_dssp TTEEEEETTGGGSCH-----------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEE
T ss_pred CCCEEEEeChhhCCH-----------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceE
Confidence 378999999998732 2233444444421 1101 13688999998744 8999999999988
Q ss_pred EEEcCC-CHHHHHHHHHHHHh-----------------------------hhCCCCChhhHHHHHHHCCCC---CHHHHH
Q psy4538 127 LYIPLP-DEQARCEIVTKLLR-----------------------------NITNSLTVDDIEEVGRMTTDF---SGADMA 173 (343)
Q Consensus 127 i~~~~P-~~~er~~il~~~l~-----------------------------~~~~~~~~~~~~~la~~t~g~---s~~dl~ 173 (343)
+.+++| +.+++.+|++..+. .....++++.++.+++...+. +.+.+.
T Consensus 213 ~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~ 292 (350)
T 1g8p_A 213 VEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGEL 292 (350)
T ss_dssp EECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHH
T ss_pred EEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHH
Confidence 999999 56777788866311 122367888888888776543 568888
Q ss_pred HHHHHHhcccccccccccccccCCcccChhHHHHHHHhcCCC
Q psy4538 174 SLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRPS 215 (343)
Q Consensus 174 ~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ps 215 (343)
++++.|...|..+ +...|+.+|+..++..+...
T Consensus 293 ~ll~~a~~~A~~~---------~~~~v~~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 293 TLLRSARALAALE---------GATAVGRDHLKRVATMALSH 325 (350)
T ss_dssp HHHHHHHHHHHHT---------TCSBCCHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHc---------CCCcCCHHHHHHHHHHHHhh
Confidence 9988876655433 23459999999988766433
No 70
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.63 E-value=3.2e-16 Score=149.04 Aligned_cols=156 Identities=26% Similarity=0.318 Sum_probs=111.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----------CCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEeccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----------KATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLL 70 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~ 70 (343)
+||+||||||||++|+++|+.+ +.+++.+++. ..+.|+.+..++.+|..+....++||||| .
T Consensus 204 ~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~ 275 (468)
T 3pxg_A 204 PVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A 275 (468)
T ss_dssp EEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC-----C
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C
Confidence 4899999999999999999997 7888888887 55666777778889998887889999999 0
Q ss_pred ccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCc-----hhhHHHHhccceEEEEcCCCHHHHHHHHHHHH
Q psy4538 71 CQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ-----ELDEAARRRLVKRLYIPLPDEQARCEIVTKLL 145 (343)
Q Consensus 71 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~-----~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l 145 (343)
. ....+.++..+. .+.+.+|++||... .+++++.+||. .+.++.|+.+++.+|++.++
T Consensus 276 ----~------~~a~~~L~~~L~------~g~v~vI~at~~~e~~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 276 ----A------IDASNILKPSLA------RGELQCIGATTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp ------------------CCCTT------SSSCEEEEECCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTT
T ss_pred ----c------hhHHHHHHHhhc------CCCEEEEecCCHHHHHHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHH
Confidence 0 011122322222 44688999998876 68899999998 69999999999999999887
Q ss_pred hh----hCCCCChhhHHHHHHHCCCCC-----HHHHHHHHHHHhc
Q psy4538 146 RN----ITNSLTVDDIEEVGRMTTDFS-----GADMASLCREASL 181 (343)
Q Consensus 146 ~~----~~~~~~~~~~~~la~~t~g~s-----~~dl~~l~~~a~~ 181 (343)
.. .+..++++.+..++..+.+|. +.....++..|+.
T Consensus 339 ~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~ 383 (468)
T 3pxg_A 339 DRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS 383 (468)
T ss_dssp TTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHH
Confidence 66 456678888888888765443 4567777777653
No 71
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.63 E-value=1.5e-15 Score=152.85 Aligned_cols=168 Identities=16% Similarity=0.217 Sum_probs=122.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQE 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~ 77 (343)
+||+||||||||++|+++|+.+ +.+++.++|+.+...+.... ..+....+...++||||||+|.+.
T Consensus 524 ~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~----~~l~~~~~~~~~~vl~lDEi~~~~------- 592 (758)
T 3pxi_A 524 FIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSG----GQLTEKVRRKPYSVVLLDAIEKAH------- 592 (758)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGSC-------
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccccc----chhhHHHHhCCCeEEEEeCccccC-------
Confidence 5899999999999999999997 68999999999887655441 112223334567899999999772
Q ss_pred hhHHHHHHHHHHHhhccCCC-------CCCCcEEEEEecCCCch------------hhHHHHhccceEEEEcCCCHHHHH
Q psy4538 78 NETSRRLKTEFLISLDGAST-------LDDDLVLVIGATNRPQE------------LDEAARRRLVKRLYIPLPDEQARC 138 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~-------~~~~~v~vi~~tn~~~~------------l~~~l~~rf~~~i~~~~P~~~er~ 138 (343)
..+.+.|+..++.... ....++++|++||.+.. +.+.+.+||+..+.|++|+.+++.
T Consensus 593 ----~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~ 668 (758)
T 3pxi_A 593 ----PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLT 668 (758)
T ss_dssp ----HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHH
T ss_pred ----HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHH
Confidence 2455566666664321 12345788889986543 788999999889999999999999
Q ss_pred HHHHHHHhhh---------CCCCChhhHHHHHHH--CCCCCHHHHHHHHHHHhccc
Q psy4538 139 EIVTKLLRNI---------TNSLTVDDIEEVGRM--TTDFSGADMASLCREASLGP 183 (343)
Q Consensus 139 ~il~~~l~~~---------~~~~~~~~~~~la~~--t~g~s~~dl~~l~~~a~~~a 183 (343)
+|++.++... ...++++.++.|++. ...++.++|+++++.+...+
T Consensus 669 ~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~ 724 (758)
T 3pxi_A 669 EIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDR 724 (758)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHH
Confidence 9998877652 235688888889874 45567889999888765443
No 72
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.62 E-value=8.9e-15 Score=135.03 Aligned_cols=174 Identities=21% Similarity=0.201 Sum_probs=125.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc------------------------EEEEecccccccccchHHHHHHHHHHHHH--
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT------------------------FFCISASTLTSKWYGEGEKMVRALFAVAS-- 54 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~------------------------~~~v~~~~l~~~~~~~~~~~l~~~~~~~~-- 54 (343)
++|+||+|+|||++++++++.+++. ++.++.... .....++.++..+.
T Consensus 41 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~ 114 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYA 114 (373)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhc
Confidence 4799999999999999999988642 233332210 01112344444433
Q ss_pred --hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 55 --VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 55 --~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
...+.|++|||+|.+. ....+.++..++.. ...+++|++++.+..+.+.+.+|+ ..+.+++|
T Consensus 115 ~~~~~~~vliiDe~~~l~-----------~~~~~~Ll~~le~~----~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l 178 (373)
T 1jr3_A 115 PARGRFKVYLIDEVHMLS-----------RHSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILSRC-LQFHLKAL 178 (373)
T ss_dssp CSSSSSEEEEEECGGGSC-----------HHHHHHHHHHHHSC----CSSEEEEEEESCGGGSCHHHHTTS-EEEECCCC
T ss_pred cccCCeEEEEEECcchhc-----------HHHHHHHHHHHhcC----CCceEEEEEeCChHhCcHHHHhhe-eEeeCCCC
Confidence 2346899999999873 12345566666553 446778888888888999999998 58999999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHH
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALK 210 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~ 210 (343)
+.++..++++..++..+..++++.+..+++.+.| +++.+.++++.+...+. ..|+.+++...+.
T Consensus 179 ~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r~~~~~l~~~~~~~~-------------~~i~~~~v~~~~~ 242 (373)
T 1jr3_A 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQAIASGD-------------GQVSTQAVSAMLG 242 (373)
T ss_dssp CHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHHHHHHHHHHHHHHTT-------------TCBCHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcC-------------CcccHHHHHHHhC
Confidence 9999999999999888778888889999999976 78888888877643221 3467777666553
No 73
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.62 E-value=3.4e-15 Score=134.71 Aligned_cols=177 Identities=18% Similarity=0.168 Sum_probs=126.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-----CCcEEEEecccccccccchHHHHHHHHHHHHH--hcCCcEEEecccccccccC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-----KATFFCISASTLTSKWYGEGEKMVRALFAVAS--VHQPSIIFIDEIDSLLCQR 73 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-----~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~--~~~p~vl~iDeid~l~~~~ 73 (343)
+||+||||+|||++++++++.+ +.+++.+++++..+. ......+........ ...+.+++|||+|.+..
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-- 116 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-- 116 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH--
T ss_pred EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH--
Confidence 5899999999999999999986 346788888765331 111112222211111 13478999999998732
Q ss_pred CCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhCCCCC
Q psy4538 74 SDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLT 153 (343)
Q Consensus 74 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~ 153 (343)
.....++..++.. ...+.+|+++|.+..+.+.+.+|+. .+.+++|+.++..+++...++..+..++
T Consensus 117 ---------~~~~~L~~~le~~----~~~~~~i~~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~ 182 (319)
T 2chq_A 117 ---------DAQAALRRTMEMY----SKSCRFILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKIT 182 (319)
T ss_dssp ---------HHHHTTGGGTSSS----SSSEEEEEEESCGGGSCHHHHTTCE-EEECCCCCHHHHHHHHHHHHHTTCCCBC
T ss_pred ---------HHHHHHHHHHHhc----CCCCeEEEEeCChhhcchHHHhhCe-EEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 2233455555432 4567888889999999999999997 8999999999999999999988878889
Q ss_pred hhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHH
Q psy4538 154 VDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALK 210 (343)
Q Consensus 154 ~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~ 210 (343)
++.+..++..+.| +.+.+.++++.++.. ...++.+++...+.
T Consensus 183 ~~~l~~l~~~~~G-~~r~~~~~l~~~~~~--------------~~~i~~~~v~~~~~ 224 (319)
T 2chq_A 183 EDGLEALIYISGG-DFRKAINALQGAAAI--------------GEVVDADTIYQITA 224 (319)
T ss_dssp HHHHHHHHHTTTT-CHHHHHHHHHHHHHS--------------SSCBCHHHHHHHTT
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHc--------------CCCCCHHHHHHHHC
Confidence 9999999987765 666666666665432 13477788777654
No 74
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=1.1e-14 Score=131.97 Aligned_cols=178 Identities=17% Similarity=0.165 Sum_probs=124.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC-----CcEEEEecccccccccchHHHHHHHHHHHH--HhcCCcEEEecccccccccC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK-----ATFFCISASTLTSKWYGEGEKMVRALFAVA--SVHQPSIIFIDEIDSLLCQR 73 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~-----~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~--~~~~p~vl~iDeid~l~~~~ 73 (343)
+||+||||+|||++|+++++.++ ..++.+++++..+. ......+....... ....+.+++|||+|.+..
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-- 124 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ-- 124 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH--
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH--
Confidence 58999999999999999999863 34777777654221 01111111111110 013578999999998732
Q ss_pred CCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhCCCCC
Q psy4538 74 SDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLT 153 (343)
Q Consensus 74 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~ 153 (343)
.....++..++.. ...+.+|.+++.+..+.+.+.+|+. .+.+++|+.++..++++..+...+..++
T Consensus 125 ---------~~~~~L~~~le~~----~~~~~~i~~~~~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~ 190 (327)
T 1iqp_A 125 ---------DAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELT 190 (327)
T ss_dssp ---------HHHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTCEEC
T ss_pred ---------HHHHHHHHHHHhc----CCCCeEEEEeCCccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcCCCCC
Confidence 2234455555543 3456778888999999999999987 8899999999999999999888777788
Q ss_pred hhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHh
Q psy4538 154 VDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKT 211 (343)
Q Consensus 154 ~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 211 (343)
++.+..+++.+.| +.+.+.++++.+...+ ..++.+++......
T Consensus 191 ~~~~~~l~~~~~g-~~r~~~~~l~~~~~~~--------------~~i~~~~v~~~~~~ 233 (327)
T 1iqp_A 191 EEGLQAILYIAEG-DMRRAINILQAAAALD--------------KKITDENVFMVASR 233 (327)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTC--------------SEECHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC-CHHHHHHHHHHHHhcC--------------CCCCHHHHHHHHCC
Confidence 8899999998865 6777777777665321 24677776665543
No 75
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.61 E-value=2.2e-15 Score=151.83 Aligned_cols=170 Identities=16% Similarity=0.232 Sum_probs=124.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccccc------------ccchHHHHHHHHHHHHHhcCCcEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSK------------WYGEGEKMVRALFAVASVHQPSIIFIDEIDS 68 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~------------~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~ 68 (343)
+||+||||||||++|+++++.++.+++.++++++... +.|.... ..+........++||+|||+|.
T Consensus 491 ~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~ 568 (758)
T 1r6b_X 491 FLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEK 568 (758)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGG
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccc
Confidence 5899999999999999999999999999999877542 2222111 1223333445578999999997
Q ss_pred ccccCCCCchhHHHHHHHHHHHhhccCCCC-------CCCcEEEEEecCCCc-------------------------hhh
Q psy4538 69 LLCQRSDQENETSRRLKTEFLISLDGASTL-------DDDLVLVIGATNRPQ-------------------------ELD 116 (343)
Q Consensus 69 l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~v~vi~~tn~~~-------------------------~l~ 116 (343)
+. ..+.+.|+..++..... .-.++++|+|||... .++
T Consensus 569 ~~-----------~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 637 (758)
T 1r6b_X 569 AH-----------PDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFT 637 (758)
T ss_dssp SC-----------HHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSC
T ss_pred cC-----------HHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcC
Confidence 72 24556666666642210 114578999998743 678
Q ss_pred HHHHhccceEEEEcCCCHHHHHHHHHHHHhhh---------CCCCChhhHHHHHHHC--CCCCHHHHHHHHHHHhccc
Q psy4538 117 EAARRRLVKRLYIPLPDEQARCEIVTKLLRNI---------TNSLTVDDIEEVGRMT--TDFSGADMASLCREASLGP 183 (343)
Q Consensus 117 ~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~---------~~~~~~~~~~~la~~t--~g~s~~dl~~l~~~a~~~a 183 (343)
+.+++||+..+.|++|+.+++..|++.++... ...++++.++.+++.. ..+..+++.++++.+...+
T Consensus 638 ~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~ 715 (758)
T 1r6b_X 638 PEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKP 715 (758)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHH
T ss_pred HHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHH
Confidence 89999999889999999999999999888642 2356788888888764 3455889999988876543
No 76
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.61 E-value=9.6e-15 Score=132.00 Aligned_cols=174 Identities=15% Similarity=0.164 Sum_probs=126.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-----CCcEEEEecccccccccchHHHHHHHHHHHHH-------hcCCcEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-----KATFFCISASTLTSKWYGEGEKMVRALFAVAS-------VHQPSIIFIDEIDS 68 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-----~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~-------~~~p~vl~iDeid~ 68 (343)
++|+||+|+|||++++++++.+ +..++.+++.+..+ ...++..+.... ...+.+++|||+|.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~ 118 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADS 118 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECccc
Confidence 4899999999999999999986 34677888765322 223333343332 22478999999998
Q ss_pred ccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhh
Q psy4538 69 LLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNI 148 (343)
Q Consensus 69 l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~ 148 (343)
+.. .....++..++.. ...+.+|.+++.+..+.+.+++|+. .+.+++|+.++..++++..++..
T Consensus 119 l~~-----------~~~~~L~~~le~~----~~~~~~il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~ 182 (323)
T 1sxj_B 119 MTA-----------GAQQALRRTMELY----SNSTRFAFACNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLE 182 (323)
T ss_dssp SCH-----------HHHHTTHHHHHHT----TTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHH
T ss_pred CCH-----------HHHHHHHHHHhcc----CCCceEEEEeCChhhchhHHHhhce-EEeecCCCHHHHHHHHHHHHHHc
Confidence 742 1233455555443 3456777788889999999999987 89999999999999999998887
Q ss_pred CCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHh
Q psy4538 149 TNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKT 211 (343)
Q Consensus 149 ~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 211 (343)
+..++++.+..+++.+.| +++.+.++++.+... .+.++.+++...+..
T Consensus 183 ~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~~~--------------~~~i~~~~v~~~~~~ 230 (323)
T 1sxj_B 183 DVKYTNDGLEAIIFTAEG-DMRQAINNLQSTVAG--------------HGLVNADNVFKIVDS 230 (323)
T ss_dssp TCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHH--------------HSSBCHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc--------------CCCcCHHHHHHHHCC
Confidence 778888899999998865 566666666655421 134778888777654
No 77
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.59 E-value=5.2e-16 Score=140.75 Aligned_cols=80 Identities=51% Similarity=0.841 Sum_probs=66.8
Q ss_pred cCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHHhhhceEeccCCCCC
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQ 302 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allRR~d~~i~~~~P~~~ 302 (343)
..||||||||+|++.++|++......++++++||.+|+|+... ...|+||+|||+|+.||++++|||+..+++++|+.+
T Consensus 109 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~ 187 (322)
T 3eie_A 109 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND-SQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLA 187 (322)
T ss_dssp TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS-CCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHH
T ss_pred cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc-CCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHH
Confidence 3689999999999999998777778899999999999998531 345999999999999999999999999999999986
Q ss_pred C
Q psy4538 303 K 303 (343)
Q Consensus 303 ~ 303 (343)
+
T Consensus 188 ~ 188 (322)
T 3eie_A 188 A 188 (322)
T ss_dssp H
T ss_pred H
Confidence 4
No 78
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.57 E-value=5.1e-16 Score=139.43 Aligned_cols=80 Identities=41% Similarity=0.684 Sum_probs=69.7
Q ss_pred cCcceEeecchhhhhcccCCC---cchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEecc
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQ---ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIP 297 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~---~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~ 297 (343)
..||||||||+|++.+.|+.. .++..++++++||.+|||+.... .|+||+|||+|+.||++++| ||++.++++
T Consensus 107 ~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~--~v~vi~atn~~~~ld~al~r~gRf~~~i~i~ 184 (301)
T 3cf0_A 107 AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK--NVFIIGATNRPDIIDPAILRPGRLDQLIYIP 184 (301)
T ss_dssp TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS--SEEEEEEESCGGGSCGGGGSTTSSCEEEECC
T ss_pred cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC--CEEEEEecCCccccChHHhcCCccceEEecC
Confidence 368999999999999988643 34566889999999999987643 49999999999999999999 999999999
Q ss_pred CCCCCCC
Q psy4538 298 LPDEQKV 304 (343)
Q Consensus 298 ~P~~~~r 304 (343)
+|+.++|
T Consensus 185 ~p~~~~r 191 (301)
T 3cf0_A 185 LPDEKSR 191 (301)
T ss_dssp CCCHHHH
T ss_pred CcCHHHH
Confidence 9998765
No 79
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.57 E-value=8.2e-16 Score=141.20 Aligned_cols=79 Identities=52% Similarity=0.846 Sum_probs=65.4
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHHhhhceEeccCCCCCC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQK 303 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allRR~d~~i~~~~P~~~~ 303 (343)
.||||||||+|++.++|+.......++++++||++|+|+... ...|+||+|||+|+.||++++|||+..+++++|+.++
T Consensus 143 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~ 221 (355)
T 2qp9_X 143 KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND-SQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAA 221 (355)
T ss_dssp SSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC----CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHH
T ss_pred CCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc-CCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHH
Confidence 699999999999999998877788899999999999998641 2349999999999999999999999999999999864
No 80
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.57 E-value=4.7e-15 Score=122.90 Aligned_cols=123 Identities=24% Similarity=0.373 Sum_probs=85.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----------CCcEEEEecccccc--cccchHHHHHHHHHHHHHhc-CCcEEEecccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----------KATFFCISASTLTS--KWYGEGEKMVRALFAVASVH-QPSIIFIDEID 67 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----------~~~~~~v~~~~l~~--~~~~~~~~~l~~~~~~~~~~-~p~vl~iDeid 67 (343)
++|+||||||||++++++++.+ +.+++.+++..+.. .+.+.....+..++...... .+.+|+|||+|
T Consensus 46 vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~ 125 (187)
T 2p65_A 46 PILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIH 125 (187)
T ss_dssp EEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGG
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHH
Confidence 5899999999999999999987 77888888776642 23344555666666665543 67899999999
Q ss_pred cccccCC-CCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCc-----hhhHHHHhccceEEEEcCCC
Q psy4538 68 SLLCQRS-DQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ-----ELDEAARRRLVKRLYIPLPD 133 (343)
Q Consensus 68 ~l~~~~~-~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~-----~l~~~l~~rf~~~i~~~~P~ 133 (343)
.+..... ...... ....+...++ ...+.+|++++.+. .+++.+++||. .+.++.|+
T Consensus 126 ~l~~~~~~~~~~~~---~~~~l~~~~~------~~~~~ii~~~~~~~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 126 TVVGAGAVAEGALD---AGNILKPMLA------RGELRCIGATTVSEYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp GGSSSSSSCTTSCC---THHHHHHHHH------TTCSCEEEEECHHHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred HhcccccccccchH---HHHHHHHHHh------cCCeeEEEecCHHHHHHHHhccHHHHHhcC-cccCCCCC
Confidence 9975433 111111 1122222222 23467888887765 58899999999 58999885
No 81
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.57 E-value=1.2e-15 Score=144.19 Aligned_cols=80 Identities=58% Similarity=0.934 Sum_probs=71.9
Q ss_pred cCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHHhhhceEeccCCCCC
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQ 302 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allRR~d~~i~~~~P~~~ 302 (343)
..||||||||+|+++++|+.......++++++||++|+|+.. ....|+||+|||+|+.||++++|||+..+++++|+.+
T Consensus 226 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~-~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~ 304 (444)
T 2zan_A 226 NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAH 304 (444)
T ss_dssp SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSC-CCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHH
T ss_pred cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCccc-CCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHH
Confidence 368999999999999999888788889999999999999863 1344999999999999999999999999999999986
Q ss_pred C
Q psy4538 303 K 303 (343)
Q Consensus 303 ~ 303 (343)
+
T Consensus 305 ~ 305 (444)
T 2zan_A 305 A 305 (444)
T ss_dssp H
T ss_pred H
Confidence 4
No 82
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.56 E-value=7.8e-16 Score=145.46 Aligned_cols=80 Identities=34% Similarity=0.556 Sum_probs=66.1
Q ss_pred cCcceEeecchhhhhcccCCC---cchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEecc
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQ---ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIP 297 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~---~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~ 297 (343)
..||||||||+|++.++|+.+ .+....+++++||.+|||+... ..|+||+|||+|+.|||+++| |||+.|+|+
T Consensus 107 ~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~--~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~ 184 (476)
T 2ce7_A 107 HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK--EGIIVMAATNRPDILDPALLRPGRFDKKIVVD 184 (476)
T ss_dssp TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG--GTEEEEEEESCGGGSCGGGGSTTSSCEEEECC
T ss_pred cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC--CCEEEEEecCChhhhchhhcccCcceeEeecC
Confidence 369999999999999998643 2334568999999999998763 349999999999999999999 999999999
Q ss_pred CCCCCCC
Q psy4538 298 LPDEQKV 304 (343)
Q Consensus 298 ~P~~~~r 304 (343)
+|+.++|
T Consensus 185 ~Pd~~~R 191 (476)
T 2ce7_A 185 PPDMLGR 191 (476)
T ss_dssp CCCHHHH
T ss_pred CCCHHHH
Confidence 9998765
No 83
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=3.6e-14 Score=130.16 Aligned_cols=162 Identities=15% Similarity=0.245 Sum_probs=111.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC-----------------------------cEEEEecccccccccchHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA-----------------------------TFFCISASTLTSKWYGEGEKMVRALFA 51 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~-----------------------------~~~~v~~~~l~~~~~~~~~~~l~~~~~ 51 (343)
++|+||+|+|||++++++++++.. .++.++..+.... . ...++..+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~i~ 114 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNN---D-RIVIQELLK 114 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----C---C-HHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcCCc---c-hHHHHHHHH
Confidence 479999999999999999996421 1222332221100 0 012333333
Q ss_pred HHH--------------hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhH
Q psy4538 52 VAS--------------VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDE 117 (343)
Q Consensus 52 ~~~--------------~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~ 117 (343)
... ...|.+++|||++.+. ....+.++..++... ....+|.+|+.+..+.+
T Consensus 115 ~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~-----------~~~~~~L~~~le~~~----~~~~~Il~t~~~~~l~~ 179 (354)
T 1sxj_E 115 EVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT-----------KDAQAALRRTMEKYS----KNIRLIMVCDSMSPIIA 179 (354)
T ss_dssp HHTTTTC------------CCEEEEEECTTSSC-----------HHHHHHHHHHHHHST----TTEEEEEEESCSCSSCH
T ss_pred HHHHhccccccccccccCCCCeEEEEeCccccC-----------HHHHHHHHHHHHhhc----CCCEEEEEeCCHHHHHH
Confidence 221 2367799999999862 123345566665542 24677778888889999
Q ss_pred HHHhccceEEEEcCCCHHHHHHHHHHHHhhhCCCCC-hhhHHHHHHHCCCCCHHHHHHHHHHHhccc
Q psy4538 118 AARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLT-VDDIEEVGRMTTDFSGADMASLCREASLGP 183 (343)
Q Consensus 118 ~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~-~~~~~~la~~t~g~s~~dl~~l~~~a~~~a 183 (343)
.+++|+ ..+.|++|+.++..++++..++..+..++ ++.+..+++.+.| +.+++.++++.+...+
T Consensus 180 ~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 180 PIKSQC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNG-NLRVSLLMLESMALNN 244 (354)
T ss_dssp HHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHTT
T ss_pred HHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC
Confidence 999999 58999999999999999999988777778 8889999998865 6777777777665443
No 84
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.55 E-value=2.6e-15 Score=132.81 Aligned_cols=79 Identities=39% Similarity=0.646 Sum_probs=64.1
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEeccCCCC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDE 301 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~~P~~ 301 (343)
.|||+|+||+|++++.|+....+...+++++++.+|+|.+. ...++++++||+|+.||||++| |||+.|+|++|+.
T Consensus 103 ~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~--~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~ 180 (274)
T 2x8a_A 103 APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEA--RQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPP 180 (274)
T ss_dssp CSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCS--TTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCH
T ss_pred CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccc--cCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCH
Confidence 58999999999999888655444567899999999999886 3449999999999999999999 9999999999998
Q ss_pred CCC
Q psy4538 302 QKV 304 (343)
Q Consensus 302 ~~r 304 (343)
++|
T Consensus 181 ~~r 183 (274)
T 2x8a_A 181 ADR 183 (274)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 85
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=1.6e-13 Score=125.20 Aligned_cols=178 Identities=16% Similarity=0.147 Sum_probs=119.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC-----cEEEEecccccccccchHHHHHHHHHHHHH------hcCCcEEEecccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA-----TFFCISASTLTSKWYGEGEKMVRALFAVAS------VHQPSIIFIDEIDSL 69 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~-----~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~------~~~p~vl~iDeid~l 69 (343)
++|+||||||||++++++|+.+.. .+..+++++..+ ...++..+.... ...+.|++|||+|.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l 122 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAM 122 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGS
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCC
Confidence 479999999999999999998732 466777655321 122222222221 123689999999987
Q ss_pred cccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhC
Q psy4538 70 LCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNIT 149 (343)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~ 149 (343)
.. ...+.++..++.. .....+|.++|.+..+.+.+++|+. .+.+++++.++..+++...++..+
T Consensus 123 ~~-----------~~~~~L~~~le~~----~~~~~~il~~n~~~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~~~~ 186 (340)
T 1sxj_C 123 TN-----------AAQNALRRVIERY----TKNTRFCVLANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVLVHEK 186 (340)
T ss_dssp CH-----------HHHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHTTT
T ss_pred CH-----------HHHHHHHHHHhcC----CCCeEEEEEecCccccchhHHhhce-eEeccCCCHHHHHHHHHHHHHHcC
Confidence 31 2344566666654 2345667778999999999999997 789999999999999999887766
Q ss_pred CCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHH
Q psy4538 150 NSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALK 210 (343)
Q Consensus 150 ~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~ 210 (343)
..+++..+..+++.+.| ..+.+.++++.+...+.. .+...++.+++...+.
T Consensus 187 ~~i~~~~~~~i~~~s~G-~~r~~~~~l~~~~~~~~~---------~~~~~it~~~v~~~~~ 237 (340)
T 1sxj_C 187 LKLSPNAEKALIELSNG-DMRRVLNVLQSCKATLDN---------PDEDEISDDVIYECCG 237 (340)
T ss_dssp CCBCHHHHHHHHHHHTT-CHHHHHHHTTTTTTTTCS---------SSCCCBCHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcCC---------cccccccHHHHHHHhC
Confidence 77888888889987765 333433433333221111 0123578777776654
No 86
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.52 E-value=1.4e-14 Score=137.83 Aligned_cols=171 Identities=18% Similarity=0.186 Sum_probs=102.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC--cEEEEecc-----cccccccchHHHHHHHHHHHHHh---cCCcEEEeccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA--TFFCISAS-----TLTSKWYGEGEKMVRALFAVASV---HQPSIIFIDEIDSLL 70 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~--~~~~v~~~-----~l~~~~~~~~~~~l~~~~~~~~~---~~p~vl~iDeid~l~ 70 (343)
+||+||||||||++|+++|+.++. ++..+++. ++.+.+.+..... ...+..+.. ..++||||||++.+.
T Consensus 44 VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~ 122 (500)
T 3nbx_X 44 VFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAG 122 (500)
T ss_dssp EEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBCCTTSGGGCSEEEEESGGGCC
T ss_pred eEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhc
Confidence 589999999999999999998843 55555543 2222221111110 111211111 146799999998652
Q ss_pred ccCCCCchhHHHHHHHHHHHhhccCC-------CCCCCcEEEEEecCCCch---hhHHHHhccceEEEEcCCCH-HHHHH
Q psy4538 71 CQRSDQENETSRRLKTEFLISLDGAS-------TLDDDLVLVIGATNRPQE---LDEAARRRLVKRLYIPLPDE-QARCE 139 (343)
Q Consensus 71 ~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~~v~vi~~tn~~~~---l~~~l~~rf~~~i~~~~P~~-~er~~ 139 (343)
......++..++... ...+.+ ++|++||.... ..+++.+||...+.+++|+. +++.+
T Consensus 123 -----------~~~q~~LL~~lee~~v~i~G~~~~~~~~-~iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~ 190 (500)
T 3nbx_X 123 -----------PAILNTLLTAINERQFRNGAHVEKIPMR-LLVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRS 190 (500)
T ss_dssp -----------HHHHHHHHHHHHSSEEECSSSEEECCCC-EEEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHhccCCCCcCCcchh-hhhhccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 244455666664321 111223 45666765332 44689999998899999987 77888
Q ss_pred HHHHHHhhh-----------------------CCCCChhhHHHHHHHC---------CCCCHHHHHHHHHHHhcccc
Q psy4538 140 IVTKLLRNI-----------------------TNSLTVDDIEEVGRMT---------TDFSGADMASLCREASLGPV 184 (343)
Q Consensus 140 il~~~l~~~-----------------------~~~~~~~~~~~la~~t---------~g~s~~dl~~l~~~a~~~a~ 184 (343)
|++...... ...++++.++.+++.. .|.+++.+..+++.|...|.
T Consensus 191 IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~ 267 (500)
T 3nbx_X 191 MLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAF 267 (500)
T ss_dssp HHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHh
Confidence 887543211 2345565666666554 47889998888877654443
No 87
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.51 E-value=3.6e-14 Score=144.50 Aligned_cols=171 Identities=21% Similarity=0.213 Sum_probs=122.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccc------------cchHHHHHHHHHHHHHhcCCcEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKW------------YGEGEKMVRALFAVASVHQPSIIFIDE 65 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~------------~~~~~~~l~~~~~~~~~~~p~vl~iDe 65 (343)
+||+||||||||++|+++++.+ +.+++.++|+.+.... .|... ...+........+++|||||
T Consensus 591 vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDE 668 (854)
T 1qvr_A 591 FLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDE 668 (854)
T ss_dssp EEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC----------------CHHHHHHHCSSEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEec
Confidence 5899999999999999999998 7899999998765431 12111 11222333334578999999
Q ss_pred cccccccCCCCchhHHHHHHHHHHHhhccCCCC-------CCCcEEEEEecCCC--------------------------
Q psy4538 66 IDSLLCQRSDQENETSRRLKTEFLISLDGASTL-------DDDLVLVIGATNRP-------------------------- 112 (343)
Q Consensus 66 id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~v~vi~~tn~~-------------------------- 112 (343)
+|.+. ..+.+.|+..++..... .-.++++|+|||..
T Consensus 669 i~~l~-----------~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~ 737 (854)
T 1qvr_A 669 IEKAH-----------PDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQ 737 (854)
T ss_dssp GGGSC-----------HHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ccccC-----------HHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHH
Confidence 99762 34566677777643211 12357889999872
Q ss_pred chhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhh---------CCCCChhhHHHHHHHCC--CCCHHHHHHHHHHHhc
Q psy4538 113 QELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNI---------TNSLTVDDIEEVGRMTT--DFSGADMASLCREASL 181 (343)
Q Consensus 113 ~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~---------~~~~~~~~~~~la~~t~--g~s~~dl~~l~~~a~~ 181 (343)
..+.+.+.+|++..+.+.+|+.++...|+..++... ...++++.++.|++... .++.++|+++++.+..
T Consensus 738 ~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~ 817 (854)
T 1qvr_A 738 QHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 817 (854)
T ss_dssp TTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTH
T ss_pred hhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Confidence 234677888998888889999999999998887632 23568889999998766 6788999999988765
Q ss_pred ccc
Q psy4538 182 GPV 184 (343)
Q Consensus 182 ~a~ 184 (343)
.+.
T Consensus 818 ~~~ 820 (854)
T 1qvr_A 818 TPL 820 (854)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 88
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.51 E-value=1.5e-13 Score=120.88 Aligned_cols=169 Identities=15% Similarity=0.169 Sum_probs=105.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC---CcEEEEeccccccccc-----chHHHH-------HHHHHHHHHhcCCcEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK---ATFFCISASTLTSKWY-----GEGEKM-------VRALFAVASVHQPSIIFIDE 65 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~---~~~~~v~~~~l~~~~~-----~~~~~~-------l~~~~~~~~~~~p~vl~iDe 65 (343)
+||+||||||||++|+++++.++ .+++.++|+.+..... |..... ....+.. ..+++|||||
T Consensus 32 vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDE 108 (265)
T 2bjv_A 32 VLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDE 108 (265)
T ss_dssp EEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHH---TTTSEEEEES
T ss_pred EEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhhh---cCCcEEEEec
Confidence 58999999999999999999885 6899999987633210 000000 0011121 2467999999
Q ss_pred cccccccCCCCchhHHHHHHHHHHHhhccCC-------CCCCCcEEEEEecCCCc-------hhhHHHHhccc-eEEEEc
Q psy4538 66 IDSLLCQRSDQENETSRRLKTEFLISLDGAS-------TLDDDLVLVIGATNRPQ-------ELDEAARRRLV-KRLYIP 130 (343)
Q Consensus 66 id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~~v~vi~~tn~~~-------~l~~~l~~rf~-~~i~~~ 130 (343)
++.+.. .....++..++... ......+.+|++||... .+.+.+.+||. ..+.+|
T Consensus 109 i~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp 177 (265)
T 2bjv_A 109 LATAPM-----------MVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLP 177 (265)
T ss_dssp GGGSCH-----------HHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECC
T ss_pred hHhcCH-----------HHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCC
Confidence 998842 22344454444321 00123467888888742 35688888986 345555
Q ss_pred CCCH--HHHHHHHHHHHhh----hCC----CCChhhHHHHHHHCCCCCHHHHHHHHHHHhccc
Q psy4538 131 LPDE--QARCEIVTKLLRN----ITN----SLTVDDIEEVGRMTTDFSGADMASLCREASLGP 183 (343)
Q Consensus 131 ~P~~--~er~~il~~~l~~----~~~----~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a 183 (343)
+.+. ++...+++++++. .+. .++++.++.+.......+.+++.++++.+...+
T Consensus 178 ~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 178 PLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp CGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 5443 4445555554432 222 568888888887765567889999998876543
No 89
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.51 E-value=7.3e-14 Score=125.37 Aligned_cols=168 Identities=17% Similarity=0.231 Sum_probs=108.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccccccccc-------------chHHHHHHHHHHHHHhcCCcEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWY-------------GEGEKMVRALFAVASVHQPSIIFID 64 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~-------------~~~~~~l~~~~~~~~~~~p~vl~iD 64 (343)
|||+||||||||++|+++++.. +.+++.++|..+..... +... .....|..+ .+++||||
T Consensus 28 vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~-~~~g~~~~a---~~g~L~LD 103 (304)
T 1ojl_A 28 VLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADK-RREGRFVEA---DGGTLFLD 103 (304)
T ss_dssp EEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---C-CCCCHHHHH---TTSEEEEE
T ss_pred EEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhh-hhcCHHHhc---CCCEEEEe
Confidence 5899999999999999999976 57899999987643210 0000 011223333 36799999
Q ss_pred ccccccccCCCCchhHHHHHHHHHHHhhccCCC-------CCCCcEEEEEecCCC-------chhhHHHHhccc-eEEEE
Q psy4538 65 EIDSLLCQRSDQENETSRRLKTEFLISLDGAST-------LDDDLVLVIGATNRP-------QELDEAARRRLV-KRLYI 129 (343)
Q Consensus 65 eid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~v~vi~~tn~~-------~~l~~~l~~rf~-~~i~~ 129 (343)
|++.+.. .....++..++.... .....+.+|++||.. ..+.+.+..||. ..+.+
T Consensus 104 Ei~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~l 172 (304)
T 1ojl_A 104 EIGDISP-----------LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEM 172 (304)
T ss_dssp SCTTCCH-----------HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEEC
T ss_pred ccccCCH-----------HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEec
Confidence 9998832 234455555554321 012347788888875 124567777885 33555
Q ss_pred cCCC--HHHHHHHHHHHHhhh-------CCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhccc
Q psy4538 130 PLPD--EQARCEIVTKLLRNI-------TNSLTVDDIEEVGRMTTDFSGADMASLCREASLGP 183 (343)
Q Consensus 130 ~~P~--~~er~~il~~~l~~~-------~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a 183 (343)
|+.. .++...++++++... ...++++.+..+..+....+.+++.++++.++..+
T Consensus 173 PpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 173 PSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp CCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHC
T ss_pred cCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhC
Confidence 5554 345555666665432 13578888999998875568899999999887544
No 90
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.49 E-value=1.1e-14 Score=138.52 Aligned_cols=79 Identities=38% Similarity=0.653 Sum_probs=72.6
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEeccCCCC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDE 301 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~~P~~ 301 (343)
.||||||||||++.++|+...+....+++++||..||+.....+ |+||+|||+|+.||+++.| ||+..|++++|+.
T Consensus 297 ~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~--v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~ 374 (489)
T 3hu3_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH--VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374 (489)
T ss_dssp CSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC--EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCH
T ss_pred CCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc--eEEEEecCCccccCHHHhCCCcCceEEEeCCCCH
Confidence 68999999999999999888888889999999999999876444 9999999999999999999 9999999999998
Q ss_pred CCC
Q psy4538 302 QKV 304 (343)
Q Consensus 302 ~~r 304 (343)
++|
T Consensus 375 ~eR 377 (489)
T 3hu3_A 375 TGR 377 (489)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 91
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.47 E-value=1.3e-12 Score=118.82 Aligned_cols=152 Identities=16% Similarity=0.234 Sum_probs=107.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc------------------------EEEEecccccccccchHHHHHHHHHHHHHh-
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT------------------------FFCISASTLTSKWYGEGEKMVRALFAVASV- 55 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~------------------------~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~- 55 (343)
+||+||+|+|||++|+++|+.+.+. ++.+++.+- +. ......++.+++.+..
T Consensus 27 ~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~~--~~~i~~ir~l~~~~~~~ 103 (334)
T 1a5t_A 27 LLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-KN--TLGVDAVREVTEKLNEH 103 (334)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-CS--SBCHHHHHHHHHHTTSC
T ss_pred EEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-CC--CCCHHHHHHHHHHHhhc
Confidence 4899999999999999999988542 333333210 00 1123345566655432
Q ss_pred ---cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCC
Q psy4538 56 ---HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLP 132 (343)
Q Consensus 56 ---~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P 132 (343)
..+.|++|||+|.+. ....+.++..++.. ...+++|.+|+.+..+.+.+++|+. .+.|++|
T Consensus 104 ~~~~~~kvviIdead~l~-----------~~a~naLLk~lEep----~~~~~~Il~t~~~~~l~~ti~SRc~-~~~~~~~ 167 (334)
T 1a5t_A 104 ARLGGAKVVWVTDAALLT-----------DAAANALLKTLEEP----PAETWFFLATREPERLLATLRSRCR-LHYLAPP 167 (334)
T ss_dssp CTTSSCEEEEESCGGGBC-----------HHHHHHHHHHHTSC----CTTEEEEEEESCGGGSCHHHHTTSE-EEECCCC
T ss_pred cccCCcEEEEECchhhcC-----------HHHHHHHHHHhcCC----CCCeEEEEEeCChHhCcHHHhhcce-eeeCCCC
Confidence 346899999999883 23345677777653 4567788888889999999999996 7999999
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHH
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCR 177 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~ 177 (343)
+.++..++++... ..+++.+..++..+.| +++.+.++++
T Consensus 168 ~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G-~~r~a~~~l~ 206 (334)
T 1a5t_A 168 PEQYAVTWLSREV-----TMSQDALLAALRLSAG-SPGAALALFQ 206 (334)
T ss_dssp CHHHHHHHHHHHC-----CCCHHHHHHHHHHTTT-CHHHHHHTTS
T ss_pred CHHHHHHHHHHhc-----CCCHHHHHHHHHHcCC-CHHHHHHHhc
Confidence 9999998887764 4677788888888765 5555554443
No 92
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.45 E-value=3.6e-14 Score=130.41 Aligned_cols=81 Identities=72% Similarity=1.122 Sum_probs=65.2
Q ss_pred cCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHHhhhceEeccCCCCC
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQ 302 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allRR~d~~i~~~~P~~~ 302 (343)
..|+||||||+|++.++|+........+++++||.+|+|........|+||+|||+|+.||++++|||+..+++++|+.+
T Consensus 175 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~ 254 (357)
T 3d8b_A 175 QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEAS 254 (357)
T ss_dssp TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHH
T ss_pred cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHH
Confidence 35899999999999999987777788899999999999987544556999999999999999999999999999999986
Q ss_pred C
Q psy4538 303 K 303 (343)
Q Consensus 303 ~ 303 (343)
+
T Consensus 255 ~ 255 (357)
T 3d8b_A 255 A 255 (357)
T ss_dssp H
T ss_pred H
Confidence 4
No 93
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.44 E-value=2.1e-14 Score=139.98 Aligned_cols=189 Identities=19% Similarity=0.200 Sum_probs=117.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEE----ecccccccccchH-HHH---HHHHHHHHHhcCCcEEEeccccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI----SASTLTSKWYGEG-EKM---VRALFAVASVHQPSIIFIDEIDSLLCQ 72 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v----~~~~l~~~~~~~~-~~~---l~~~~~~~~~~~p~vl~iDeid~l~~~ 72 (343)
|||+||||||||++|+++++.++...+.. ++..+........ ... ....+..+ .+++++|||+|.+..
T Consensus 330 vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l~~- 405 (595)
T 3f9v_A 330 ILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLA---DGGIAVIDEIDKMRD- 405 (595)
T ss_dssp EEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHH---SSSEECCTTTTCCCS-
T ss_pred eEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEec---CCCcEEeehhhhCCH-
Confidence 58999999999999999999987665442 2222222111100 000 00011122 467999999998732
Q ss_pred CCCCchhHHHHHHHHHHHhhccCCC---------CCCCcEEEEEecCCCc-------------hhhHHHHhccc-eEEEE
Q psy4538 73 RSDQENETSRRLKTEFLISLDGAST---------LDDDLVLVIGATNRPQ-------------ELDEAARRRLV-KRLYI 129 (343)
Q Consensus 73 ~~~~~~~~~~~~~~~ll~~l~~~~~---------~~~~~v~vi~~tn~~~-------------~l~~~l~~rf~-~~i~~ 129 (343)
.....++..|+.... ..+.++.+|+++|+.. .+++++++||+ ..+..
T Consensus 406 ----------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~ 475 (595)
T 3f9v_A 406 ----------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILK 475 (595)
T ss_dssp ----------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEEC
T ss_pred ----------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeC
Confidence 223445555553221 1234678999999886 88999999997 45566
Q ss_pred cCCCHHHHHHHHHHHHhhhC-------------------------CCCChhhHHHHHHH--------------CCCCCHH
Q psy4538 130 PLPDEQARCEIVTKLLRNIT-------------------------NSLTVDDIEEVGRM--------------TTDFSGA 170 (343)
Q Consensus 130 ~~P~~~er~~il~~~l~~~~-------------------------~~~~~~~~~~la~~--------------t~g~s~~ 170 (343)
+.|+.+ ...|.++.+.... ..++++..+.+.+. ..+.+.+
T Consensus 476 ~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R 554 (595)
T 3f9v_A 476 DQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPR 554 (595)
T ss_dssp CTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTT
T ss_pred CCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHH
Confidence 777777 7778777665321 23444444555554 3456777
Q ss_pred HHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcC
Q psy4538 171 DMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVR 213 (343)
Q Consensus 171 dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 213 (343)
.+.++++.|...|..+ ....++.+|+.+|+.-+.
T Consensus 555 ~l~~lirla~a~A~l~---------~~~~V~~~dv~~Ai~l~~ 588 (595)
T 3f9v_A 555 QLEALIRISEAYAKMA---------LKAEVTREDAERAINIMR 588 (595)
T ss_dssp TTTHHHHHHHHHHHTT---------SSCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---------CcCCCCHHHHHHHHHHHH
Confidence 7777777665444333 345689999988887554
No 94
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.43 E-value=1.5e-13 Score=122.25 Aligned_cols=80 Identities=41% Similarity=0.629 Sum_probs=68.7
Q ss_pred cCcceEeecchhhhhcccCCCc---chhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEecc
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQE---NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIP 297 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~---~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~ 297 (343)
..||||||||+|.++++|++.. +....+.+.+++.+|+++.... .|++|+|||+|+.||++++| ||+..++++
T Consensus 109 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~--~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~ 186 (285)
T 3h4m_A 109 KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG--DVKIIGATNRPDILDPAILRPGRFDRIIEVP 186 (285)
T ss_dssp TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS--SEEEEEECSCGGGBCHHHHSTTSEEEEEECC
T ss_pred cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC--CEEEEEeCCCchhcCHHHcCCCcCCeEEEEC
Confidence 3689999999999999987653 3345788999999999987643 49999999999999999999 999999999
Q ss_pred CCCCCCC
Q psy4538 298 LPDEQKV 304 (343)
Q Consensus 298 ~P~~~~r 304 (343)
.|+.++|
T Consensus 187 ~p~~~~r 193 (285)
T 3h4m_A 187 APDEKGR 193 (285)
T ss_dssp CCCHHHH
T ss_pred CCCHHHH
Confidence 9998654
No 95
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.42 E-value=6e-12 Score=117.50 Aligned_cols=197 Identities=13% Similarity=0.118 Sum_probs=124.9
Q ss_pred CEE--eCCCCchHHHHHHHHHHHc---------CCcEEEEecccccccc----------------cch-HHHHHHHHHHH
Q psy4538 1 ILL--FGPPGTGKTLIGKCVAAQC---------KATFFCISASTLTSKW----------------YGE-GEKMVRALFAV 52 (343)
Q Consensus 1 iLl--~Gp~GtGKT~la~~la~~l---------~~~~~~v~~~~l~~~~----------------~~~-~~~~l~~~~~~ 52 (343)
++| +||+|+|||++++.+++.+ +..++++++....+.. .+. .......+...
T Consensus 53 ~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 132 (412)
T 1w5s_A 53 MIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDN 132 (412)
T ss_dssp EEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHH
T ss_pred EEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 367 9999999999999999876 4567888864321100 011 11222222222
Q ss_pred HH-hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCC--CcEEEEEecCCCc---hhh---HHHHhcc
Q psy4538 53 AS-VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDD--DLVLVIGATNRPQ---ELD---EAARRRL 123 (343)
Q Consensus 53 ~~-~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~--~~v~vi~~tn~~~---~l~---~~l~~rf 123 (343)
.. ...|.+|+|||+|.+...... ....+..++..+..... .. .++.+|++++.+. .++ +.+.+++
T Consensus 133 l~~~~~~~llvlDe~~~l~~~~~~-----~~~~l~~l~~~~~~~~~-~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~ 206 (412)
T 1w5s_A 133 LYVENHYLLVILDEFQSMLSSPRI-----AAEDLYTLLRVHEEIPS-RDGVNRIGFLLVASDVRALSYMREKIPQVESQI 206 (412)
T ss_dssp HHHHTCEEEEEEESTHHHHSCTTS-----CHHHHHHHHTHHHHSCC-TTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTC
T ss_pred HHhcCCeEEEEEeCHHHHhhccCc-----chHHHHHHHHHHHhccc-CCCCceEEEEEEeccccHHHHHhhhcchhhhhc
Confidence 22 245889999999988532111 12233334444443321 13 5788888887655 344 5666777
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHhhhC--CCCChhhHHHHHHHCC------CCCHHHHHHHHHHHhccccccccccccccc
Q psy4538 124 VKRLYIPLPDEQARCEIVTKLLRNIT--NSLTVDDIEEVGRMTT------DFSGADMASLCREASLGPVRSIDLSRIDAL 195 (343)
Q Consensus 124 ~~~i~~~~P~~~er~~il~~~l~~~~--~~~~~~~~~~la~~t~------g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~ 195 (343)
...+.+++++.++..+++...+.... ...+++.+..+++.+. | .++.+..++..+...+..+
T Consensus 207 ~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~--------- 276 (412)
T 1w5s_A 207 GFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDG-SARRAIVALKMACEMAEAM--------- 276 (412)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHT---------
T ss_pred CCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHc---------
Confidence 76699999999999999988765432 2467778888999888 6 6778888888775544332
Q ss_pred CCcccChhHHHHHHHhcC
Q psy4538 196 DVRPISIDDFRDALKTVR 213 (343)
Q Consensus 196 ~~~~i~~~d~~~a~~~~~ 213 (343)
....++.+++..++....
T Consensus 277 ~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 277 GRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp TCSSCCHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 234577888887776654
No 96
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.40 E-value=5.9e-14 Score=130.48 Aligned_cols=81 Identities=64% Similarity=1.058 Sum_probs=63.2
Q ss_pred cCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHHhhhceEeccCCCCC
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQ 302 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allRR~d~~i~~~~P~~~ 302 (343)
..|+||||||||.++++|+........++.++||..|+|........|+||+|||+++.||++++|||+..++|++|+.+
T Consensus 206 ~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~ 285 (389)
T 3vfd_A 206 LQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEE 285 (389)
T ss_dssp SSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHH
T ss_pred cCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHH
Confidence 36899999999999999987777778999999999999987644556999999999999999999999999999999986
Q ss_pred C
Q psy4538 303 K 303 (343)
Q Consensus 303 ~ 303 (343)
+
T Consensus 286 ~ 286 (389)
T 3vfd_A 286 T 286 (389)
T ss_dssp H
T ss_pred H
Confidence 4
No 97
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.39 E-value=1.1e-13 Score=123.72 Aligned_cols=82 Identities=65% Similarity=0.961 Sum_probs=65.8
Q ss_pred cCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCC-CCCcEEEEeecCCcccccHHHHHhhhceEeccCCCC
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTL-DDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDE 301 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~-~~~~v~vi~aTN~~~~lD~allRR~d~~i~~~~P~~ 301 (343)
..|+||||||+|++.++|+........++.++||.+|++.... .+..|++|+|||+|+.||++++|||+..+++++|+.
T Consensus 112 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~ 191 (297)
T 3b9p_A 112 MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDE 191 (297)
T ss_dssp TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCH
T ss_pred cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCH
Confidence 3689999999999999987666666788999999999998642 124599999999999999999999999999999998
Q ss_pred CCC
Q psy4538 302 QKV 304 (343)
Q Consensus 302 ~~r 304 (343)
++|
T Consensus 192 ~~r 194 (297)
T 3b9p_A 192 QTR 194 (297)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 98
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.37 E-value=2.5e-13 Score=129.03 Aligned_cols=80 Identities=36% Similarity=0.600 Sum_probs=68.4
Q ss_pred cCcceEeecchhhhhcccCCC---cchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEecc
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQ---ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIP 297 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~---~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~ 297 (343)
..|||+||||+|++.++|+.. ......+.+++||.+|+|.+. ...|+++++||+|+.||++++| |||+.|+|+
T Consensus 122 ~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~--~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~ 199 (499)
T 2dhr_A 122 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDILDPALLRPGRFDRQIAID 199 (499)
T ss_dssp SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS--SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECC
T ss_pred cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc--CccEEEEEecCChhhcCcccccccccceEEecC
Confidence 369999999999999888642 234456889999999999886 3348999999999999999999 999999999
Q ss_pred CCCCCCC
Q psy4538 298 LPDEQKV 304 (343)
Q Consensus 298 ~P~~~~r 304 (343)
+|+.++|
T Consensus 200 ~Pd~~~R 206 (499)
T 2dhr_A 200 APDVKGR 206 (499)
T ss_dssp CCCHHHH
T ss_pred CCCHHHH
Confidence 9998655
No 99
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.36 E-value=9.5e-13 Score=104.96 Aligned_cols=106 Identities=13% Similarity=0.177 Sum_probs=69.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQE 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~ 77 (343)
|||+||||||||++|+++++.. +.+++ ++|..+... ......+..+ .+++|||||+|.+..
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a---~~g~l~ldei~~l~~------ 90 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALA---QGGTLVLSHPEHLTR------ 90 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHH---TTSCEEEECGGGSCH------
T ss_pred EEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHc---CCcEEEEcChHHCCH------
Confidence 5899999999999999999987 67888 999877554 1223344444 367999999998832
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCc-------hhhHHHHhccc-eEEEEcC
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ-------ELDEAARRRLV-KRLYIPL 131 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~-------~l~~~l~~rf~-~~i~~~~ 131 (343)
.....++..+... ...+.+|++||.+. .+.+.+..|+. ..|.+|+
T Consensus 91 -----~~q~~Ll~~l~~~----~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~~i~lPp 143 (145)
T 3n70_A 91 -----EQQYHLVQLQSQE----HRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIACLP 143 (145)
T ss_dssp -----HHHHHHHHHHHSS----SCSSCEEEEESSCHHHHHHHSCCCHHHHHHHHHHEEECCC
T ss_pred -----HHHHHHHHHHhhc----CCCEEEEEECCcCHHHHHHcCCCCHHHHHHhcCCEEeCCC
Confidence 2334455555332 23456777787642 23455555554 3455554
No 100
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.33 E-value=6.8e-13 Score=116.16 Aligned_cols=80 Identities=36% Similarity=0.546 Sum_probs=67.9
Q ss_pred cCcceEeecchhhhhcccCCCc---chhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEecc
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQE---NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIP 297 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~---~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~ 297 (343)
..||++|+||+|++.++|+... .....+.++++|++|+++... ..|+||+|||+|+.||++++| ||+..++++
T Consensus 103 ~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~ 180 (257)
T 1lv7_A 103 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN--EGIIVIAATNRPDVLDPALLRPGRFDRQVVVG 180 (257)
T ss_dssp TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS--SCEEEEEEESCTTTSCGGGGSTTSSCEEEECC
T ss_pred cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC--CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeC
Confidence 3589999999999999886432 223457899999999998763 349999999999999999999 999999999
Q ss_pred CCCCCCC
Q psy4538 298 LPDEQKV 304 (343)
Q Consensus 298 ~P~~~~r 304 (343)
+|+.++|
T Consensus 181 ~P~~~~r 187 (257)
T 1lv7_A 181 LPDVRGR 187 (257)
T ss_dssp CCCHHHH
T ss_pred CCCHHHH
Confidence 9998755
No 101
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.33 E-value=2e-13 Score=119.68 Aligned_cols=79 Identities=38% Similarity=0.591 Sum_probs=57.5
Q ss_pred CcceEeecchhhhhcccCCCc----chhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEecc
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQE----NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIP 297 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~----~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~ 297 (343)
.||||||||+|.++++|+... +......+++||.+|++.... ..|++|+|||.++.||++++| ||+..++++
T Consensus 98 ~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~--~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~ 175 (262)
T 2qz4_A 98 APCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT--DHVIVLASTNRADILDGALMRPGRLDRHVFID 175 (262)
T ss_dssp CSEEEEEECC-------------------CHHHHHHHHHHHTCCTT--CCEEEEEEESCGGGGGSGGGSTTSCCEEEECC
T ss_pred CCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC--CCEEEEecCCChhhcCHHHhcCCcCCeEEEeC
Confidence 489999999999999886543 334567899999999998763 349999999999999999999 999999999
Q ss_pred CCCCCCC
Q psy4538 298 LPDEQKV 304 (343)
Q Consensus 298 ~P~~~~r 304 (343)
+|+.++|
T Consensus 176 ~p~~~~r 182 (262)
T 2qz4_A 176 LPTLQER 182 (262)
T ss_dssp SCCHHHH
T ss_pred CcCHHHH
Confidence 9998754
No 102
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.31 E-value=3.9e-13 Score=118.39 Aligned_cols=80 Identities=36% Similarity=0.567 Sum_probs=63.5
Q ss_pred CcceEeecchhhhhcccCCCc----chhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEecc
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQE----NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIP 297 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~----~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~ 297 (343)
.|+||||||+|.+.++|+.+. +....+++++||.+|++... ....|++|+|||+++.||++++| ||+..++|+
T Consensus 103 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~ 181 (268)
T 2r62_A 103 APSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS-ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVD 181 (268)
T ss_dssp CSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC-SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCC
T ss_pred CCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc-CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEec
Confidence 589999999999998874322 22335678999999998764 23448999999999999999999 999999999
Q ss_pred CCCCCCC
Q psy4538 298 LPDEQKV 304 (343)
Q Consensus 298 ~P~~~~r 304 (343)
+|+.++|
T Consensus 182 ~p~~~~r 188 (268)
T 2r62_A 182 KPDFNGR 188 (268)
T ss_dssp CCCTTTH
T ss_pred CcCHHHH
Confidence 9998875
No 103
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.30 E-value=1.2e-12 Score=116.98 Aligned_cols=79 Identities=15% Similarity=0.220 Sum_probs=52.3
Q ss_pred cCcceEeecchhhhhcccCCCcc--hhHHHHHHHHHHhhcCCCC---------CCCCcEEEEeecCCcccccHHHHH--h
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQEN--ETSRRLKTEFLISLDGAST---------LDDDLVLVIGATNRPQELDEAARR--R 289 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~--~~~~r~v~~lL~~mdg~~~---------~~~~~v~vi~aTN~~~~lD~allR--R 289 (343)
..||||||||+|++++++++... ....++.++||+.||+... .....|+||+|||+++.||+|++| |
T Consensus 98 ~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R 177 (293)
T 3t15_A 98 GNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGR 177 (293)
T ss_dssp SSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHH
T ss_pred CCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCC
Confidence 46999999999999997754322 2456788999999986541 123349999999999999999999 9
Q ss_pred hhceEeccCCCCCC
Q psy4538 290 LVKRLYIPLPDEQK 303 (343)
Q Consensus 290 ~d~~i~~~~P~~~~ 303 (343)
||..++ +|+.++
T Consensus 178 ~d~~i~--~P~~~~ 189 (293)
T 3t15_A 178 MEKFYW--APTRED 189 (293)
T ss_dssp EEEEEE--CCCHHH
T ss_pred CceeEe--CcCHHH
Confidence 999998 466654
No 104
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.29 E-value=2.1e-12 Score=102.72 Aligned_cols=106 Identities=13% Similarity=0.177 Sum_probs=71.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENET 80 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~ 80 (343)
|||+||||||||++|+++++..+ +++.++|..+...+ ....+..+ .+++|||||+|.+..
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~a---~~~~l~lDei~~l~~--------- 89 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQKA---EGGVLYVGDIAQYSR--------- 89 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHHHT---TTSEEEEEECTTCCH---------
T ss_pred EEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHHhC---CCCeEEEeChHHCCH---------
Confidence 58999999999999999999888 99999998765432 33444443 367999999998832
Q ss_pred HHHHHHHHHHhhccCCCCCCCcEEEEEecCCC-ch----hhHHHHhccc-eEEEEcC
Q psy4538 81 SRRLKTEFLISLDGASTLDDDLVLVIGATNRP-QE----LDEAARRRLV-KRLYIPL 131 (343)
Q Consensus 81 ~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~-~~----l~~~l~~rf~-~~i~~~~ 131 (343)
.....++..++... ...+.+|++||.+ .. +.+.+..|+. ..|.+|+
T Consensus 90 --~~q~~Ll~~l~~~~---~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~i~lPp 141 (143)
T 3co5_A 90 --NIQTGITFIIGKAE---RCRVRVIASCSYAAGSDGISCEEKLAGLFSESVVRIPP 141 (143)
T ss_dssp --HHHHHHHHHHHHHT---TTTCEEEEEEEECTTTC--CHHHHHHHHSSSEEEEECC
T ss_pred --HHHHHHHHHHHhCC---CCCEEEEEecCCCHHHHHhCccHHHHHHhcCcEEeCCC
Confidence 22233444444321 2345677777643 22 5566777765 4566665
No 105
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.29 E-value=1.4e-12 Score=114.01 Aligned_cols=79 Identities=35% Similarity=0.582 Sum_probs=64.4
Q ss_pred CcceEeecchhhhhcccCCC---cchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEeccC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQ---ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPL 298 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~---~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~~ 298 (343)
.||++|+||+|.+.++|+.. ......+.+++++.+|+|.+. ...++++++||+|+.||++++| |||+.+++++
T Consensus 108 ~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~--~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~ 185 (254)
T 1ixz_A 108 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDA 185 (254)
T ss_dssp SSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT--TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCS
T ss_pred CCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC--CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCC
Confidence 58999999999999887532 234557889999999999876 3448999999999999999999 9999999999
Q ss_pred CCCCCC
Q psy4538 299 PDEQKV 304 (343)
Q Consensus 299 P~~~~r 304 (343)
|+.++|
T Consensus 186 p~~~~r 191 (254)
T 1ixz_A 186 PDVKGR 191 (254)
T ss_dssp CCHHHH
T ss_pred cCHHHH
Confidence 998754
No 106
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=3.3e-11 Score=107.89 Aligned_cols=122 Identities=11% Similarity=0.145 Sum_probs=91.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHc------CCcEEEEecccccccccchHHHHHHHHHHHHHh----cCCcEEEeccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC------KATFFCISASTLTSKWYGEGEKMVRALFAVASV----HQPSIIFIDEIDSLL 70 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l------~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~----~~p~vl~iDeid~l~ 70 (343)
+|||||||+|||++++++|+.+ ...++.+++++- ..+...++.++..+.. ....|++|||+|.+-
T Consensus 21 ~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt 95 (305)
T 2gno_A 21 ILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT 95 (305)
T ss_dssp EEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC
T ss_pred EEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCCHHHHHHHHHHHhhccccCCceEEEeccHHHhC
Confidence 4899999999999999999864 346777776531 1123345666665542 234699999999883
Q ss_pred ccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHHHHHHHHHHH
Q psy4538 71 CQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLL 145 (343)
Q Consensus 71 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l 145 (343)
....+.|+..++.. ...+++|.+|+.+..+.+.+++| .+.|++|+.++..++++..+
T Consensus 96 -----------~~a~naLLk~LEep----~~~t~fIl~t~~~~kl~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 96 -----------QQAANAFLKALEEP----PEYAVIVLNTRRWHYLLPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp -----------HHHHHHTHHHHHSC----CTTEEEEEEESCGGGSCHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHhCC----CCCeEEEEEECChHhChHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 23356688888764 44567777788889999999999 89999999999999888776
No 107
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.27 E-value=9.9e-12 Score=121.82 Aligned_cols=135 Identities=19% Similarity=0.295 Sum_probs=87.4
Q ss_pred CCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCC-----------------CCCCCcEEEEEecCCC--chhhH
Q psy4538 57 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAS-----------------TLDDDLVLVIGATNRP--QELDE 117 (343)
Q Consensus 57 ~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------------~~~~~~v~vi~~tn~~--~~l~~ 117 (343)
.+++|||||++.+. ......|+..++... ......+.+|++||.. ..+++
T Consensus 201 ~~gvL~LDEi~~l~-----------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~ 269 (604)
T 3k1j_A 201 HKGVLFIDEIATLS-----------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHP 269 (604)
T ss_dssp TTSEEEETTGGGSC-----------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCH
T ss_pred CCCEEEEechhhCC-----------HHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCH
Confidence 46799999999872 123334444444211 0112357789999876 67999
Q ss_pred HHHhccc---eEEEEcCC---CHHHHHHHHHHHHhhh-----CCCCChhhHHHHHHHC---CCC------CHHHHHHHHH
Q psy4538 118 AARRRLV---KRLYIPLP---DEQARCEIVTKLLRNI-----TNSLTVDDIEEVGRMT---TDF------SGADMASLCR 177 (343)
Q Consensus 118 ~l~~rf~---~~i~~~~P---~~~er~~il~~~l~~~-----~~~~~~~~~~~la~~t---~g~------s~~dl~~l~~ 177 (343)
++++||. ..+.++.. ..+....+++.+.+.. ...++++.+..+.+.. .|. +.+++.++++
T Consensus 270 ~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr 349 (604)
T 3k1j_A 270 ALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVR 349 (604)
T ss_dssp HHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHH
T ss_pred HHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHH
Confidence 9999996 45555332 3455666665554432 2467888888888754 553 7899999999
Q ss_pred HHhcccccccccccccccCCcccChhHHHHHHHh
Q psy4538 178 EASLGPVRSIDLSRIDALDVRPISIDDFRDALKT 211 (343)
Q Consensus 178 ~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 211 (343)
.|...|..+ ....|+.+|+.+++..
T Consensus 350 ~A~~~A~~~---------~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 350 AAGDIAVKK---------GKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHT---------TCSSBCHHHHHHHHHH
T ss_pred HHHHHHHhc---------CcccccHHHHHHHHHh
Confidence 886555433 3456888888888754
No 108
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.24 E-value=6.8e-12 Score=111.12 Aligned_cols=79 Identities=35% Similarity=0.582 Sum_probs=64.8
Q ss_pred CcceEeecchhhhhcccCCC---cchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHH--hhhceEeccC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQ---ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPL 298 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~---~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allR--R~d~~i~~~~ 298 (343)
.|+++|+||+|.+..+|+.. ......+.+++++.+|+|.+. ...++++++||+|+.||++++| |||..|++++
T Consensus 132 ~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~--~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~ 209 (278)
T 1iy2_A 132 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDA 209 (278)
T ss_dssp CSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT--TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCC
T ss_pred CCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC--CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCC
Confidence 58999999999998877532 233457889999999999875 3348999999999999999999 9999999999
Q ss_pred CCCCCC
Q psy4538 299 PDEQKV 304 (343)
Q Consensus 299 P~~~~r 304 (343)
|+.++|
T Consensus 210 p~~~~r 215 (278)
T 1iy2_A 210 PDVKGR 215 (278)
T ss_dssp CCHHHH
T ss_pred cCHHHH
Confidence 998755
No 109
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.12 E-value=2.8e-10 Score=125.69 Aligned_cols=138 Identities=21% Similarity=0.311 Sum_probs=91.3
Q ss_pred CEEeCCCCchHHHHHHHH-HHHcCCcEEEEecccccccccchHHHHHHHHHHHHH---------------hcCCcEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCV-AAQCKATFFCISASTLTSKWYGEGEKMVRALFAVAS---------------VHQPSIIFID 64 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~l-a~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~---------------~~~p~vl~iD 64 (343)
+||+||||||||++|+.+ ++..+..++.++++...+. ..+...+.... ...++|+|||
T Consensus 1270 vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiD 1343 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCD 1343 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCCCceEEEEec
Confidence 589999999999999555 4444777888887665332 22333333220 1234699999
Q ss_pred ccccccccCCCCchhHHHHHHHHHHHhhccCCCC-C-----CCcEEEEEecCCCc-----hhhHHHHhccceEEEEcCCC
Q psy4538 65 EIDSLLCQRSDQENETSRRLKTEFLISLDGASTL-D-----DDLVLVIGATNRPQ-----ELDEAARRRLVKRLYIPLPD 133 (343)
Q Consensus 65 eid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~-----~~~v~vi~~tn~~~-----~l~~~l~~rf~~~i~~~~P~ 133 (343)
|++....... .......++.+++.. .+.... . -.++.+|+++|++. .+++++.||| ..+.++.|+
T Consensus 1344 Einmp~~d~y--g~q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~i~~P~ 1419 (2695)
T 4akg_A 1344 EINLPKLDKY--GSQNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AILYLGYPS 1419 (2695)
T ss_dssp TTTCSCCCSS--SCCHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEEECCCCT
T ss_pred cccccccccc--CchhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEEEeCCCC
Confidence 9985432221 122334445555432 111111 1 12478999999994 8999999999 589999999
Q ss_pred HHHHHHHHHHHHhhh
Q psy4538 134 EQARCEIVTKLLRNI 148 (343)
Q Consensus 134 ~~er~~il~~~l~~~ 148 (343)
.+++..|+..+++..
T Consensus 1420 ~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1420 GKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888654
No 110
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.11 E-value=1.2e-10 Score=123.54 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=43.2
Q ss_pred CcceEeecchhhhhccc---CCC---cchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCc
Q psy4538 224 QPSIIFIDEIDSLLCQR---SDQ---ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRP 279 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R---~~~---~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~ 279 (343)
.||++||||+|+|+++| |+. +.+...|+++|+|++|+|+....+ |+|| +||+.
T Consensus 1160 ~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~--v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1160 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN--TLLI-FINQI 1218 (1706)
T ss_dssp CCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTT--CEEE-EEECE
T ss_pred CCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhccCC--eEEE-Eeccc
Confidence 58999999999999994 322 237889999999999999887555 7777 78876
No 111
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.11 E-value=4.7e-11 Score=85.64 Aligned_cols=77 Identities=22% Similarity=0.371 Sum_probs=67.6
Q ss_pred EcCCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHH
Q psy4538 129 IPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDA 208 (343)
Q Consensus 129 ~~~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a 208 (343)
-.+|+.++|.+||+.++++.... ++.++..||+.|.|||++||.++|++|++.|+++ ....|+.+||..+
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~---------~~~~I~~~df~~A 77 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRE---------RRVHVTQEDFEMA 77 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEEC-TTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHT---------TCSEECHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH---------cCCCCCHHHHHHH
Confidence 46899999999999999886543 4557999999999999999999999999999887 3467999999999
Q ss_pred HHhcCCC
Q psy4538 209 LKTVRPS 215 (343)
Q Consensus 209 ~~~~~ps 215 (343)
+.++.|.
T Consensus 78 l~~v~p~ 84 (86)
T 2krk_A 78 VAKVMQK 84 (86)
T ss_dssp HHHHHCC
T ss_pred HHHHccC
Confidence 9998775
No 112
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.09 E-value=1.3e-10 Score=81.99 Aligned_cols=75 Identities=24% Similarity=0.420 Sum_probs=65.7
Q ss_pred cCCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHH
Q psy4538 130 PLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDAL 209 (343)
Q Consensus 130 ~~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~ 209 (343)
|+|+.++|.+||+.++++.... ++.++..|++.|.||||+||.++|++|++.++++ ....|+.+||..++
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~-~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~---------~~~~i~~~d~~~Al 70 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRE---------RRVHVTQEDFEMAV 70 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEEC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT---------TCSEECHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---------CCCCCCHHHHHHHH
Confidence 6899999999999999886542 4558999999999999999999999999999887 45689999999999
Q ss_pred HhcCC
Q psy4538 210 KTVRP 214 (343)
Q Consensus 210 ~~~~p 214 (343)
+++..
T Consensus 71 ~~v~~ 75 (78)
T 3kw6_A 71 AKVMQ 75 (78)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 88643
No 113
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.04 E-value=4e-10 Score=80.52 Aligned_cols=75 Identities=27% Similarity=0.348 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhc
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTV 212 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 212 (343)
+.++|.+||+.++++.+.. ++.++..+++.|.||||+||.++|++|++.++++ ....|+.+||..++.++
T Consensus 2 d~~~R~~Il~~~l~~~~~~-~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~---------~~~~i~~~df~~Al~~~ 71 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLS-EEVDLEDYVARPDKISGADINSICQESGMLAVRE---------NRYIVLAKDFEKAYKTV 71 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBC-TTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTS---------CCSSBCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---------ccCCcCHHHHHHHHHHH
Confidence 6789999999999886543 4557999999999999999999999999999987 34679999999999999
Q ss_pred CCCcc
Q psy4538 213 RPSVC 217 (343)
Q Consensus 213 ~ps~~ 217 (343)
+|+.+
T Consensus 72 ~ps~~ 76 (83)
T 3aji_B 72 IKKDE 76 (83)
T ss_dssp CC---
T ss_pred ccCch
Confidence 99977
No 114
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.01 E-value=1e-09 Score=87.63 Aligned_cols=100 Identities=21% Similarity=0.332 Sum_probs=63.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQE 77 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~ 77 (343)
++|+||+|+|||+++++++..+ |...++++..++... ....++.+|+|||++.+...
T Consensus 39 ~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~----- 98 (149)
T 2kjq_A 39 IYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNE----- 98 (149)
T ss_dssp EEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSH-----
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChH-----
Confidence 4789999999999999999987 667888888776543 11245889999999876321
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhh--HHHHhccceEE
Q psy4538 78 NETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELD--EAARRRLVKRL 127 (343)
Q Consensus 78 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~--~~l~~rf~~~i 127 (343)
....+..+++.+... +..++++.+...+..+. +.+.+|+..-.
T Consensus 99 ---~~~~l~~li~~~~~~----g~~~iiits~~~p~~l~~~~~L~SRl~~g~ 143 (149)
T 2kjq_A 99 ---EQALLFSIFNRFRNS----GKGFLLLGSEYTPQQLVIREDLRTRMAYCL 143 (149)
T ss_dssp ---HHHHHHHHHHHHHHH----TCCEEEEEESSCTTTSSCCHHHHHHGGGSE
T ss_pred ---HHHHHHHHHHHHHHc----CCcEEEEECCCCHHHccccHHHHHHHhcCe
Confidence 122333333333211 12224444433454332 88888886433
No 115
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.00 E-value=4.3e-09 Score=97.46 Aligned_cols=181 Identities=18% Similarity=0.249 Sum_probs=110.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC---CcEEEEeccccccccc-------------chHHHHHHHHHHHHHhcCCcEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK---ATFFCISASTLTSKWY-------------GEGEKMVRALFAVASVHQPSIIFID 64 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~---~~~~~v~~~~l~~~~~-------------~~~~~~l~~~~~~~~~~~p~vl~iD 64 (343)
++++|++||||+++|+++....+ .+|+.++|..+..... |... .....|..+ ..+.||||
T Consensus 163 vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~-~~~g~~~~a---~~gtlfld 238 (387)
T 1ny5_A 163 VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVS-SKEGFFELA---DGGTLFLD 238 (387)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCS-CBCCHHHHT---TTSEEEEE
T ss_pred eEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCccc-ccCCceeeC---CCcEEEEc
Confidence 58999999999999999988764 6899999987643210 0000 001123332 36799999
Q ss_pred ccccccccCCCCchhHHHHHHHHHHHhhccCCC-------CCCCcEEEEEecCCC-------chhhHHHHhccc-eEEEE
Q psy4538 65 EIDSLLCQRSDQENETSRRLKTEFLISLDGAST-------LDDDLVLVIGATNRP-------QELDEAARRRLV-KRLYI 129 (343)
Q Consensus 65 eid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~v~vi~~tn~~-------~~l~~~l~~rf~-~~i~~ 129 (343)
|++.+. ...+..++..++.... .....+.+|++||.. ..+.+.+..|+. ..+.+
T Consensus 239 ei~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~l 307 (387)
T 1ny5_A 239 EIGELS-----------LEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEI 307 (387)
T ss_dssp SGGGCC-----------HHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEEC
T ss_pred ChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecC
Confidence 999883 2334445555443211 012346788888763 223444554554 33444
Q ss_pred cCCCH--HHHHHHHHHHHhh----hC---CCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCccc
Q psy4538 130 PLPDE--QARCEIVTKLLRN----IT---NSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPI 200 (343)
Q Consensus 130 ~~P~~--~er~~il~~~l~~----~~---~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i 200 (343)
|+... ++...++.+++.. ++ ..++++.+..|..+..-.+.++++++++.++..+-. ..|
T Consensus 308 PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~~~------------~~i 375 (387)
T 1ny5_A 308 PPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEG------------KFI 375 (387)
T ss_dssp CCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCCS------------SEE
T ss_pred CcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCCC------------CcC
Confidence 44322 4444455555543 22 235788888888887667889999999998765421 346
Q ss_pred ChhHHHHH
Q psy4538 201 SIDDFRDA 208 (343)
Q Consensus 201 ~~~d~~~a 208 (343)
+.+|+...
T Consensus 376 ~~~~l~~~ 383 (387)
T 1ny5_A 376 DRGELSCL 383 (387)
T ss_dssp CHHHHHHH
T ss_pred cHHHCcHh
Confidence 77777543
No 116
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.98 E-value=4.6e-09 Score=96.53 Aligned_cols=166 Identities=20% Similarity=0.300 Sum_probs=105.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc--EEEEecccccccccchHHHHH---------------HHHHHHHHhcCCcEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT--FFCISASTLTSKWYGEGEKMV---------------RALFAVASVHQPSIIFI 63 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~--~~~v~~~~l~~~~~~~~~~~l---------------~~~~~~~~~~~p~vl~i 63 (343)
++++|++||||+.+|+++....+.. |+.++|..+.... .+..+ ...|..+ ..+.|||
T Consensus 155 vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~---~~~~lfg~~~g~~tga~~~~~g~~~~a---~~gtlfl 228 (368)
T 3dzd_A 155 VLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQEL---AESELFGHEKGAFTGALTRKKGKLELA---DQGTLFL 228 (368)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTT---HHHHHHEECSCSSSSCCCCEECHHHHT---TTSEEEE
T ss_pred heEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHH---HHHHhcCccccccCCcccccCChHhhc---CCCeEEe
Confidence 5899999999999999998876543 9999998764321 11111 1123333 3578999
Q ss_pred cccccccccCCCCchhHHHHHHHHHHHhhccCCCC-------CCCcEEEEEecCCCc-------hhhHHHHhccc-eEEE
Q psy4538 64 DEIDSLLCQRSDQENETSRRLKTEFLISLDGASTL-------DDDLVLVIGATNRPQ-------ELDEAARRRLV-KRLY 128 (343)
Q Consensus 64 Deid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~v~vi~~tn~~~-------~l~~~l~~rf~-~~i~ 128 (343)
||++.+. ...+..|+..++..... ....+.+|++||..- .+.+.+..|+. ..|.
T Consensus 229 dei~~l~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~ 297 (368)
T 3dzd_A 229 DEVGELD-----------QRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIY 297 (368)
T ss_dssp ETGGGSC-----------HHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEE
T ss_pred cChhhCC-----------HHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEe
Confidence 9999883 23445555555532111 012456788887521 22335555665 3456
Q ss_pred EcCCCH--HHHHHHHHHHHhhh----C---CCCChhhHHHHHHHCCCCCHHHHHHHHHHHhccc
Q psy4538 129 IPLPDE--QARCEIVTKLLRNI----T---NSLTVDDIEEVGRMTTDFSGADMASLCREASLGP 183 (343)
Q Consensus 129 ~~~P~~--~er~~il~~~l~~~----~---~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a 183 (343)
+|+... ++...++.+++.+. + ..++++.++.|..+....+.++++++++.++..+
T Consensus 298 lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 298 LPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp CCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTC
T ss_pred CCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 666544 55556666665432 2 3478888999988876678899999999987654
No 117
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.98 E-value=3.4e-08 Score=89.63 Aligned_cols=166 Identities=16% Similarity=0.117 Sum_probs=97.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccc------c---------ccc-------------------------c
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLT------S---------KWY-------------------------G 40 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~------~---------~~~-------------------------~ 40 (343)
++|+||+|+|||++++.+++..+ ++++++.... . ... .
T Consensus 34 v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (350)
T 2qen_A 34 TLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKL 111 (350)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGC
T ss_pred EEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccc
Confidence 47999999999999999999986 6666654321 0 000 0
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhH---
Q psy4538 41 EGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDE--- 117 (343)
Q Consensus 41 ~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~--- 117 (343)
.....+..+...+....|.+|+|||++.+...... ........+..+. +.. .++.+|.+++....+..
T Consensus 112 ~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~-~~~~~~~~L~~~~---~~~-----~~~~~il~g~~~~~l~~~l~ 182 (350)
T 2qen_A 112 SLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSR-GGKELLALFAYAY---DSL-----PNLKIILTGSEVGLLHDFLK 182 (350)
T ss_dssp CHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTT-TTHHHHHHHHHHH---HHC-----TTEEEEEEESSHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCcc-chhhHHHHHHHHH---Hhc-----CCeEEEEECCcHHHHHHHHh
Confidence 01111222222222224899999999988531100 0111122222222 221 23445545443221222
Q ss_pred ------HHHhccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHH
Q psy4538 118 ------AARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCRE 178 (343)
Q Consensus 118 ------~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~ 178 (343)
.+..|+...+.+++.+.++..+++...+...+...+++.+..+...+.|+ +.-+..++..
T Consensus 183 ~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~-P~~l~~~~~~ 248 (350)
T 2qen_A 183 ITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGI-PGWLVVFGVE 248 (350)
T ss_dssp TTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred hcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC-HHHHHHHHHH
Confidence 12235556899999999999999998877665667788888899989874 5566666543
No 118
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.96 E-value=6.8e-10 Score=80.07 Aligned_cols=78 Identities=21% Similarity=0.294 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhc
Q psy4538 133 DEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTV 212 (343)
Q Consensus 133 ~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 212 (343)
+.++|.+||+.++++.+.. ++.++..||+.|.||||+||.++|++|++.|+++ ....|+.+||..+++++
T Consensus 2 d~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~---------~~~~i~~~df~~Al~~v 71 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAGMFAIRA---------RRKVATEKDFLKAVDKV 71 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBC-SCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH---------SCSSBCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCC-CccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh---------ccccCCHHHHHHHHHHH
Confidence 5678999999999886543 4568999999999999999999999999999987 34679999999999999
Q ss_pred CCCccccc
Q psy4538 213 RPSVCQAD 220 (343)
Q Consensus 213 ~ps~~~k~ 220 (343)
.++...++
T Consensus 72 ~~~~~~~~ 79 (88)
T 3vlf_B 72 ISGYKKFS 79 (88)
T ss_dssp TC------
T ss_pred hcCccccc
Confidence 88765443
No 119
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.93 E-value=4.7e-08 Score=88.86 Aligned_cols=163 Identities=13% Similarity=0.043 Sum_probs=96.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccc-----c--cccch--------------------------------
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLT-----S--KWYGE-------------------------------- 41 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~-----~--~~~~~-------------------------------- 41 (343)
++|+||+|+|||++++.++++++..++++++.... + .....
T Consensus 33 v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 112 (357)
T 2fna_A 33 TLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEI 112 (357)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEE
Confidence 47999999999999999999987777888775430 0 00000
Q ss_pred -------HHHHHHHHHHHHHhc--CCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCC
Q psy4538 42 -------GEKMVRALFAVASVH--QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRP 112 (343)
Q Consensus 42 -------~~~~l~~~~~~~~~~--~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~ 112 (343)
....+..++...... .|.+|+|||++.+....+.. ....+..+... . .++.+|.+++..
T Consensus 113 ~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~----~~~~l~~~~~~---~-----~~~~~i~~g~~~ 180 (357)
T 2fna_A 113 KFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN----LLPALAYAYDN---L-----KRIKFIMSGSEM 180 (357)
T ss_dssp EEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCC----CHHHHHHHHHH---C-----TTEEEEEEESSH
T ss_pred EeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchh----HHHHHHHHHHc---C-----CCeEEEEEcCch
Confidence 001123333333221 38899999999886421111 11222222221 1 134555555443
Q ss_pred chhhHH---------HHhccceEEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHH
Q psy4538 113 QELDEA---------ARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCRE 178 (343)
Q Consensus 113 ~~l~~~---------l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~ 178 (343)
..+... +..|+...+.+++.+.++..+++...+...+...++ ...+...+.|+ +.-+..++..
T Consensus 181 ~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~--~~~i~~~t~G~-P~~l~~~~~~ 252 (357)
T 2fna_A 181 GLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD--YEVVYEKIGGI-PGWLTYFGFI 252 (357)
T ss_dssp HHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC--HHHHHHHHCSC-HHHHHHHHHH
T ss_pred HHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc--HHHHHHHhCCC-HHHHHHHHHH
Confidence 222221 223555689999999999999999877654444433 37788888874 5566666554
No 120
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.92 E-value=1.2e-09 Score=90.12 Aligned_cols=67 Identities=15% Similarity=0.250 Sum_probs=43.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----CCcEEEEecccccccccchHHHH-HHHHHHHHHhcCCcEEEecccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----KATFFCISASTLTSKWYGEGEKM-VRALFAVASVHQPSIIFIDEIDSL 69 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----~~~~~~v~~~~l~~~~~~~~~~~-l~~~~~~~~~~~p~vl~iDeid~l 69 (343)
++|+||+|||||++++++++.+ |..++.++..++........... ...++. ....|.+|+|||++..
T Consensus 41 ~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 41 LTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLK--TVLNSPVLVLDDLGSE 112 (180)
T ss_dssp EEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHH--HHHTCSEEEEETCSSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHH--HhcCCCEEEEeCCCCC
Confidence 4799999999999999999877 66666777666543321110000 001111 1236889999999853
No 121
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.91 E-value=1.6e-09 Score=90.59 Aligned_cols=127 Identities=20% Similarity=0.190 Sum_probs=77.3
Q ss_pred CEEeCCCCchHHHHHHHHHHH--------cC-CcEEEEeccccccccc----------chHHH--HHHHHHHHH--HhcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ--------CK-ATFFCISASTLTSKWY----------GEGEK--MVRALFAVA--SVHQ 57 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~--------l~-~~~~~v~~~~l~~~~~----------~~~~~--~l~~~~~~~--~~~~ 57 (343)
.|++|+||||||+.|...+.. .| .+++..++.++..... ..... ....++..+ ....
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPENI 87 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGGT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccccC
Confidence 378999999999998886443 34 6666677665532221 00000 011222221 2245
Q ss_pred CcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEcCCCHHH
Q psy4538 58 PSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQA 136 (343)
Q Consensus 58 p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~~P~~~e 136 (343)
++||+|||++.+++.+..... . . .++..+.... ...+-+|.+++.+..++..+++|+...++++.|....
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e-~-~----rll~~l~~~r---~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~~~ 157 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSK-I-P----ENVQWLNTHR---HQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKMGM 157 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCC-C-C----HHHHGGGGTT---TTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECSSCC
T ss_pred ceEEEEEChhhhccCccccch-h-H----HHHHHHHhcC---cCCeEEEEECCCHHHHhHHHHHHhheEEEEcCcccCc
Confidence 789999999999765432211 1 1 1344444322 2334566677779999999999999999988765443
No 122
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.84 E-value=5e-09 Score=111.35 Aligned_cols=108 Identities=22% Similarity=0.291 Sum_probs=82.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccccc------------ccccch----HHHHHHHHHHHHHhcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLT------------SKWYGE----GEKMVRALFAVASVHQPSII 61 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~------------~~~~~~----~~~~l~~~~~~~~~~~p~vl 61 (343)
+|+|||||||||++|++++.+. |-+.+.++..... ++|.++ +++.++.++..++...|+++
T Consensus 1085 ~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i 1164 (1706)
T 3cmw_A 1085 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 1164 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEE
T ss_pred EEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEE
Confidence 4899999999999999998866 5566667665533 555666 88999999998988999999
Q ss_pred EecccccccccCC------CCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCC
Q psy4538 62 FIDEIDSLLCQRS------DQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNR 111 (343)
Q Consensus 62 ~iDeid~l~~~~~------~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~ 111 (343)
++|+++.+++.+. +.......|.+++++..+++... ..+|++| +||+
T Consensus 1165 ~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~--~~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1165 VVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK--QSNTLLI-FINQ 1217 (1706)
T ss_dssp EESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH--HTTCEEE-EEEC
T ss_pred EeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhc--cCCeEEE-Eecc
Confidence 9999999998732 11225667788899998887544 3456666 4544
No 123
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.83 E-value=2.1e-10 Score=106.91 Aligned_cols=68 Identities=13% Similarity=0.065 Sum_probs=7.1
Q ss_pred EeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEee-cCCcccccHHHHH--hhhceEeccCCCCC
Q psy4538 228 IFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGA-TNRPQELDEAARR--RLVKRLYIPLPDEQ 302 (343)
Q Consensus 228 lf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~a-TN~~~~lD~allR--R~d~~i~~~~P~~~ 302 (343)
+++||+|++. +...++..+|++++||++|||+.+..+ | +++ ||+|+.||+||+| |||+.|++++|+..
T Consensus 111 ~~~De~d~~~---~~~~~~~e~rvl~~LL~~~dg~~~~~~--v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~ 181 (444)
T 1g41_A 111 VRQQEIAKNR---ARAEDVAEERILDALLPPAKNQWGEVE--N--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGV 181 (444)
T ss_dssp HHHHHHHSCC--------------------------------------------------------------------
T ss_pred chhhhhhhhh---ccchhhHHHHHHHHHHHHhhccccccc--c--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCc
Confidence 3588988764 344556789999999999999987433 3 455 9999999999999 99999999999986
No 124
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.76 E-value=3e-09 Score=94.58 Aligned_cols=70 Identities=14% Similarity=0.237 Sum_probs=45.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc--EEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEeccccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT--FFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQ 72 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~--~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~ 72 (343)
++|+||||+|||+++.++|.+.|.+ |+.+...+..+.+....+..+..+.+..... + +|+||+++.+...
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~-~-LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQH-R-VIVIDSLKNVIGA 197 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHC-S-EEEEECCTTTC--
T ss_pred EEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhC-C-EEEEecccccccc
Confidence 4799999999999999999875544 5544223332323334455555555555433 3 9999999998654
No 125
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.73 E-value=2.3e-08 Score=92.94 Aligned_cols=188 Identities=14% Similarity=0.064 Sum_probs=105.9
Q ss_pred CEEeCCCCchHHHHHHHH-HHHcCCcEEEEecc-----cccccccchHHHH-HHHHHHHHHhcCCcEEEecccccccccC
Q psy4538 1 ILLFGPPGTGKTLIGKCV-AAQCKATFFCISAS-----TLTSKWYGEGEKM-VRALFAVASVHQPSIIFIDEIDSLLCQR 73 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~l-a~~l~~~~~~v~~~-----~l~~~~~~~~~~~-l~~~~~~~~~~~p~vl~iDeid~l~~~~ 73 (343)
|||.|+||+ ||++++++ ++.+....+ .... .+.....+.+... -...+.. ....++++||++.+-
T Consensus 242 VLL~G~PGt-KS~Lar~i~~~i~pR~~f-t~g~~ss~~gLt~s~r~~tG~~~~~G~l~L---AdgGvl~lDEIn~~~--- 313 (506)
T 3f8t_A 242 VLLAGYPVV-CSEILHHVLDHLAPRGVY-VDLRRTELTDLTAVLKEDRGWALRAGAAVL---ADGGILAVDHLEGAP--- 313 (506)
T ss_dssp EEEESCHHH-HHHHHHHHHHHTCSSEEE-EEGGGCCHHHHSEEEEESSSEEEEECHHHH---TTTSEEEEECCTTCC---
T ss_pred EEEECCCCh-HHHHHHHHHHHhCCCeEE-ecCCCCCccCceEEEEcCCCcccCCCeeEE---cCCCeeehHhhhhCC---
Confidence 589999999 99999999 665544332 2210 0110000000000 0001111 235799999999873
Q ss_pred CCCchhHHHHHHHHHHHhhccCCC-----CCCCcEEEEEecCCCc-----------hhhHHHHhccceEE-EEcCCCHHH
Q psy4538 74 SDQENETSRRLKTEFLISLDGAST-----LDDDLVLVIGATNRPQ-----------ELDEAARRRLVKRL-YIPLPDEQA 136 (343)
Q Consensus 74 ~~~~~~~~~~~~~~ll~~l~~~~~-----~~~~~v~vi~~tn~~~-----------~l~~~l~~rf~~~i-~~~~P~~~e 136 (343)
...+..++..|+.-.. .-+.++.+|+++|+.. .+++++++||+..+ .++.|+.++
T Consensus 314 --------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 314 --------EPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGE 385 (506)
T ss_dssp --------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC------
T ss_pred --------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhH
Confidence 2334445555542210 1234678999999875 78899999998543 345554332
Q ss_pred -------------HHHHHHHHHh--hhCCCCChhhHHHHHH-----------------HCCCCCHHHHHHHHHHHhcccc
Q psy4538 137 -------------RCEIVTKLLR--NITNSLTVDDIEEVGR-----------------MTTDFSGADMASLCREASLGPV 184 (343)
Q Consensus 137 -------------r~~il~~~l~--~~~~~~~~~~~~~la~-----------------~t~g~s~~dl~~l~~~a~~~a~ 184 (343)
.++++. +++ .....++++..+.+.+ ...|.|++.+..+++.|...|.
T Consensus 386 d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~ 464 (506)
T 3f8t_A 386 PEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHAR 464 (506)
T ss_dssp --------CCHHHHHHHHH-HHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred hhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHH
Confidence 222222 223 2234556654433332 1347899999999988866555
Q ss_pred cccccccccccCCcccChhHHHHHHHhcCC
Q psy4538 185 RSIDLSRIDALDVRPISIDDFRDALKTVRP 214 (343)
Q Consensus 185 ~~~~~~~~~~~~~~~i~~~d~~~a~~~~~p 214 (343)
-+ ....++.+|+..++.-+.-
T Consensus 465 L~---------gR~~V~~eDV~~Ai~L~~~ 485 (506)
T 3f8t_A 465 MR---------LSDDVEPEDVDIAAELVDW 485 (506)
T ss_dssp HT---------TCSEECHHHHHHHHHHHHH
T ss_pred Hc---------CcCCCCHHHHHHHHHHHHH
Confidence 44 3456899999998876643
No 126
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.71 E-value=3.2e-07 Score=83.38 Aligned_cols=179 Identities=12% Similarity=0.042 Sum_probs=116.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CC-cEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEeccccc-ccccCCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KA-TFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDS-LLCQRSD 75 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~-~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~-l~~~~~~ 75 (343)
.|||||+|.||++.++.+++.+ +. +...+... +. ......+..+..........|++|||+|. +..
T Consensus 21 yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~--~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~---- 91 (343)
T 1jr3_D 21 YLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---PN--TDWNAIFSLCQAMSLFASRQTLLLLLPENGPNA---- 91 (343)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---TT--CCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCT----
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---CC--CCHHHHHHHhcCcCCccCCeEEEEECCCCCCCh----
Confidence 3799999999999999998865 22 22222111 10 12222222222222234577999999997 521
Q ss_pred CchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCC-----CchhhHHHHhccceEEEEcCCCHHHHHHHHHHHHhhhCC
Q psy4538 76 QENETSRRLKTEFLISLDGASTLDDDLVLVIGATNR-----PQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNITN 150 (343)
Q Consensus 76 ~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~-----~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~~l~~~~~ 150 (343)
...+.++..++... ...++|+.+++. ...+.+.+.+|+. .+.+.+++..+....++..++..+.
T Consensus 92 -------~~~~aLl~~le~p~---~~~~~il~~~~~~~~~~~~k~~~~i~sr~~-~~~~~~l~~~~l~~~l~~~~~~~g~ 160 (343)
T 1jr3_D 92 -------AINEQLLTLTGLLH---DDLLLIVRGNKLSKAQENAAWFTALANRSV-QVTCQTPEQAQLPRWVAARAKQLNL 160 (343)
T ss_dssp -------THHHHHHHHHTTCB---TTEEEEEEESCCCTTTTTSHHHHHHTTTCE-EEEECCCCTTHHHHHHHHHHHHTTC
T ss_pred -------HHHHHHHHHHhcCC---CCeEEEEEcCCCChhhHhhHHHHHHHhCce-EEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 22345666666532 334455555432 3467888888885 8999999999999999999998888
Q ss_pred CCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhc
Q psy4538 151 SLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTV 212 (343)
Q Consensus 151 ~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 212 (343)
.++++.+..+++.+.| +.+.+.+.+...+..+- ...|+.+++...+...
T Consensus 161 ~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~~------------~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 161 ELDDAANQVLCYCYEG-NLLALAQALERLSLLWP------------DGKLTLPRVEQAVNDA 209 (343)
T ss_dssp EECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHCT------------TCEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhcC------------CCCCCHHHHHHHHhhh
Confidence 8999999999998775 66666666666543321 1358888887776654
No 127
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.69 E-value=5.1e-08 Score=107.99 Aligned_cols=130 Identities=17% Similarity=0.156 Sum_probs=87.1
Q ss_pred EEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhHH
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENETS 81 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~~ 81 (343)
++.||+|||||++++++|+.+|.+++.++|++-... ..+..+|..+. ..++++++||++.+-..- ....
T Consensus 649 ~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~------~~lg~~~~g~~-~~Gaw~~~DE~nr~~~ev----Ls~l 717 (2695)
T 4akg_A 649 CFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY------QVLSRLLVGIT-QIGAWGCFDEFNRLDEKV----LSAV 717 (2695)
T ss_dssp EEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH------HHHHHHHHHHH-HHTCEEEEETTTSSCHHH----HHHH
T ss_pred cccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh------hHhhHHHHHHH-hcCCEeeehhhhhcChHH----HHHH
Confidence 689999999999999999999999999999875432 33455666555 346899999999873210 0011
Q ss_pred HHHHHHHHHhhccCC---------CCCCCcEEEEEecCC----CchhhHHHHhccceEEEEcCCCHHHHHHHHHH
Q psy4538 82 RRLKTEFLISLDGAS---------TLDDDLVLVIGATNR----PQELDEAARRRLVKRLYIPLPDEQARCEIVTK 143 (343)
Q Consensus 82 ~~~~~~ll~~l~~~~---------~~~~~~v~vi~~tn~----~~~l~~~l~~rf~~~i~~~~P~~~er~~il~~ 143 (343)
...+..+...+.... ........+++|.|+ ...+++++++||. .+.+..|+.+...+++..
T Consensus 718 ~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr-~v~m~~Pd~~~i~ei~l~ 791 (2695)
T 4akg_A 718 SANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFR-EFSMKSPQSGTIAEMILQ 791 (2695)
T ss_dssp HHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEE-EEECCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhheE-EEEeeCCCHHHHHHHHHH
Confidence 111111222221111 011334567777773 4579999999996 799999999988887543
No 128
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.64 E-value=2.4e-08 Score=83.66 Aligned_cols=67 Identities=13% Similarity=0.258 Sum_probs=44.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccccchH-HHHHHHHHHHHHhcCCcEEEecccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWYGEG-EKMVRALFAVASVHQPSIIFIDEIDSL 69 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~~~~-~~~l~~~~~~~~~~~p~vl~iDeid~l 69 (343)
++|+||+|||||++++++++++ +.+++.+++.++........ .......+.... .+.+|+|||++..
T Consensus 57 ~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~ 127 (202)
T 2w58_A 57 LYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAE 127 (202)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 5899999999999999999987 67788888876543221100 000112222222 3569999999765
No 129
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.63 E-value=4.4e-07 Score=97.77 Aligned_cols=72 Identities=25% Similarity=0.343 Sum_probs=49.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccccccccc----------------chHHHHHHHHHHHHHhcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKWY----------------GEGEKMVRALFAVASVHQPSII 61 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~~----------------~~~~~~l~~~~~~~~~~~p~vl 61 (343)
++++||||||||+++.+++.+. |.+.++++..+...... ...+...+......+...|++|
T Consensus 1084 vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~~~~~dlv 1163 (2050)
T 3cmu_A 1084 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 1163 (2050)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHHhCCCCEE
Confidence 5899999999999999997654 77888888776533211 1122333333334445679999
Q ss_pred Eeccccccccc
Q psy4538 62 FIDEIDSLLCQ 72 (343)
Q Consensus 62 ~iDeid~l~~~ 72 (343)
+||++..+.+.
T Consensus 1164 VIDsl~~L~~~ 1174 (2050)
T 3cmu_A 1164 VVDSVAALTPK 1174 (2050)
T ss_dssp EESCGGGCCCH
T ss_pred EECCccccccc
Confidence 99999998553
No 130
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.58 E-value=8.1e-08 Score=79.66 Aligned_cols=27 Identities=22% Similarity=0.486 Sum_probs=23.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~ 27 (343)
++||||||||||++|.++|+.++..++
T Consensus 61 ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 61 LVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp EEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 589999999999999999999865443
No 131
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.57 E-value=9.7e-07 Score=98.70 Aligned_cols=139 Identities=19% Similarity=0.256 Sum_probs=87.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-CCcEEEEecccccccccchHHHHHHHHHHHH----Hh------------cCCcEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-KATFFCISASTLTSKWYGEGEKMVRALFAVA----SV------------HQPSIIFI 63 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~----~~------------~~p~vl~i 63 (343)
|||+||||||||++++.....+ +.+++.++++.-.+ ...+...+... .. .+..|+||
T Consensus 1307 vLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFi 1380 (3245)
T 3vkg_A 1307 LILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFC 1380 (3245)
T ss_dssp CEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEe
Confidence 6999999999998876655544 55677777765432 22333333321 00 12258999
Q ss_pred cccccccccCCCCchhHHHHHHHHHHHhhccCCCC-----CCCcEEEEEecCCC-----chhhHHHHhccceEEEEcCCC
Q psy4538 64 DEIDSLLCQRSDQENETSRRLKTEFLISLDGASTL-----DDDLVLVIGATNRP-----QELDEAARRRLVKRLYIPLPD 133 (343)
Q Consensus 64 Deid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----~~~~v~vi~~tn~~-----~~l~~~l~~rf~~~i~~~~P~ 133 (343)
||++.-.... -.....-.++.+++..-...... .-..+.+|+++|++ ..+++.+.|||. .+.++.|+
T Consensus 1381 DDiNmp~~D~--yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~-vi~i~~ps 1457 (3245)
T 3vkg_A 1381 DEINLPSTDK--YGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAP-ILLVDFPS 1457 (3245)
T ss_dssp TTTTCCCCCT--TSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCC-EEECCCCC
T ss_pred cccCCCCccc--cccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhce-EEEeCCCC
Confidence 9998532211 11123344455555432111110 12357789999987 368999999998 69999999
Q ss_pred HHHHHHHHHHHHhhh
Q psy4538 134 EQARCEIVTKLLRNI 148 (343)
Q Consensus 134 ~~er~~il~~~l~~~ 148 (343)
.++...|+..++...
T Consensus 1458 ~esL~~If~til~~~ 1472 (3245)
T 3vkg_A 1458 TSSLTQIYGTFNRAL 1472 (3245)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988776543
No 132
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.54 E-value=1.1e-08 Score=72.70 Aligned_cols=74 Identities=22% Similarity=0.229 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHHHHHHHhcC-
Q psy4538 135 QARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVR- 213 (343)
Q Consensus 135 ~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~- 213 (343)
++|.+||+.++++.... ++.++..+++.|.||||+||.++|++|++.++++ ....|+.+||..++.++.
T Consensus 1 ~~R~~Il~~~l~~~~~~-~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~---------~~~~i~~~df~~Al~~v~~ 70 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK---------NRYVILQSDLEEAYATQVK 70 (82)
T ss_dssp -------------CEEC-TTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHT---------TCSEECHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHcCCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---------ccCCcCHHHHHHHHHHHHc
Confidence 46889999998876432 3457889999999999999999999999999887 346799999999999984
Q ss_pred CCccc
Q psy4538 214 PSVCQ 218 (343)
Q Consensus 214 ps~~~ 218 (343)
|+.+.
T Consensus 71 ~~~~~ 75 (82)
T 2dzn_B 71 TDNTV 75 (82)
T ss_dssp -----
T ss_pred CcCCh
Confidence 54443
No 133
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.52 E-value=4.1e-07 Score=85.99 Aligned_cols=130 Identities=15% Similarity=0.176 Sum_probs=100.6
Q ss_pred CcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEe---------cC---CCchhhHHHHhccce
Q psy4538 58 PSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGA---------TN---RPQELDEAARRRLVK 125 (343)
Q Consensus 58 p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~---------tn---~~~~l~~~l~~rf~~ 125 (343)
|.|++|||+|.+- ....+.|+..++... .+++++++ ++ .+..+++.+++||..
T Consensus 296 ~~VliIDEa~~l~-----------~~a~~aLlk~lEe~~----~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~ 360 (456)
T 2c9o_A 296 PGVLFVDEVHMLD-----------IECFTYLHRALESSI----APIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI 360 (456)
T ss_dssp ECEEEEESGGGCB-----------HHHHHHHHHHTTSTT----CCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEE
T ss_pred ceEEEEechhhcC-----------HHHHHHHHHHhhccC----CCEEEEecCCccccccccccccccccCChhHHhhcce
Confidence 4699999999883 345667777777542 33555555 32 267899999999985
Q ss_pred EEEEcCCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCcccChhHH
Q psy4538 126 RLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDF 205 (343)
Q Consensus 126 ~i~~~~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~i~~~d~ 205 (343)
+.+++|+.++..++++..+...+..++++.+..++..+...+++....+++.|...|..+ +...|+.+|+
T Consensus 361 -~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~---------~~~~v~~~~v 430 (456)
T 2c9o_A 361 -IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKIN---------GKDSIEKEHV 430 (456)
T ss_dssp -EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHT---------TCSSBCHHHH
T ss_pred -eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhc---------CCCccCHHHH
Confidence 699999999999999999887777889989999999882248888888888886666543 3467999999
Q ss_pred HHHHHhc
Q psy4538 206 RDALKTV 212 (343)
Q Consensus 206 ~~a~~~~ 212 (343)
..++..+
T Consensus 431 ~~~~~~~ 437 (456)
T 2c9o_A 431 EEISELF 437 (456)
T ss_dssp HHHHHHS
T ss_pred HHHHHHh
Confidence 9988754
No 134
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.49 E-value=1.8e-06 Score=70.70 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=22.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~ 27 (343)
+.|.||+|+||||+++.++..++..+.
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 468999999999999999998865443
No 135
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.43 E-value=7.2e-08 Score=84.72 Aligned_cols=77 Identities=23% Similarity=0.282 Sum_probs=59.1
Q ss_pred cCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHH-HHHhhhceEeccCCCC
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEA-ARRRLVKRLYIPLPDE 301 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~a-llRR~d~~i~~~~P~~ 301 (343)
..++||||||+|.+++++..+ ....+.+++.|+..|++... .+..|++|+|||.|+.||++ +.+||+..+++|.++.
T Consensus 123 ~~~~vl~iDEid~l~~~~~~~-~~~~~~~l~~L~~~~~~~~~-~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~ 200 (272)
T 1d2n_A 123 SQLSCVVVDDIERLLDYVPIG-PRFSNLVLQALLVLLKKAPP-QGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIAT 200 (272)
T ss_dssp SSEEEEEECCHHHHTTCBTTT-TBCCHHHHHHHHHHTTCCCS-TTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEE
T ss_pred cCCcEEEEEChhhhhccCCCC-hhHHHHHHHHHHHHhcCccC-CCCCEEEEEecCChhhcchhhhhcccceEEcCCCccH
Confidence 458999999999999887532 23456778888888888653 24458999999999999994 4459999988865544
No 136
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.42 E-value=3.4e-08 Score=88.32 Aligned_cols=74 Identities=18% Similarity=0.272 Sum_probs=58.2
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcc-----cccHHHHHhhhceEeccC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ-----ELDEAARRRLVKRLYIPL 298 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~-----~lD~allRR~d~~i~~~~ 298 (343)
.++||||||+|.+++++++ +.....+++.|+..|+.... + +++|++||.++ .+||++.+||+.+|+|+.
T Consensus 130 ~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~~~~--~--~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~ 203 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENNRD--D--LVVILAGYADRMENFFQSNPGFRSRIAHHIEFPD 203 (309)
T ss_dssp TTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHCTT--T--CEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECC
T ss_pred CCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhcCCC--C--EEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCC
Confidence 3689999999999977654 33456788999999986432 3 78999998875 368999999999999999
Q ss_pred CCCCC
Q psy4538 299 PDEQK 303 (343)
Q Consensus 299 P~~~~ 303 (343)
|+.++
T Consensus 204 ~~~~~ 208 (309)
T 3syl_A 204 YSDEE 208 (309)
T ss_dssp CCHHH
T ss_pred cCHHH
Confidence 98753
No 137
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.41 E-value=1.1e-07 Score=85.01 Aligned_cols=67 Identities=13% Similarity=0.254 Sum_probs=42.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----CCcEEEEecccccccccch-HHHHHHHHHHHHHhcCCcEEEecccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----KATFFCISASTLTSKWYGE-GEKMVRALFAVASVHQPSIIFIDEIDSL 69 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----~~~~~~v~~~~l~~~~~~~-~~~~l~~~~~~~~~~~p~vl~iDeid~l 69 (343)
++|+||||||||++++++|+++ |.+++.+++.++....... ........+... ..+.+|+|||++..
T Consensus 155 lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 155 LYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAV--KNVPVLILDDIGAE 226 (308)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHH--HTSSEEEEETCCC-
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 5899999999999999999865 4778888877654322110 001111112222 24669999999754
No 138
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.37 E-value=2.1e-07 Score=84.34 Aligned_cols=70 Identities=23% Similarity=0.339 Sum_probs=53.7
Q ss_pred cCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCC--------------CCCCcEEEEeecCCcccccHHHHH
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAST--------------LDDDLVLVIGATNRPQELDEAARR 288 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~--------------~~~~~v~vi~aTN~~~~lD~allR 288 (343)
+.+++||+||||.+.. .+.+.|+..|+...- .....|++|+|||+++.++++|++
T Consensus 105 ~~~~vl~lDEi~~l~~-----------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~ 173 (338)
T 3pfi_A 105 SEGDILFIDEIHRLSP-----------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD 173 (338)
T ss_dssp CTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT
T ss_pred cCCCEEEEechhhcCH-----------HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh
Confidence 4689999999998852 245666666665321 000137999999999999999999
Q ss_pred hhhceEeccCCCCCC
Q psy4538 289 RLVKRLYIPLPDEQK 303 (343)
Q Consensus 289 R~d~~i~~~~P~~~~ 303 (343)
||+..++++.|+.++
T Consensus 174 R~~~~i~l~~~~~~e 188 (338)
T 3pfi_A 174 RFGMQFRLEFYKDSE 188 (338)
T ss_dssp TCSEEEECCCCCHHH
T ss_pred hcCEEeeCCCcCHHH
Confidence 999999999998754
No 139
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.35 E-value=1.8e-06 Score=96.65 Aligned_cols=133 Identities=15% Similarity=0.156 Sum_probs=85.3
Q ss_pred EEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccccCCCCchhHH
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENETS 81 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~~~~~~~~~~~ 81 (343)
.+.||+|||||.+++.+|+.+|.+++.++|++-... ..+..+|.-+. ..++..++||++.+-...-.-.....
T Consensus 608 ~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~-~~GaW~cfDEfNrl~~~vLSvv~~qi 680 (3245)
T 3vkg_A 608 NPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLC-QCGAWGCFDEFNRLEERILSAVSQQI 680 (3245)
T ss_dssp EEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHH-HHTCEEEEETTTSSCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHh-hcCcEEEehhhhcCCHHHHHHHHHHH
Confidence 478999999999999999999999999999875432 23455565554 34789999999987311000000000
Q ss_pred HHHHHHHHHh-----hc-cCCCCCCCcEEEEEecCC----CchhhHHHHhccceEEEEcCCCHHHHHHHHH
Q psy4538 82 RRLKTEFLIS-----LD-GASTLDDDLVLVIGATNR----PQELDEAARRRLVKRLYIPLPDEQARCEIVT 142 (343)
Q Consensus 82 ~~~~~~ll~~-----l~-~~~~~~~~~v~vi~~tn~----~~~l~~~l~~rf~~~i~~~~P~~~er~~il~ 142 (343)
..+...+... +. +....-.....++.|.|+ ...+++.+++||. .+.+..|+.+...+++.
T Consensus 681 ~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr-~v~m~~Pd~~~i~ei~L 750 (3245)
T 3vkg_A 681 QTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFR-SMAMIKPDREMIAQVML 750 (3245)
T ss_dssp HHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEE-EEECCSCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcE-EEEEeCCCHHHHHHHHH
Confidence 0111111111 00 111111234567778874 4589999999997 69999999998888764
No 140
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.28 E-value=1.9e-06 Score=93.04 Aligned_cols=106 Identities=22% Similarity=0.255 Sum_probs=67.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccccccc----------------ccchHHHHHHHHHHHHHhcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSK----------------WYGEGEKMVRALFAVASVHQPSII 61 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~----------------~~~~~~~~l~~~~~~~~~~~p~vl 61 (343)
++|+||||||||+||.+++.+. |.....++....... .+...++.++.++..++...|++|
T Consensus 1430 vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~lV 1509 (2050)
T 3cmu_A 1430 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 1509 (2050)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCCEE
Confidence 5899999999999999997765 556677776543211 122345666777777777889999
Q ss_pred EecccccccccCC------CCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEe
Q psy4538 62 FIDEIDSLLCQRS------DQENETSRRLKTEFLISLDGASTLDDDLVLVIGA 108 (343)
Q Consensus 62 ~iDeid~l~~~~~------~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~ 108 (343)
+||+++.+.+... +.......++..+++..+.+... ...+++|.+
T Consensus 1510 VIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~--~~~v~VI~t 1560 (2050)
T 3cmu_A 1510 VVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK--QSNTLLIFI 1560 (2050)
T ss_dssp EESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH--TTTCEEEEE
T ss_pred EEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHH--hCCcEEEEE
Confidence 9999998876421 11111234566666666655443 233444433
No 141
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.27 E-value=1.6e-07 Score=90.64 Aligned_cols=70 Identities=23% Similarity=0.266 Sum_probs=49.7
Q ss_pred ceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCC-----------CCCcEEEEeecCCcccccHHHHHhhhceE
Q psy4538 226 SIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTL-----------DDDLVLVIGATNRPQELDEAARRRLVKRL 294 (343)
Q Consensus 226 ~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~-----------~~~~v~vi~aTN~~~~lD~allRR~d~~i 294 (343)
.|+||||+|.+.+.+.++ ..+.||..||..... +-..|++|+|||+++.|||+|+|||+ +|
T Consensus 177 ~vl~lDEid~l~~~~~~~-------~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~-vi 248 (543)
T 3m6a_A 177 PVFLLDEIDKMSSDFRGD-------PSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRME-II 248 (543)
T ss_dssp EEEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEE-EE
T ss_pred CEEEEhhhhhhhhhhccC-------HHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcc-ee
Confidence 399999999998775321 467788888764321 01348999999999999999999996 78
Q ss_pred eccCCCCCC
Q psy4538 295 YIPLPDEQK 303 (343)
Q Consensus 295 ~~~~P~~~~ 303 (343)
+|+.|+.++
T Consensus 249 ~~~~~~~~e 257 (543)
T 3m6a_A 249 NIAGYTEIE 257 (543)
T ss_dssp ECCCCCHHH
T ss_pred eeCCCCHHH
Confidence 999998754
No 142
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.26 E-value=1.4e-06 Score=77.65 Aligned_cols=79 Identities=24% Similarity=0.395 Sum_probs=60.1
Q ss_pred CcceEeecchhhhhcccCCCcch-hHHHHHHHHHHhhcCCCCC------CCCcEEEEee----cCCcccccHHHHHhhhc
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENE-TSRRLKTEFLISLDGASTL------DDDLVLVIGA----TNRPQELDEAARRRLVK 292 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~-~~~r~v~~lL~~mdg~~~~------~~~~v~vi~a----TN~~~~lD~allRR~d~ 292 (343)
.++||||||+|.+.+.+.+.... ....+.+.|+..|++..-. ....+++|++ +|.|+.++|++++||+.
T Consensus 116 ~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~ 195 (310)
T 1ofh_A 116 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPI 195 (310)
T ss_dssp HHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCE
T ss_pred CCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCc
Confidence 47899999999999887543333 3345678899999875210 1123788888 67899999999999999
Q ss_pred eEeccCCCCC
Q psy4538 293 RLYIPLPDEQ 302 (343)
Q Consensus 293 ~i~~~~P~~~ 302 (343)
.|+|+.|+.+
T Consensus 196 ~i~~~~~~~~ 205 (310)
T 1ofh_A 196 RVELTALSAA 205 (310)
T ss_dssp EEECCCCCHH
T ss_pred eEEcCCcCHH
Confidence 9999999875
No 143
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.17 E-value=8.2e-06 Score=70.68 Aligned_cols=24 Identities=46% Similarity=0.660 Sum_probs=21.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA 24 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~ 24 (343)
++||||||||||++++++|+.++.
T Consensus 107 ~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 107 IWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHhhhcc
Confidence 589999999999999999998755
No 144
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.15 E-value=9.7e-07 Score=72.19 Aligned_cols=68 Identities=25% Similarity=0.340 Sum_probs=49.4
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcc-----cccHHHHHhhhceEeccC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ-----ELDEAARRRLVKRLYIPL 298 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~-----~lD~allRR~d~~i~~~~ 298 (343)
.|++|||||+|.+.+.+..... ...+.+.|+..++. ..+.+|++||.++ .+|+++.|||+. ++++.
T Consensus 115 ~~~vl~iDe~~~l~~~~~~~~~--~~~~~~~l~~~~~~------~~~~ii~~~~~~~~~~~~~~~~~l~~R~~~-i~i~~ 185 (187)
T 2p65_A 115 GQVVMFIDEIHTVVGAGAVAEG--ALDAGNILKPMLAR------GELRCIGATTVSEYRQFIEKDKALERRFQQ-ILVEQ 185 (187)
T ss_dssp TSEEEEETTGGGGSSSSSSCTT--SCCTHHHHHHHHHT------TCSCEEEEECHHHHHHHTTTCHHHHHHEEE-EECCS
T ss_pred CceEEEEeCHHHhccccccccc--chHHHHHHHHHHhc------CCeeEEEecCHHHHHHHHhccHHHHHhcCc-ccCCC
Confidence 5889999999999977652221 12234444444443 2278999999987 589999999995 99998
Q ss_pred CC
Q psy4538 299 PD 300 (343)
Q Consensus 299 P~ 300 (343)
|+
T Consensus 186 p~ 187 (187)
T 2p65_A 186 PS 187 (187)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 145
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.10 E-value=6.3e-07 Score=73.57 Aligned_cols=70 Identities=21% Similarity=0.360 Sum_probs=46.7
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcc-----cccHHHHHhhhceEeccC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ-----ELDEAARRRLVKRLYIPL 298 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~-----~lD~allRR~d~~i~~~~ 298 (343)
.|+||||||+|.+.+.++..........+.++ ++. ..+.+|++||.++ .+|+++.+||+ .++++.
T Consensus 115 ~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~---~~~------~~~~~i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~ 184 (195)
T 1jbk_A 115 GNVILFIDELHTMVGAGKADGAMDAGNMLKPA---LAR------GELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAE 184 (195)
T ss_dssp TTEEEEEETGGGGTT------CCCCHHHHHHH---HHT------TSCCEEEEECHHHHHHHTTTCHHHHTTEE-EEECCC
T ss_pred CCeEEEEeCHHHHhccCcccchHHHHHHHHHh---hcc------CCeEEEEeCCHHHHHHHHhcCHHHHHHhc-eeecCC
Confidence 57899999999998776432222222233333 322 1278899999998 78999999999 689999
Q ss_pred CCCCC
Q psy4538 299 PDEQK 303 (343)
Q Consensus 299 P~~~~ 303 (343)
|+.++
T Consensus 185 p~~~~ 189 (195)
T 1jbk_A 185 PSVED 189 (195)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 98654
No 146
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.09 E-value=1.1e-06 Score=80.63 Aligned_cols=40 Identities=20% Similarity=0.457 Sum_probs=31.4
Q ss_pred cCcceEeecchhhhhcccCCCc---chhHHHHHHHHHHhhcCC
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQE---NETSRRLKTEFLISLDGA 262 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~---~~~~~r~v~~lL~~mdg~ 262 (343)
+.||||||||+|++.+.|++.+ +....++.+.||..|||.
T Consensus 115 ~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~ 157 (363)
T 3hws_A 115 AQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT 157 (363)
T ss_dssp HHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC
T ss_pred cCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCc
Confidence 3589999999999998876543 334456999999999964
No 147
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.98 E-value=3.2e-05 Score=70.15 Aligned_cols=71 Identities=18% Similarity=0.252 Sum_probs=46.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccccccc----------------ccchHHHHHHHHHHHHHhcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSK----------------WYGEGEKMVRALFAVASVHQPSII 61 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~----------------~~~~~~~~l~~~~~~~~~~~p~vl 61 (343)
++|+||||+|||+++..++..+ +..+++++....... .....+..+..+........+.++
T Consensus 64 ~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dlv 143 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDLI 143 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCeE
Confidence 4789999999999999998875 566777776543210 011122333332223334678999
Q ss_pred Eecccccccc
Q psy4538 62 FIDEIDSLLC 71 (343)
Q Consensus 62 ~iDeid~l~~ 71 (343)
+||.+..+.+
T Consensus 144 VIDSi~~l~~ 153 (356)
T 3hr8_A 144 VVDSVAALVP 153 (356)
T ss_dssp EEECTTTCCC
T ss_pred EehHhhhhcC
Confidence 9999998875
No 148
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.86 E-value=7.4e-06 Score=66.70 Aligned_cols=34 Identities=24% Similarity=0.478 Sum_probs=29.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTL 34 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l 34 (343)
|+|+|+||+||||+++.+++.++.+++.++...+
T Consensus 6 i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 4789999999999999999999988887665443
No 149
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.83 E-value=7.9e-05 Score=67.98 Aligned_cols=71 Identities=20% Similarity=0.290 Sum_probs=46.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccc----------------cchHHHHHHHHHHHHHhcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKW----------------YGEGEKMVRALFAVASVHQPSII 61 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~----------------~~~~~~~l~~~~~~~~~~~p~vl 61 (343)
++|+||||+|||+++..++..+ +.++++++........ ....+..+..+....+...+.+|
T Consensus 77 i~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~lV 156 (366)
T 1xp8_A 77 TEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVV 156 (366)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCEE
Confidence 4789999999999999988764 5677777765422111 01122222222223334568999
Q ss_pred Eecccccccc
Q psy4538 62 FIDEIDSLLC 71 (343)
Q Consensus 62 ~iDeid~l~~ 71 (343)
+||.+..+.+
T Consensus 157 VIDsl~~l~~ 166 (366)
T 1xp8_A 157 VVDSVAALTP 166 (366)
T ss_dssp EEECTTTCCC
T ss_pred EEeChHHhcc
Confidence 9999999875
No 150
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.82 E-value=3.8e-05 Score=65.65 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=44.3
Q ss_pred CEEeCCCCchHHHHHHHHHHH--c-------CCcEEEEeccccccc--------ccc----------------hHHH---
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ--C-------KATFFCISASTLTSK--------WYG----------------EGEK--- 44 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~--l-------~~~~~~v~~~~l~~~--------~~~----------------~~~~--- 44 (343)
++|+||||+|||++++.++.. + +...++++....... ..+ ....
T Consensus 27 ~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 106 (243)
T 1n0w_A 27 TEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQ 106 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHHHHHH
Confidence 468999999999999999984 3 445677766541000 000 0111
Q ss_pred HHHHHHHHHHhcCCcEEEeccccccccc
Q psy4538 45 MVRALFAVASVHQPSIIFIDEIDSLLCQ 72 (343)
Q Consensus 45 ~l~~~~~~~~~~~p~vl~iDeid~l~~~ 72 (343)
.+..+........|.+|+||++..+...
T Consensus 107 ~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 107 LLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 1222333334457999999999987643
No 151
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.82 E-value=8e-06 Score=75.08 Aligned_cols=78 Identities=23% Similarity=0.329 Sum_probs=50.7
Q ss_pred cCcceEeecchhhhhcccCCCcc---hhHHHHHHHHHHhhcCCCC----C-------------CCCcEEEEeecCCcccc
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQEN---ETSRRLKTEFLISLDGAST----L-------------DDDLVLVIGATNRPQEL 282 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~---~~~~r~v~~lL~~mdg~~~----~-------------~~~~v~vi~aTN~~~~l 282 (343)
+.++||||||+|.+.+.|++... .....+.+.||..|++..- . ..+.+++|+||| ++.|
T Consensus 136 ~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~-~~~l 214 (376)
T 1um8_A 136 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGA-FDGL 214 (376)
T ss_dssp HTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEEC-CTTH
T ss_pred cCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCC-HHHH
Confidence 35789999999999988654322 2233588999999997420 0 012267888888 7889
Q ss_pred cHHHHHhhhceEeccCCCCC
Q psy4538 283 DEAARRRLVKRLYIPLPDEQ 302 (343)
Q Consensus 283 D~allRR~d~~i~~~~P~~~ 302 (343)
|+++.|||+ ...+++|...
T Consensus 215 ~~~l~~R~~-~~~~g~~~~~ 233 (376)
T 1um8_A 215 AEIIKKRTT-QNVLGFTQEK 233 (376)
T ss_dssp HHHTTTSCS-SCCCSCCCSS
T ss_pred HHHHHHHhc-ccccCCCchh
Confidence 999999998 5677887654
No 152
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.80 E-value=3.1e-05 Score=70.35 Aligned_cols=71 Identities=23% Similarity=0.283 Sum_probs=45.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccc----c------------chHHHHHHHHHHHHHhcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKW----Y------------GEGEKMVRALFAVASVHQPSII 61 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~----~------------~~~~~~l~~~~~~~~~~~p~vl 61 (343)
++|+||||+|||+++..++..+ +..+++++........ . ...++.+..+........|.+|
T Consensus 64 v~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~lI 143 (349)
T 2zr9_A 64 IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDII 143 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCEE
Confidence 4789999999999999998654 5567777664322110 0 0122222222223334569999
Q ss_pred Eecccccccc
Q psy4538 62 FIDEIDSLLC 71 (343)
Q Consensus 62 ~iDeid~l~~ 71 (343)
+||++..+..
T Consensus 144 VIDsl~~l~~ 153 (349)
T 2zr9_A 144 VIDSVAALVP 153 (349)
T ss_dssp EEECGGGCCC
T ss_pred EEcChHhhcc
Confidence 9999999874
No 153
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.78 E-value=0.00014 Score=61.42 Aligned_cols=31 Identities=32% Similarity=0.488 Sum_probs=23.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISA 31 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~ 31 (343)
++|+||+|+|||++++.++..+ +..++.++.
T Consensus 26 ~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 26 IALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 3689999999999999998654 445555543
No 154
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.75 E-value=2.5e-05 Score=70.68 Aligned_cols=67 Identities=15% Similarity=0.195 Sum_probs=48.2
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcC----CCCCC-----CCcEEEEeecCCcc-cccHHHHHhhhce
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDG----ASTLD-----DDLVLVIGATNRPQ-ELDEAARRRLVKR 293 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg----~~~~~-----~~~v~vi~aTN~~~-~lD~allRR~d~~ 293 (343)
.++||||||+|.+... +.+.|+..|+. +...+ ...+++|+|||..+ .++++|++||+.+
T Consensus 144 ~~~vl~iDEi~~l~~~-----------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~ 212 (350)
T 1g8p_A 144 NRGYLYIDECNLLEDH-----------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLS 212 (350)
T ss_dssp TTEEEEETTGGGSCHH-----------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEE
T ss_pred CCCEEEEeChhhCCHH-----------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceE
Confidence 4689999999987533 34556665543 11100 11489999999755 8999999999999
Q ss_pred EeccCCCC
Q psy4538 294 LYIPLPDE 301 (343)
Q Consensus 294 i~~~~P~~ 301 (343)
++++.|+.
T Consensus 213 ~~l~~~~~ 220 (350)
T 1g8p_A 213 VEVLSPRD 220 (350)
T ss_dssp EECCCCCS
T ss_pred EEcCCCCc
Confidence 99999854
No 155
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.75 E-value=6.1e-05 Score=63.28 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=27.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISAST 33 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~ 33 (343)
++|+||||+|||++++.++...+.++++++...
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 378999999999999999986677777777654
No 156
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.74 E-value=0.00022 Score=69.36 Aligned_cols=147 Identities=12% Similarity=0.116 Sum_probs=77.5
Q ss_pred CEEeCCCCchHHHHHHHHHHH-------cCCcEEEEeccccccc-----c----------------c-chHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ-------CKATFFCISASTLTSK-----W----------------Y-GEGEKMVRALFA 51 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~-------l~~~~~~v~~~~l~~~-----~----------------~-~~~~~~l~~~~~ 51 (343)
+.|+||+|+|||++|+.+++. .....++++....... . . .........+..
T Consensus 150 v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~ 229 (591)
T 1z6t_A 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRI 229 (591)
T ss_dssp EEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHH
Confidence 479999999999999998643 2123444443321000 0 0 011111122222
Q ss_pred HHHh-cCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEc
Q psy4538 52 VASV-HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIP 130 (343)
Q Consensus 52 ~~~~-~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~ 130 (343)
.... ..|.+|+|||++.. . .+.. + .....||.||+....... . . ...+.++
T Consensus 230 ~l~~~~~~~LLVLDdv~~~-------------~----~l~~---l----~~~~~ilvTsR~~~~~~~-~--~-~~~~~v~ 281 (591)
T 1z6t_A 230 LMLRKHPRSLLILDDVWDS-------------W----VLKA---F----DSQCQILLTTRDKSVTDS-V--M-GPKYVVP 281 (591)
T ss_dssp HHHHTCTTCEEEEEEECCH-------------H----HHHT---T----CSSCEEEEEESCGGGGTT-C--C-SCEEEEE
T ss_pred HHccCCCCeEEEEeCCCCH-------------H----HHHH---h----cCCCeEEEECCCcHHHHh-c--C-CCceEee
Confidence 2221 26889999999742 0 1111 1 123355556655432211 0 1 2334443
Q ss_pred ---CCCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHHH
Q psy4538 131 ---LPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCR 177 (343)
Q Consensus 131 ---~P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~ 177 (343)
..+.++-.+++...+...... .......+++.+.|. |--|..+..
T Consensus 282 ~l~~L~~~ea~~L~~~~~~~~~~~-~~~~~~~i~~~~~G~-PLal~~~a~ 329 (591)
T 1z6t_A 282 VESSLGKEKGLEILSLFVNMKKAD-LPEQAHSIIKECKGS-PLVVSLIGA 329 (591)
T ss_dssp CCSSCCHHHHHHHHHHHHTSCGGG-SCTHHHHHHHHHTTC-HHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhCCCccc-ccHHHHHHHHHhCCC-cHHHHHHHH
Confidence 578888889998876532111 134678899999875 445554443
No 157
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.71 E-value=1.4e-05 Score=65.52 Aligned_cols=29 Identities=34% Similarity=0.478 Sum_probs=26.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI 29 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v 29 (343)
|+|+||+||||||+++.+|+.+|.+++..
T Consensus 8 i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 8 IYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 47899999999999999999999988744
No 158
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.69 E-value=1.1e-05 Score=73.88 Aligned_cols=59 Identities=12% Similarity=0.181 Sum_probs=39.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccccccchHHHHHHHHHHHHHhcCCcEEEecccccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLLC 71 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~~~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~l~~ 71 (343)
++|+||+|+||||+++.++...+..++.+....- ..... .....+..++++||++.+..
T Consensus 172 i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~~~------lg~~~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 172 WLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLNFE------LGVAIDQFLVVFEDVKGTGG 230 (377)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THHHH------HGGGTTCSCEEETTCCCSTT
T ss_pred EEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHHHH------HHHhcchhHHHHHHHHHHHH
Confidence 4789999999999999999998776654332211 00111 11223456789999998764
No 159
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.69 E-value=6.2e-05 Score=67.67 Aligned_cols=71 Identities=18% Similarity=0.220 Sum_probs=45.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---------CCcEEEEeccccc--c-------cc---------------cchHH---H
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---------KATFFCISASTLT--S-------KW---------------YGEGE---K 44 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---------~~~~~~v~~~~l~--~-------~~---------------~~~~~---~ 44 (343)
++|+||||+|||+++..+|... +..+++++..... . .. ....+ .
T Consensus 110 ~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~ 189 (324)
T 2z43_A 110 TEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIA 189 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHH
T ss_pred EEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHHHHHH
Confidence 4799999999999999999875 5567777765421 0 00 00011 1
Q ss_pred HHHHHHHHHHh-cCCcEEEecccccccc
Q psy4538 45 MVRALFAVASV-HQPSIIFIDEIDSLLC 71 (343)
Q Consensus 45 ~l~~~~~~~~~-~~p~vl~iDeid~l~~ 71 (343)
.+..+...... ..+.+|+||.+..+..
T Consensus 190 ~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 190 IVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 22233333344 5789999999998864
No 160
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.69 E-value=6.7e-05 Score=68.22 Aligned_cols=71 Identities=20% Similarity=0.258 Sum_probs=45.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccccc----c-----------chHHHHHHHHHH-HHHhcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSKW----Y-----------GEGEKMVRALFA-VASVHQPSII 61 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~~----~-----------~~~~~~l~~~~~-~~~~~~p~vl 61 (343)
++|+|+||+|||++|..++..+ +.++++++........ . ......+..++. ..+...+.+|
T Consensus 66 i~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~lV 145 (356)
T 1u94_A 66 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 145 (356)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCCEE
Confidence 4799999999999999998764 5677778774322110 0 001112222222 2234678999
Q ss_pred Eecccccccc
Q psy4538 62 FIDEIDSLLC 71 (343)
Q Consensus 62 ~iDeid~l~~ 71 (343)
+||.+..+..
T Consensus 146 VIDsl~~l~~ 155 (356)
T 1u94_A 146 VVDSVAALTP 155 (356)
T ss_dssp EEECGGGCCC
T ss_pred EEcCHHHhcc
Confidence 9999999874
No 161
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.68 E-value=2.9e-05 Score=69.14 Aligned_cols=67 Identities=19% Similarity=0.173 Sum_probs=51.1
Q ss_pred cceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCC-------CcEEEEeecCC-------------------
Q psy4538 225 PSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDD-------DLVLVIGATNR------------------- 278 (343)
Q Consensus 225 p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~-------~~v~vi~aTN~------------------- 278 (343)
.+||||||+|.+-+ .+.+.|+..|+.-.-... ..+++|+|||.
T Consensus 120 ~~vl~lDEi~~l~~-----------~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~ 188 (311)
T 4fcw_A 120 YSVILFDAIEKAHP-----------DVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIR 188 (311)
T ss_dssp SEEEEEETGGGSCH-----------HHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHH
T ss_pred CeEEEEeChhhcCH-----------HHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHH
Confidence 47999999998742 367778887765331100 13789999999
Q ss_pred -------cccccHHHHHhhhceEeccCCCCC
Q psy4538 279 -------PQELDEAARRRLVKRLYIPLPDEQ 302 (343)
Q Consensus 279 -------~~~lD~allRR~d~~i~~~~P~~~ 302 (343)
.+.++|+|+.||+..+.|+.|+.+
T Consensus 189 ~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~ 219 (311)
T 4fcw_A 189 DEVFKVLQQHFRPEFLNRLDEIVVFRPLTKE 219 (311)
T ss_dssp HHTHHHHHHHSCHHHHTTCSEEEECCCCCHH
T ss_pred HHHHHHHHHhCCHHHHhcCCeEEEeCCCCHH
Confidence 678999999999999999988754
No 162
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.67 E-value=2.2e-05 Score=63.31 Aligned_cols=30 Identities=23% Similarity=0.193 Sum_probs=26.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCIS 30 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~ 30 (343)
|+|.||+|+||||+++.+++.++.+++..+
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 478999999999999999999998876444
No 163
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.66 E-value=4.8e-05 Score=62.49 Aligned_cols=112 Identities=16% Similarity=0.041 Sum_probs=56.2
Q ss_pred EEeCCCCchHHHHHHHHHHHc---CCcEEEEeccc--------ccccc----cchHHHHHHHHHHHHHhcCCcEEEeccc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC---KATFFCISAST--------LTSKW----YGEGEKMVRALFAVASVHQPSIIFIDEI 66 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~--------l~~~~----~~~~~~~l~~~~~~~~~~~p~vl~iDei 66 (343)
+++||+|+|||+++..++..+ |..++.+.... +.+.. ..........++..+. ..+.+|+|||+
T Consensus 7 vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviIDE~ 85 (184)
T 2orw_A 7 VITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFIDEV 85 (184)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEEECCG
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEEECc
Confidence 689999999999986666543 55555443220 00000 0000000111222111 24679999999
Q ss_pred ccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEec-C---CCchhhHHHHhccceEEEEc
Q psy4538 67 DSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGAT-N---RPQELDEAARRRLVKRLYIP 130 (343)
Q Consensus 67 d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~t-n---~~~~l~~~l~~rf~~~i~~~ 130 (343)
+.+.+ .+...+....+. +..+++.|.+ + .+....+.+..+.+...++.
T Consensus 86 Q~~~~-----------~~~~~l~~l~~~-----~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 86 QFFNP-----------SLFEVVKDLLDR-----GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp GGSCT-----------THHHHHHHHHHT-----TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred ccCCH-----------HHHHHHHHHHHC-----CCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 97621 111122222221 3345555553 3 45567777887777555543
No 164
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.64 E-value=0.0001 Score=66.79 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=26.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---------CCcEEEEeccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---------KATFFCISAST 33 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---------~~~~~~v~~~~ 33 (343)
++|+||||+|||+++..+|... +...++++...
T Consensus 125 ~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 125 TEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4789999999999999999862 45677777654
No 165
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.64 E-value=0.00012 Score=64.78 Aligned_cols=71 Identities=15% Similarity=0.242 Sum_probs=45.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-----CCcEEEEeccccccc----------------ccchHHHH-HHHHHHH---HHh
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-----KATFFCISASTLTSK----------------WYGEGEKM-VRALFAV---ASV 55 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-----~~~~~~v~~~~l~~~----------------~~~~~~~~-l~~~~~~---~~~ 55 (343)
++++||||+|||+|+..++... +..+++++...-... .....++. +. +... ...
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~-i~~~l~~i~~ 109 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRID-MVNQLDAIER 109 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHH-HHHHHHTCCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHH-HHHHHHHhhc
Confidence 4799999999999988876654 567788877543211 00112222 21 2222 244
Q ss_pred cCCcEEEeccccccccc
Q psy4538 56 HQPSIIFIDEIDSLLCQ 72 (343)
Q Consensus 56 ~~p~vl~iDeid~l~~~ 72 (343)
..|.+++||-+..+.+.
T Consensus 110 ~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 110 GEKVVVFIDSLGNLASK 126 (333)
T ss_dssp TCCEEEEEECSTTCBCC
T ss_pred cCceEEEEecccccccc
Confidence 57999999999999753
No 166
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.63 E-value=2.9e-05 Score=63.08 Aligned_cols=28 Identities=25% Similarity=0.502 Sum_probs=25.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~ 28 (343)
|+|.|+||+||||+++.+|+.++.+++.
T Consensus 7 i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 7 IVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 4689999999999999999999987764
No 167
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.63 E-value=2.2e-05 Score=65.32 Aligned_cols=29 Identities=38% Similarity=0.583 Sum_probs=25.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI 29 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v 29 (343)
|+|.||+|+||||+++.+++.+|.+++..
T Consensus 28 i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 28 IFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 47899999999999999999999887643
No 168
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.62 E-value=6.4e-05 Score=68.78 Aligned_cols=71 Identities=23% Similarity=0.201 Sum_probs=54.7
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCc---ccccHHHHHhhhc-eEeccCC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRP---QELDEAARRRLVK-RLYIPLP 299 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~---~~lD~allRR~d~-~i~~~~P 299 (343)
.|+|||+||+|.+...+ .....+.+++.+++.... +..+.+|++||.+ +.+++++.+||.. .++|+.|
T Consensus 130 ~~~vlilDEi~~l~~~~------~~~~~l~~l~~~~~~~~~--~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l 201 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRP------GGQDLLYRITRINQELGD--RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPY 201 (387)
T ss_dssp SEEEEEEETTTHHHHST------THHHHHHHHHHGGGCC-------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCC
T ss_pred CeEEEEEccHhhhcccC------CCChHHHhHhhchhhcCC--CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCC
Confidence 58999999999997654 234678888888876541 1238999999998 7899999999986 8888888
Q ss_pred CCC
Q psy4538 300 DEQ 302 (343)
Q Consensus 300 ~~~ 302 (343)
+.+
T Consensus 202 ~~~ 204 (387)
T 2v1u_A 202 TAP 204 (387)
T ss_dssp CHH
T ss_pred CHH
Confidence 754
No 169
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.61 E-value=2.4e-05 Score=64.09 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=25.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI 29 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v 29 (343)
|+|.|+||+||||+++.+++.+|.+++..
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 57999999999999999999999887643
No 170
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.59 E-value=3.8e-05 Score=62.06 Aligned_cols=27 Identities=44% Similarity=0.830 Sum_probs=24.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~ 27 (343)
+.|.||+|+||||+++.++..++.+++
T Consensus 7 i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 7 IFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 468999999999999999999997655
No 171
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.58 E-value=2.8e-05 Score=62.64 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=26.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI 29 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v 29 (343)
|+|.|++||||||+++.+++.+|.+++..
T Consensus 10 i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 10 LVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 47899999999999999999999988743
No 172
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.57 E-value=2.8e-05 Score=63.41 Aligned_cols=29 Identities=41% Similarity=0.729 Sum_probs=25.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI 29 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v 29 (343)
|+|+|+||+||||+++.+++.++..++..
T Consensus 14 i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 14 ILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 57999999999999999999999877643
No 173
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.57 E-value=2.6e-05 Score=70.24 Aligned_cols=68 Identities=19% Similarity=0.325 Sum_probs=46.9
Q ss_pred cceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCC-------CCCCCcEEEEeecCCcc-----cccHHHHHhhhc
Q psy4538 225 PSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAS-------TLDDDLVLVIGATNRPQ-----ELDEAARRRLVK 292 (343)
Q Consensus 225 p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~-------~~~~~~v~vi~aTN~~~-----~lD~allRR~d~ 292 (343)
.+|||+||+|.+-+ ...+.|+..|+... ......+++|+|+|..+ .+++++++||+.
T Consensus 110 ~~vl~iDEi~~~~~-----------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~ 178 (331)
T 2r44_A 110 SNFILADEVNRSPA-----------KVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMM 178 (331)
T ss_dssp SSEEEEETGGGSCH-----------HHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSE
T ss_pred ccEEEEEccccCCH-----------HHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeE
Confidence 38999999998643 24555666665321 00122367778888443 389999999999
Q ss_pred eEeccCCCCCC
Q psy4538 293 RLYIPLPDEQK 303 (343)
Q Consensus 293 ~i~~~~P~~~~ 303 (343)
.+++++|+.++
T Consensus 179 ~i~i~~p~~~~ 189 (331)
T 2r44_A 179 KIHLTYLDKES 189 (331)
T ss_dssp EEECCCCCHHH
T ss_pred EEEcCCCCHHH
Confidence 99999998753
No 174
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.56 E-value=0.0006 Score=57.62 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=40.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccc-------ccccccchH-----HHHHHHHHHHHHh----cCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISAST-------LTSKWYGEG-----EKMVRALFAVASV----HQPSII 61 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~-------l~~~~~~~~-----~~~l~~~~~~~~~----~~p~vl 61 (343)
++++||+|+|||+++..++..+ |..++.+.... +.+. .|.. ......++..+.. ..+.+|
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 3689999999999998887766 55666664322 1111 0100 0011233333332 347899
Q ss_pred Eecccccc
Q psy4538 62 FIDEIDSL 69 (343)
Q Consensus 62 ~iDeid~l 69 (343)
+|||+..+
T Consensus 94 iIDEaQ~l 101 (223)
T 2b8t_A 94 GIDEVQFF 101 (223)
T ss_dssp EECSGGGS
T ss_pred EEecCccC
Confidence 99999875
No 175
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.56 E-value=3.8e-05 Score=66.48 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=27.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISAS 32 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~ 32 (343)
++|.||+||||||+++.+|+.++..++..+..
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 47899999999999999999999888766553
No 176
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.54 E-value=1.1e-05 Score=78.47 Aligned_cols=67 Identities=21% Similarity=0.184 Sum_probs=47.9
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCC---------CCCCCcEEEEeecCCcc-------------c
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAS---------TLDDDLVLVIGATNRPQ-------------E 281 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~---------~~~~~~v~vi~aTN~~~-------------~ 281 (343)
..+|+||||+|.+-.. ..+.|+..|+.-. ..-...+.+|||||.+. .
T Consensus 391 ~~gil~IDEid~l~~~-----------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~ 459 (595)
T 3f9v_A 391 DGGIAVIDEIDKMRDE-----------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNIN 459 (595)
T ss_dssp SSSEECCTTTTCCCSH-----------HHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTC
T ss_pred CCCcEEeehhhhCCHh-----------HhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccC
Confidence 3589999999987432 4566777776322 11112478999999987 8
Q ss_pred ccHHHHHhhhc-eEeccCCCC
Q psy4538 282 LDEAARRRLVK-RLYIPLPDE 301 (343)
Q Consensus 282 lD~allRR~d~-~i~~~~P~~ 301 (343)
|++|+++|||. .+..++|+.
T Consensus 460 l~~aLl~RFDl~~~~~~~~~~ 480 (595)
T 3f9v_A 460 LPPTILSRFDLIFILKDQPGE 480 (595)
T ss_dssp SCSSSGGGCSCCEEECCTTHH
T ss_pred CCHHHHhhCeEEEEeCCCCCH
Confidence 99999999994 556677764
No 177
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.52 E-value=0.00042 Score=59.29 Aligned_cols=19 Identities=42% Similarity=0.564 Sum_probs=17.5
Q ss_pred CEEeCCCCchHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVA 19 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la 19 (343)
+.|.||+|+||||+++.++
T Consensus 33 ~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 4689999999999999998
No 178
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.51 E-value=0.00016 Score=61.04 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+.|.||+|+||||+++.++..+
T Consensus 28 ~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999854
No 179
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.51 E-value=5.6e-05 Score=61.04 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=25.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~ 28 (343)
|+|.|++|+||||+++.+++.+|.+++.
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 4789999999999999999999987664
No 180
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.49 E-value=3.2e-05 Score=69.28 Aligned_cols=70 Identities=21% Similarity=0.244 Sum_probs=50.7
Q ss_pred cCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCC-------C-C------CCCcEEEEeecCCcccccHHHHH
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAS-------T-L------DDDLVLVIGATNRPQELDEAARR 288 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~-------~-~------~~~~v~vi~aTN~~~~lD~allR 288 (343)
+.+++||+||+|.+... ..+.|+..|+... . . ....+.+|+|||+++.+++++.+
T Consensus 89 ~~~~~l~lDEi~~l~~~-----------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~ 157 (324)
T 1hqc_A 89 EEGDILFIDEIHRLSRQ-----------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS 157 (324)
T ss_dssp CTTCEEEETTTTSCCHH-----------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT
T ss_pred cCCCEEEEECCcccccc-----------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh
Confidence 46889999999987632 2344555554321 0 0 00127899999999999999999
Q ss_pred hhhceEeccCCCCCC
Q psy4538 289 RLVKRLYIPLPDEQK 303 (343)
Q Consensus 289 R~d~~i~~~~P~~~~ 303 (343)
||+.++.++.|+.++
T Consensus 158 R~~~~i~l~~~~~~e 172 (324)
T 1hqc_A 158 RFGIVEHLEYYTPEE 172 (324)
T ss_dssp TCSCEEECCCCCHHH
T ss_pred cccEEEecCCCCHHH
Confidence 999999999988653
No 181
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.49 E-value=0.00023 Score=65.67 Aligned_cols=72 Identities=22% Similarity=0.341 Sum_probs=42.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---------CCcEEEEeccccccc--------ccc----------------hH---HH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---------KATFFCISASTLTSK--------WYG----------------EG---EK 44 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---------~~~~~~v~~~~l~~~--------~~~----------------~~---~~ 44 (343)
++|+||||+|||+|++.++-.. +...++++....... ..+ .. ..
T Consensus 181 ~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~~~~~~ 260 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLR 260 (400)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCChHHHHH
Confidence 4689999999999999876433 234667766442110 000 00 11
Q ss_pred HHHHHHHHHHhcCCcEEEeccccccccc
Q psy4538 45 MVRALFAVASVHQPSIIFIDEIDSLLCQ 72 (343)
Q Consensus 45 ~l~~~~~~~~~~~p~vl~iDeid~l~~~ 72 (343)
.+..+........|.+|+||++-.++..
T Consensus 261 ~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 261 LLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp HHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred HHHHHHHHHHhcCCceEEecchhhhCch
Confidence 1222233334467999999999887654
No 182
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.49 E-value=5.1e-05 Score=62.40 Aligned_cols=28 Identities=29% Similarity=0.557 Sum_probs=25.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~ 28 (343)
|+|.|+||+||||+++.+++.++.+++.
T Consensus 8 I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 4789999999999999999999987654
No 183
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.49 E-value=5.9e-05 Score=60.76 Aligned_cols=28 Identities=32% Similarity=0.549 Sum_probs=24.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI 29 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v 29 (343)
|+|.||||+||||+++.+ +.+|.+++.+
T Consensus 4 I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 478999999999999999 8889887643
No 184
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.49 E-value=3.7e-05 Score=63.07 Aligned_cols=28 Identities=39% Similarity=0.565 Sum_probs=24.5
Q ss_pred CEEeCCCCchHHHHHHHHHHH-cCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ-CKATFFC 28 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~-l~~~~~~ 28 (343)
|+|+|++||||||+++.+++. +|.+++.
T Consensus 13 I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 13 ILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 579999999999999999999 6876653
No 185
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.49 E-value=0.00021 Score=62.01 Aligned_cols=34 Identities=26% Similarity=0.466 Sum_probs=28.4
Q ss_pred CEEeCCCCchHHHHHHHHHHH---cCCcEEEEecccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ---CKATFFCISASTL 34 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~---l~~~~~~v~~~~l 34 (343)
|+|.|+||+||||+++.++.. .|.+++.++...+
T Consensus 7 Ivl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 7 IILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 578999999999999999998 7888776665544
No 186
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.48 E-value=0.00012 Score=66.79 Aligned_cols=64 Identities=20% Similarity=0.273 Sum_probs=46.9
Q ss_pred cCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeec-----------CCcccccHHHHHhhh
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGAT-----------NRPQELDEAARRRLV 291 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aT-----------N~~~~lD~allRR~d 291 (343)
..|+||||||+|.+-. ...+.|+..|+.... . +++++++ |.++.+|+++++||.
T Consensus 188 ~~~~vl~IDEi~~l~~-----------~~~~~L~~~le~~~~--~--~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~ 252 (368)
T 3uk6_A 188 IIPGVLFIDEVHMLDI-----------ESFSFLNRALESDMA--P--VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLL 252 (368)
T ss_dssp -CBCEEEEESGGGSBH-----------HHHHHHHHHTTCTTC--C--EEEEEESCSEEECBTSSCEEETTCCHHHHTTEE
T ss_pred ccCceEEEhhccccCh-----------HHHHHHHHHhhCcCC--C--eeeeecccceeeeeccCCCCcccCCHHHHhhcc
Confidence 4589999999998742 356778888876433 2 5544443 458899999999998
Q ss_pred ceEeccCCCCC
Q psy4538 292 KRLYIPLPDEQ 302 (343)
Q Consensus 292 ~~i~~~~P~~~ 302 (343)
. ++|+.|+.+
T Consensus 253 ~-i~~~~~~~~ 262 (368)
T 3uk6_A 253 I-VSTTPYSEK 262 (368)
T ss_dssp E-EEECCCCHH
T ss_pred E-EEecCCCHH
Confidence 7 788888764
No 187
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.48 E-value=4.6e-05 Score=63.34 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=25.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI 29 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v 29 (343)
|+|.|+||+||||+++.+++.++.+++..
T Consensus 23 I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 23 VLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 47899999999999999999999886544
No 188
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.48 E-value=0.00056 Score=63.60 Aligned_cols=201 Identities=12% Similarity=0.058 Sum_probs=91.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccccccc----------------c----cchHHHHHHHHHHHHHhcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSK----------------W----YGEGEKMVRALFAVASVHQ 57 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~----------------~----~~~~~~~l~~~~~~~~~~~ 57 (343)
+++.||+|+||||++..+|..+ |..+..+++...... + ...........+..+....
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~~~~ 179 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNK 179 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTTTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHHhcC
Confidence 4688999999999999998766 666666654322110 0 0011222334445555557
Q ss_pred CcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEec-CCCchh--hHHHHhccc-eEEEEcCCC
Q psy4538 58 PSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGAT-NRPQEL--DEAARRRLV-KRLYIPLPD 133 (343)
Q Consensus 58 p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~t-n~~~~l--~~~l~~rf~-~~i~~~~P~ 133 (343)
+.+++||....+... . +......+..+...+. ...++++..+ ...+.. -..+..... ..+-+..-+
T Consensus 180 ~DvvIIDTaGr~~~~---~-d~~lm~el~~i~~~~~------pd~vlLVlDa~~gq~a~~~a~~f~~~~~~~gVIlTKlD 249 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYG---E-ETKLLEEMKEMYDVLK------PDDVILVIDASIGQKAYDLASRFHQASPIGSVIITKMD 249 (433)
T ss_dssp CSEEEEEECCCSSSC---C-TTHHHHHHHHHHHHHC------CSEEEEEEEGGGGGGGHHHHHHHHHHCSSEEEEEECGG
T ss_pred CCEEEEECCCCcccc---C-CHHHHHHHHHHHHhhC------CcceEEEEeCccchHHHHHHHHHhcccCCcEEEEeccc
Confidence 889999987543100 1 1111222222333221 2334444433 322221 122332222 234455444
Q ss_pred HHHHHHHHHHHHhhhCC---------C---CChhhHHHHHHHCCCCCHHHHHHHHHHHhcccccccccccccccCCc--c
Q psy4538 134 EQARCEIVTKLLRNITN---------S---LTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSIDLSRIDALDVR--P 199 (343)
Q Consensus 134 ~~er~~il~~~l~~~~~---------~---~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~--~ 199 (343)
...+...........+. . +.....+.++...-| .+|+..++..+...........-....... .
T Consensus 250 ~~a~~G~als~~~~~g~Pi~fig~Ge~v~dL~~f~p~~~~~~llg--~gd~~~l~e~~~~~~~~~~~~~~~~k~~~g~~~ 327 (433)
T 3kl4_A 250 GTAKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILG--MGDIESILEKVKGLEEYDKIQKKMEDVMEGKGK 327 (433)
T ss_dssp GCSCHHHHHHHHHHHTCEEEEEECCSSSSCEEECCHHHHHHHHHC--SSHHHHHHHHHHHC-------------------
T ss_pred ccccchHHHHHHHHHCCCEEEEECCCChHhCccCCHHHHHHHhcC--CchHHHHHHHHHHhhhHHHHHHHHHHHHcCCCC
Confidence 43332222211111111 1 122245566666544 368888888875433222101111111223 6
Q ss_pred cChhHHHHHHHhcC
Q psy4538 200 ISIDDFRDALKTVR 213 (343)
Q Consensus 200 i~~~d~~~a~~~~~ 213 (343)
.+.+||.+.+++++
T Consensus 328 f~~~d~~~q~~~~~ 341 (433)
T 3kl4_A 328 LTLRDVYAQIIALR 341 (433)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 89999988887754
No 189
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.47 E-value=0.00078 Score=64.98 Aligned_cols=149 Identities=9% Similarity=0.125 Sum_probs=76.4
Q ss_pred CEEeCCCCchHHHHHHHHHH----HcCCc---EEEEeccccc------------ccc--------c---ch-HHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAA----QCKAT---FFCISASTLT------------SKW--------Y---GE-GEKMVRAL 49 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~----~l~~~---~~~v~~~~l~------------~~~--------~---~~-~~~~l~~~ 49 (343)
|.|+|+.|+|||+||+.+++ ..... .++++.+... ... . .. ....+...
T Consensus 155 v~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~ 234 (549)
T 2a5y_B 155 LFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRM 234 (549)
T ss_dssp EEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHHH
Confidence 46899999999999999997 33221 2334433311 000 0 00 01112223
Q ss_pred HHHHHhcC-CcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEE
Q psy4538 50 FAVASVHQ-PSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLY 128 (343)
Q Consensus 50 ~~~~~~~~-p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~ 128 (343)
+....... +.+|+||+++... .. .+.. . .+ ..||.||+...... .. ......+.
T Consensus 235 l~~~L~~~kr~LlVLDdv~~~~------------~~--~~~~-~------~g--s~ilvTTR~~~v~~-~~-~~~~~~~~ 289 (549)
T 2a5y_B 235 ICNALIDRPNTLFVFDDVVQEE------------TI--RWAQ-E------LR--LRCLVTTRDVEISN-AA-SQTCEFIE 289 (549)
T ss_dssp HHHHHTTSTTEEEEEEEECCHH------------HH--HHHH-H------TT--CEEEEEESBGGGGG-GC-CSCEEEEE
T ss_pred HHHHHcCCCcEEEEEECCCCch------------hh--cccc-c------CC--CEEEEEcCCHHHHH-Hc-CCCCeEEE
Confidence 33333343 7899999998531 00 1111 1 12 24555665533211 00 01224688
Q ss_pred EcCCCHHHHHHHHHHHHhhhCC-CCChhhHHHHHHHCCCCCHHHHHHH
Q psy4538 129 IPLPDEQARCEIVTKLLRNITN-SLTVDDIEEVGRMTTDFSGADMASL 175 (343)
Q Consensus 129 ~~~P~~~er~~il~~~l~~~~~-~~~~~~~~~la~~t~g~s~~dl~~l 175 (343)
++..+.++-.+++......... ....+....+++.+.|+ |-.|+.+
T Consensus 290 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~Gl-PLAl~~~ 336 (549)
T 2a5y_B 290 VTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN-PATLMMF 336 (549)
T ss_dssp CCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCC-hHHHHHH
Confidence 8999999998988876432211 11112456677778765 4344433
No 190
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.46 E-value=0.00014 Score=60.74 Aligned_cols=64 Identities=19% Similarity=0.185 Sum_probs=48.6
Q ss_pred cCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHHhhhceEeccCCCCC
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQ 302 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allRR~d~~i~~~~P~~~ 302 (343)
..++||||||+|.+.+. ..+.|+..|+.... + +.+|++||.++.+++++.+||. .+.++.|+.+
T Consensus 101 ~~~~vliiDe~~~l~~~-----------~~~~l~~~l~~~~~--~--~~~i~~~~~~~~~~~~l~~r~~-~i~~~~~~~~ 164 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-----------AQAALRRTMEMYSK--S--CRFILSCNYVSRIIEPIQSRCA-VFRFKPVPKE 164 (226)
T ss_dssp CSCEEEEEETGGGSCHH-----------HHHHHHHHHHHTTT--T--EEEEEEESCGGGSCHHHHTTSE-EEECCCCCHH
T ss_pred cCceEEEEeChhhcCHH-----------HHHHHHHHHHhcCC--C--CeEEEEeCChhhcCHHHHHhCc-eeecCCCCHH
Confidence 46899999999998542 24455555554332 3 7889999999999999999998 8888877754
No 191
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.46 E-value=6.2e-05 Score=61.60 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=24.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~ 27 (343)
|+|.|+|||||||+++.+++.+|.+++
T Consensus 7 I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 478999999999999999999987654
No 192
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.45 E-value=5.4e-05 Score=60.82 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=25.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~ 28 (343)
|+|.|++|+||||+++.+++.++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 5789999999999999999999988764
No 193
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.45 E-value=7.1e-05 Score=62.24 Aligned_cols=28 Identities=32% Similarity=0.735 Sum_probs=24.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~ 28 (343)
|+|.|++|+||||+++.+++.+|..++.
T Consensus 21 I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 21 IVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4789999999999999999999877654
No 194
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.45 E-value=0.00097 Score=56.80 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=23.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISA 31 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~ 31 (343)
++|+||||+|||+++..++... +..+++++.
T Consensus 26 ~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4789999999999988886643 556666654
No 195
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.44 E-value=0.00065 Score=55.91 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=20.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+.|.||+|+||||+++.++..+
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhhc
Confidence 4689999999999999999876
No 196
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.44 E-value=7.7e-05 Score=62.69 Aligned_cols=29 Identities=24% Similarity=0.497 Sum_probs=25.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI 29 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v 29 (343)
|+|.||||+||||+++.+++++|.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 57899999999999999999998876644
No 197
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.43 E-value=0.00018 Score=62.18 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=29.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTL 34 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l 34 (343)
++|.|+||+||||+++.++..++..++.++...+
T Consensus 35 i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp EEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 4789999999999999999999866677777665
No 198
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.43 E-value=7.8e-05 Score=61.31 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=24.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~ 28 (343)
|+|.|+|||||||+++.+++.+|.+++.
T Consensus 6 I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 4789999999999999999999987643
No 199
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.42 E-value=8e-05 Score=62.56 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=25.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI 29 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v 29 (343)
|+|.||||+||||+++.+++.+|.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 47899999999999999999999877644
No 200
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.42 E-value=7.9e-05 Score=62.34 Aligned_cols=33 Identities=30% Similarity=0.531 Sum_probs=27.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLT 35 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~ 35 (343)
|+|.||||+||+|.|+.+|+.+|.+. ++..++.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 47889999999999999999998765 4554543
No 201
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.41 E-value=5.4e-05 Score=62.45 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=25.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI 29 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v 29 (343)
|+|.|+||+||||+++.+++.++.+++..
T Consensus 12 I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 12 IFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 47899999999999999999999876543
No 202
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.41 E-value=0.00096 Score=56.19 Aligned_cols=31 Identities=23% Similarity=0.186 Sum_probs=24.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISA 31 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~ 31 (343)
|++.|+||+|||+++-.+|..+ |..++.++.
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 5789999999999998888765 666655544
No 203
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.41 E-value=0.0015 Score=53.79 Aligned_cols=114 Identities=14% Similarity=0.064 Sum_probs=62.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccc---------cccccc-------------c----hHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISAST---------LTSKWY-------------G----EGEKMVRALFA 51 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~---------l~~~~~-------------~----~~~~~l~~~~~ 51 (343)
|++|+++|.|||++|-.+|-.. |..+..+.... +..... . .........+.
T Consensus 31 i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l~ 110 (196)
T 1g5t_A 31 IIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVWQ 110 (196)
T ss_dssp EEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHHH
Confidence 5789999999999999987655 77777763321 111110 0 01122333343
Q ss_pred HHH----hcCCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEE
Q psy4538 52 VAS----VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRL 127 (343)
Q Consensus 52 ~~~----~~~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i 127 (343)
.++ .....+|+|||+-....-.--. ...++..+... ....-+|.|.|.+ ++.+...-+.+-
T Consensus 111 ~a~~~l~~~~yDlvILDEi~~al~~g~l~--------~~ev~~~l~~R----p~~~~vIlTGr~a---p~~l~e~AD~VT 175 (196)
T 1g5t_A 111 HGKRMLADPLLDMVVLDELTYMVAYDYLP--------LEEVISALNAR----PGHQTVIITGRGC---HRDILDLADTVS 175 (196)
T ss_dssp HHHHHTTCTTCSEEEEETHHHHHHTTSSC--------HHHHHHHHHTS----CTTCEEEEECSSC---CHHHHHHCSEEE
T ss_pred HHHHHHhcCCCCEEEEeCCCccccCCCCC--------HHHHHHHHHhC----cCCCEEEEECCCC---cHHHHHhCccee
Confidence 332 2457899999996543221111 11244444432 2334566677653 456666666554
Q ss_pred EE
Q psy4538 128 YI 129 (343)
Q Consensus 128 ~~ 129 (343)
++
T Consensus 176 em 177 (196)
T 1g5t_A 176 EL 177 (196)
T ss_dssp EC
T ss_pred ee
Confidence 44
No 204
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.40 E-value=7.9e-05 Score=66.80 Aligned_cols=66 Identities=15% Similarity=0.184 Sum_probs=51.0
Q ss_pred cCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHHhhhceEeccCCCCC
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQ 302 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allRR~d~~i~~~~P~~~ 302 (343)
..++|||+||+|.+.++ ...+.|+..|+.... + +.+|++||.++.+++++.+||. .+.|+.|+.+
T Consensus 104 ~~~~vliiDEi~~l~~~----------~~~~~L~~~le~~~~--~--~~iI~~~n~~~~l~~~l~sR~~-~i~~~~~~~~ 168 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLA----------ESQRHLRSFMEAYSS--N--CSIIITANNIDGIIKPLQSRCR-VITFGQPTDE 168 (324)
T ss_dssp SCEEEEEEESCCCGGGH----------HHHHHHHHHHHHHGG--G--CEEEEEESSGGGSCTTHHHHSE-EEECCCCCHH
T ss_pred CCCeEEEEECCcccCcH----------HHHHHHHHHHHhCCC--C--cEEEEEeCCccccCHHHHhhCc-EEEeCCCCHH
Confidence 36899999999998631 245566766765432 2 6888999999999999999995 6999989854
Q ss_pred C
Q psy4538 303 K 303 (343)
Q Consensus 303 ~ 303 (343)
+
T Consensus 169 e 169 (324)
T 3u61_B 169 D 169 (324)
T ss_dssp H
T ss_pred H
Confidence 3
No 205
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.39 E-value=5.7e-05 Score=62.46 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=24.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~ 28 (343)
|+|.|+||+||||+++.+++.+|.+++.
T Consensus 15 I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 15 IFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 4789999999999999999999976553
No 206
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.39 E-value=6.5e-05 Score=60.99 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=22.2
Q ss_pred CEEeCCCCchHHHHHHHHHH-HcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAA-QCKATFF 27 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~-~l~~~~~ 27 (343)
|+|.|+||+||||+++.+++ .++..++
T Consensus 5 I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred EEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 47899999999999999998 5554433
No 207
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.39 E-value=0.00015 Score=65.84 Aligned_cols=67 Identities=18% Similarity=0.270 Sum_probs=41.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC----CcEEEEec-cccc---------ccccchHHHHHHHHHHHHHhcCCcEEEeccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK----ATFFCISA-STLT---------SKWYGEGEKMVRALFAVASVHQPSIIFIDEI 66 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~----~~~~~v~~-~~l~---------~~~~~~~~~~l~~~~~~~~~~~p~vl~iDei 66 (343)
+++.||+|+||||++++++..++ ..++.+.- .++. ....+.........+..+...+|.+|++||.
T Consensus 126 i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDEp 205 (356)
T 3jvv_A 126 VLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGEM 205 (356)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESCC
T ss_pred EEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCCC
Confidence 47999999999999999988762 33333221 1110 0001111112344566666789999999998
Q ss_pred c
Q psy4538 67 D 67 (343)
Q Consensus 67 d 67 (343)
-
T Consensus 206 ~ 206 (356)
T 3jvv_A 206 R 206 (356)
T ss_dssp C
T ss_pred C
Confidence 5
No 208
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.39 E-value=6.2e-05 Score=61.38 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=21.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~ 27 (343)
|+|.|+||+||||+++.+++.++.+++
T Consensus 8 I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 8 IWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 478999999999999999999998876
No 209
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.38 E-value=7.2e-05 Score=61.35 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=21.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
|+|.|+||+||||+++.+++.++
T Consensus 6 I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999887
No 210
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.38 E-value=9.4e-05 Score=62.40 Aligned_cols=28 Identities=29% Similarity=0.598 Sum_probs=25.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~ 28 (343)
|+|.|+||+||||+++.+++.++.+++.
T Consensus 7 I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 7 MVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 5789999999999999999999987654
No 211
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.38 E-value=6.3e-05 Score=63.87 Aligned_cols=29 Identities=17% Similarity=0.481 Sum_probs=25.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI 29 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v 29 (343)
|+|.|+||+||||+++.+++.+|.+++..
T Consensus 10 I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 10 AVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp EEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 47899999999999999999999876543
No 212
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.38 E-value=6.8e-05 Score=61.63 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=27.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISAST 33 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~ 33 (343)
+.|.||+|+||||+++.++...+...+.++..+
T Consensus 12 i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~ 44 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 44 (191)
T ss_dssp EEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred EEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence 468999999999999999998776766666544
No 213
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.38 E-value=0.00032 Score=63.64 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=25.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---------CCcEEEEeccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---------KATFFCISAST 33 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---------~~~~~~v~~~~ 33 (343)
+.|+||+|+|||++++.++... +...++++...
T Consensus 134 ~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 3689999999999999999886 23556666543
No 214
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.37 E-value=0.00034 Score=62.35 Aligned_cols=32 Identities=25% Similarity=0.507 Sum_probs=28.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISAS 32 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~ 32 (343)
++|+||+|+|||++++.+|+.++..++.++..
T Consensus 8 i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 8 IFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 47899999999999999999999888877643
No 215
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.37 E-value=0.00012 Score=71.04 Aligned_cols=31 Identities=32% Similarity=0.389 Sum_probs=24.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISA 31 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~ 31 (343)
+++.||||||||+++++++..+ +.+++.+.+
T Consensus 207 ~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 207 VVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 4789999999999999998755 556554443
No 216
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.36 E-value=7.8e-05 Score=65.81 Aligned_cols=36 Identities=28% Similarity=0.497 Sum_probs=29.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTS 36 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~~ 36 (343)
++|.||||+||||+++.++++++..++.+++..+..
T Consensus 36 ivl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~ 71 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ 71 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHH
Confidence 478999999999999999999865567777655543
No 217
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.36 E-value=7.9e-05 Score=61.94 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=25.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI 29 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v 29 (343)
|+|.|++||||||+++.+++.+|.+++..
T Consensus 18 I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 18 IFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 47899999999999999999999866543
No 218
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.36 E-value=0.0001 Score=59.62 Aligned_cols=27 Identities=37% Similarity=0.613 Sum_probs=23.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~ 27 (343)
+.|.||+|+||||+++.++..+|..++
T Consensus 11 i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 468999999999999999999886654
No 219
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.36 E-value=0.0019 Score=61.83 Aligned_cols=73 Identities=14% Similarity=0.217 Sum_probs=49.9
Q ss_pred cEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCc--hhhHHHHhccceEEEEcCCCHHH
Q psy4538 59 SIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ--ELDEAARRRLVKRLYIPLPDEQA 136 (343)
Q Consensus 59 ~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~--~l~~~l~~rf~~~i~~~~P~~~e 136 (343)
.+|+|||++.++.... ......+..+...- ....+.+|.+|.++. .++..++..|...|.+...+..+
T Consensus 345 ivvVIDE~~~L~~~~~----~~~~~~L~~Iar~G------Ra~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~D 414 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG----KKVEELIARIAQKA------RAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKID 414 (574)
T ss_dssp EEEEESCCTTHHHHTC----HHHHHHHHHHHHHC------TTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHH
T ss_pred EEEEEeCHHHHhhhhh----HHHHHHHHHHHHHH------hhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHH
Confidence 4899999998864321 11122223332221 144577888888877 88999999999999999999888
Q ss_pred HHHHH
Q psy4538 137 RCEIV 141 (343)
Q Consensus 137 r~~il 141 (343)
...++
T Consensus 415 sr~IL 419 (574)
T 2iut_A 415 SRTIL 419 (574)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77776
No 220
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.33 E-value=0.00016 Score=68.60 Aligned_cols=66 Identities=23% Similarity=0.277 Sum_probs=46.3
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcC-------CCCCCCCcEEEEeecCCccc---ccHHHHHhhhce
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDG-------ASTLDDDLVLVIGATNRPQE---LDEAARRRLVKR 293 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg-------~~~~~~~~v~vi~aTN~~~~---lD~allRR~d~~ 293 (343)
.++|||+|||+.+- ..+.+.||..|+. ....... .|+|+|||.+.. ..+|+++||...
T Consensus 109 ~~~IL~IDEI~r~~-----------~~~q~~LL~~lee~~v~i~G~~~~~~~-~~iI~ATN~lpe~~~~~~aLldRF~~~ 176 (500)
T 3nbx_X 109 EAEIVFLDEIWKAG-----------PAILNTLLTAINERQFRNGAHVEKIPM-RLLVAASNELPEADSSLEALYDRMLIR 176 (500)
T ss_dssp GCSEEEEESGGGCC-----------HHHHHHHHHHHHSSEEECSSSEEECCC-CEEEEEESSCCCTTCTTHHHHTTCCEE
T ss_pred cceeeeHHhHhhhc-----------HHHHHHHHHHHHHHhccCCCCcCCcch-hhhhhccccCCCccccHHHHHHHHHHH
Confidence 47899999997432 2467778888853 2111111 267888886433 457999999999
Q ss_pred EeccCCCC
Q psy4538 294 LYIPLPDE 301 (343)
Q Consensus 294 i~~~~P~~ 301 (343)
+++|+|+.
T Consensus 177 i~v~~p~~ 184 (500)
T 3nbx_X 177 LWLDKVQD 184 (500)
T ss_dssp EECCSCCC
T ss_pred HHHHHhhh
Confidence 99999987
No 221
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.33 E-value=0.0001 Score=60.41 Aligned_cols=29 Identities=17% Similarity=0.347 Sum_probs=25.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI 29 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v 29 (343)
|+|.|+|||||||+++.+++.+|.+++..
T Consensus 9 I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 9 VFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 47899999999999999999999766543
No 222
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.32 E-value=0.0012 Score=69.51 Aligned_cols=148 Identities=10% Similarity=0.112 Sum_probs=80.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-------CCcEEEEeccccccc---------------------ccchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-------KATFFCISASTLTSK---------------------WYGEGEKMVRALFAV 52 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-------~~~~~~v~~~~l~~~---------------------~~~~~~~~l~~~~~~ 52 (343)
|.|+|+.|+|||+||+.+++.. ...++.++.+..... ........+...+..
T Consensus 150 v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 229 (1249)
T 3sfz_A 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRV 229 (1249)
T ss_dssp EEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHH
Confidence 3589999999999999987752 223445554331100 000111222222222
Q ss_pred HHhc--CCcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhhHHHHhccceEEEEc
Q psy4538 53 ASVH--QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIP 130 (343)
Q Consensus 53 ~~~~--~p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~~~l~~rf~~~i~~~ 130 (343)
.... ++.+|+||+++... . +..+ .....||.||+....... .......+.++
T Consensus 230 ~l~~~~~~~LlvlDd~~~~~-----------------~---~~~~----~~~~~ilvTtR~~~~~~~--~~~~~~~~~~~ 283 (1249)
T 3sfz_A 230 LMLRKHPRSLLILDDVWDPW-----------------V---LKAF----DNQCQILLTTRDKSVTDS--VMGPKHVVPVE 283 (1249)
T ss_dssp HTSSSSCSCEEEEESCCCHH-----------------H---HTTT----CSSCEEEEEESSTTTTTT--CCSCBCCEECC
T ss_pred HHhccCCCEEEEEecCCCHH-----------------H---HHhh----cCCCEEEEEcCCHHHHHh--hcCCceEEEec
Confidence 2222 37899999998531 1 1112 122346667765432210 01122456777
Q ss_pred C-CCHHHHHHHHHHHHhhhCCCCChhhHHHHHHHCCCCCHHHHHHHH
Q psy4538 131 L-PDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLC 176 (343)
Q Consensus 131 ~-P~~~er~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~ 176 (343)
. .+.++-.+++........... ++....+++.+.|+ |-.|+.+.
T Consensus 284 ~~l~~~~a~~l~~~~~~~~~~~~-~~~~~~i~~~~~gl-PLal~~~~ 328 (1249)
T 3sfz_A 284 SGLGREKGLEILSLFVNMKKEDL-PAEAHSIIKECKGS-PLVVSLIG 328 (1249)
T ss_dssp SSCCHHHHHHHHHHHHTSCSTTC-CTHHHHHHHHTTTC-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhCCChhhC-cHHHHHHHHHhCCC-HHHHHHHH
Confidence 5 888888899987765433222 33678899999876 44454443
No 223
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.31 E-value=0.0004 Score=56.10 Aligned_cols=17 Identities=35% Similarity=0.731 Sum_probs=15.3
Q ss_pred CEEeCCCCchHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKC 17 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~ 17 (343)
+.|.||+|+||||+++.
T Consensus 12 ~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 46899999999999994
No 224
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.31 E-value=0.00013 Score=62.26 Aligned_cols=28 Identities=29% Similarity=0.495 Sum_probs=25.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~ 28 (343)
|+|.|+||+||||+++.+++.++.+++.
T Consensus 19 I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 19 AVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 5789999999999999999999977654
No 225
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.30 E-value=0.00013 Score=60.56 Aligned_cols=27 Identities=33% Similarity=0.553 Sum_probs=23.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~ 27 (343)
+.|.||+|+||||+++.++..+|..++
T Consensus 32 i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 32 VVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 468999999999999999999976544
No 226
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.30 E-value=0.00011 Score=61.81 Aligned_cols=29 Identities=21% Similarity=0.464 Sum_probs=25.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI 29 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v 29 (343)
|+|.|+||+||||+++.+++.+|.+++..
T Consensus 8 I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 47899999999999999999999876643
No 227
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.30 E-value=9.7e-05 Score=63.49 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=25.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI 29 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v 29 (343)
|+|.||||+||||+++.+++.+|.+++..
T Consensus 32 I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 32 YIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 47899999999999999999998776543
No 228
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.29 E-value=0.00029 Score=58.55 Aligned_cols=72 Identities=21% Similarity=0.160 Sum_probs=51.8
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHHhhhceEeccCCCCCC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQK 303 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allRR~d~~i~~~~P~~~~ 303 (343)
.++||++||++.+++.|++.... . .+|..|+-.... + +-+|.+|+.++.||.++.+|++.++++..|....
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~--~----rll~~l~~~r~~-~--~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~~~ 157 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKI--P----ENVQWLNTHRHQ-G--IDIFVLTQGPKLLDQNLRTLVRKHYHIASNKMGM 157 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCC--C----HHHHGGGGTTTT-T--CEEEEEESCGGGBCHHHHTTEEEEEEEEECSSCC
T ss_pred CceEEEEEChhhhccCccccchh--H----HHHHHHHhcCcC-C--eEEEEECCCHHHHhHHHHHHhheEEEEcCcccCc
Confidence 38999999999999887533211 1 355555543321 2 5678888889999999666999999998876554
Q ss_pred C
Q psy4538 304 V 304 (343)
Q Consensus 304 r 304 (343)
+
T Consensus 158 ~ 158 (199)
T 2r2a_A 158 R 158 (199)
T ss_dssp E
T ss_pred c
Confidence 3
No 229
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.28 E-value=0.00013 Score=61.43 Aligned_cols=33 Identities=24% Similarity=0.432 Sum_probs=26.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLT 35 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~ 35 (343)
|+|.||||+||+|.|+.+++.+|.+. ++..++.
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~g~~h--IstGdll 64 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLL 64 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHH
Confidence 46889999999999999999998765 4554443
No 230
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.28 E-value=0.00029 Score=63.09 Aligned_cols=21 Identities=29% Similarity=0.241 Sum_probs=19.1
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
++|+||||+|||+++..+|..
T Consensus 101 ~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 101 TEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999875
No 231
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.27 E-value=0.00018 Score=59.09 Aligned_cols=30 Identities=23% Similarity=0.092 Sum_probs=26.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCIS 30 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~ 30 (343)
|.|.|++||||||+++.+++.+ |.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4689999999999999999988 88887664
No 232
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.27 E-value=0.00013 Score=61.19 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=25.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI 29 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v 29 (343)
|+|.|+||+||||+++.+++.+|.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 47899999999999999999999877644
No 233
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.26 E-value=0.0029 Score=60.01 Aligned_cols=75 Identities=15% Similarity=0.269 Sum_probs=47.6
Q ss_pred Cc-EEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCc--hhhHHHHhccceEEEEcCCCH
Q psy4538 58 PS-IIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ--ELDEAARRRLVKRLYIPLPDE 134 (343)
Q Consensus 58 p~-vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~--~l~~~l~~rf~~~i~~~~P~~ 134 (343)
|. +++|||+..++... .......+..+...-. ...+.+|.+|.++. .++..++..+...|.+...+.
T Consensus 297 P~ivlvIDE~~~ll~~~----~~~~~~~l~~Lar~gR------a~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~ 366 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV----GKKVEELIARLAQKAR------AAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSK 366 (512)
T ss_dssp CEEEEEEETHHHHHHHH----HHHHHHHHHHHHHHCG------GGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSH
T ss_pred CcEEEEEeCHHHHHhhh----hHHHHHHHHHHHHHhh------hCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCH
Confidence 54 88999998775311 0111122222222111 22466777777766 688888889998999999999
Q ss_pred HHHHHHHH
Q psy4538 135 QARCEIVT 142 (343)
Q Consensus 135 ~er~~il~ 142 (343)
.+.+.++.
T Consensus 367 ~dsr~ilg 374 (512)
T 2ius_A 367 IDSRTILD 374 (512)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 88877764
No 234
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.24 E-value=0.00017 Score=61.10 Aligned_cols=28 Identities=36% Similarity=0.616 Sum_probs=24.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~ 28 (343)
|+|.|+||+||||+++.+++.+|.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 4789999999999999999999876543
No 235
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.23 E-value=0.00032 Score=60.93 Aligned_cols=67 Identities=24% Similarity=0.371 Sum_probs=39.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC----CcEEEEec--cccc-------c-cccchHHHHHHHHHHHHHhcCCcEEEeccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK----ATFFCISA--STLT-------S-KWYGEGEKMVRALFAVASVHQPSIIFIDEI 66 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~----~~~~~v~~--~~l~-------~-~~~~~~~~~l~~~~~~~~~~~p~vl~iDei 66 (343)
++|.||+|+||||+++.++..+. ..++.... .... . ...+.....++..+..+....|.++++||.
T Consensus 28 v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illlDEp 107 (261)
T 2eyu_A 28 ILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVGEM 107 (261)
T ss_dssp EEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEESCC
T ss_pred EEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEeCCC
Confidence 47899999999999999998652 22222110 0000 0 000101112345555665578999999998
Q ss_pred c
Q psy4538 67 D 67 (343)
Q Consensus 67 d 67 (343)
-
T Consensus 108 ~ 108 (261)
T 2eyu_A 108 R 108 (261)
T ss_dssp C
T ss_pred C
Confidence 4
No 236
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.23 E-value=0.0002 Score=58.83 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=20.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
|+|+||+|+|||+|++.+.++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 57999999999999999988764
No 237
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.23 E-value=0.00018 Score=60.85 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=24.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~ 27 (343)
|.|.||+||||||+++.+++.+|.+++
T Consensus 8 i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 8 ITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 368999999999999999999997665
No 238
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.22 E-value=0.00012 Score=61.94 Aligned_cols=27 Identities=15% Similarity=0.393 Sum_probs=24.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~ 27 (343)
|+|.||||+||||+++.+++.++..++
T Consensus 8 I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 8 VMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 478999999999999999999997654
No 239
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.22 E-value=0.00058 Score=57.62 Aligned_cols=64 Identities=22% Similarity=0.229 Sum_probs=49.6
Q ss_pred cCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHHhhhceEeccCCCCC
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQ 302 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allRR~d~~i~~~~P~~~ 302 (343)
..|++||+||+|.+-. ...+.|+..|+.... + +.+|++||+++.+++++.+|+ ..++++.|+.+
T Consensus 125 ~~~~vlviDe~~~l~~-----------~~~~~l~~~l~~~~~--~--~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~ 188 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSR-----------HSFNALLKTLEEPPE--H--VKFLLATTDPQKLPVTILSRC-LQFHLKALDVE 188 (250)
T ss_dssp SSSEEEEEETGGGSCH-----------HHHHHHHHHHHSCCT--T--EEEEEEESCGGGSCHHHHTTS-EEEECCCCCHH
T ss_pred CCceEEEEECcccccH-----------HHHHHHHHHHhcCCC--c--eEEEEEeCChHhCCHHHHHHh-hhccCCCCCHH
Confidence 4689999999998732 246677777775432 3 899999999999999999996 67888877654
No 240
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.21 E-value=0.00018 Score=59.63 Aligned_cols=27 Identities=30% Similarity=0.545 Sum_probs=24.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~ 27 (343)
|.|.|++|+||||+++.+++.++..++
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 468999999999999999999998665
No 241
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.20 E-value=0.00025 Score=57.63 Aligned_cols=32 Identities=19% Similarity=0.362 Sum_probs=27.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISAS 32 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~ 32 (343)
+.|.|++|+||||+++.++..+ |.+++.++..
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 4689999999999999999988 8888877643
No 242
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.17 E-value=0.00026 Score=58.29 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=25.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCIS 30 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~ 30 (343)
|.|.|++||||||+++.+++.+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 4689999999999999999998 88887554
No 243
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.16 E-value=0.00015 Score=60.29 Aligned_cols=28 Identities=25% Similarity=0.243 Sum_probs=24.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI 29 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v 29 (343)
|.|.|++||||||+++.+++ +|.+++..
T Consensus 4 i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 46899999999999999999 88776544
No 244
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.15 E-value=0.00034 Score=65.97 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
++|.|+||||||+++.+++..+
T Consensus 48 ~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 48 VTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 4799999999999999998876
No 245
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.15 E-value=0.00012 Score=60.01 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=21.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
|+|.|+||+||||+++.+++.++
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999886
No 246
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.14 E-value=0.0025 Score=55.68 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=19.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
++|+||+|+|||++++.++..+
T Consensus 33 ~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 33 GALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 4789999999999999998644
No 247
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.14 E-value=0.0044 Score=54.91 Aligned_cols=31 Identities=29% Similarity=0.307 Sum_probs=24.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISA 31 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~ 31 (343)
+++.||+|+||||++..+|..+ +..+..+++
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 4689999999999999999866 455555554
No 248
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.14 E-value=0.00025 Score=60.37 Aligned_cols=27 Identities=30% Similarity=0.572 Sum_probs=24.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~ 27 (343)
+.|.||+|+||||+++.+++.+|.+++
T Consensus 12 i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 12 VAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 468899999999999999999997764
No 249
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.12 E-value=0.00025 Score=58.84 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=25.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISAS 32 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~ 32 (343)
+.|.||+|+||||+++.++..+ |...+.++..
T Consensus 28 i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 28 IWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence 4689999999999999999988 5544455543
No 250
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.12 E-value=0.0002 Score=59.22 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=24.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~ 28 (343)
|.|+|++||||||+++.+++.+|.+++.
T Consensus 15 IgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 4689999999999999999998987754
No 251
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.12 E-value=0.00026 Score=58.71 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=25.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-CCcEEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-KATFFCIS 30 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-~~~~~~v~ 30 (343)
|.|.|++|+||||+++.+++.+ |.+++.+.
T Consensus 7 I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4689999999999999999998 57777654
No 252
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.11 E-value=0.00028 Score=58.59 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=25.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI 29 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v 29 (343)
|.|.|++|+||||+++.+++.+|.+++..
T Consensus 5 i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 5 VTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 46899999999999999999999887643
No 253
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.0003 Score=62.70 Aligned_cols=66 Identities=14% Similarity=0.223 Sum_probs=48.7
Q ss_pred cCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHH----HHhhh-ceEecc
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAA----RRRLV-KRLYIP 297 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~al----lRR~d-~~i~~~ 297 (343)
..++|+|+||+|.+. .+.++-.|+.|.+- .+.++++|+++|.++..+..+ ..||. ..|.|+
T Consensus 131 ~~~~ii~lDE~d~l~----------~q~~L~~l~~~~~~----~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~ 196 (318)
T 3te6_A 131 KRKTLILIQNPENLL----------SEKILQYFEKWISS----KNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLN 196 (318)
T ss_dssp SCEEEEEEECCSSSC----------CTHHHHHHHHHHHC----SSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECC
T ss_pred CCceEEEEecHHHhh----------cchHHHHHHhcccc----cCCcEEEEEEecCcccchhhcchhhhccCCceEEEeC
Confidence 468999999999998 13567777777542 233489999999998755444 44997 678888
Q ss_pred CCCCC
Q psy4538 298 LPDEQ 302 (343)
Q Consensus 298 ~P~~~ 302 (343)
..+.+
T Consensus 197 pYt~~ 201 (318)
T 3te6_A 197 KVDKN 201 (318)
T ss_dssp CCCHH
T ss_pred CCCHH
Confidence 77764
No 254
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.10 E-value=0.00052 Score=58.66 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=27.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISAS 32 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~ 32 (343)
++++||+|+|||.++..++..++.+.+.+.+.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 47899999999999999999887777776654
No 255
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.07 E-value=0.00027 Score=60.67 Aligned_cols=27 Identities=26% Similarity=0.597 Sum_probs=23.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~ 27 (343)
+.|.||+|+||||+++.+++.+|...+
T Consensus 30 i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 30 AVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 468999999999999999999987644
No 256
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.07 E-value=0.0003 Score=60.62 Aligned_cols=29 Identities=41% Similarity=0.579 Sum_probs=25.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI 29 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v 29 (343)
|.|.|++|+||||+++.++..+|.+++..
T Consensus 51 i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 51 MYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 46899999999999999999999887653
No 257
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.07 E-value=0.00022 Score=66.93 Aligned_cols=62 Identities=24% Similarity=0.357 Sum_probs=40.7
Q ss_pred cCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeec--CCcccccHHHHHhhhceEeccCCC
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGAT--NRPQELDEAARRRLVKRLYIPLPD 300 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aT--N~~~~lD~allRR~d~~i~~~~P~ 300 (343)
..++||||||+|.+-.. ..+.||..|+.- . |++|+|| |....+++++++|+. ++.|+.|+
T Consensus 105 ~~~~iLfIDEI~~l~~~-----------~q~~LL~~le~~----~--v~lI~att~n~~~~l~~aL~sR~~-v~~l~~l~ 166 (447)
T 3pvs_A 105 GRRTILFVDEVHRFNKS-----------QQDAFLPHIEDG----T--ITFIGATTENPSFELNSALLSRAR-VYLLKSLS 166 (447)
T ss_dssp TCCEEEEEETTTCC-----------------CCHHHHHTT----S--CEEEEEESSCGGGSSCHHHHTTEE-EEECCCCC
T ss_pred CCCcEEEEeChhhhCHH-----------HHHHHHHHHhcC----c--eEEEecCCCCcccccCHHHhCcee-EEeeCCcC
Confidence 35789999999988533 234567777651 2 5666666 555689999999997 55566666
Q ss_pred CC
Q psy4538 301 EQ 302 (343)
Q Consensus 301 ~~ 302 (343)
.+
T Consensus 167 ~e 168 (447)
T 3pvs_A 167 TE 168 (447)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 258
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.07 E-value=0.0012 Score=62.19 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=25.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----CCcEEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----KATFFCISA 31 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----~~~~~~v~~ 31 (343)
++|.|+||+|||+++..+|..+ |.++++++.
T Consensus 206 iiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 206 IIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 4789999999999999987754 557777664
No 259
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.06 E-value=0.00028 Score=58.77 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=23.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~ 28 (343)
+.|.||+||||||+++.++. +|.+++.
T Consensus 5 i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 36899999999999999988 8877653
No 260
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.01 E-value=0.00041 Score=59.90 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=24.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~ 27 (343)
|.|.||+|+||||+++.+++.+|..++
T Consensus 30 I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 30 ITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 358999999999999999999998765
No 261
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.97 E-value=0.00034 Score=62.65 Aligned_cols=67 Identities=13% Similarity=0.229 Sum_probs=42.5
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcc---cccHHHHHhhh--ceEeccC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ---ELDEAARRRLV--KRLYIPL 298 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~---~lD~allRR~d--~~i~~~~ 298 (343)
.++||||||+|.+.+++. ....+-.++..+ .. .+.+++++++|.|. .+++++.+||+ ..+.++.
T Consensus 98 ~~~vL~iDEi~~l~~~~~------~~~~l~~~l~~~---~~--~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~ 166 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKER------TQIEFFHIFNTL---YL--LEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL 166 (324)
T ss_dssp TCSEEEEECGGGGTTCHH------HHHHHHHHHHHH---HH--TTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC
T ss_pred CCCEEEEcCcccccCChH------HHHHHHHHHHHH---HH--CCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC
Confidence 378999999999886531 112222222222 11 11267778888887 68999999998 5666665
Q ss_pred CCCC
Q psy4538 299 PDEQ 302 (343)
Q Consensus 299 P~~~ 302 (343)
+.+
T Consensus 167 -~~~ 169 (324)
T 1l8q_A 167 -DNK 169 (324)
T ss_dssp -CHH
T ss_pred -CHH
Confidence 543
No 262
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.97 E-value=0.00034 Score=58.22 Aligned_cols=25 Identities=20% Similarity=0.217 Sum_probs=22.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT 25 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~ 25 (343)
|+|.|+||+||||+++.+++.++..
T Consensus 7 I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 4789999999999999999998763
No 263
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.95 E-value=0.00061 Score=58.72 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=29.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc--------EEEEecccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT--------FFCISASTLTS 36 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~--------~~~v~~~~l~~ 36 (343)
|.|.|++||||||+++.+++.+|.+ +..++..++..
T Consensus 25 I~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 25 IGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 4689999999999999999999876 34567666654
No 264
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.94 E-value=0.001 Score=60.54 Aligned_cols=69 Identities=19% Similarity=0.279 Sum_probs=52.6
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCc---ccccHHHHHhhh-ceEeccCC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRP---QELDEAARRRLV-KRLYIPLP 299 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~---~~lD~allRR~d-~~i~~~~P 299 (343)
.|+|||+||+|.+...++ ...+..|+..++... +..+.+|++||.+ +.+++.+.+||. ..++++.+
T Consensus 128 ~~~vlilDE~~~l~~~~~-------~~~l~~l~~~~~~~~---~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l 197 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYN-------DDILYKLSRINSEVN---KSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPY 197 (386)
T ss_dssp SCEEEEEETHHHHHHSSC-------STHHHHHHHHHHSCC---C--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCC
T ss_pred CeEEEEEcChhhhhccCc-------CHHHHHHhhchhhcC---CCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCC
Confidence 389999999999986542 236778888887653 2348999999988 568999999986 48999888
Q ss_pred CCC
Q psy4538 300 DEQ 302 (343)
Q Consensus 300 ~~~ 302 (343)
+.+
T Consensus 198 ~~~ 200 (386)
T 2qby_A 198 NAE 200 (386)
T ss_dssp CHH
T ss_pred CHH
Confidence 764
No 265
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.94 E-value=0.00043 Score=61.15 Aligned_cols=34 Identities=21% Similarity=0.436 Sum_probs=28.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTL 34 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l 34 (343)
++|.||+|+|||+++..+|+.++..++..+.-.+
T Consensus 13 i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred EEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 4689999999999999999999988777665544
No 266
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.92 E-value=0.00032 Score=62.82 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=28.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISAST 33 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~ 33 (343)
|+|.||+|+|||+|+..+|+.++..++..+.-.
T Consensus 43 IvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 43 LVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp EEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 478999999999999999999998887766543
No 267
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.92 E-value=0.0004 Score=65.05 Aligned_cols=69 Identities=19% Similarity=0.346 Sum_probs=45.4
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCccc---ccHHHHHhhh--ceEeccC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQE---LDEAARRRLV--KRLYIPL 298 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~---lD~allRR~d--~~i~~~~ 298 (343)
.|+|||+||+|.+.+++ ...+ .|+..|+.... .+..++|+++|.|.. +++++++||+ ..+.++.
T Consensus 194 ~~~vL~IDEi~~l~~~~-----~~q~----~l~~~l~~l~~--~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~ 262 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKT-----GVQT----ELFHTFNELHD--SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEP 262 (440)
T ss_dssp TCSEEEEECGGGGSSCH-----HHHH----HHHHHHHHHHT--TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCC
T ss_pred CCCEEEEeCcccccCCh-----HHHH----HHHHHHHHHHH--CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCC
Confidence 78999999999998653 1122 22222222211 112466666665665 8999999997 8899999
Q ss_pred CCCCC
Q psy4538 299 PDEQK 303 (343)
Q Consensus 299 P~~~~ 303 (343)
|+.++
T Consensus 263 p~~e~ 267 (440)
T 2z4s_A 263 PDEET 267 (440)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 98764
No 268
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.91 E-value=0.0041 Score=52.95 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=23.8
Q ss_pred CEEeCCCCchHHHHHHHHHHH----cCCcEEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ----CKATFFCISA 31 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~----l~~~~~~v~~ 31 (343)
++++|+||+|||+++..+|.. .+.+++.++.
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 479999999999999887643 2566766654
No 269
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.90 E-value=0.00016 Score=60.45 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=23.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~ 27 (343)
|.|.|++||||||+++.+++.++.+.+
T Consensus 13 I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 13 IVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 478999999999999999998865433
No 270
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.89 E-value=0.0027 Score=58.91 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=23.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~ 27 (343)
|+|+|+||+||||+++.+++.++..++
T Consensus 261 Iil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred EEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 578999999999999999999876554
No 271
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.89 E-value=0.0006 Score=61.29 Aligned_cols=68 Identities=18% Similarity=0.242 Sum_probs=43.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC--cEEEEecccc-c-----cc--ccchHHHHHHHHHHHHHhcCCcEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA--TFFCISASTL-T-----SK--WYGEGEKMVRALFAVASVHQPSIIFIDEIDS 68 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~--~~~~v~~~~l-~-----~~--~~~~~~~~l~~~~~~~~~~~p~vl~iDeid~ 68 (343)
+++.||+|+||||++++++..+.. ..+.+..... . .. +........+..+..+...+|.+|++||.-.
T Consensus 174 v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 174 VIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp EEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 468999999999999999998742 2333432211 0 00 1100122345556666678899999999764
No 272
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.88 E-value=0.00051 Score=56.79 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=23.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~ 28 (343)
|.|.|++||||||+++.+++. |.+++.
T Consensus 11 I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp EEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 468999999999999999998 877653
No 273
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.88 E-value=0.00074 Score=61.75 Aligned_cols=67 Identities=24% Similarity=0.377 Sum_probs=39.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC----CcEEEEecc-cc--------ccc-ccchHHHHHHHHHHHHHhcCCcEEEeccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK----ATFFCISAS-TL--------TSK-WYGEGEKMVRALFAVASVHQPSIIFIDEI 66 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~----~~~~~v~~~-~l--------~~~-~~~~~~~~l~~~~~~~~~~~p~vl~iDei 66 (343)
++|.||+|+||||++++++..+. ..++.+... +. ... ..+.....+...+..+....|.+|++||+
T Consensus 139 i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~illdE~ 218 (372)
T 2ewv_A 139 ILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVGEM 218 (372)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEEESCC
T ss_pred EEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEEECCC
Confidence 47899999999999999998653 233222211 00 000 00001112234455555578999999998
Q ss_pred c
Q psy4538 67 D 67 (343)
Q Consensus 67 d 67 (343)
-
T Consensus 219 ~ 219 (372)
T 2ewv_A 219 R 219 (372)
T ss_dssp C
T ss_pred C
Confidence 4
No 274
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.87 E-value=0.002 Score=60.40 Aligned_cols=31 Identities=19% Similarity=0.175 Sum_probs=25.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----CCcEEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----KATFFCISA 31 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----~~~~~~v~~ 31 (343)
++|.|+||+|||+++..+|... |.++++++.
T Consensus 203 ~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 203 NIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 4789999999999999987653 557777765
No 275
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.86 E-value=0.0023 Score=59.49 Aligned_cols=200 Identities=14% Similarity=0.080 Sum_probs=99.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccccccc--------------------ccchHHHHHHHHHHHHHhcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSK--------------------WYGEGEKMVRALFAVASVHQ 57 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~--------------------~~~~~~~~l~~~~~~~~~~~ 57 (343)
+++.|++|+||||++..+|..+ |..+..+++...... ........+...+..+....
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~~ 182 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKG 182 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHTT
T ss_pred EEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhCC
Confidence 4789999999999999998766 566666665432110 01123334455666666666
Q ss_pred CcEEEecccccccccCCCCchhHHHHHHHHHHHhhccCCCCCCCcEEEEEecCCCchhh--HHHHhccce-EEEEcCCCH
Q psy4538 58 PSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELD--EAARRRLVK-RLYIPLPDE 134 (343)
Q Consensus 58 p~vl~iDeid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vi~~tn~~~~l~--~~l~~rf~~-~i~~~~P~~ 134 (343)
+.+++||....+. .. ......+..+..... +...++|+-++...+.+. ..+...... -+-+..-+.
T Consensus 183 ~DvVIIDTaGrl~-----~d-~~lm~el~~i~~~~~-----pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 183 VDIIIVDTAGRHK-----ED-KALIEEMKQISNVIH-----PHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDG 251 (443)
T ss_dssp CSEEEEECCCCSS-----CC-HHHHHHHHHHHHHHC-----CSEEEEEEEGGGGGGHHHHHHHHHHSCTTEEEEEECCSS
T ss_pred CCEEEEECCCccc-----ch-HHHHHHHHHHHHhhc-----CceEEEEEeCCCchhHHHHHHHHHhhCCCeEEEEECCCC
Confidence 8899999775331 11 111111222222221 122334443433222222 223323332 244555444
Q ss_pred HHHHHHHHHHHhhhCC------------CCChhhHHHHHHHCCCCCHHHHHHHHHHHhccccccc-ccccccccCCcccC
Q psy4538 135 QARCEIVTKLLRNITN------------SLTVDDIEEVGRMTTDFSGADMASLCREASLGPVRSI-DLSRIDALDVRPIS 201 (343)
Q Consensus 135 ~er~~il~~~l~~~~~------------~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~-~~~~~~~~~~~~i~ 201 (343)
..+...........+. .+.....+.++...-| .+|+..+++.+........ ...-.........+
T Consensus 252 ~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg--~gd~~~l~e~~~~~~~~~~~~~~~~~k~~~~~f~ 329 (443)
T 3dm5_A 252 SAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLG--LGDIQGLLEKFKELEKEVEIKEEDIERFLRGKFT 329 (443)
T ss_dssp CSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTT--TTCHHHHHHHHHHHHTTHHHHHHHHHHHHTTCCC
T ss_pred cccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcC--CCcHHHHHHHHHHhhhhhHHHHHHHHHHhhCCcC
Confidence 4333322222222111 1122245677777654 5788888877743321110 00011111234588
Q ss_pred hhHHHHHHHhcC
Q psy4538 202 IDDFRDALKTVR 213 (343)
Q Consensus 202 ~~d~~~a~~~~~ 213 (343)
.+||.+.++.++
T Consensus 330 l~d~~~q~~~~~ 341 (443)
T 3dm5_A 330 LKDMYAQLEAMR 341 (443)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988877765
No 276
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.86 E-value=0.00034 Score=66.09 Aligned_cols=57 Identities=28% Similarity=0.325 Sum_probs=39.2
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcc-----cccHHHHHhhhceEeccC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ-----ELDEAARRRLVKRLYIPL 298 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~-----~lD~allRR~d~~i~~~~ 298 (343)
.|+|||+| + .....+.|+..|+. ..+.+|+|||.++ .+|+++.|||. .|+|+.
T Consensus 267 ~~~iLfiD---------~------~~~a~~~L~~~L~~------g~v~vI~at~~~e~~~~~~~~~al~~Rf~-~i~v~~ 324 (468)
T 3pxg_A 267 GNIILFID---------A------AIDASNILKPSLAR------GELQCIGATTLDEYRKYIEKDAALERRFQ-PIQVDQ 324 (468)
T ss_dssp CCCEEEEC---------C--------------CCCTTS------SSCEEEEECCTTTTHHHHTTCSHHHHSEE-EEECCC
T ss_pred CCeEEEEe---------C------chhHHHHHHHhhcC------CCEEEEecCCHHHHHHHhhcCHHHHHhCc-cceeCC
Confidence 58899999 1 01133445555542 2389999999998 68999999998 499999
Q ss_pred CCCC
Q psy4538 299 PDEQ 302 (343)
Q Consensus 299 P~~~ 302 (343)
|+.+
T Consensus 325 p~~e 328 (468)
T 3pxg_A 325 PSVD 328 (468)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 9765
No 277
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.86 E-value=0.00095 Score=61.01 Aligned_cols=69 Identities=13% Similarity=0.127 Sum_probs=51.7
Q ss_pred cCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCc---ccccHHHHHhhhc-eEeccC
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRP---QELDEAARRRLVK-RLYIPL 298 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~---~~lD~allRR~d~-~i~~~~ 298 (343)
..|+|||+||+|.+ ....+..|+..++.........+.+|++||.+ +.+++.+.+||.. .++|+.
T Consensus 124 ~~~~vlilDE~~~l-----------~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~p 192 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-----------APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSP 192 (389)
T ss_dssp TCCEEEEEETGGGS-----------CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCC
T ss_pred CCeEEEEEECcccc-----------chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCC
Confidence 35899999999998 12467777778776542001238999999999 7789999999986 888887
Q ss_pred CCCC
Q psy4538 299 PDEQ 302 (343)
Q Consensus 299 P~~~ 302 (343)
++.+
T Consensus 193 l~~~ 196 (389)
T 1fnn_A 193 YTKD 196 (389)
T ss_dssp CBHH
T ss_pred CCHH
Confidence 7654
No 278
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.84 E-value=0.00066 Score=57.01 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=23.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI 29 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v 29 (343)
|.|.|++|+||||+++.++. +|.+++..
T Consensus 7 I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 7 VALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 46899999999999999998 88766543
No 279
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.84 E-value=0.00052 Score=61.57 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=26.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISAS 32 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~ 32 (343)
|+|.||+|+|||++++.+|..++..++..+.-
T Consensus 10 I~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 10 IVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred EEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 46899999999999999999998666555443
No 280
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.84 E-value=0.00055 Score=60.59 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=28.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLT 35 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~l~ 35 (343)
|+|.||+|+|||+++..+|+.++..++..+.-.+.
T Consensus 6 i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvY 40 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVY 40 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGB
T ss_pred EEEECCCcCCHHHHHHHHHHhCccceeecCcccce
Confidence 46899999999999999999998777666554443
No 281
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.82 E-value=0.011 Score=60.41 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=18.6
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
+.|+|+.|+|||+||+.+++.
T Consensus 153 V~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 153 VLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp EEECCSTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCccHHHHHHHHHHh
Confidence 468999999999999999864
No 282
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.81 E-value=0.00054 Score=57.00 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=21.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
++|.||||+||||+++.++..++
T Consensus 15 i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp EEEECCTTSCHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCc
Confidence 47899999999999999999885
No 283
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.80 E-value=0.00078 Score=56.52 Aligned_cols=28 Identities=36% Similarity=0.492 Sum_probs=25.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~ 28 (343)
|.|.|++|+|||++++.+++.+|.+++.
T Consensus 6 i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 6 IALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 4689999999999999999999987654
No 284
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.80 E-value=0.0016 Score=59.38 Aligned_cols=62 Identities=23% Similarity=0.303 Sum_probs=48.0
Q ss_pred ceEeecchhhhhcccCCCcchhHHHH-HHHHHHhhcCCCCCCCCcEEEEeecCCc---ccccHHHHHhhhceEeccCCCC
Q psy4538 226 SIIFIDEIDSLLCQRSDQENETSRRL-KTEFLISLDGASTLDDDLVLVIGATNRP---QELDEAARRRLVKRLYIPLPDE 301 (343)
Q Consensus 226 ~ilf~DEiDsl~~~R~~~~~~~~~r~-v~~lL~~mdg~~~~~~~~v~vi~aTN~~---~~lD~allRR~d~~i~~~~P~~ 301 (343)
+||||||+|.+...++ ... +..|+.++ .+ +.+|++||.+ +.+++++.+||...++|+.|+.
T Consensus 135 ~vlilDEi~~l~~~~~-------~~~~l~~l~~~~------~~--~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~ 199 (384)
T 2qby_B 135 AIIYLDEVDTLVKRRG-------GDIVLYQLLRSD------AN--ISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDA 199 (384)
T ss_dssp EEEEEETTHHHHHSTT-------SHHHHHHHHTSS------SC--EEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCH
T ss_pred CEEEEECHHHhccCCC-------CceeHHHHhcCC------cc--eEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCH
Confidence 4999999999976542 123 55565554 13 8999999998 7899999999988999998876
Q ss_pred C
Q psy4538 302 Q 302 (343)
Q Consensus 302 ~ 302 (343)
+
T Consensus 200 ~ 200 (384)
T 2qby_B 200 E 200 (384)
T ss_dssp H
T ss_pred H
Confidence 4
No 285
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.79 E-value=0.011 Score=52.52 Aligned_cols=31 Identities=23% Similarity=0.186 Sum_probs=24.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISA 31 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~ 31 (343)
++|.|+||+|||+++..+|... +.++++++.
T Consensus 71 ~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 4799999999999999998654 456666664
No 286
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.78 E-value=0.00081 Score=55.03 Aligned_cols=30 Identities=33% Similarity=0.485 Sum_probs=23.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISA 31 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~ 31 (343)
+.|.||+|+||||+++.++...+.. +.++.
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~~g~-~~i~~ 34 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQLDNS-AYIEG 34 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSSE-EEEEH
T ss_pred EEEECCCCCcHHHHHHHHhcccCCe-EEEcc
Confidence 3689999999999999999866542 33443
No 287
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.78 E-value=0.0033 Score=56.48 Aligned_cols=84 Identities=18% Similarity=0.277 Sum_probs=61.3
Q ss_pred ccChhHHHHHHHhcCCCccccccccCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCC
Q psy4538 199 PISIDDFRDALKTVRPSVCQADFVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNR 278 (343)
Q Consensus 199 ~i~~~d~~~a~~~~~ps~~~k~~~~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~ 278 (343)
.+..+++++..+.+.-. .+.....|+++||+|.+-. ...+.||.-|+.-. ..+++|.+||.
T Consensus 87 ~~~i~~ir~l~~~~~~~----~~~~~~kvviIdead~l~~-----------~a~naLLk~lEep~----~~~~~Il~t~~ 147 (334)
T 1a5t_A 87 TLGVDAVREVTEKLNEH----ARLGGAKVVWVTDAALLTD-----------AAANALLKTLEEPP----AETWFFLATRE 147 (334)
T ss_dssp SBCHHHHHHHHHHTTSC----CTTSSCEEEEESCGGGBCH-----------HHHHHHHHHHTSCC----TTEEEEEEESC
T ss_pred CCCHHHHHHHHHHHhhc----cccCCcEEEEECchhhcCH-----------HHHHHHHHHhcCCC----CCeEEEEEeCC
Confidence 45667777766655322 1234678999999998742 24678888888643 23788899999
Q ss_pred cccccHHHHHhhhceEeccCCCCC
Q psy4538 279 PQELDEAARRRLVKRLYIPLPDEQ 302 (343)
Q Consensus 279 ~~~lD~allRR~d~~i~~~~P~~~ 302 (343)
|+.|.|.+.+|.. .+.|+.|+.+
T Consensus 148 ~~~l~~ti~SRc~-~~~~~~~~~~ 170 (334)
T 1a5t_A 148 PERLLATLRSRCR-LHYLAPPPEQ 170 (334)
T ss_dssp GGGSCHHHHTTSE-EEECCCCCHH
T ss_pred hHhCcHHHhhcce-eeeCCCCCHH
Confidence 9999999999884 6888877764
No 288
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.78 E-value=0.00023 Score=59.44 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA 24 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~ 24 (343)
|+|.|++|+||||+++.+++.++.
T Consensus 12 I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 12 IVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999998753
No 289
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.77 E-value=0.00063 Score=55.40 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=20.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
+.|.||+|+||||+++.++....
T Consensus 8 i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999764
No 290
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.76 E-value=0.00072 Score=57.24 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=44.1
Q ss_pred cCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcE-EEEeecCCcc---cccHHHHHhhh--ceEec
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLV-LVIGATNRPQ---ELDEAARRRLV--KRLYI 296 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v-~vi~aTN~~~---~lD~allRR~d--~~i~~ 296 (343)
..+.+||+||+|.+.... .+ ...|+..|+....... + +++++++.++ .+++++.+||. ..+++
T Consensus 103 ~~~~vliiDe~~~~~~~~-----~~----~~~l~~~l~~~~~~~~--~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l 171 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHP-----LW----EEAIFDLYNRVAEQKR--GSLIVSASASPMEAGFVLPDLVSRMHWGLTYQL 171 (242)
T ss_dssp GGSSEEEEETGGGGTTCH-----HH----HHHHHHHHHHHHHHCS--CEEEEEESSCTTTTTCCCHHHHHHHHHSEEEEC
T ss_pred cCCCEEEEeccccccCCH-----HH----HHHHHHHHHHHHHcCC--CeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEe
Confidence 568999999999986432 11 2233333333222111 3 5555555554 56799999997 89999
Q ss_pred cCCCCCC
Q psy4538 297 PLPDEQK 303 (343)
Q Consensus 297 ~~P~~~~ 303 (343)
+.|+.++
T Consensus 172 ~~~~~~~ 178 (242)
T 3bos_A 172 QPMMDDE 178 (242)
T ss_dssp CCCCGGG
T ss_pred CCCCHHH
Confidence 9998764
No 291
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.76 E-value=0.00081 Score=57.30 Aligned_cols=28 Identities=29% Similarity=0.494 Sum_probs=24.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~ 28 (343)
|.|.|++|+||||+++.++..+|.+++.
T Consensus 19 i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 19 IAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 4689999999999999999999987653
No 292
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.74 E-value=0.00085 Score=54.80 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=24.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC---CcEEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK---ATFFCISA 31 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~---~~~~~v~~ 31 (343)
++|.|++|+||||+++.++..++ .++..++.
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 46899999999999999999874 44544543
No 293
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.71 E-value=0.0019 Score=58.15 Aligned_cols=62 Identities=15% Similarity=0.121 Sum_probs=46.5
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHHhhhceEeccCCCC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDE 301 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allRR~d~~i~~~~P~~ 301 (343)
.+.|||+||+|.+.+. ..+.|+..|+.... . +.+|.+||.++.+++++.+|+. .+.|+.|+.
T Consensus 133 ~~~vliiDE~~~l~~~-----------~~~~Ll~~le~~~~--~--~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~ 194 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD-----------AQSALRRTMETYSG--V--TRFCLICNYVTRIIDPLASQCS-KFRFKALDA 194 (353)
T ss_dssp SCEEEEETTGGGSCHH-----------HHHHHHHHHHHTTT--T--EEEEEEESCGGGSCHHHHHHSE-EEECCCCCH
T ss_pred CceEEEEECCCccCHH-----------HHHHHHHHHHhcCC--C--ceEEEEeCchhhCcchhhccCc-eEEeCCCCH
Confidence 5679999999998643 23556666665443 2 5677789999999999999997 677776665
No 294
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.70 E-value=0.0015 Score=57.85 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=49.9
Q ss_pred cCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHHhhhceEeccCCCCC
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQ 302 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allRR~d~~i~~~~P~~~ 302 (343)
..+.|+|+||+|.+.. ...+.|+..|+.... + +.+|++||.++.+++++.+|+. .+.|+.|+.+
T Consensus 101 ~~~~vliiDe~~~l~~-----------~~~~~L~~~le~~~~--~--~~~i~~~~~~~~l~~~l~sr~~-~i~~~~~~~~ 164 (319)
T 2chq_A 101 APFKIIFLDEADALTA-----------DAQAALRRTMEMYSK--S--CRFILSCNYVSRIIEPIQSRCA-VFRFKPVPKE 164 (319)
T ss_dssp CCCEEEEEETGGGSCH-----------HHHHTTGGGTSSSSS--S--EEEEEEESCGGGSCHHHHTTCE-EEECCCCCHH
T ss_pred CCceEEEEeCCCcCCH-----------HHHHHHHHHHHhcCC--C--CeEEEEeCChhhcchHHHhhCe-EEEecCCCHH
Confidence 3589999999999753 235567777776443 3 7889999999999999999997 7888877753
No 295
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.70 E-value=0.00088 Score=55.69 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=25.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~ 28 (343)
|.|.|++|||||++++.+|+.+|.+++.
T Consensus 9 I~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 9 IAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 4588999999999999999999999873
No 296
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.70 E-value=0.0011 Score=58.79 Aligned_cols=69 Identities=20% Similarity=0.264 Sum_probs=46.3
Q ss_pred cceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCC--C-----CCCcEEEEeecCCc-------ccccHHHHHhh
Q psy4538 225 PSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAST--L-----DDDLVLVIGATNRP-------QELDEAARRRL 290 (343)
Q Consensus 225 p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~--~-----~~~~v~vi~aTN~~-------~~lD~allRR~ 290 (343)
+++||+||||.+-.. +...||..|+...- . ....|.+|+|||++ ..++++|..||
T Consensus 97 ~g~L~LDEi~~l~~~-----------~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl 165 (304)
T 1ojl_A 97 GGTLFLDEIGDISPL-----------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRL 165 (304)
T ss_dssp TSEEEEESCTTCCHH-----------HHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHH
T ss_pred CCEEEEeccccCCHH-----------HHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhc
Confidence 578999999998542 34556666664320 0 01127899999986 24677888899
Q ss_pred hceEeccCCCCCCCC
Q psy4538 291 VKRLYIPLPDEQKVP 305 (343)
Q Consensus 291 d~~i~~~~P~~~~r~ 305 (343)
. .+.+.+|.-.+|+
T Consensus 166 ~-~~~i~lPpL~eR~ 179 (304)
T 1ojl_A 166 N-VVAIEMPSLRQRR 179 (304)
T ss_dssp S-SEEEECCCSGGGG
T ss_pred C-eeEEeccCHHHhH
Confidence 7 6667777776654
No 297
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.67 E-value=0.00029 Score=63.46 Aligned_cols=28 Identities=25% Similarity=0.595 Sum_probs=25.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~ 28 (343)
++|+|++|+|||++++.+|..++.+|+.
T Consensus 27 i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 4789999999999999999999888754
No 298
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.67 E-value=0.00072 Score=56.45 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA 24 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~ 24 (343)
+.|.||+|+||||+++.++..+..
T Consensus 11 i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHSTTC
T ss_pred EEEECcCCCCHHHHHHHHHhhCCC
Confidence 468999999999999999998753
No 299
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.67 E-value=0.0005 Score=57.24 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=22.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-CCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-KATFF 27 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-~~~~~ 27 (343)
+.|.|++|+||||+++.++..+ +..++
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 4689999999999999999987 55443
No 300
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.66 E-value=0.00082 Score=59.38 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=22.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-CCcEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-KATFF 27 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-~~~~~ 27 (343)
|+|.|+||+||||+++.+++.+ +..++
T Consensus 5 I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 5789999999999999999974 54433
No 301
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.61 E-value=0.0042 Score=60.59 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=18.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+++.|+||||||+++..+...+
T Consensus 167 ~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 167 SVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp EEEECCTTSTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 4789999999999988876544
No 302
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.61 E-value=0.00092 Score=55.31 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
+.|.||+|+||||+++.++..+.
T Consensus 10 i~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999864
No 303
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.61 E-value=0.00096 Score=58.54 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=23.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~ 28 (343)
|.|.|++||||||+++.++ .+|.+++.
T Consensus 78 I~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp EEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 4689999999999999999 67876643
No 304
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.58 E-value=0.00083 Score=55.64 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=20.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+.|.||+|+||||+++.++..+
T Consensus 9 i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 9 IVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999987
No 305
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.58 E-value=0.0027 Score=56.43 Aligned_cols=63 Identities=21% Similarity=0.216 Sum_probs=47.6
Q ss_pred cCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHHhhhceEeccCCCC
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDE 301 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allRR~d~~i~~~~P~~ 301 (343)
..++|+|+||+|.+... ..+.|+..|+.... + +.+|++||.++.+++++.+|+. .+.|+.|+.
T Consensus 109 ~~~~vliiDe~~~l~~~-----------~~~~L~~~le~~~~--~--~~~i~~~~~~~~l~~~l~sr~~-~~~~~~l~~ 171 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-----------AQQALRRTMEMFSS--N--VRFILSCNYSSKIIEPIQSRCA-IFRFRPLRD 171 (327)
T ss_dssp CSCEEEEEETGGGSCHH-----------HHHHHHHHHHHTTT--T--EEEEEEESCGGGSCHHHHHTEE-EEECCCCCH
T ss_pred CCCeEEEEeCCCcCCHH-----------HHHHHHHHHHhcCC--C--CeEEEEeCCccccCHHHHhhCc-EEEecCCCH
Confidence 46889999999988432 35566666665432 3 7888899999999999999987 677776664
No 306
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.55 E-value=0.0056 Score=58.46 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=24.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC---CcEEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK---ATFFCISAS 32 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~---~~~~~v~~~ 32 (343)
|+++|.||+||||+++.+++.++ .....++..
T Consensus 38 IvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D 72 (520)
T 2axn_A 38 IVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVG 72 (520)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCCeEEeccc
Confidence 57899999999999999999884 344444443
No 307
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.53 E-value=0.0013 Score=55.01 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=26.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC----CcEEEEeccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK----ATFFCISAST 33 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~----~~~~~v~~~~ 33 (343)
++|.|++|+||||+++.++..++ .+++.++...
T Consensus 28 i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 28 IWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 46899999999999999999774 4566666433
No 308
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.51 E-value=0.0012 Score=54.09 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=20.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
+.|.||+|+||||+++.++..+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999998874
No 309
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.50 E-value=0.0016 Score=55.12 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=24.2
Q ss_pred EEeCCCCchHHHHHHHHHHHcCCcEEE
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCKATFFC 28 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~~~~~~ 28 (343)
-|.||||+||||+++.+++.+|.+++.
T Consensus 12 ~~~G~pGsGKsT~a~~L~~~~g~~~is 38 (230)
T 3gmt_A 12 ILLGAPGAGKGTQANFIKEKFGIPQIS 38 (230)
T ss_dssp EEECCTTSCHHHHHHHHHHHHTCCEEC
T ss_pred eeECCCCCCHHHHHHHHHHHhCCCeee
Confidence 478999999999999999999987653
No 310
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.49 E-value=0.001 Score=55.43 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=21.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
+.|.||+|+||||+++.++..++
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999887
No 311
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.45 E-value=0.0015 Score=53.15 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=27.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEeccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISAST 33 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~~ 33 (343)
++++|++|+|||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 589999999999999999988 87887777654
No 312
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.44 E-value=0.0022 Score=53.14 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=25.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISAS 32 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~ 32 (343)
+.|.|++|+||||+++.++..+ +.+++..+..
T Consensus 25 i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 4689999999999999999876 5566555443
No 313
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.42 E-value=0.0011 Score=55.27 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=20.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
+.|.||+|+||||+++.++..+.
T Consensus 25 v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 25 VALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999875
No 314
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.37 E-value=0.0016 Score=53.75 Aligned_cols=23 Identities=26% Similarity=0.560 Sum_probs=20.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
+.|.||+|+|||+|++.++....
T Consensus 22 ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 22 LVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECcCCCCHHHHHHHHHhhCC
Confidence 46899999999999999998875
No 315
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.37 E-value=0.0052 Score=54.24 Aligned_cols=32 Identities=34% Similarity=0.454 Sum_probs=24.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----CCcEEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----KATFFCISAS 32 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----~~~~~~v~~~ 32 (343)
++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 108 i~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 4689999999999999998755 5566666553
No 316
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.35 E-value=0.0015 Score=53.97 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
+.|.||+|+||||+++.++..+.
T Consensus 7 i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHhhCc
Confidence 36899999999999999998764
No 317
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.35 E-value=0.0017 Score=51.67 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+.|.||.|+||||+++.++..+
T Consensus 36 v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 36 VYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 3689999999999999999987
No 318
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.35 E-value=0.019 Score=53.66 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=25.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISAS 32 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~ 32 (343)
++|.|+||+|||+++..+|... |.+++.++..
T Consensus 200 iiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 200 VLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 4789999999999999887755 6677777653
No 319
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.34 E-value=0.019 Score=51.46 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=25.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISA 31 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~ 31 (343)
++|.|+||+|||+++..+|..+ |.++.+++.
T Consensus 49 iiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 49 VIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 4789999999999999998764 667766654
No 320
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.33 E-value=0.0013 Score=54.22 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=24.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISA 31 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~ 31 (343)
++|.||+|+|||++|..+++..+ .++..+.
T Consensus 37 ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 37 VLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp EEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred EEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 57999999999999999998876 5554443
No 321
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.32 E-value=0.01 Score=49.10 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=18.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+++.+|+|+|||.++-..+...
T Consensus 51 ~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 51 IIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp EEEECSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 4789999999999888776653
No 322
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.31 E-value=0.00074 Score=56.32 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA 24 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~ 24 (343)
|.|.|++|+||||+++.+++.++.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999998853
No 323
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.30 E-value=0.0017 Score=59.48 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=26.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISA 31 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~ 31 (343)
|+|.||+|+|||+++..+|..++..++..+.
T Consensus 5 i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred EEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 4689999999999999999999877665544
No 324
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.30 E-value=0.0045 Score=55.83 Aligned_cols=66 Identities=14% Similarity=0.230 Sum_probs=47.4
Q ss_pred cccCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHHhhhceEeccCCC
Q psy4538 221 FVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPD 300 (343)
Q Consensus 221 ~~~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allRR~d~~i~~~~P~ 300 (343)
+...|.|+++||+|++-. ...+.|+..|+.... + +.+|.+||.++.+.+++.+|+ ..+.|+.|+
T Consensus 131 l~~~~~vlilDE~~~L~~-----------~~~~~L~~~le~~~~--~--~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~ 194 (354)
T 1sxj_E 131 LAHRYKCVIINEANSLTK-----------DAQAALRRTMEKYSK--N--IRLIMVCDSMSPIIAPIKSQC-LLIRCPAPS 194 (354)
T ss_dssp ---CCEEEEEECTTSSCH-----------HHHHHHHHHHHHSTT--T--EEEEEEESCSCSSCHHHHTTS-EEEECCCCC
T ss_pred cCCCCeEEEEeCccccCH-----------HHHHHHHHHHHhhcC--C--CEEEEEeCCHHHHHHHHHhhc-eEEecCCcC
Confidence 456789999999999521 124455555554432 3 688889999999999988899 788888887
Q ss_pred CC
Q psy4538 301 EQ 302 (343)
Q Consensus 301 ~~ 302 (343)
.+
T Consensus 195 ~~ 196 (354)
T 1sxj_E 195 DS 196 (354)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 325
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.28 E-value=0.013 Score=49.56 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=15.4
Q ss_pred CEEeCCCCchHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVA 19 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la 19 (343)
+++.||+|||||+++....
T Consensus 79 ~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 79 VIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCcHHhHHHHH
Confidence 4789999999998766554
No 326
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.27 E-value=0.016 Score=55.42 Aligned_cols=71 Identities=24% Similarity=0.278 Sum_probs=45.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecccccc----------------------c----cc--chHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTS----------------------K----WY--GEGEKMVRAL 49 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~----------------------~----~~--~~~~~~l~~~ 49 (343)
++|.||+|+|||++++.++... |.+.+.+...+-.. . .. -...+..+.+
T Consensus 284 ~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~q~~~ 363 (525)
T 1tf7_A 284 ILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQII 363 (525)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHHHHHHH
Confidence 4789999999999999998765 34444444322100 0 00 0233445566
Q ss_pred HHHHHhcCCcEEEecccccccc
Q psy4538 50 FAVASVHQPSIIFIDEIDSLLC 71 (343)
Q Consensus 50 ~~~~~~~~p~vl~iDeid~l~~ 71 (343)
+..+...+|.+|+||=+..+..
T Consensus 364 ~a~~l~~~p~llilDp~~~Ld~ 385 (525)
T 1tf7_A 364 KSEINDFKPARIAIDSLSALAR 385 (525)
T ss_dssp HHHHHTTCCSEEEEECHHHHTS
T ss_pred HHHHHhhCCCEEEEcChHHHHh
Confidence 6666678899999996665543
No 327
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.26 E-value=0.0073 Score=54.73 Aligned_cols=64 Identities=22% Similarity=0.229 Sum_probs=49.5
Q ss_pred cCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHHhhhceEeccCCCCC
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQ 302 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allRR~d~~i~~~~P~~~ 302 (343)
..+.|+||||+|.+-. ...+.|+..|+.... + +++|++||.++.+++++.+|+ ..+.|+.|+.+
T Consensus 118 ~~~~vliiDe~~~l~~-----------~~~~~Ll~~le~~~~--~--~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~ 181 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSR-----------HSFNALLKTLEEPPE--H--VKFLLATTDPQKLPVTILSRC-LQFHLKALDVE 181 (373)
T ss_dssp SSSEEEEEECGGGSCH-----------HHHHHHHHHHHSCCS--S--EEEEEEESCGGGSCHHHHTTS-EEEECCCCCHH
T ss_pred CCeEEEEEECcchhcH-----------HHHHHHHHHHhcCCC--c--eEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHH
Confidence 4578999999998742 246677777776432 3 788999999999999998898 67888877754
No 328
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.25 E-value=0.0021 Score=54.25 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=25.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~ 28 (343)
|.|.|++|||||++++.+|+.+|.+++.
T Consensus 17 I~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 17 ITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 3588999999999999999999999864
No 329
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.25 E-value=0.023 Score=53.98 Aligned_cols=32 Identities=13% Similarity=-0.046 Sum_probs=25.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----CCcEEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----KATFFCISAS 32 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----~~~~~~v~~~ 32 (343)
++|.|+||+|||+++..+|... |.+++.++..
T Consensus 245 ~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 245 IMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred EEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 4789999999999999998765 4567777653
No 330
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.22 E-value=0.0026 Score=61.76 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=29.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEeccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISAST 33 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~ 33 (343)
|+|.|++|+||||+++.+++.+ |.+++.++...
T Consensus 55 IvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 55 VWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 4789999999999999999999 99998886543
No 331
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.22 E-value=0.0021 Score=53.44 Aligned_cols=22 Identities=27% Similarity=0.653 Sum_probs=20.3
Q ss_pred EEeCCCCchHHHHHHHHHHHcC
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~ 23 (343)
.|.||+|+||||+++.++..+.
T Consensus 24 ~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 24 VLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp EEECSTTSSHHHHHHHHHHHST
T ss_pred EEECCCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999875
No 332
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.21 E-value=0.019 Score=58.39 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=17.8
Q ss_pred CEEeCCCCchHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAA 20 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~ 20 (343)
++|.||.|+||||+.+.++.
T Consensus 676 ~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 676 MIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EEEESCCCHHHHHHHHHHHH
T ss_pred EEEECCCCCchHHHHHHHHH
Confidence 36899999999999999874
No 333
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.21 E-value=0.0022 Score=54.04 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
+.|.||+|+|||||++.++....
T Consensus 19 i~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 19 YIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhccCC
Confidence 36899999999999999999875
No 334
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.19 E-value=0.004 Score=53.81 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=44.7
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCC-------CCCCCcEEEEeecCCc-------ccccHHHHHh
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAS-------TLDDDLVLVIGATNRP-------QELDEAARRR 289 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~-------~~~~~~v~vi~aTN~~-------~~lD~allRR 289 (343)
.+++|||||+|.+-.. +...|+..|+.-. ......+.+|+|||.+ ..++++|..|
T Consensus 100 ~~~~l~lDEi~~l~~~-----------~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~R 168 (265)
T 2bjv_A 100 DGGTLFLDELATAPMM-----------VQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDA 168 (265)
T ss_dssp TTSEEEEESGGGSCHH-----------HHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHH
T ss_pred CCcEEEEechHhcCHH-----------HHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHh
Confidence 3579999999988532 3445565555311 0001127899999985 2478999999
Q ss_pred hhceEeccCCCCCCC
Q psy4538 290 LVKRLYIPLPDEQKV 304 (343)
Q Consensus 290 ~d~~i~~~~P~~~~r 304 (343)
|+. +.+.+|+-.+|
T Consensus 169 l~~-~~i~lp~L~~R 182 (265)
T 2bjv_A 169 LAF-DVVQLPPLRER 182 (265)
T ss_dssp HCS-EEEECCCGGGC
T ss_pred hcC-cEEeCCChhhh
Confidence 974 56666766655
No 335
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.18 E-value=0.0084 Score=53.12 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=58.9
Q ss_pred ccChhHHHHHHHhcCCCccccccccCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCC
Q psy4538 199 PISIDDFRDALKTVRPSVCQADFVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNR 278 (343)
Q Consensus 199 ~i~~~d~~~a~~~~~ps~~~k~~~~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~ 278 (343)
.+..+++++.+..+.-. .+.....|+|+||+|.+-. ...|.||.-|+.... . +++|.+||.
T Consensus 61 ~~~id~ir~li~~~~~~----p~~~~~kvviIdead~lt~-----------~a~naLLk~LEep~~--~--t~fIl~t~~ 121 (305)
T 2gno_A 61 NIGIDDIRTIKDFLNYS----PELYTRKYVIVHDCERMTQ-----------QAANAFLKALEEPPE--Y--AVIVLNTRR 121 (305)
T ss_dssp CBCHHHHHHHHHHHTSC----CSSSSSEEEEETTGGGBCH-----------HHHHHTHHHHHSCCT--T--EEEEEEESC
T ss_pred CCCHHHHHHHHHHHhhc----cccCCceEEEeccHHHhCH-----------HHHHHHHHHHhCCCC--C--eEEEEEECC
Confidence 35666677766654321 1123467999999999842 246779988886543 2 688888899
Q ss_pred cccccHHHHHhhhceEeccCCCCC
Q psy4538 279 PQELDEAARRRLVKRLYIPLPDEQ 302 (343)
Q Consensus 279 ~~~lD~allRR~d~~i~~~~P~~~ 302 (343)
|+.|-|++..| .+.|+.|+.+
T Consensus 122 ~~kl~~tI~SR---~~~f~~l~~~ 142 (305)
T 2gno_A 122 WHYLLPTIKSR---VFRVVVNVPK 142 (305)
T ss_dssp GGGSCHHHHTT---SEEEECCCCH
T ss_pred hHhChHHHHce---eEeCCCCCHH
Confidence 99999999989 8888887765
No 336
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.18 E-value=0.011 Score=55.28 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=19.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
++|+||+|+|||+|++.++...
T Consensus 154 ~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 154 IGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCccHHHHHHHhhh
Confidence 3689999999999999887654
No 337
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.16 E-value=0.0044 Score=50.86 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=24.4
Q ss_pred EEeCCCCchHH-HHHHHHHHHc--CCcEEEEecc
Q psy4538 2 LLFGPPGTGKT-LIGKCVAAQC--KATFFCISAS 32 (343)
Q Consensus 2 Ll~Gp~GtGKT-~la~~la~~l--~~~~~~v~~~ 32 (343)
++|||.|+||| .|.+++.+.. +..++.+.+.
T Consensus 24 fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 24 VILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 68999999999 8888886643 6777777644
No 338
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.16 E-value=0.0024 Score=53.71 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+.|.||+|+||||+++.++...
T Consensus 26 ~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 26 LVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999977
No 339
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.14 E-value=0.012 Score=52.70 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=19.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+.|.||+|+||||+++.+|..+
T Consensus 132 i~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999876
No 340
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.12 E-value=0.0024 Score=54.63 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=21.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKAT 25 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~ 25 (343)
+-|.||+|+||||+++.++..+|..
T Consensus 28 igI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 28 IGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhchh
Confidence 3588999999999999999988754
No 341
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.11 E-value=0.0045 Score=54.87 Aligned_cols=63 Identities=16% Similarity=0.174 Sum_probs=47.2
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHHhhhceEeccCCCCC
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQ 302 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allRR~d~~i~~~~P~~~ 302 (343)
.++|+++||+|.+... ..+.|+..|+.... + +.+|++||.++.+++++.+|+. .+.|+.|+.+
T Consensus 107 ~~~viiiDe~~~l~~~-----------~~~~L~~~le~~~~--~--~~~il~~~~~~~l~~~l~sr~~-~i~~~~~~~~ 169 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-----------AQQALRRTMELYSN--S--TRFAFACNQSNKIIEPLQSQCA-ILRYSKLSDE 169 (323)
T ss_dssp CCEEEEEESGGGSCHH-----------HHHTTHHHHHHTTT--T--EEEEEEESCGGGSCHHHHTTSE-EEECCCCCHH
T ss_pred CceEEEEECcccCCHH-----------HHHHHHHHHhccCC--C--ceEEEEeCChhhchhHHHhhce-EEeecCCCHH
Confidence 4899999999988532 24445555554332 2 7888899999999999999987 7888887764
No 342
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.09 E-value=0.0031 Score=60.08 Aligned_cols=67 Identities=22% Similarity=0.393 Sum_probs=40.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC--cEEEEeccc-cccc---c--------cchHHHHHHHHHHHHHhcCCcEEEeccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA--TFFCISAST-LTSK---W--------YGEGEKMVRALFAVASVHQPSIIFIDEI 66 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~--~~~~v~~~~-l~~~---~--------~~~~~~~l~~~~~~~~~~~p~vl~iDei 66 (343)
++|.||+|+||||++++++..+.. ..+.+.... +... + .+.....+...+..+....|.++++.|+
T Consensus 263 i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivgEi 342 (511)
T 2oap_1 263 AIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVGEV 342 (511)
T ss_dssp EEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEESCC
T ss_pred EEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeCCc
Confidence 479999999999999999988742 344443221 1100 0 0000112333444555578999999987
Q ss_pred c
Q psy4538 67 D 67 (343)
Q Consensus 67 d 67 (343)
-
T Consensus 343 r 343 (511)
T 2oap_1 343 R 343 (511)
T ss_dssp C
T ss_pred C
Confidence 4
No 343
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.07 E-value=0.0027 Score=53.84 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=21.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
|.|.||+|+||||+++.+++.++
T Consensus 29 i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHh
Confidence 46889999999999999999986
No 344
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.06 E-value=0.0017 Score=57.19 Aligned_cols=35 Identities=14% Similarity=0.290 Sum_probs=24.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC---CcEEEEeccccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK---ATFFCISASTLT 35 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~---~~~~~v~~~~l~ 35 (343)
|.|.||+|+||||+++.+++.++ ..+..++..++.
T Consensus 8 IgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 8 ISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 46899999999999999999776 445556665554
No 345
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.05 E-value=0.076 Score=49.97 Aligned_cols=22 Identities=41% Similarity=0.439 Sum_probs=19.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+.|.||+|+||||+++.++..+
T Consensus 296 I~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 296 ILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCcccHHHHHHHHHHHh
Confidence 4689999999999999999876
No 346
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.92 E-value=0.012 Score=51.99 Aligned_cols=32 Identities=31% Similarity=0.283 Sum_probs=25.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISAS 32 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~ 32 (343)
+.+.|++|+||||++..+|..+ |..+..+++.
T Consensus 101 i~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 101 IMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp EEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 3578999999999999998766 5666666654
No 347
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.92 E-value=0.016 Score=54.90 Aligned_cols=31 Identities=29% Similarity=0.260 Sum_probs=25.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISA 31 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~ 31 (343)
|++.|++|+||||++..+|..+ |..+..+++
T Consensus 104 I~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 104 IMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4688999999999999999765 666666665
No 348
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.91 E-value=0.0057 Score=60.15 Aligned_cols=30 Identities=33% Similarity=0.609 Sum_probs=20.1
Q ss_pred EEeCCCCchHHHHHHHHHHHc---CCcEEEEec
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC---KATFFCISA 31 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l---~~~~~~v~~ 31 (343)
||.||||||||+++-.+..++ +.+++.+..
T Consensus 209 lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 209 IIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 799999999997555444333 555555544
No 349
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.89 E-value=0.02 Score=50.36 Aligned_cols=66 Identities=23% Similarity=0.280 Sum_probs=39.8
Q ss_pred EEeCCCCchHHHHHHHHHHHc---CCcEEEEeccccccc----------------c---cc-hHHHHHHHHHHHHHhcCC
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC---KATFFCISASTLTSK----------------W---YG-EGEKMVRALFAVASVHQP 58 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l---~~~~~~v~~~~l~~~----------------~---~~-~~~~~l~~~~~~~~~~~p 58 (343)
.+.|++|+||||++..+|..+ +..+..+++...... . .+ ......+..+..+....+
T Consensus 102 ~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~~~~ 181 (295)
T 1ls1_A 102 FLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEAR 181 (295)
T ss_dssp EEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHHTC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHhCCC
Confidence 577999999999999998865 455555544211100 0 00 111222444555544678
Q ss_pred cEEEecccc
Q psy4538 59 SIIFIDEID 67 (343)
Q Consensus 59 ~vl~iDeid 67 (343)
.+++||+--
T Consensus 182 D~viiDtpp 190 (295)
T 1ls1_A 182 DLILVDTAG 190 (295)
T ss_dssp CEEEEECCC
T ss_pred CEEEEeCCC
Confidence 899999864
No 350
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.89 E-value=0.0056 Score=59.67 Aligned_cols=24 Identities=42% Similarity=0.851 Sum_probs=22.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA 24 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~ 24 (343)
++|+||||||||+++++++..++.
T Consensus 63 vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 63 VLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp EEEECCTTSSHHHHHHHHHHTSCC
T ss_pred EEEEeCCCCCHHHHHHHHhccCCc
Confidence 589999999999999999998864
No 351
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.89 E-value=0.036 Score=56.47 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=17.5
Q ss_pred CEEeCCCCchHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAA 20 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~ 20 (343)
++|.||.|+||||+.|.++.
T Consensus 665 ~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 665 HIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999843
No 352
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.86 E-value=0.0065 Score=47.37 Aligned_cols=59 Identities=7% Similarity=0.047 Sum_probs=38.3
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCc-------ccccHHHHHhhhc-eEe
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRP-------QELDEAARRRLVK-RLY 295 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~-------~~lD~allRR~d~-~i~ 295 (343)
.+++|||||+|.+-.. +-..|+..|..... + +.+|+|||++ ..+++.|..||.. .|+
T Consensus 76 ~~g~l~ldei~~l~~~-----------~q~~Ll~~l~~~~~--~--~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~~i~ 140 (145)
T 3n70_A 76 QGGTLVLSHPEHLTRE-----------QQYHLVQLQSQEHR--P--FRLIGIGDTSLVELAASNHIIAELYYCFAMTQIA 140 (145)
T ss_dssp TTSCEEEECGGGSCHH-----------HHHHHHHHHHSSSC--S--SCEEEEESSCHHHHHHHSCCCHHHHHHHHHHEEE
T ss_pred CCcEEEEcChHHCCHH-----------HHHHHHHHHhhcCC--C--EEEEEECCcCHHHHHHcCCCCHHHHHHhcCCEEe
Confidence 4579999999988532 34456666644332 2 6788999975 2467777777753 344
Q ss_pred cc
Q psy4538 296 IP 297 (343)
Q Consensus 296 ~~ 297 (343)
+|
T Consensus 141 lP 142 (145)
T 3n70_A 141 CL 142 (145)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 353
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.81 E-value=0.021 Score=57.26 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=17.1
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
+++.||+|+|||+++..++..
T Consensus 112 vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 112 MVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 478999999999977776544
No 354
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.78 E-value=0.04 Score=52.67 Aligned_cols=18 Identities=44% Similarity=0.591 Sum_probs=16.3
Q ss_pred CEEeCCCCchHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCV 18 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~l 18 (343)
++|.||+|+|||||++.+
T Consensus 42 ~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 468999999999999994
No 355
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.77 E-value=0.025 Score=50.40 Aligned_cols=31 Identities=29% Similarity=0.265 Sum_probs=24.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISA 31 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~ 31 (343)
+++.|++|+||||++..+|..+ +..++.+++
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4688999999999999998865 555665554
No 356
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.75 E-value=0.0026 Score=53.82 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=13.6
Q ss_pred CEEeCCCCchHHHHHHHHH-HHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVA-AQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la-~~l~ 23 (343)
+.|.||+|+||||+++.++ ..+.
T Consensus 30 i~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp EEEECSCC----CHHHHHHC----
T ss_pred EEEECCCCCCHHHHHHHHHhcCCC
Confidence 3589999999999999999 7753
No 357
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.71 E-value=0.022 Score=51.61 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=23.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCIS 30 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~ 30 (343)
|.|.|+||+|||+++..++..+ |..+..++
T Consensus 82 I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 82 VGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 4689999999999999998875 54444443
No 358
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.69 E-value=0.0045 Score=55.06 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
+.|.||+|+||||+++.++..+.
T Consensus 93 vgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHhhcc
Confidence 35899999999999999999773
No 359
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.64 E-value=0.0047 Score=54.61 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=20.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
+.|+||+|+|||||++.++..+.
T Consensus 129 vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 129 LAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHhhhcC
Confidence 36899999999999999999873
No 360
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.63 E-value=0.0054 Score=49.25 Aligned_cols=30 Identities=17% Similarity=0.037 Sum_probs=23.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCIS 30 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~ 30 (343)
+.|.|++|+||||++..++..+ |..+..+.
T Consensus 7 i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 7 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 3689999999999999998876 44444444
No 361
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.63 E-value=0.069 Score=43.73 Aligned_cols=21 Identities=33% Similarity=0.311 Sum_probs=15.2
Q ss_pred CEEeCCCCchHHHHH-HHHHHH
Q psy4538 1 ILLFGPPGTGKTLIG-KCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la-~~la~~ 21 (343)
+++.+|+|+|||..+ ..+...
T Consensus 41 ~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 41 LIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHHHH
Confidence 478999999999863 334444
No 362
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.61 E-value=0.0057 Score=50.96 Aligned_cols=29 Identities=34% Similarity=0.344 Sum_probs=24.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEe
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCIS 30 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~ 30 (343)
|-|+|..||||||+++.+++ +|.+++..+
T Consensus 12 iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 12 IGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp EEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 35899999999999999988 898876443
No 363
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.61 E-value=0.0053 Score=54.72 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
+.|.||+||||||+++.++..++
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 35889999999999999999875
No 364
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.60 E-value=0.0053 Score=54.03 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
|.|.||+|+||||+++.++..++
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 45899999999999999999875
No 365
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.58 E-value=0.0062 Score=58.85 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=27.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC----CcEEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK----ATFFCISAS 32 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~----~~~~~v~~~ 32 (343)
|+|.|++|+||||+++.+++.++ .+++.++..
T Consensus 399 I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 399 IFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred EEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 47899999999999999999986 677777643
No 366
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.57 E-value=0.0058 Score=49.40 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=19.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+.|.|++|+||||+++.++..+
T Consensus 9 i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 9 LAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998865
No 367
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.56 E-value=0.027 Score=52.35 Aligned_cols=67 Identities=19% Similarity=0.232 Sum_probs=41.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHc----CCcEEEEeccccccccc--------------------chHHHHHHHHHHHHHhc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC----KATFFCISASTLTSKWY--------------------GEGEKMVRALFAVASVH 56 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l----~~~~~~v~~~~l~~~~~--------------------~~~~~~l~~~~~~~~~~ 56 (343)
|++.|++|+||||++-.+|..+ |..+..+++........ ......+...+..+...
T Consensus 103 I~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~~ 182 (433)
T 2xxa_A 103 VLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLK 182 (433)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 4678999999999999988655 67777777654221100 01122234445555545
Q ss_pred CCcEEEecccc
Q psy4538 57 QPSIIFIDEID 67 (343)
Q Consensus 57 ~p~vl~iDeid 67 (343)
...+++||-..
T Consensus 183 ~~D~VIIDTpG 193 (433)
T 2xxa_A 183 FYDVLLVDTAG 193 (433)
T ss_dssp TCSEEEEECCC
T ss_pred CCCEEEEECCC
Confidence 67799998643
No 368
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.54 E-value=0.0067 Score=49.05 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.7
Q ss_pred EEeCCCCchHHHHHHHHHHHcCC
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCKA 24 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~~ 24 (343)
+|+||+|+|||+++++++..++.
T Consensus 30 ~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 30 AIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEECTTSSHHHHHHHHHHHTTC
T ss_pred EEECCCCCCHHHHHHHHHHHHcC
Confidence 68999999999999999987753
No 369
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.53 E-value=0.035 Score=53.75 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=19.2
Q ss_pred EEeCCCCchHHHHHHHHHHHc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l 22 (343)
.+.||+|+||||+++.++..+
T Consensus 371 ~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 371 AFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEECSTTSSHHHHHTTTTTSS
T ss_pred EEECCCCChHHHHHHHHhcCC
Confidence 589999999999999998876
No 370
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.52 E-value=0.0056 Score=52.26 Aligned_cols=22 Identities=36% Similarity=0.697 Sum_probs=19.5
Q ss_pred EEeCCCCchHHHHHHHHHHHcC
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~ 23 (343)
.|.||+|+|||||++.++..+.
T Consensus 28 ~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 28 VLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEECCTTSSHHHHHHHHHTSSC
T ss_pred EEECCCCCCHHHHHHHHhCCCC
Confidence 5899999999999999997653
No 371
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.51 E-value=0.0046 Score=52.63 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=19.6
Q ss_pred EEeCCCCchHHHHHHHHHHHcC
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~ 23 (343)
.|.||+|+|||||++.++..+.
T Consensus 35 ~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 35 SIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEECSTTSSHHHHHHHHTTSSC
T ss_pred EEECCCCCcHHHHHHHHhcCCC
Confidence 5899999999999999997654
No 372
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.49 E-value=0.042 Score=53.38 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=19.3
Q ss_pred EEeCCCCchHHHHHHHHHHHc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l 22 (343)
.+.||+|+||||+++.++..+
T Consensus 385 ~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 385 ALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEECCTTSSTTHHHHHHTTSS
T ss_pred EEECCCCCcHHHHHHHHhcCc
Confidence 589999999999999999866
No 373
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.48 E-value=0.0052 Score=54.07 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
++|.||||+|||++++.++..+
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 4689999999999999998765
No 374
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.44 E-value=0.0063 Score=53.90 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+.|.||+|+||||+++.+|..+
T Consensus 105 i~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 3688999999999999999876
No 375
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.43 E-value=0.0046 Score=51.57 Aligned_cols=20 Identities=40% Similarity=0.674 Sum_probs=18.4
Q ss_pred EEeCCCCchHHHHHHHHHHH
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~ 21 (343)
.|.||+|+|||||++.++..
T Consensus 26 ~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 26 FGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEECCTTSSTTHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999975
No 376
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.41 E-value=0.0031 Score=54.52 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=21.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
|.|.|++|+||||+++.+++.++
T Consensus 27 I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 27 ISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999984
No 377
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.41 E-value=0.0061 Score=54.12 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
+.|.||+|+||||+++.++..++
T Consensus 83 igI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999875
No 378
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.40 E-value=0.0082 Score=51.08 Aligned_cols=23 Identities=17% Similarity=0.197 Sum_probs=21.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
|.|.|++|+||||+++.+++.++
T Consensus 5 i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999994
No 379
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.40 E-value=0.073 Score=44.26 Aligned_cols=30 Identities=13% Similarity=0.037 Sum_probs=23.5
Q ss_pred EEeCCCCchHHHHHHHHHHHc---CCcEEEEec
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC---KATFFCISA 31 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l---~~~~~~v~~ 31 (343)
+++||.|+|||+.+-..+..+ |..++.+.+
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 579999999999888877655 667776654
No 380
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.40 E-value=0.0047 Score=52.15 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.4
Q ss_pred EEeCCCCchHHHHHHHHHHHcC
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~ 23 (343)
.|.||+|+|||||++.++..+.
T Consensus 34 ~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 34 SIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEECTTSCHHHHHHHHTTSSC
T ss_pred EEECCCCCCHHHHHHHHhcCCC
Confidence 5889999999999999997653
No 381
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.39 E-value=0.012 Score=49.19 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=23.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC---CcEEEE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK---ATFFCI 29 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~---~~~~~v 29 (343)
|.|.|++|+||||+++.+++.++ .+++..
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 46889999999999999999874 455433
No 382
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.34 E-value=0.0077 Score=55.78 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=21.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
++|.||+|+||||++++++..++
T Consensus 170 i~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 170 ILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhcC
Confidence 47999999999999999999874
No 383
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.33 E-value=0.0073 Score=53.45 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=19.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+.|.||+|+||||+++.+|..+
T Consensus 103 i~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 103 IMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999876
No 384
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.32 E-value=0.006 Score=51.11 Aligned_cols=22 Identities=36% Similarity=0.532 Sum_probs=19.5
Q ss_pred EEeCCCCchHHHHHHHHHHHcC
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~ 23 (343)
.|.||+|+|||||++.++..+.
T Consensus 39 ~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 39 NFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EEECCTTSSHHHHHHHHTTSSC
T ss_pred EEECCCCCCHHHHHHHHhcCCC
Confidence 5899999999999999987654
No 385
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.32 E-value=0.0058 Score=52.05 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=18.8
Q ss_pred EEeCCCCchHHHHHHHHHHHc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l 22 (343)
.|.||+|+|||||++.++..+
T Consensus 35 ~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 35 AVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEECSTTSSHHHHHHHHTTCS
T ss_pred EEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999998654
No 386
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.27 E-value=0.0081 Score=49.28 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+.|.|++|+|||+|++.++...
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 4689999999999999999863
No 387
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.27 E-value=0.01 Score=47.58 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=20.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATF 26 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~ 26 (343)
+||.|++|+|||++|..+... |..+
T Consensus 19 vli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 19 VLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp EEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred EEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 589999999999999999874 4443
No 388
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.25 E-value=0.02 Score=49.68 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=18.8
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
|.|.|+||+|||++++++...
T Consensus 6 i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 6 VALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEECSSSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999864
No 389
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.24 E-value=0.0064 Score=52.63 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.6
Q ss_pred EEeCCCCchHHHHHHHHHHHcC
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~ 23 (343)
.|.||+|+|||||++.++..+.
T Consensus 36 ~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 36 SIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEECCTTSSHHHHHHHHTTSSC
T ss_pred EEECCCCCCHHHHHHHHhcCCC
Confidence 5889999999999999997654
No 390
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.24 E-value=0.054 Score=52.48 Aligned_cols=21 Identities=19% Similarity=0.407 Sum_probs=19.2
Q ss_pred EEeCCCCchHHHHHHHHHHHc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l 22 (343)
.+.||+|+||||+++.++..+
T Consensus 373 ~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 373 AVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEECSSSSSHHHHHHTTTTSS
T ss_pred EEECCCCCCHHHHHHHHhCCc
Confidence 589999999999999998876
No 391
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.22 E-value=0.0094 Score=54.20 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.5
Q ss_pred EEeCCCCchHHHHHHHHHHHcCCc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCKAT 25 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~~~ 25 (343)
.|.||+|+|||||++.++..+...
T Consensus 174 ~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 174 AILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEECCTTSHHHHHHHHHHHHTTCE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCC
Confidence 589999999999999999987654
No 392
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.21 E-value=0.01 Score=50.09 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=17.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
|.|.|++|+||||+++.+++.+
T Consensus 28 I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 28 ITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp EEEECCC---CHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999987
No 393
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.21 E-value=0.0066 Score=52.92 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.7
Q ss_pred EEeCCCCchHHHHHHHHHHHcC
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~ 23 (343)
.|.||+|+|||||++.++..+.
T Consensus 38 ~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 38 AILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEECCTTSSHHHHHHHHTTSSC
T ss_pred EEECCCCCCHHHHHHHHHcCCC
Confidence 5899999999999999998664
No 394
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.21 E-value=0.0077 Score=49.16 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+.|.|++|+|||+|++.++...
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 4689999999999999999864
No 395
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.20 E-value=0.0053 Score=49.51 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.2
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
+.|.|++|+||||+++.++..+.
T Consensus 5 v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 35899999999999999998763
No 396
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.18 E-value=0.01 Score=46.07 Aligned_cols=60 Identities=15% Similarity=0.229 Sum_probs=36.0
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCc-cc----ccHHHHHhhhc-eEecc
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRP-QE----LDEAARRRLVK-RLYIP 297 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~-~~----lD~allRR~d~-~i~~~ 297 (343)
.+++|||||+|.+-.. +...|+..|+.... ..+.+|+|||++ +. +++.|..||.. .|++|
T Consensus 75 ~~~~l~lDei~~l~~~-----------~q~~Ll~~l~~~~~---~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~i~lP 140 (143)
T 3co5_A 75 EGGVLYVGDIAQYSRN-----------IQTGITFIIGKAER---CRVRVIASCSYAAGSDGISCEEKLAGLFSESVVRIP 140 (143)
T ss_dssp TTSEEEEEECTTCCHH-----------HHHHHHHHHHHHTT---TTCEEEEEEEECTTTC--CHHHHHHHHSSSEEEEEC
T ss_pred CCCeEEEeChHHCCHH-----------HHHHHHHHHHhCCC---CCEEEEEecCCCHHHHHhCccHHHHHHhcCcEEeCC
Confidence 3578999999988532 23334444443221 227889999975 33 55566667644 45554
No 397
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.17 E-value=0.0082 Score=51.55 Aligned_cols=20 Identities=45% Similarity=0.866 Sum_probs=18.4
Q ss_pred EEeCCCCchHHHHHHHHHHH
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~ 21 (343)
.|.||+|+|||||++.++..
T Consensus 33 ~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 33 ALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEECSTTSSHHHHHHHHHTC
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999975
No 398
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.17 E-value=0.0075 Score=52.47 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
+.|.||+|+||||+++.++....
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999998763
No 399
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.17 E-value=0.0068 Score=52.29 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=19.7
Q ss_pred EEeCCCCchHHHHHHHHHHHcC
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~ 23 (343)
.|.||+|+|||||++.++..+.
T Consensus 37 ~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 37 LIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEECSTTSSHHHHHHHHTTSSC
T ss_pred EEECCCCCCHHHHHHHHhCCCC
Confidence 5899999999999999998664
No 400
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.16 E-value=0.013 Score=48.99 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=23.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATF 26 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~ 26 (343)
|.|.|++|+||||.++.+++.++...
T Consensus 8 i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 8 ILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred EEEECCCCCCHHHHHHHHHHHhcccc
Confidence 46889999999999999999998743
No 401
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.15 E-value=0.0086 Score=51.99 Aligned_cols=20 Identities=30% Similarity=0.718 Sum_probs=18.6
Q ss_pred EEeCCCCchHHHHHHHHHHH
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~ 21 (343)
.|.||+|+|||||++.++..
T Consensus 50 ~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 50 AIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEECCTTSSHHHHHHHHHTC
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999975
No 402
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.13 E-value=0.0072 Score=51.59 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.6
Q ss_pred EEeCCCCchHHHHHHHHHHHcC
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~ 23 (343)
.|.||+|+|||||++.++..+.
T Consensus 36 ~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 36 TLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEECSTTSSHHHHHHHHTTSSC
T ss_pred EEECCCCCCHHHHHHHHhCCCC
Confidence 5899999999999999997654
No 403
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.13 E-value=0.0074 Score=51.61 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+.|.||+|+|||||++.++..+
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 31 IAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999765
No 404
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.11 E-value=0.0074 Score=52.25 Aligned_cols=22 Identities=27% Similarity=0.671 Sum_probs=19.5
Q ss_pred EEeCCCCchHHHHHHHHHHHcC
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~ 23 (343)
.|.||+|+|||||++.++..+.
T Consensus 54 ~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 54 VVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCCcHHHHHHHHHcCCC
Confidence 5899999999999999997653
No 405
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.11 E-value=0.0075 Score=54.56 Aligned_cols=21 Identities=33% Similarity=0.665 Sum_probs=19.4
Q ss_pred EEeCCCCchHHHHHHHHHHHc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l 22 (343)
.|.||+|||||||++.++...
T Consensus 34 ~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 34 FIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEESTTSSHHHHHHHHHTSS
T ss_pred EEECCCCchHHHHHHHHhcCC
Confidence 589999999999999999866
No 406
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.11 E-value=0.0076 Score=51.05 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.6
Q ss_pred EEeCCCCchHHHHHHHHHHHcC
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~ 23 (343)
.|.||+|+|||||++.++..+.
T Consensus 38 ~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 38 AVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEECCTTSSHHHHHHHHTTSSC
T ss_pred EEECCCCCCHHHHHHHHhCCCc
Confidence 5899999999999999997654
No 407
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.09 E-value=0.0075 Score=52.33 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=19.6
Q ss_pred EEeCCCCchHHHHHHHHHHHcC
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~ 23 (343)
.|.||+|+|||||++.++..+.
T Consensus 41 ~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 41 AIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEECCTTSCHHHHHHHHTSSSC
T ss_pred EEECCCCCcHHHHHHHHhcCCC
Confidence 5899999999999999998653
No 408
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.09 E-value=0.063 Score=44.00 Aligned_cols=16 Identities=38% Similarity=0.245 Sum_probs=13.1
Q ss_pred CEEeCCCCchHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGK 16 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~ 16 (343)
+++.+|+|+|||..+-
T Consensus 43 ~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 43 ILARAKNGTGKSGAYL 58 (206)
T ss_dssp EEEECCSSSTTHHHHH
T ss_pred EEEECCCCCchHHHHH
Confidence 4789999999997544
No 409
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.08 E-value=0.0076 Score=51.68 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.6
Q ss_pred EEeCCCCchHHHHHHHHHHHcC
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~ 23 (343)
.|.||+|+|||||++.++..+.
T Consensus 39 ~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 39 GIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEECSTTSSHHHHHHHHTTSSC
T ss_pred EEECCCCCCHHHHHHHHhcCCC
Confidence 5899999999999999988654
No 410
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.06 E-value=0.0079 Score=51.64 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.7
Q ss_pred EEeCCCCchHHHHHHHHHHHcC
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~ 23 (343)
.|.||+|+|||||++.++..+.
T Consensus 30 ~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 30 HLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEECCTTSSHHHHHHHHTTSSC
T ss_pred EEECCCCCcHHHHHHHHhCCCC
Confidence 5899999999999999997664
No 411
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.06 E-value=0.1 Score=43.08 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=18.8
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
|+|.|++|+|||+|++.+...
T Consensus 28 i~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 579999999999999999864
No 412
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.05 E-value=0.011 Score=46.24 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=19.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
|++.|++|+|||++++.++..-
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5789999999999999998753
No 413
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.05 E-value=0.012 Score=46.17 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=19.0
Q ss_pred EEeCCCCchHHHHHHHHHHHc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l 22 (343)
+|+||.|+|||++..+++-.+
T Consensus 27 ~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 27 LIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999998655
No 414
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.03 E-value=0.0093 Score=56.57 Aligned_cols=24 Identities=8% Similarity=0.052 Sum_probs=22.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA 24 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~ 24 (343)
|.|.|.+||||||+++++|+.++.
T Consensus 398 I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 398 IVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEECTTCCSCHHHHHHHHHHHHTT
T ss_pred EEecccCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999985
No 415
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.02 E-value=0.0095 Score=53.87 Aligned_cols=21 Identities=43% Similarity=0.596 Sum_probs=19.3
Q ss_pred EEeCCCCchHHHHHHHHHHHc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l 22 (343)
.|.||+|||||||++.++...
T Consensus 45 ~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 45 GLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEECSTTSSHHHHHHHHHTSS
T ss_pred EEECCCCCcHHHHHHHHhCCC
Confidence 588999999999999999866
No 416
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.99 E-value=0.0084 Score=51.69 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.5
Q ss_pred EEeCCCCchHHHHHHHHHHHcC
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~ 23 (343)
.|.||+|+|||||++.++..+.
T Consensus 45 ~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 45 GLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEECCTTSSHHHHHHHHTTSSC
T ss_pred EEECCCCCCHHHHHHHHhcCCC
Confidence 5899999999999999997653
No 417
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.99 E-value=0.0054 Score=57.87 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=21.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
|++.|.||+||||+++.+++.++
T Consensus 42 IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 42 IVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 57899999999999999999875
No 418
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.98 E-value=0.0099 Score=54.19 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=19.4
Q ss_pred EEeCCCCchHHHHHHHHHHHc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l 22 (343)
.|.||+|||||||++.++...
T Consensus 33 ~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 33 VFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEECCTTSSHHHHHHHHHTSS
T ss_pred EEEcCCCchHHHHHHHHHcCC
Confidence 589999999999999999876
No 419
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.98 E-value=0.0085 Score=52.37 Aligned_cols=22 Identities=32% Similarity=0.458 Sum_probs=19.8
Q ss_pred EEeCCCCchHHHHHHHHHHHcC
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~ 23 (343)
.|.||+|+|||||++.++..+.
T Consensus 51 ~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 51 ILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEECCTTSSHHHHHHHHTTSSC
T ss_pred EEECCCCCcHHHHHHHHhCCCC
Confidence 5899999999999999998764
No 420
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.98 E-value=0.0082 Score=57.64 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=25.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC----CcEEEEeccc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK----ATFFCISAST 33 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~----~~~~~v~~~~ 33 (343)
+.|.|++|+||||+++.++..++ ..+..++...
T Consensus 372 I~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 372 VFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred EEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 46899999999999999999885 2344455443
No 421
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.96 E-value=0.01 Score=53.85 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=19.3
Q ss_pred EEeCCCCchHHHHHHHHHHHc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l 22 (343)
.|.||+|||||||.+.++...
T Consensus 33 ~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 33 ALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEECCTTSSHHHHHHHHHTSS
T ss_pred EEECCCCchHHHHHHHHhcCC
Confidence 588999999999999999866
No 422
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.96 E-value=0.0091 Score=53.87 Aligned_cols=21 Identities=38% Similarity=0.680 Sum_probs=19.3
Q ss_pred EEeCCCCchHHHHHHHHHHHc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l 22 (343)
.|.||+|||||||++.++...
T Consensus 30 ~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 30 VILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEECCCTHHHHHHHHHHHTSS
T ss_pred EEECCCCccHHHHHHHHHcCC
Confidence 588999999999999999866
No 423
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.96 E-value=0.0085 Score=52.12 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=19.8
Q ss_pred EEeCCCCchHHHHHHHHHHHcC
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~ 23 (343)
.|.||+|+|||||++.++..+.
T Consensus 49 ~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 49 ALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEECSTTSSHHHHHHHHTTSSC
T ss_pred EEECCCCCCHHHHHHHHhcCCC
Confidence 5899999999999999998764
No 424
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.96 E-value=0.011 Score=53.61 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+.|.||+|+||||+++.+|..+
T Consensus 160 i~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHhhc
Confidence 4689999999999999999876
No 425
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.95 E-value=0.0086 Score=51.77 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=35.4
Q ss_pred cCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHHhhhceEecc
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIP 297 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allRR~d~~i~~~ 297 (343)
..|.||++||--+ +=|......+.++|.++.. + .-+|.+|.+++.+ ++.|+++.+.
T Consensus 172 ~~p~lllLDEPts-------~LD~~~~~~i~~~l~~l~~--~-----~tviivtH~~~~~-----~~~d~i~~l~ 227 (260)
T 2ghi_A 172 KDPKIVIFDEATS-------SLDSKTEYLFQKAVEDLRK--N-----RTLIIIAHRLSTI-----SSAESIILLN 227 (260)
T ss_dssp HCCSEEEEECCCC-------TTCHHHHHHHHHHHHHHTT--T-----SEEEEECSSGGGS-----TTCSEEEEEE
T ss_pred cCCCEEEEECccc-------cCCHHHHHHHHHHHHHhcC--C-----CEEEEEcCCHHHH-----HhCCEEEEEE
Confidence 4688999999443 2234455667777777742 2 2556677777654 2378777764
No 426
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.95 E-value=0.01 Score=53.80 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=19.3
Q ss_pred EEeCCCCchHHHHHHHHHHHc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l 22 (343)
.|.||+|||||||.+.++...
T Consensus 33 ~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 33 ALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEECSTTSSHHHHHHHHHTSS
T ss_pred EEEcCCCchHHHHHHHHHCCC
Confidence 588999999999999999866
No 427
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.91 E-value=0.0082 Score=54.55 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHcC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~ 23 (343)
++|.||+|+||||++++++..+.
T Consensus 178 i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 178 IVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp EEEEESSSSCHHHHHHHHHTTSC
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 46899999999999999998774
No 428
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.91 E-value=0.036 Score=49.65 Aligned_cols=68 Identities=21% Similarity=0.250 Sum_probs=46.1
Q ss_pred CcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCC-------CCC-------CCcEEEEeecCCcccccHHHHHh
Q psy4538 224 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAS-------TLD-------DDLVLVIGATNRPQELDEAARRR 289 (343)
Q Consensus 224 ~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~-------~~~-------~~~v~vi~aTN~~~~lD~allRR 289 (343)
.++|+|+||++.+.+. +-..|+..|+... +.. -..+.++++||+++.|++++.+|
T Consensus 102 ~~~v~~iDE~~~l~~~-----------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR 170 (334)
T 1in4_A 102 RGDVLFIDEIHRLNKA-----------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSR 170 (334)
T ss_dssp TTCEEEEETGGGCCHH-----------HHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTT
T ss_pred CCCEEEEcchhhcCHH-----------HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHh
Confidence 4679999999998641 1122222332211 000 01267788999999999999999
Q ss_pred hhceEeccCCCCC
Q psy4538 290 LVKRLYIPLPDEQ 302 (343)
Q Consensus 290 ~d~~i~~~~P~~~ 302 (343)
|...+.+++|+.+
T Consensus 171 ~~l~~~Ld~~~~~ 183 (334)
T 1in4_A 171 FGIILELDFYTVK 183 (334)
T ss_dssp CSEEEECCCCCHH
T ss_pred cCceeeCCCCCHH
Confidence 9988999998875
No 429
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.91 E-value=0.012 Score=46.27 Aligned_cols=21 Identities=14% Similarity=0.244 Sum_probs=19.1
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
|++.|++|+|||++++.+...
T Consensus 8 i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 578999999999999999874
No 430
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.90 E-value=0.011 Score=53.89 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=19.3
Q ss_pred EEeCCCCchHHHHHHHHHHHc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l 22 (343)
.|.||+|||||||.+.++...
T Consensus 41 ~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 41 VLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEECCTTSSHHHHHHHHHTSS
T ss_pred EEECCCCChHHHHHHHHHcCC
Confidence 589999999999999999865
No 431
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.90 E-value=0.0091 Score=51.38 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.7
Q ss_pred EEeCCCCchHHHHHHHHHHHcC
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~ 23 (343)
.|.||+|+|||||++.++..+.
T Consensus 35 ~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 35 AVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEECCSSSSHHHHHHHHTTSSC
T ss_pred EEECCCCCCHHHHHHHHhCCCC
Confidence 5899999999999999998664
No 432
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.89 E-value=0.0091 Score=51.77 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.6
Q ss_pred EEeCCCCchHHHHHHHHHHHcC
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~ 23 (343)
.|.||+|+|||||++.++..+.
T Consensus 37 ~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 37 LVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEECSTTSSHHHHHHHHTTSSC
T ss_pred EEECCCCCcHHHHHHHHhCCCC
Confidence 5899999999999999997654
No 433
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.87 E-value=0.31 Score=40.24 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=16.1
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
+++.+|+|+|||..+-..+-.
T Consensus 54 ~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 54 VLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCchhhhhhHHHHH
Confidence 478999999999876655443
No 434
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.86 E-value=0.19 Score=41.72 Aligned_cols=21 Identities=29% Similarity=0.310 Sum_probs=15.2
Q ss_pred CEEeCCCCchHHHH-HHHHHHH
Q psy4538 1 ILLFGPPGTGKTLI-GKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~l-a~~la~~ 21 (343)
+++.+|+|+|||.. +-.+...
T Consensus 54 ~lv~~pTGsGKT~~~~~~~l~~ 75 (224)
T 1qde_A 54 VLAQAQSGTGKTGTFSIAALQR 75 (224)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999976 3344443
No 435
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.86 E-value=0.012 Score=46.62 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=18.7
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
+.+.|++|+|||+|++.++..
T Consensus 6 v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999863
No 436
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.85 E-value=0.024 Score=52.58 Aligned_cols=20 Identities=35% Similarity=0.268 Sum_probs=17.5
Q ss_pred EEeCCCCchHHHHHHHHHHH
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~ 21 (343)
++.|+||||||+++..++..
T Consensus 165 ~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 165 LVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp EEEECTTSCHHHHHHHHCCT
T ss_pred EEEcCCCCCHHHHHHHHhcc
Confidence 68999999999999888753
No 437
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.84 E-value=0.013 Score=45.88 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=19.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
|++.|++|+|||++++.+....
T Consensus 6 i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 5799999999999999998643
No 438
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.84 E-value=0.011 Score=53.82 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=19.3
Q ss_pred EEeCCCCchHHHHHHHHHHHc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l 22 (343)
.|.||+|||||||.+.++...
T Consensus 33 ~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 33 ILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEECSTTSSHHHHHHHHHTSS
T ss_pred EEECCCCcHHHHHHHHHHcCC
Confidence 589999999999999999866
No 439
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.84 E-value=0.069 Score=49.42 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=24.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISA 31 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~ 31 (343)
+.+.|++|+||||++..+|..+ +..+..+++
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 3578999999999999999876 455665554
No 440
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.84 E-value=0.013 Score=48.77 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=19.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
|++.|++|+|||++++.++...
T Consensus 15 i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 15 IIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5799999999999999999865
No 441
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.80 E-value=0.011 Score=47.91 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=18.4
Q ss_pred CEEeCCCCchHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAA 20 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~ 20 (343)
|+|.|++|+|||+|++.++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999986
No 442
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.80 E-value=0.13 Score=42.73 Aligned_cols=17 Identities=29% Similarity=0.173 Sum_probs=13.5
Q ss_pred CEEeCCCCchHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKC 17 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~ 17 (343)
+++.+|+|+|||..+-.
T Consensus 44 ~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 44 MVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp EEEECCSSHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHH
Confidence 47899999999986433
No 443
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.78 E-value=0.014 Score=47.40 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=19.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
|++.|++|+|||++++.++...
T Consensus 51 i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 51 IIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5799999999999999998754
No 444
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.78 E-value=0.14 Score=42.98 Aligned_cols=16 Identities=38% Similarity=0.349 Sum_probs=13.1
Q ss_pred CEEeCCCCchHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGK 16 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~ 16 (343)
+++.+|+|+|||..+-
T Consensus 65 ~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 65 VLGAAKTGSGKTLAFL 80 (236)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEEeCCCCcHHHHHH
Confidence 4789999999998543
No 445
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.77 E-value=0.01 Score=51.30 Aligned_cols=21 Identities=29% Similarity=0.686 Sum_probs=19.1
Q ss_pred EEeCCCCchHHHHHHHHHHHc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l 22 (343)
.|.||+|+|||||++.++..+
T Consensus 34 ~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 34 IILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEECCTTSSHHHHHHHHTTSS
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999765
No 446
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.77 E-value=0.12 Score=43.62 Aligned_cols=16 Identities=31% Similarity=0.353 Sum_probs=13.1
Q ss_pred CEEeCCCCchHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGK 16 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~ 16 (343)
+++.+|+|+|||...-
T Consensus 69 ~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 69 MVGVAQTGSGKTLSYL 84 (242)
T ss_dssp EEEEECTTSCHHHHHH
T ss_pred EEEECCCcCHHHHHHH
Confidence 4788999999997643
No 447
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.73 E-value=0.014 Score=45.87 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
|++.|++|+|||++++.+...-
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5789999999999999998643
No 448
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.70 E-value=0.024 Score=54.08 Aligned_cols=67 Identities=12% Similarity=0.141 Sum_probs=43.8
Q ss_pred cCcceEeecchhhhhcccCCCcchhHHHHHHHHHHhhcCCCCCCCCcEEEEeecCCcccccHHHHHhhhceEeccCCCCC
Q psy4538 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQ 302 (343)
Q Consensus 223 ~~p~ilf~DEiDsl~~~R~~~~~~~~~r~v~~lL~~mdg~~~~~~~~v~vi~aTN~~~~lD~allRR~d~~i~~~~P~~~ 302 (343)
..++||||||+|.+.+... ..++.|+..|+.. +..|++|+++..+..+.+ ++|+...+.|+.|+.+
T Consensus 147 ~~~~vliIDEid~l~~~~~--------~~l~~L~~~l~~~----~~~iIli~~~~~~~~l~~--l~~r~~~i~f~~~~~~ 212 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDR--------GGVGQLAQFCRKT----STPLILICNERNLPKMRP--FDRVCLDIQFRRPDAN 212 (516)
T ss_dssp TTSEEEEECSGGGCCTTST--------THHHHHHHHHHHC----SSCEEEEESCTTSSTTGG--GTTTSEEEECCCCCHH
T ss_pred CCCeEEEEECCCccchhhH--------HHHHHHHHHHHhc----CCCEEEEEcCCCCccchh--hHhceEEEEeCCCCHH
Confidence 5689999999999986431 1255566555542 222666666655555654 4566778999999875
Q ss_pred C
Q psy4538 303 K 303 (343)
Q Consensus 303 ~ 303 (343)
+
T Consensus 213 ~ 213 (516)
T 1sxj_A 213 S 213 (516)
T ss_dssp H
T ss_pred H
Confidence 3
No 449
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.70 E-value=0.015 Score=45.81 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.6
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
|++.|++|+|||++++.+...-
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 5789999999999999998754
No 450
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.70 E-value=0.015 Score=45.63 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=19.0
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
|++.|++|+|||++++.+...
T Consensus 7 i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 578999999999999999874
No 451
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.69 E-value=0.013 Score=45.83 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
|++.|++|+|||++++.+....
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 4789999999999999998753
No 452
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.68 E-value=0.094 Score=55.77 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.9
Q ss_pred EEeCCCCchHHHHHHHHHHHcC
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~ 23 (343)
.|.||+|+||||+++.+...+.
T Consensus 448 aivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 448 ALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EEEECSSSCHHHHHHHHTTSSC
T ss_pred EEEecCCCcHHHHHHHhccccc
Confidence 5899999999999999998773
No 453
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.67 E-value=0.044 Score=47.13 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=18.7
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
|+|.|+||+|||+|.+++...
T Consensus 8 I~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 8 VALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 478999999999999999863
No 454
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.67 E-value=0.015 Score=46.21 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=18.9
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
|++.|++|+|||++++.+...
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 579999999999999999864
No 455
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.66 E-value=0.015 Score=46.21 Aligned_cols=21 Identities=38% Similarity=0.755 Sum_probs=18.6
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
|++.|++|+|||+|++.+...
T Consensus 7 i~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCccHHHHHHHHhcC
Confidence 579999999999999999753
No 456
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.66 E-value=0.013 Score=49.85 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.1
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
|.|.|++|+||||+++.+++.+
T Consensus 30 i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 30 IVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp EEEEESTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999877
No 457
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.64 E-value=0.016 Score=45.75 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=19.1
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
|++.|++|+|||++++.+...
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 578999999999999999865
No 458
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.64 E-value=0.0094 Score=53.92 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=19.2
Q ss_pred EEeCCCCchHHHHHHHHHHHc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l 22 (343)
.|.||+|||||||.+.++...
T Consensus 35 ~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 35 GILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEECSCHHHHHHHHHHHHTSS
T ss_pred EEECCCCCcHHHHHHHHhCCC
Confidence 588999999999999999865
No 459
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.63 E-value=0.067 Score=48.02 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+.+.|+||+||||+++.++..+
T Consensus 59 i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 59 LGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 3588999999999999998765
No 460
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.62 E-value=0.15 Score=42.50 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=13.1
Q ss_pred CEEeCCCCchHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGK 16 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~ 16 (343)
+++.+|+|+|||..+-
T Consensus 60 ~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 60 LIVVAQTGTGKTLSYL 75 (228)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCCChHHHHHH
Confidence 4789999999997543
No 461
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.62 E-value=0.016 Score=46.23 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.3
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
|++.|++|+|||++++.+....
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 5789999999999999998743
No 462
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=94.61 E-value=0.043 Score=51.43 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=27.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcEEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISAS 32 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~~~v~~~ 32 (343)
+++++|+|+|||..+-.++...+.+.+.+.+.
T Consensus 111 ~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 111 GCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 37899999999999988888888777777664
No 463
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.60 E-value=0.014 Score=57.10 Aligned_cols=22 Identities=41% Similarity=0.712 Sum_probs=17.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
.++.||||||||+++..++..+
T Consensus 198 ~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 198 SLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 3789999999999887776654
No 464
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.54 E-value=0.016 Score=48.69 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCC
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKA 24 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~ 24 (343)
|.|.|++|+||||+++.+++.++.
T Consensus 24 i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 24 ITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 468899999999999999997754
No 465
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.53 E-value=0.048 Score=48.81 Aligned_cols=31 Identities=16% Similarity=0.099 Sum_probs=20.9
Q ss_pred CEEeCCCCchHHHHHHHHHHHc-----CCcEEEEec
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC-----KATFFCISA 31 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l-----~~~~~~v~~ 31 (343)
+++.+|+|+|||..+-..+.+. +...+.+.+
T Consensus 47 ~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P 82 (367)
T 1hv8_A 47 IVAQARTGSGKTASFAIPLIELVNENNGIEAIILTP 82 (367)
T ss_dssp EEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECS
T ss_pred EEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcC
Confidence 4788999999998766554433 445555544
No 466
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.53 E-value=0.017 Score=45.31 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=19.0
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
|++.|++|+|||+|++.+...
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 578999999999999999874
No 467
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.52 E-value=0.05 Score=47.22 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=18.8
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
|.|.|+||+|||+|.++++..
T Consensus 6 I~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 6 IALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 468999999999999999864
No 468
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.51 E-value=0.041 Score=47.26 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=18.8
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
|.|.|+||+|||+|.+++...
T Consensus 4 I~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 4 ALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 478999999999999999765
No 469
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.51 E-value=0.018 Score=45.37 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=18.9
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
|++.|++|+|||++++.+...
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 578999999999999999863
No 470
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.50 E-value=0.015 Score=45.79 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=18.8
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
|++.|++|+|||++++.+...
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 578999999999999999864
No 471
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.49 E-value=0.019 Score=45.04 Aligned_cols=21 Identities=33% Similarity=0.327 Sum_probs=18.9
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
|++.|++|+|||++++.+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 579999999999999999764
No 472
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.47 E-value=0.054 Score=54.04 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=18.6
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
+.|.||+|+||||+.|.++..
T Consensus 579 ~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 579 VLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp EEEESCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHhh
Confidence 368999999999999999864
No 473
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.45 E-value=0.017 Score=46.57 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=18.9
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
|.|.|++|+|||+|++.++..
T Consensus 10 i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 10 IALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999873
No 474
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.45 E-value=0.017 Score=45.52 Aligned_cols=20 Identities=25% Similarity=0.599 Sum_probs=18.0
Q ss_pred CEEeCCCCchHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAA 20 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~ 20 (343)
|++.|++|+|||+|++.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 57899999999999999964
No 475
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.41 E-value=0.018 Score=45.39 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.8
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
|++.|++|+|||++++.+...
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 578999999999999999863
No 476
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.40 E-value=0.019 Score=46.36 Aligned_cols=21 Identities=29% Similarity=0.340 Sum_probs=19.0
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
|++.|++|+|||+|++.+...
T Consensus 14 i~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999999874
No 477
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.40 E-value=0.014 Score=53.39 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=18.9
Q ss_pred EEeCCCCchHHHHHHHHHHHc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l 22 (343)
.|.||+||||||+++.++...
T Consensus 51 ~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 51 GLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEESTTSSHHHHHHHHHTCS
T ss_pred EEECCCCChHHHHHHHHhCCC
Confidence 589999999999999999754
No 478
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=94.39 E-value=0.32 Score=46.11 Aligned_cols=32 Identities=19% Similarity=0.432 Sum_probs=22.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHc--------CCcEEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC--------KATFFCISAS 32 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l--------~~~~~~v~~~ 32 (343)
+++.+|+|+|||..+-..+.+. +...+.+.+.
T Consensus 22 ~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 61 (555)
T 3tbk_A 22 TIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61 (555)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred EEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 4789999999998766655443 5556666543
No 479
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.38 E-value=0.016 Score=53.98 Aligned_cols=32 Identities=34% Similarity=0.321 Sum_probs=25.8
Q ss_pred CEEeCCCCchHHHHHHHHHHHc---CCcEEEEecc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC---KATFFCISAS 32 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l---~~~~~~v~~~ 32 (343)
|++.|++|+||||++..+|..+ |..+..+++.
T Consensus 102 I~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 102 ILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp EEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 4689999999999999998876 4566666654
No 480
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.37 E-value=0.017 Score=48.30 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=20.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
|.|.|++|+||||.++.+++.+
T Consensus 6 i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 6 IVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999887
No 481
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.36 E-value=0.018 Score=45.92 Aligned_cols=21 Identities=33% Similarity=0.689 Sum_probs=18.6
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
|++.|++|+|||+|++.+...
T Consensus 9 i~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGG
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 578999999999999999753
No 482
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.36 E-value=0.02 Score=45.22 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=18.8
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
|++.|++|+|||+|++.+...
T Consensus 10 i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 10 ILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999999764
No 483
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.33 E-value=0.055 Score=54.27 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=18.6
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
+.|.||.|+||||+.|.++..
T Consensus 610 ~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 610 LIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 368999999999999999864
No 484
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.33 E-value=0.02 Score=45.50 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
|++.|++|+|||++++.+...-
T Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 5789999999999999998754
No 485
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.31 E-value=0.02 Score=46.39 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.4
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
|++.|++|+|||+|++.+...-
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 5799999999999999998743
No 486
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=94.29 E-value=0.019 Score=48.86 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=23.0
Q ss_pred CEEeCCCCchHHHHHHHHHHHcCCcE
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQCKATF 26 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l~~~~ 26 (343)
|.|+|++|||||++++.+...+|.+.
T Consensus 4 i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 4 IFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 35899999999999999999888664
No 487
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.28 E-value=0.021 Score=46.18 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
|++.|++|+|||++++.++...
T Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 5789999999999999998753
No 488
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.27 E-value=0.15 Score=52.47 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=17.0
Q ss_pred CEEeCCCCchHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVA 19 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la 19 (343)
++|.||.|+||||+.|.++
T Consensus 792 ~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 792 VLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHH
Confidence 4689999999999999983
No 489
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.25 E-value=0.022 Score=45.83 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=19.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
|++.|++|+|||+|++.+....
T Consensus 7 i~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 5799999999999999998743
No 490
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.25 E-value=0.022 Score=45.51 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=19.0
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
|++.|++|+|||++++.+...
T Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 578999999999999999874
No 491
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.23 E-value=0.019 Score=45.67 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=18.8
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
|++.|++|+|||+|++.+...
T Consensus 17 i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 578999999999999999864
No 492
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.23 E-value=0.014 Score=51.25 Aligned_cols=21 Identities=24% Similarity=0.350 Sum_probs=18.9
Q ss_pred EEeCCCCchHHHHHHHHHHHc
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l 22 (343)
.|.||+|+|||||++.++..+
T Consensus 68 ~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 68 AVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEESTTSSHHHHHHHHTTSS
T ss_pred EEECCCCCcHHHHHHHHhcCC
Confidence 589999999999999998754
No 493
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.22 E-value=0.017 Score=45.45 Aligned_cols=20 Identities=35% Similarity=0.838 Sum_probs=17.8
Q ss_pred CEEeCCCCchHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAA 20 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~ 20 (343)
|++.|++|+|||+|++.+..
T Consensus 5 i~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHcC
Confidence 57899999999999999864
No 494
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.22 E-value=0.022 Score=46.30 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=19.3
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
|++.|++|+|||+|++++...
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999999875
No 495
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.21 E-value=0.019 Score=46.26 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=19.1
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
|++.|++|+|||+|++.++..
T Consensus 10 i~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 578999999999999999875
No 496
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.20 E-value=0.02 Score=45.66 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=19.2
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
|++.|++|+|||+|++.+...
T Consensus 12 i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 12 LVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 578999999999999999875
No 497
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.19 E-value=0.02 Score=51.86 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.6
Q ss_pred EEeCCCCchHHHHHHHHHHHcC
Q psy4538 2 LLFGPPGTGKTLIGKCVAAQCK 23 (343)
Q Consensus 2 Ll~Gp~GtGKT~la~~la~~l~ 23 (343)
.|.||+|+|||||++.++....
T Consensus 58 ~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 58 GVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEcCCCchHHHHHHHHhcCCC
Confidence 5899999999999999998663
No 498
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.17 E-value=0.023 Score=45.56 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=19.0
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
|++.|++|+|||+|++.++..
T Consensus 21 i~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 579999999999999999874
No 499
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.17 E-value=0.022 Score=45.27 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=18.7
Q ss_pred CEEeCCCCchHHHHHHHHHHH
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQ 21 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~ 21 (343)
|++.|++|+|||++++.+...
T Consensus 11 i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 11 VTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp EEEESCTTTTHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999763
No 500
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.16 E-value=0.021 Score=51.27 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=19.5
Q ss_pred CEEeCCCCchHHHHHHHHHHHc
Q psy4538 1 ILLFGPPGTGKTLIGKCVAAQC 22 (343)
Q Consensus 1 iLl~Gp~GtGKT~la~~la~~l 22 (343)
+.|.||||+||||+++.++..+
T Consensus 58 v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 58 VGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999765
Done!