RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4538
(343 letters)
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 195 bits (496), Expect = 2e-61
Identities = 74/217 (34%), Positives = 112/217 (51%), Gaps = 17/217 (7%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+L+ GPPGTGKTL+ K +A + K FF IS S + G G VR +F A P I
Sbjct: 48 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCI 107
Query: 61 IFIDEIDSLLCQRS---DQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDE 117
IFIDEID++ QR ++ + + L+ +DG + ++VI ATNRP LD
Sbjct: 108 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG--IIVIAATNRPDVLDP 165
Query: 118 AARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASL 175
A R R +++ + LPD + R +I+ +R + + + D + R T FSGAD+A+L
Sbjct: 166 ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI-DAAIIARGTPGFSGADLANL 224
Query: 176 CREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTV 212
EA+L R + R +S+ +F A +
Sbjct: 225 VNEAALFAARG---------NKRVVSMVEFEKAKDKI 252
Score = 86.8 bits (215), Expect = 2e-20
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 223 HQPSIIFIDEIDSLLCQRS---DQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRP 279
P IIFIDEID++ QR ++ + + L+ +DG + ++VI ATNRP
Sbjct: 103 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG--IIVIAATNRP 160
Query: 280 QELDEAARR--RLVKRLYIPLPDEQ 302
LD A R R +++ + LPD +
Sbjct: 161 DVLDPALLRPGRFDRQVVVGLPDVR 185
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 193 bits (493), Expect = 4e-61
Identities = 68/213 (31%), Positives = 102/213 (47%), Gaps = 17/213 (7%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+LL GPPG GKT + + VA + + F S S + G G VR LF A H P I
Sbjct: 45 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 104
Query: 61 IFIDEIDSLLCQRSDQ---ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDE 117
+FIDEID++ +R N+ + + L+ +DG ++V+ ATNRP LD
Sbjct: 105 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA--IVVMAATNRPDILDP 162
Query: 118 AARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASL 175
A R R +++ I PD + R +I+ R + V D+ + + T F GAD+ +L
Sbjct: 163 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV-DLALLAKRTPGFVGADLENL 221
Query: 176 CREASLGPVRSIDLSRIDALDVRPISIDDFRDA 208
EA+L R R I++ D +A
Sbjct: 222 LNEAALLAARE---------GRRKITMKDLEEA 245
Score = 89.1 bits (221), Expect = 3e-21
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 223 HQPSIIFIDEIDSLLCQRSDQ---ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRP 279
H P I+FIDEID++ +R N+ + + L+ +DG ++V+ ATNRP
Sbjct: 100 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA--IVVMAATNRP 157
Query: 280 QELDEAARR--RLVKRLYIPLPDEQ 302
LD A R R +++ I PD +
Sbjct: 158 DILDPALLRPGRFDRQIAIDAPDVK 182
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 144 bits (363), Expect = 1e-41
Identities = 77/222 (34%), Positives = 116/222 (52%), Gaps = 15/222 (6%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+L +GPPG GKTL+ K +A +C+A F I L + W+GE E VR +F A P +
Sbjct: 44 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 103
Query: 61 IFIDEIDSLLCQRS---DQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDE 117
+F DE+DS+ R + R+ + L +DG ST + V +IGATNRP +D
Sbjct: 104 LFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN--VFIIGATNRPDIIDP 161
Query: 118 AARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASL 175
A R RL + +YIPLPDE++R I+ LR + D+E + +MT FSGAD+ +
Sbjct: 162 AILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEI 220
Query: 176 CREASLGPVR---SIDLSRIDALDVRPISI----DDFRDALK 210
C+ A +R ++ R P ++ DD ++
Sbjct: 221 CQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIR 262
Score = 61.0 bits (147), Expect = 2e-11
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 223 HQPSIIFIDEIDSLLCQRS---DQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRP 279
P ++F DE+DS+ R + R+ + L +DG ST + V +IGATNRP
Sbjct: 99 AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN--VFIIGATNRP 156
Query: 280 QELDEAARR--RLVKRLYIPLPDEQ 302
+D A R RL + +YIPLPDE+
Sbjct: 157 DIIDPAILRPGRLDQLIYIPLPDEK 181
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 128 bits (323), Expect = 6e-36
Identities = 83/220 (37%), Positives = 120/220 (54%), Gaps = 13/220 (5%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
ILL+GPPGTGKTLI + VA + A FF I+ + SK GE E +R F A + P+I
Sbjct: 41 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 100
Query: 61 IFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAAR 120
IFIDE+D++ +R E RR+ ++ L +DG V+V+ ATNRP +D A R
Sbjct: 101 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH--VIVMAATNRPNSIDPALR 158
Query: 121 R--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCRE 178
R R + + I +PD R EI+ +N+ + VD + T GAD+A+LC E
Sbjct: 159 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVA-NETHGHVGADLAALCSE 217
Query: 179 ASLGPVR----SIDLS----RIDALDVRPISIDDFRDALK 210
A+L +R IDL + ++ +++DDFR AL
Sbjct: 218 AALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALS 257
Score = 46.2 bits (108), Expect = 2e-06
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQEL 282
+ P+IIFIDE+D++ +R E RR+ ++ L +DG V+V+ ATNRP +
Sbjct: 96 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH--VIVMAATNRPNSI 153
Query: 283 DEAARR--RLVKRLYIPLPDEQ 302
D A RR R + + I +PD
Sbjct: 154 DPALRRFGRFDREVDIGIPDAT 175
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 108 bits (270), Expect = 1e-27
Identities = 25/220 (11%), Positives = 64/220 (29%), Gaps = 38/220 (17%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQC--KATFFCISASTLTSKWYGEGEKMVRALFAVASVHQP 58
+++ G +GKT + + K + + S + + V + Q
Sbjct: 126 VIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAML--QH 183
Query: 59 SIIFIDEIDSLLCQRSDQ-ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNR---PQE 114
+I ID + +++ + R + L + + +VI + N +
Sbjct: 184 RVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRG--CVVIASLNPTSNDDK 241
Query: 115 LDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADM 172
+ E + R + D +++T+ + +
Sbjct: 242 IVELVKEASRSNSTSLVISTDVDGEWQVLTRTGEGLQR-----------------LTHTL 284
Query: 173 ASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTV 212
+ E S+ + + + A++TV
Sbjct: 285 QTSYGEHSVLTIHT---------SKQSGGKQASGKAIQTV 315
Score = 50.4 bits (120), Expect = 1e-07
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 8/84 (9%)
Query: 224 QPSIIFIDEIDSLLCQRSDQ-ENETSRRLKTEFLISLDGASTLDDDLVLVIGATNR---P 279
Q +I ID + +++ + R + L + + +VI + N
Sbjct: 182 QHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRG--CVVIASLNPTSND 239
Query: 280 QELDEAARR--RLVKRLYIPLPDE 301
++ E + R + D
Sbjct: 240 DKIVELVKEASRSNSTSLVISTDV 263
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 95.0 bits (235), Expect = 2e-23
Identities = 34/185 (18%), Positives = 68/185 (36%), Gaps = 9/185 (4%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKM-VRALFAVASVHQPS 59
+LL GPP +GKT + +A + F I + + + ++ +F A Q S
Sbjct: 43 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLS 102
Query: 60 IIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAA 119
+ +D+I+ LL ++ L+ ++ +L+IG T+R L E
Sbjct: 103 CVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPP--QGRKLLIIGTTSRKDVLQEME 160
Query: 120 RRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTD---FSGADMASLC 176
I +P+ +++ L + + + + + G +
Sbjct: 161 MLNAFST-TIHVPNIATGEQLLEALELL--GNFKDKERTTIAQQVKGKKVWIGIKKLLML 217
Query: 177 REASL 181
E SL
Sbjct: 218 IEMSL 222
Score = 45.7 bits (107), Expect = 2e-06
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 223 HQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQEL 282
Q S + +D+I+ LL ++ L+ ++ +L+IG T+R L
Sbjct: 99 SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPP--QGRKLLIIGTTSRKDVL 156
Query: 283 DEAA-RRRLVKRLYIPLPDEQK 303
E +++P +
Sbjct: 157 QEMEMLNAFSTTIHVPNIATGE 178
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 94.3 bits (233), Expect = 6e-23
Identities = 27/242 (11%), Positives = 64/242 (26%), Gaps = 31/242 (12%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLT---SKWYGEGEKMVRALFAVASVHQ 57
LL G PG+GKT + + + + I T + + + + + +
Sbjct: 35 FLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYS 94
Query: 58 PSIIFIDEIDSLLCQRSDQENETSRRL-KTEFLISLDGASTLDDDL--------VLVIGA 108
+ + T R ++ A + + +G
Sbjct: 95 NRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGT 154
Query: 109 TNRPQELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGR-MTT 165
R + + R + + + L + + DI R
Sbjct: 155 IERYETMYADDPMTARATPKQAHDIVVKNLP-----TNLETLHKTGLFSDIRLYNREGVK 209
Query: 166 DFSGADMASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRPSVCQADFVHQP 225
+S + S+ + +L + R +S + + L+ + + P
Sbjct: 210 LYSSLETPSISPKETL-----------EKELNRKVSGKEIQPTLERIEQKMVLNKHQETP 258
Query: 226 SI 227
Sbjct: 259 EF 260
Score = 34.2 bits (77), Expect = 0.018
Identities = 6/114 (5%), Positives = 25/114 (21%), Gaps = 4/114 (3%)
Query: 191 RIDALDVRPISIDDFRDALKTVRPSVCQADFVHQPSIIFIDEIDSLLCQRSDQENETSRR 250
+ ++ + D + + +A + I+ +
Sbjct: 72 HPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATML 131
Query: 251 LKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLVKRLYIPLPDEQ 302
+ + + +G R + + R + + +
Sbjct: 132 QAKGYETKMYVMAVPKI--NSYLGTIERYETMYADDPMTARATPKQAHDIVVKN 183
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 93.2 bits (231), Expect = 5e-22
Identities = 30/221 (13%), Positives = 58/221 (26%), Gaps = 32/221 (14%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSK-WYGEGEKMVRALF------AVA 53
L GP +GKT + + C ++ G +F
Sbjct: 157 WLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGE 216
Query: 54 SVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQ 113
S PS I+ +D+L D + + K + I N
Sbjct: 217 SRDLPSGQGINNLDNLRDYL-DGSVKVNLEKKHLNKRTQ--------IFPPGIVTMN--- 264
Query: 114 ELDEAARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGAD 171
E R VK++ D + + + + I + + A+
Sbjct: 265 EYSVPKTLQARFVKQIDFRPKDYLKH--CLERSEFLLEKRIIQSGIALLLMLIWYRPVAE 322
Query: 172 MASLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTV 212
A + + +D + S+ ++ V
Sbjct: 323 FAQSIQSRIVEWKERLD---------KEFSLSVYQKMKFNV 354
Score = 32.3 bits (73), Expect = 0.071
Identities = 22/132 (16%), Positives = 41/132 (31%), Gaps = 17/132 (12%)
Query: 174 SLCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRPSVCQADFVHQPSIIFIDEI 233
+L G +++L ++ID F + V+ + ++ PS I+ +
Sbjct: 173 ALLELCG-GKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESR--DLPSGQGINNL 229
Query: 234 DSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARR--RLV 291
D+L D + + K + I N E R V
Sbjct: 230 DNLRDYL-DGSVKVNLEKKHLNKRTQ--------IFPPGIVTMN---EYSVPKTLQARFV 277
Query: 292 KRLYIPLPDEQK 303
K++ D K
Sbjct: 278 KQIDFRPKDYLK 289
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 67.6 bits (164), Expect = 2e-13
Identities = 42/187 (22%), Positives = 70/187 (37%), Gaps = 14/187 (7%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYG-------EGEKMVRALFAVA 53
IL+ GP G GKT I + +A A F + A+ T Y + A A+
Sbjct: 52 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAID 111
Query: 54 SVHQPSIIFIDEIDSLLCQRSDQENETSRR-LKTEFLISLDGAST------LDDDLVLVI 106
+V Q I+FIDEID + + + SR ++ + L ++G++ + D +L I
Sbjct: 112 AVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFI 171
Query: 107 GATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTD 166
+ L RL I + ++L SLT + +
Sbjct: 172 ASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVN 231
Query: 167 FSGADMA 173
+ A
Sbjct: 232 IAFTTDA 238
Score = 33.7 bits (76), Expect = 0.025
Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 10/132 (7%)
Query: 217 CQADFVHQPSIIFIDEIDSLLCQRSDQENETSRR-LKTEFLISLDGAST------LDDDL 269
D V Q I+FIDEID + + + SR ++ + L ++G++ + D
Sbjct: 108 GAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 167
Query: 270 VLVIGATNRPQELDEAARRRLVKRLYIPLPDEQKVPGSNPTMDKIDQENETSRRLKTEFL 329
+L I + L RL I + S ++I E S + + L
Sbjct: 168 ILFIASGAFQVARPSDLIPELQGRLPIRVELT---ALSAADFERILTEPHASLTEQYKAL 224
Query: 330 ISLDGASTLDDD 341
++ +G +
Sbjct: 225 MATEGVNIAFTT 236
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 65.2 bits (157), Expect = 1e-12
Identities = 28/237 (11%), Positives = 66/237 (27%), Gaps = 34/237 (14%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCK----ATFFCISASTLTSKWYGEGEKMVRALFAVASVH 56
L G PGTGKT+ + + K A F I+ + GE
Sbjct: 46 ATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRG 105
Query: 57 QPSIIFIDEID-------SLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGAT 109
F+ + + D + + + F+ A L + ++
Sbjct: 106 LSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVG 165
Query: 110 NRPQELDE----AARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDD--IEEVGRM 163
+ L+ + + +I+ + + + ++ + +
Sbjct: 166 HNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADI 225
Query: 164 TTDFSGADMAS--------LCREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTV 212
T + D + ++ ++ + I+ +D R + K V
Sbjct: 226 TGAQTPLDTNRGDARLAIDILYRSAYAAQQNGR---------KHIAPEDVRKSSKEV 273
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 61.5 bits (148), Expect = 1e-11
Identities = 46/215 (21%), Positives = 79/215 (36%), Gaps = 24/215 (11%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+LLFGPPG GKT + +A + S + S+ + I
Sbjct: 38 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAA-------ILANSLEEGDI 90
Query: 61 IFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAS---TLDDDLVLVIGATNRPQELDE 117
+FIDEI L Q + + +I A+ L+ +IGAT RP +
Sbjct: 91 LFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITA 150
Query: 118 AARR--RLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASL 175
+V+ L P+E A+ + L + + + E+GR + + L
Sbjct: 151 PLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITE--EAALEIGRR-SRGTMRVAKRL 207
Query: 176 CREASLGPVRSIDLSRIDALDVRPISIDDFRDALK 210
R D +++ +V I+ + +AL
Sbjct: 208 FRRV-------RDFAQVAGEEV--ITRERALEALA 233
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 58.4 bits (140), Expect = 1e-10
Identities = 37/213 (17%), Positives = 76/213 (35%), Gaps = 21/213 (9%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+LL GPPG GKT + +A++ + S + + A+ + S+ + +
Sbjct: 38 VLLAGPPGLGKTTLAHIIASELQTNIHVTSG------PVLVKQGDMAAI--LTSLERGDV 89
Query: 61 IFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGAST---LDDDLVLVIGATNRPQELDE 117
+FIDEI L + + + +I ++ +D ++GAT R L
Sbjct: 90 LFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSS 149
Query: 118 AARRRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCR 177
R R L + + EI+ + + + E + + + + L +
Sbjct: 150 PLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKR-SRGTPRIAIRLTK 208
Query: 178 EASLGPVRSIDLSRIDALDVRPISIDDFRDALK 210
D+ + D I+ D ++
Sbjct: 209 RV-------RDMLTVVKADR--INTDIVLKTME 232
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 47.4 bits (111), Expect = 8e-07
Identities = 24/246 (9%), Positives = 62/246 (25%), Gaps = 45/246 (18%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFA--------- 51
G G GKT + K + + + + + +
Sbjct: 49 YGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYP 108
Query: 52 ------------------VASVHQPSIIFIDEIDSL--LCQRSDQENETSRRLKTEFLIS 91
+ + ++ +DE S+ + + ++ T R+ E
Sbjct: 109 IQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR 168
Query: 92 LDGASTLDDDLVLVIGATNRPQELDEAARRRLVKRLYIPLPDEQARCEIVTKLLRNITNS 151
+ + A + +E ++ +L++P + I+ +
Sbjct: 169 DGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD 228
Query: 152 LTVDD--IEEVGRMTTDFSGA-----DMASLCREASLGPVRSIDLSRIDALDVRPISIDD 204
+ +E + + + G + A +S D
Sbjct: 229 TVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAM---------GRDSLSEDL 279
Query: 205 FRDALK 210
R A+
Sbjct: 280 VRKAVS 285
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 44.4 bits (104), Expect = 1e-05
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKM 45
IL+ GP G GKT I + +A A F + A+ T Y E
Sbjct: 52 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVD 96
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 41.9 bits (98), Expect = 6e-05
Identities = 39/161 (24%), Positives = 62/161 (38%), Gaps = 26/161 (16%)
Query: 1 ILLFGPPGTGKTLIGKCVA------------AQCKATFFCISASTLTSKWYGEGEKMVRA 48
LL G G GKT I + +A A C I + +K+ G+ EK +A
Sbjct: 42 PLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKA 101
Query: 49 LFAVASVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGA 108
L SI+FIDEI +++ + + + L+S VIG+
Sbjct: 102 LLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIR--------VIGS 153
Query: 109 TNRPQEL-----DEAARRRLVKRLYIPLPDEQARCEIVTKL 144
T QE + A R +++ I P + +I+ L
Sbjct: 154 TT-YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 193
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 40.7 bits (95), Expect = 1e-04
Identities = 35/204 (17%), Positives = 70/204 (34%), Gaps = 28/204 (13%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQ----CKATFFCISASTLTSKWYGEGEKMVRALFAVASVH 56
+L+ G G GK ++ + + + AS + E + F A
Sbjct: 26 VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS 85
Query: 57 QPSI--------IFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGA 108
+ +F+DEI L + + + R +++ L G ++ + V ++ A
Sbjct: 86 KEGFFELADGGTLFLDEIGEL---SLEAQAKLLRVIESGKFYRLGGRKEIEVN-VRILAA 141
Query: 109 TNRPQELDEAARRRLVKRLY-------IPLPDEQARCEIVTKLLRNITNSLTVDDIEEVG 161
TNR + + + + LY I +P + R E + + N +
Sbjct: 142 TNRNIK-ELVKEGKFREDLYYRLGVIEIEIPPLRERKE----DIIPLANHFLKKFSRKYA 196
Query: 162 RMTTDFSGADMASLCREASLGPVR 185
+ F+ + L G VR
Sbjct: 197 KEVEGFTKSAQELLLSYPWYGNVR 220
Score = 26.4 bits (58), Expect = 5.3
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 227 IIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAA 286
+F+DEI L + + + R +++ L G ++ + V ++ ATNR + +
Sbjct: 97 TLFLDEIGEL---SLEAQAKLLRVIESGKFYRLGGRKEIEVN-VRILAATNRNIK-ELVK 151
Query: 287 RRRLVKRLY 295
+ + LY
Sbjct: 152 EGKFREDLY 160
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 37.4 bits (85), Expect = 0.001
Identities = 8/45 (17%), Positives = 17/45 (37%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKM 45
+ + G +GK+++ +AA T + G E+
Sbjct: 10 VAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQA 54
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 37.8 bits (86), Expect = 0.001
Identities = 13/97 (13%), Positives = 33/97 (34%), Gaps = 4/97 (4%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFA----VASVH 56
L+ G TGK+ I K + + + + Y + + L +
Sbjct: 32 TLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRL 91
Query: 57 QPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLD 93
+ + I ++ ++ + +R+ + F L+
Sbjct: 92 PSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLE 128
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 34.9 bits (79), Expect = 0.006
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFF----CISASTLTSKWYGEGEKMVRALFAVASVH 56
ILL G PG GKT +GK +A++ + L + E + + V
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDEL 66
Query: 57 Q 57
Sbjct: 67 D 67
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 34.6 bits (78), Expect = 0.007
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCIS 30
+L G PG+GK+ IG+ +A
Sbjct: 4 AVLVGLPGSGKSTIGRRLAKALGVGLLDTD 33
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 34.5 bits (78), Expect = 0.007
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCIS 30
I + G G G T +G+ +A F
Sbjct: 5 IFMVGARGCGMTTVGRELARALGYEFVDTD 34
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 34.6 bits (78), Expect = 0.008
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKM 45
IL+ G PGTGKT + + +AA+ F + L + + E
Sbjct: 8 ILITGTPGTGKTSMAEMIAAELDG-FQHLEVGKLVKENHFYTEYD 51
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 34.3 bits (77), Expect = 0.010
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI 29
I L GP G GK+ IG+ +A Q F+
Sbjct: 5 IFLVGPMGAGKSTIGRQLAQQLNMEFYDS 33
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 34.2 bits (77), Expect = 0.011
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTL 34
+LL G PG+GK+ I + +A + L
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 40
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 34.2 bits (77), Expect = 0.011
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYG 40
I+L G GK+ I +C+ + + +L
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPL 45
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 34.2 bits (77), Expect = 0.013
Identities = 25/136 (18%), Positives = 38/136 (27%), Gaps = 3/136 (2%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
I + G PG GK + + F +SA L G L +
Sbjct: 11 IFVLGGPGAGKGTQCEKLVKDYS--FVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIV 68
Query: 61 IFIDEIDSLLCQRSDQENE-TSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAA 119
+ L SD + L F +D A + + D+V D
Sbjct: 69 PQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIML 128
Query: 120 RRRLVKRLYIPLPDEQ 135
R L + D+
Sbjct: 129 ERLLERGKTSGRSDDN 144
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 33.9 bits (77), Expect = 0.017
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 176 CREASLGPVRSIDLSRIDALDVRPISIDDFRDALKTVRPSVCQADFVHQPSIIFIDEIDS 235
CRE G R +DL IDA ++D RD L V+ A + + IDE+
Sbjct: 75 CREIEQG--RFVDLIEIDAASR--TKVEDTRDLLDNVQ----YAPARGRFKVYLIDEVHM 126
Query: 236 L 236
L
Sbjct: 127 L 127
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 33.0 bits (74), Expect = 0.024
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI 29
I+ G G+GK+ + + +A F
Sbjct: 3 IVFIGFMGSGKSTLARALAKDLDLVFLDS 31
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 33.0 bits (74), Expect = 0.025
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWY 39
++L GPPG GK + + ++ +
Sbjct: 5 MVLIGPPGAGKGTQAPNLQERFH--AAHLATGDMLRSQI 41
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 33.2 bits (74), Expect = 0.027
Identities = 15/53 (28%), Positives = 18/53 (33%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVA 53
+FG TGKT I +A C+ EG L AVA
Sbjct: 26 TEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVA 78
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 33.2 bits (74), Expect = 0.030
Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+LL+GP GTGK + + K L V+S + I
Sbjct: 36 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRK--LELNVVSSPYHLEI 93
Query: 61 IFIDE 65
D
Sbjct: 94 TPSDM 98
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 32.3 bits (72), Expect = 0.043
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28
+L G G+GK+ + VA Q A F
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQLHAAFLD 36
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 32.4 bits (72), Expect = 0.045
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27
I L G +GK I + +
Sbjct: 9 IFLTGYMNSGKDAIARALQVTLNQQGG 35
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 32.3 bits (72), Expect = 0.046
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28
+ L G G GKT + +
Sbjct: 22 VWLTGLSGAGKTTVSMALEEYLVCHGIP 49
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 32.4 bits (72), Expect = 0.048
Identities = 4/28 (14%), Positives = 9/28 (32%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28
+L+ PG G + ++
Sbjct: 27 LLIQALPGMGDDALIYALSRYLLCQQPQ 54
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 31.8 bits (71), Expect = 0.070
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTL 34
++L G PG GK + + A IS +
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAAYG--IPHISTGDM 34
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 31.9 bits (71), Expect = 0.073
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWY 39
+ + G PG+GK + + +SA L +
Sbjct: 9 VFVLGGPGSGKGTQCANIVRDFG--WVHLSAGDLLRQEQ 45
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase,
BchI {Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 32.2 bits (72), Expect = 0.084
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 1 ILLFGPPGTGKTLIGKCVAA 20
+L+FG GTGK+ + +AA
Sbjct: 31 VLVFGDRGTGKSTAVRALAA 50
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 31.3 bits (70), Expect = 0.089
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI 29
+ G PG+GK + + +
Sbjct: 9 AAIMGAPGSGKGTVSSRITKHFELKHLSS 37
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 31.5 bits (70), Expect = 0.098
Identities = 15/138 (10%), Positives = 34/138 (24%), Gaps = 3/138 (2%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
I + G PG+GK + + + T G + + P
Sbjct: 11 IFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLE 70
Query: 61 IFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAAR 120
+D + + + D L + + + + + +
Sbjct: 71 TVLDMLRDAMVAKVDTSK---GFLIDGYPREVKQGEEFERKIGQPTLLLYVDAGPETMTK 127
Query: 121 RRLVKRLYIPLPDEQARC 138
R L + D+
Sbjct: 128 RLLKRGETSGRVDDNEET 145
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 31.7 bits (70), Expect = 0.10
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGE 41
+L+GPPG GKT VA + +AS + SK
Sbjct: 55 AMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLN 95
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 31.4 bits (70), Expect = 0.11
Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFA 51
+++ G P +GK + + + + ISA L G + +
Sbjct: 6 VMISGAPASGKGTQCELIKTKYQ--LAHISAGDLLRAEIAAGSENGKRAKE 54
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 31.0 bits (69), Expect = 0.11
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+LL GPPG GK +A + IS L + E + A + +
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLG--IPQISTGELFRRNI--EEGTKLGVEAKRYLDAGDL 58
Query: 61 IFIDEIDSLLCQRSDQEN 78
+ D + L+ R + +
Sbjct: 59 VPSDLTNELVDDRLNNPD 76
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 31.6 bits (70), Expect = 0.12
Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 12/113 (10%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVAS------ 54
+FG G+GKT + +A + + E + +A
Sbjct: 39 TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDP 98
Query: 55 ------VHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDD 101
++ + L+ Q D+ E + L+ +D ++
Sbjct: 99 DEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRS 151
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 30.7 bits (68), Expect = 0.15
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCIS 30
I+L G P GK + + +
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKYGIPQISTG 32
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 251
Score = 31.2 bits (69), Expect = 0.16
Identities = 11/50 (22%), Positives = 15/50 (30%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALF 50
LFG TGK+ + +A C+ EG L
Sbjct: 37 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV 86
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 31.3 bits (70), Expect = 0.16
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKW---YGEGEKMVRALF-AVASVH 56
ILL GP G+GKTL+ + +A A++LT + R L + +V
Sbjct: 71 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 130
Query: 57 --QPSIIFIDEID 67
Q I+FIDEID
Sbjct: 131 KAQKGIVFIDEID 143
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 30.5 bits (67), Expect = 0.16
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKM 45
IL G PG+GK+ + A+ + I+ E+
Sbjct: 5 ILTIGCPGSGKSTWAREFIAKNPGFYN-INRDDYRQSIMAHEERD 48
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 30.6 bits (68), Expect = 0.19
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTL 34
I+L G PG GK + + IS +
Sbjct: 3 IVLMGLPGAGKGTQADRIVEKYG--TPHISTGDM 34
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 30.4 bits (67), Expect = 0.19
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27
++ GP G GK+ K +AAQ + +
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAY 31
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 30.3 bits (67), Expect = 0.20
Identities = 13/131 (9%), Positives = 33/131 (25%), Gaps = 11/131 (8%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTL---------TSKWYGEGEKMVRALFA 51
+ + G PG GK + + + +SA L + + +
Sbjct: 4 VFVLGGPGAGKGTQCARIVEKYG--YTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIV 61
Query: 52 VASVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNR 111
+ + + + ++ + L + D+ V+
Sbjct: 62 PVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCN 121
Query: 112 PQELDEAARRR 122
+ E R
Sbjct: 122 NEICIERCLER 132
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 30.3 bits (67), Expect = 0.25
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCI 29
+L GPPG GK +A
Sbjct: 6 AVLLGPPGAGKGTQAPKLAKNFCVCHLAT 34
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 30.5 bits (67), Expect = 0.25
Identities = 19/151 (12%), Positives = 42/151 (27%), Gaps = 1/151 (0%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVH-QPS 59
FG TGKT + + + E L +A
Sbjct: 40 TEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDH 99
Query: 60 IIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAA 119
+D + S+ + E + +F L D ++ + + + A
Sbjct: 100 DAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAE 159
Query: 120 RRRLVKRLYIPLPDEQARCEIVTKLLRNITN 150
R++ + ++ L + + +T
Sbjct: 160 RQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 190
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 30.3 bits (67), Expect = 0.27
Identities = 11/67 (16%), Positives = 17/67 (25%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
IL G GTGKTL+ A + + ++
Sbjct: 29 ILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNL 88
Query: 61 IFIDEID 67
+ I
Sbjct: 89 LKIVCAY 95
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 30.0 bits (66), Expect = 0.30
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWY 39
++L GP GK+ + +C+ + F +SA+T +
Sbjct: 5 VVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPG 43
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 29.9 bits (66), Expect = 0.30
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATF-FCISAST 33
++L GP G GK+ + K + + + F F +S +T
Sbjct: 3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTT 36
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 30.1 bits (66), Expect = 0.31
Identities = 15/73 (20%), Positives = 26/73 (35%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+L +GPPGTGKT + + S + G +VR + S
Sbjct: 36 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSK 95
Query: 61 IFIDEIDSLLCQR 73
++++ C
Sbjct: 96 PSKHDLENYPCPP 108
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 29.7 bits (65), Expect = 0.43
Identities = 6/22 (27%), Positives = 7/22 (31%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQC 22
G G+GKT I
Sbjct: 37 TEFAGVFGSGKTQIMHQSCVNL 58
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 29.2 bits (64), Expect = 0.52
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKA 24
+ L GPPG GKT + + K+
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKS 27
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 29.1 bits (64), Expect = 0.59
Identities = 6/48 (12%), Positives = 13/48 (27%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRA 48
++ G PG GK+ + + + +R
Sbjct: 17 VVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQ 64
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 28.7 bits (63), Expect = 0.73
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATF-FCISAST 33
++L G G G+ I + + F + I +T
Sbjct: 6 LVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTT 39
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 29.3 bits (65), Expect = 0.77
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 13/83 (15%)
Query: 1 ILLFGPPGTGKTLI----------GKCVAAQCKATFFCISASTLTSKWYGEGE---KMVR 47
+L G PG GKT I G + +L + GE ++
Sbjct: 46 PVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKA 105
Query: 48 ALFAVASVHQPSIIFIDEIDSLL 70
+ V I+FIDE+ +++
Sbjct: 106 VIQEVVQSQGEVILFIDELHTVV 128
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 28.1 bits (61), Expect = 1.2
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27
I + GP G GK + K +A +
Sbjct: 6 ITIDGPSGAGKGTLCKAMAEALQWHLL 32
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor
Rho, ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 28.4 bits (63), Expect = 1.3
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCIS 30
L+ PP GKT++ + +A
Sbjct: 46 GLIVAPPKAGKTMLLQNIAQSIAYNHPDCV 75
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 27.3 bits (59), Expect = 1.4
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 1 ILLFGPPGTGKTLI 14
+L PG GKT
Sbjct: 10 TVLDFHPGAGKTRR 23
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 27.9 bits (61), Expect = 1.5
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLT 35
++ P G GK+ + + + +S S T
Sbjct: 5 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTT 39
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 27.6 bits (60), Expect = 1.6
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATF-FCISAST 33
I++ GP GTGK+ + K + A+ +F F +S++T
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTT 37
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/104 (11%), Positives = 26/104 (25%), Gaps = 15/104 (14%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
L P G GK+++ A + ++ P+
Sbjct: 32 GALVSPGGAGKSML---------ALQLAAQIAGGPDLLEVGELPTGPVIY------LPAE 76
Query: 61 IFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVL 104
I L + R+ + L+ +L + +
Sbjct: 77 DPPTAIHHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAP 120
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 27.8 bits (61), Expect = 1.7
Identities = 25/139 (17%), Positives = 38/139 (27%), Gaps = 18/139 (12%)
Query: 1 ILLFGPPGTGKT-LIGKC----------VAAQCKATF-------FCISASTLTSKWYGEG 42
+L+ G G GKT I K V TF L+
Sbjct: 9 VLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGP 68
Query: 43 EKMVRALFAVASVHQPSIIFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDL 102
E A A +V D + R ++ LK ++
Sbjct: 69 EGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEV 128
Query: 103 VLVIGATNRPQELDEAARR 121
LV+ A L++A +
Sbjct: 129 WLVLDAVTGQNGLEQAKKF 147
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 27.6 bits (60), Expect = 1.8
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27
+++ G PG G T + +
Sbjct: 4 VVVTGVPGVGSTTSSQLAMDNLRKEGV 30
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 27.1 bits (59), Expect = 2.0
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 1 ILLFGPPGTGKTLIG-KCVAAQCKATFFCISASTLTSKWY 39
L P G+GK+ AAQ + T +
Sbjct: 11 AHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFG 50
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 27.7 bits (60), Expect = 2.0
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQC 22
L+ G GTGKTL
Sbjct: 29 TLVSGTSGTGKTLFSIQFLYNG 50
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 27.3 bits (59), Expect = 2.1
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27
++ G PG GK+ + V
Sbjct: 4 GIVTGIPGVGKSTVLAKVKEILDNQGI 30
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 27.4 bits (60), Expect = 2.1
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 1 ILLFGPPGTGK-TLIGKCVAAQCK 23
I+L G GTGK T GK +A K
Sbjct: 15 IMLVGVQGTGKATTAGK-LAYFYK 37
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 227
Score = 27.4 bits (59), Expect = 2.3
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKA-----TFFCISASTLTSKWYGEGEKMVRALFAVASV 55
+L +GPPGTGKT +A + ++AS + A
Sbjct: 38 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFS 97
Query: 56 HQPSIIFIDEIDSLLCQ 72
+I +DE D++
Sbjct: 98 KGFKLIILDEADAMTNA 114
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 27.4 bits (60), Expect = 2.5
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 1 ILLFGPPGTGKT-LIGKCVAAQCK 23
L G G+GKT K +A K
Sbjct: 13 WFLVGLQGSGKTTTAAK-LALYYK 35
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 26.9 bits (58), Expect = 2.6
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKAT 25
I++ G PG GKT + K + +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKR 27
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 26.9 bits (58), Expect = 3.1
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKA 24
I++ G P GKT I K +
Sbjct: 5 IVMVGLPARGKTYISKKLTRYLNF 28
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 27.0 bits (58), Expect = 3.4
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 1 ILLFGPPGTGKT--LIGKCV--AAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVH 56
L+ G+GKT + K C I+A T T+K E ++ V
Sbjct: 17 CLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEAR 76
Query: 57 QPSIIFIDEI 66
I +
Sbjct: 77 GLMISTFHTL 86
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 26.9 bits (59), Expect = 3.4
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 1 ILLFGPPGTGK-TLIGKCVAAQCK 23
IL+ G G GK T IGK +A Q +
Sbjct: 12 ILMVGVNGVGKTTTIGK-LARQFE 34
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 26.6 bits (58), Expect = 3.5
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 1 ILLFGPPGTGK-TLIGKCVAAQCK 23
I++ G GTGK T GK +A
Sbjct: 14 IMVVGVNGTGKTTSCGK-LAKMFV 36
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 26.9 bits (59), Expect = 3.6
Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 12/104 (11%)
Query: 37 KWYGEGEKMVRALFAVASVHQPSIIFIDE----IDSLLCQRSDQENETSRRLKTEFLIS- 91
Y +G + L A A + P + +DE +D L + + + + + L+S
Sbjct: 132 STYSKGMVR-KLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSS 190
Query: 92 --LDGASTLDDDLVLV----IGATNRPQELDEAARRRLVKRLYI 129
+ L D + L+ I T +EL E + + ++ ++
Sbjct: 191 HNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFE 234
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase),
helicase domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 26.5 bits (57), Expect = 4.6
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQC 22
I++ G GK+ + A Q
Sbjct: 38 IMVTSGSGMGKSTFVRQQALQW 59
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 26.1 bits (56), Expect = 4.6
Identities = 26/160 (16%), Positives = 41/160 (25%), Gaps = 7/160 (4%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSI 60
+ GTGKT + K + A M S ++
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGI------RPGLIKHTHHDMDVDKPGKDS-YELRK 57
Query: 61 IFIDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAAR 120
+ QR ET + + T DL+LV G + R
Sbjct: 58 AGAAQTIVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFR 117
Query: 121 RRLVKRLYIPLPDEQARCEIVTKLLRNITNSLTVDDIEEV 160
R + D L L ++D+E +
Sbjct: 118 DGAGHRPEELVIDRHVIAVASDVPLNLDVALLDINDVEGL 157
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 26.5 bits (57), Expect = 4.7
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28
+++ G PG GKT C+A + +
Sbjct: 39 MIISGMPGIGKTTSVHCLAHELLGRSYA 66
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId:
1313]}
Length = 223
Score = 26.5 bits (57), Expect = 4.8
Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 13/99 (13%)
Query: 5 GPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFID 64
GP +GK+ + K +A T+ + M RA +A +Q + ++
Sbjct: 10 GPASSGKSTVAKIIAKDFGFTYL-------------DTGAMYRAATYMALKNQLGVEEVE 56
Query: 65 EIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLV 103
+ +LL Q + + F+ +D + ++ V
Sbjct: 57 ALLALLDQHPISFGRSETGDQLVFVGDVDITHPIRENEV 95
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 16 KCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIFIDEIDSLL 70
K A F + + K + LFA+ S +DE+D+ L
Sbjct: 317 KYHATPPLKRFKDMEYLSGGEKTV----AALALLFAINSYQPSPFFVLDEVDAAL 367
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId:
5076]}
Length = 208
Score = 25.6 bits (55), Expect = 7.7
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFFC 28
I L G +GK+ + + Q
Sbjct: 27 IWLTGLSASGKSTLAVELEHQLVRDRRV 54
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 25.8 bits (56), Expect = 7.9
Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 15/121 (12%)
Query: 3 LFGPPGTGKTLIGKCVAAQCKATFFCISASTLTSKWYGEGEKMVRALFAVASVHQPSIIF 62
+ GP G GKTL + +A I G+ + + I F
Sbjct: 31 ILGPTGAGKTLFLELIAGFHVPDSGRI-------LLDGKDVTDLSP-------EKHDIAF 76
Query: 63 IDEIDSLLCQRSDQENETSRRLKTEFLISLDGASTLDDDLVLVIGATNRPQELDEAARRR 122
+ + SL + ++N ++ + + DL + P L ++R
Sbjct: 77 VYQNYSLFPHMNVKKN-LEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQR 135
Query: 123 L 123
+
Sbjct: 136 V 136
>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId:
5759]}
Length = 77
Score = 24.2 bits (52), Expect = 8.5
Identities = 7/41 (17%), Positives = 18/41 (43%)
Query: 138 CEIVTKLLRNITNSLTVDDIEEVGRMTTDFSGADMASLCRE 178
C + L N+ + D +++ + + +A+LC +
Sbjct: 8 CTGLINTLENLLTTKGADKVKDYISSLCNKASGFIATLCTK 48
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 25.5 bits (56), Expect = 8.9
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKAT 25
++ GP TGK+ G +
Sbjct: 56 LVFCGPANTGKSYFGMSFIHFIQGA 80
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
TrwB {Escherichia coli [TaxId: 562]}
Length = 433
Score = 25.7 bits (55), Expect = 9.5
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQC 22
+L+ G GTGK+++ + +A
Sbjct: 53 LLVNGATGTGKSVLLRELAYTG 74
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 25.4 bits (55), Expect = 9.7
Identities = 3/27 (11%), Positives = 8/27 (29%)
Query: 1 ILLFGPPGTGKTLIGKCVAAQCKATFF 27
IL+ G + + + +
Sbjct: 18 ILINGEDLSYPREVSLELPEYVEKFPP 44
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.385
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,232,886
Number of extensions: 57162
Number of successful extensions: 375
Number of sequences better than 10.0: 1
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 120
Length of query: 343
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 257
Effective length of database: 1,226,816
Effective search space: 315291712
Effective search space used: 315291712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)