Query psy4539
Match_columns 84
No_of_seqs 136 out of 1045
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 19:42:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0730|consensus 99.6 3.7E-16 7.9E-21 123.4 4.5 65 15-83 405-470 (693)
2 KOG0733|consensus 99.5 4.2E-15 9.1E-20 117.5 4.7 68 12-83 479-547 (802)
3 KOG0738|consensus 99.5 2.6E-14 5.7E-19 108.6 4.4 58 26-83 190-247 (491)
4 COG1222 RPT1 ATP-dependent 26S 99.4 2.4E-13 5.2E-18 102.2 3.6 49 35-83 138-187 (406)
5 KOG0739|consensus 99.4 2.6E-13 5.6E-18 101.1 3.4 54 30-83 115-168 (439)
6 KOG0736|consensus 99.2 9.9E-12 2.2E-16 100.3 4.2 64 9-75 636-699 (953)
7 KOG0735|consensus 99.1 1.2E-10 2.6E-15 93.8 5.9 67 13-83 635-703 (952)
8 KOG0726|consensus 99.0 1.4E-10 3E-15 86.5 3.4 45 39-83 176-221 (440)
9 TIGR01243 CDC48 AAA family ATP 99.0 2.4E-10 5.3E-15 91.3 4.6 68 12-83 421-489 (733)
10 KOG0652|consensus 99.0 3.8E-10 8.2E-15 83.4 3.9 62 22-83 145-207 (424)
11 KOG0727|consensus 98.9 3.4E-10 7.4E-15 83.3 2.1 58 26-83 133-191 (408)
12 KOG0729|consensus 98.9 8.7E-10 1.9E-14 81.7 3.9 47 37-83 166-213 (435)
13 KOG0740|consensus 98.9 1.3E-09 2.9E-14 83.3 4.6 63 21-83 126-188 (428)
14 PTZ00454 26S protease regulato 98.9 1.5E-09 3.4E-14 82.1 3.5 49 35-83 132-181 (398)
15 COG0464 SpoVK ATPases of the A 98.8 4.3E-09 9.3E-14 80.4 5.2 69 9-83 209-278 (494)
16 KOG0737|consensus 98.7 8.8E-09 1.9E-13 77.7 3.3 44 40-83 84-129 (386)
17 KOG0728|consensus 98.7 1.7E-08 3.7E-13 74.4 3.8 49 35-83 134-183 (404)
18 TIGR03689 pup_AAA proteasome A 98.6 3.5E-08 7.6E-13 77.0 4.0 49 35-83 169-218 (512)
19 KOG0732|consensus 98.6 3.5E-08 7.6E-13 81.9 3.0 44 40-83 257-301 (1080)
20 PRK03992 proteasome-activating 98.5 6.7E-08 1.5E-12 72.6 3.0 48 36-83 119-167 (389)
21 PTZ00361 26 proteosome regulat 98.4 1.3E-07 2.8E-12 72.6 3.2 47 37-83 172-219 (438)
22 TIGR01242 26Sp45 26S proteasom 98.3 4.4E-07 9.5E-12 67.2 2.9 48 36-83 110-158 (364)
23 KOG0731|consensus 98.3 7.8E-07 1.7E-11 72.2 4.1 42 41-83 304-346 (774)
24 KOG0734|consensus 98.1 1.9E-06 4.2E-11 68.5 3.2 41 42-83 298-339 (752)
25 KOG0733|consensus 98.1 3.2E-06 7E-11 67.9 3.7 42 41-83 183-225 (802)
26 KOG0651|consensus 98.0 5.3E-06 1.1E-10 62.3 3.2 58 26-83 110-168 (388)
27 TIGR01243 CDC48 AAA family ATP 98.0 5E-06 1.1E-10 66.8 3.2 43 41-83 171-214 (733)
28 TIGR01241 FtsH_fam ATP-depende 97.5 6.3E-05 1.4E-09 58.0 3.0 43 40-83 47-90 (495)
29 COG0465 HflB ATP-dependent Zn 97.5 0.00011 2.3E-09 58.7 4.1 43 40-83 142-185 (596)
30 KOG0730|consensus 96.8 0.00098 2.1E-08 53.9 3.1 40 43-83 180-220 (693)
31 CHL00176 ftsH cell division pr 96.6 0.0019 4E-08 52.0 3.1 41 42-83 177-218 (638)
32 CHL00195 ycf46 Ycf46; Provisio 94.5 0.035 7.6E-07 43.5 2.9 39 42-83 222-261 (489)
33 CHL00181 cbbX CbbX; Provisiona 92.6 0.09 2E-06 38.3 2.2 34 47-81 22-56 (287)
34 COG1223 Predicted ATPase (AAA+ 90.6 0.2 4.2E-06 37.6 2.2 35 41-76 114-148 (368)
35 PRK10733 hflB ATP-dependent me 88.3 0.4 8.7E-06 38.6 2.6 41 42-83 146-187 (644)
36 TIGR02880 cbbX_cfxQ probable R 87.8 0.45 9.7E-06 34.5 2.3 29 49-78 23-51 (284)
37 TIGR02881 spore_V_K stage V sp 79.5 1.5 3.3E-05 30.9 2.1 24 47-70 5-28 (261)
38 PF09336 Vps4_C: Vps4 C termin 70.3 2.2 4.7E-05 24.5 0.8 19 13-31 29-47 (62)
39 PRK07940 DNA polymerase III su 63.8 3 6.5E-05 31.9 0.6 24 46-69 3-26 (394)
40 PF14842 FliG_N: FliG N-termin 49.5 7.7 0.00017 24.2 0.7 43 21-63 43-85 (108)
41 PRK14963 DNA polymerase III su 36.1 17 0.00037 28.7 0.8 27 40-66 6-32 (504)
42 KOG0989|consensus 34.0 26 0.00056 26.8 1.5 26 41-66 29-54 (346)
43 TIGR02397 dnaX_nterm DNA polym 32.5 29 0.00063 25.0 1.5 26 41-66 7-32 (355)
44 PF06820 Phage_fiber_C: Putati 31.7 13 0.00029 21.5 -0.3 14 41-54 51-64 (64)
45 KOG4009|consensus 31.3 29 0.00064 23.4 1.3 21 42-62 114-134 (156)
46 TIGR00635 ruvB Holliday juncti 30.9 21 0.00046 25.3 0.6 21 46-66 2-22 (305)
47 COG2812 DnaX DNA polymerase II 30.6 51 0.0011 26.4 2.7 36 41-76 9-45 (515)
48 PRK14961 DNA polymerase III su 30.6 29 0.00063 25.8 1.3 26 41-66 9-34 (363)
49 PRK05564 DNA polymerase III su 29.2 37 0.00081 24.5 1.6 21 46-66 2-22 (313)
50 PRK14965 DNA polymerase III su 28.1 31 0.00068 27.6 1.1 26 41-66 9-34 (576)
51 PRK06305 DNA polymerase III su 26.2 40 0.00087 26.1 1.4 25 42-66 11-35 (451)
52 PRK14958 DNA polymerase III su 24.2 45 0.00097 26.4 1.4 26 41-66 9-34 (509)
53 PRK05563 DNA polymerase III su 24.0 44 0.00096 26.7 1.3 26 41-66 9-34 (559)
54 PF01078 Mg_chelatase: Magnesi 24.0 71 0.0015 22.5 2.2 20 47-66 2-21 (206)
55 PF15061 DUF4538: Domain of un 23.9 53 0.0011 18.8 1.3 22 56-77 18-39 (58)
56 COG0079 HisC Histidinol-phosph 23.4 79 0.0017 23.7 2.5 25 4-28 152-176 (356)
57 PRK06647 DNA polymerase III su 23.0 46 0.00099 26.7 1.2 26 41-66 9-34 (563)
58 PRK14970 DNA polymerase III su 22.5 59 0.0013 23.9 1.6 26 41-66 10-35 (367)
59 KOG0743|consensus 22.3 89 0.0019 24.8 2.6 38 45-82 198-235 (457)
60 PF08195 TRI9: TRI9 protein; 21.9 46 0.00099 17.6 0.7 27 38-64 10-36 (43)
61 PRK14962 DNA polymerase III su 21.8 46 0.001 26.1 1.0 27 41-67 7-33 (472)
62 PRK14952 DNA polymerase III su 21.2 53 0.0011 26.6 1.2 26 41-66 6-31 (584)
63 PF05673 DUF815: Protein of un 21.0 80 0.0017 23.0 2.0 25 41-65 20-44 (249)
No 1
>KOG0730|consensus
Probab=99.62 E-value=3.7e-16 Score=123.41 Aligned_cols=65 Identities=34% Similarity=0.621 Sum_probs=62.8
Q ss_pred CHHHHHHHhccCChhHHHHHHhhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 15 EPELEDERYKGIDKVMIERIENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 15 ~~~~~~~al~~~~ps~~~~i~~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
+.++|..|+..+.|++ +|+++.+.|+|+|+|||||+++|++|+++|+||++||+.|.++| +||||
T Consensus 405 ~~~~~~~A~~~i~psa----~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkG 470 (693)
T KOG0730|consen 405 TLEIFQEALMGIRPSA----LREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKG 470 (693)
T ss_pred hHHHHHHHHhcCCchh----hhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCce
Confidence 5679999999999999 79999999999999999999999999999999999999999999 99998
No 2
>KOG0733|consensus
Probab=99.55 E-value=4.2e-15 Score=117.49 Aligned_cols=68 Identities=28% Similarity=0.414 Sum_probs=64.8
Q ss_pred CCCCHHHHHHHhccCChhHHHHHHhhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 12 KELEPELEDERYKGIDKVMIERIENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 12 ~~~~~~~~~~al~~~~ps~~~~i~~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
-.+..+||++|+..++|++ +|+.+...|+|+|+|||||++++.+|+.+|+||++||++|+++| .+|.|
T Consensus 479 L~i~~eDF~~Al~~iQPSa----kREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsG 547 (802)
T KOG0733|consen 479 LSIKFEDFEEALSKIQPSA----KREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSG 547 (802)
T ss_pred ceecHHHHHHHHHhcCcch----hcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCc
Confidence 3468889999999999999 89999999999999999999999999999999999999999999 88887
No 3
>KOG0738|consensus
Probab=99.48 E-value=2.6e-14 Score=108.55 Aligned_cols=58 Identities=40% Similarity=0.788 Sum_probs=55.3
Q ss_pred CChhHHHHHHhhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCCCCCCC
Q psy4539 26 IDKVMIERIENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLRRPPKD 83 (84)
Q Consensus 26 ~~ps~~~~i~~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~~ppkG 83 (84)
++.++++.+.++|+.+.|+|+|+||+||+++|+.|+|+|.+|+++|++|+++.+||||
T Consensus 190 ~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkg 247 (491)
T KOG0738|consen 190 YDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKG 247 (491)
T ss_pred chHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccce
Confidence 4557889999999999999999999999999999999999999999999999999998
No 4
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.4e-13 Score=102.22 Aligned_cols=49 Identities=35% Similarity=0.598 Sum_probs=45.5
Q ss_pred HhhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 35 ENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 35 ~~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
.-.-+.+.|+++|+|||||++++++|+|+|++||+||++|+.+| .||||
T Consensus 138 ~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKG 187 (406)
T COG1222 138 SVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKG 187 (406)
T ss_pred heeeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCc
Confidence 34446789999999999999999999999999999999999999 99998
No 5
>KOG0739|consensus
Probab=99.38 E-value=2.6e-13 Score=101.08 Aligned_cols=54 Identities=31% Similarity=0.661 Sum_probs=49.1
Q ss_pred HHHHHHhhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCCCCCCC
Q psy4539 30 MIERIENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLRRPPKD 83 (84)
Q Consensus 30 ~~~~i~~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~~ppkG 83 (84)
+..+++..|+.+.|+|+|+||+||+.+|++|+|+|++|+++|++|.+-+.||||
T Consensus 115 Lr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pwrg 168 (439)
T KOG0739|consen 115 LRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRG 168 (439)
T ss_pred HHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCccee
Confidence 344457778889999999999999999999999999999999999998899997
No 6
>KOG0736|consensus
Probab=99.21 E-value=9.9e-12 Score=100.31 Aligned_cols=64 Identities=28% Similarity=0.455 Sum_probs=55.7
Q ss_pred CCCCCCCHHHHHHHhccCChhHHHHHHhhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHh
Q psy4539 9 PRGKELEPELEDERYKGIDKVMIERIENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFT 75 (84)
Q Consensus 9 ~~~~~~~~~~~~~al~~~~ps~~~~i~~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~ 75 (84)
+.+.-++.+||.+|+...+.+.++.|- ..+.|+|+|+|||||+++|++|.++|-+||+||++|.
T Consensus 636 ~~~~~l~~edf~kals~~~~~fs~aiG---APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfs 699 (953)
T KOG0736|consen 636 AAGFLLTEEDFDKALSRLQKEFSDAIG---APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFS 699 (953)
T ss_pred cccceecHHHHHHHHHHHHHhhhhhcC---CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhh
Confidence 456788999999999998888743222 4589999999999999999999999999999999996
No 7
>KOG0735|consensus
Probab=99.11 E-value=1.2e-10 Score=93.82 Aligned_cols=67 Identities=31% Similarity=0.479 Sum_probs=58.3
Q ss_pred CCCHHHHHHHhccCChhHHHHHHhhhhc-CCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 13 ELEPELEDERYKGIDKVMIERIENEIMD-QGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 13 ~~~~~~~~~al~~~~ps~~~~i~~~i~~-~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
-++.++|.++|+.|.|.+ +|.+.. +..+++|+||||+.++|+.|+|+++||.+||++|.... +-++|
T Consensus 635 lltke~f~ksL~~F~P~a----LR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~g 703 (952)
T KOG0735|consen 635 LLTKELFEKSLKDFVPLA----LRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTG 703 (952)
T ss_pred cchHHHHHHHHHhcChHH----hhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccc
Confidence 679999999999999999 677654 44569999999999999999999999999999998765 54444
No 8
>KOG0726|consensus
Probab=99.04 E-value=1.4e-10 Score=86.54 Aligned_cols=45 Identities=29% Similarity=0.609 Sum_probs=43.1
Q ss_pred hcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 39 MDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 39 ~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
+.+.|.-+|.|||||+.++++|+|+|++||.||++|+.+| +||||
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKG 221 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKG 221 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCe
Confidence 4578999999999999999999999999999999999999 99998
No 9
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.03 E-value=2.4e-10 Score=91.26 Aligned_cols=68 Identities=31% Similarity=0.555 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHhccCChhHHHHHHhhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 12 KELEPELEDERYKGIDKVMIERIENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 12 ~~~~~~~~~~al~~~~ps~~~~i~~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
..++..+|.+|++.+.|+. ++++..+.|+++|+||||++.+|+.|++.|.||++||++|++++ ++|+|
T Consensus 421 ~~v~~~df~~Al~~v~ps~----~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~g 489 (733)
T TIGR01243 421 LKVTMKDFMEALKMVEPSA----IREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKG 489 (733)
T ss_pred ccccHHHHHHHHhhccccc----cchhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCce
Confidence 4578899999999999998 67878889999999999999999999999999999999999998 88876
No 10
>KOG0652|consensus
Probab=98.99 E-value=3.8e-10 Score=83.38 Aligned_cols=62 Identities=29% Similarity=0.434 Sum_probs=55.4
Q ss_pred HhccCChhHHHHHHhhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 22 RYKGIDKVMIERIENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 22 al~~~~ps~~~~i~~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
-|..+++....+|....+.+.|.-+|+|||||+.++++|-|+|.+|+.|++-|..+| +||||
T Consensus 145 iletLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKG 207 (424)
T KOG0652|consen 145 ILETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKG 207 (424)
T ss_pred ehhcCChhhhhhcceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCc
Confidence 455667777766677777899999999999999999999999999999999999999 99998
No 11
>KOG0727|consensus
Probab=98.94 E-value=3.4e-10 Score=83.31 Aligned_cols=58 Identities=26% Similarity=0.441 Sum_probs=48.6
Q ss_pred CChhHHHHHHhhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 26 IDKVMIERIENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 26 ~~ps~~~~i~~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
++|.+.+-|.-..-.+.|+|+|.||||++-+|++++|+|++|+.|.++|+.+| .||||
T Consensus 133 lppeadssi~ml~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprg 191 (408)
T KOG0727|consen 133 LPPEADSSISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRG 191 (408)
T ss_pred cCCcccccccccCCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcc
Confidence 35555333333334578999999999999999999999999999999999999 99998
No 12
>KOG0729|consensus
Probab=98.93 E-value=8.7e-10 Score=81.69 Aligned_cols=47 Identities=30% Similarity=0.586 Sum_probs=44.3
Q ss_pred hhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 37 EIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 37 ~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
.-+.+.|+|+|+||||+.++++.|+|.|++||.||+-|-.+| .||||
T Consensus 166 m~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkg 213 (435)
T KOG0729|consen 166 MQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKG 213 (435)
T ss_pred EEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCc
Confidence 335689999999999999999999999999999999999999 99998
No 13
>KOG0740|consensus
Probab=98.91 E-value=1.3e-09 Score=83.33 Aligned_cols=63 Identities=51% Similarity=0.879 Sum_probs=59.8
Q ss_pred HHhccCChhHHHHHHhhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCCCCCCC
Q psy4539 21 ERYKGIDKVMIERIENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLRRPPKD 83 (84)
Q Consensus 21 ~al~~~~ps~~~~i~~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~~ppkG 83 (84)
+.++.++......+.++|....++|.|+||+|++.+|+.|+|+|+||+..|++|.+++.|+||
T Consensus 126 ~~~~~~~~~~~~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rg 188 (428)
T KOG0740|consen 126 EKVKEVDETLIEGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRG 188 (428)
T ss_pred hhhccccchhhHHHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccch
Confidence 568889999999999999999999999999999999999999999999999999999888876
No 14
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.87 E-value=1.5e-09 Score=82.07 Aligned_cols=49 Identities=31% Similarity=0.601 Sum_probs=44.2
Q ss_pred HhhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 35 ENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 35 ~~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
....+.+.|+++|+||||++.+|+.|+++|.+|+.+|++|+.+| .||+|
T Consensus 132 ~~~~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkg 181 (398)
T PTZ00454 132 QLLQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRG 181 (398)
T ss_pred hhhcccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCce
Confidence 33345688999999999999999999999999999999999999 88886
No 15
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=4.3e-09 Score=80.44 Aligned_cols=69 Identities=32% Similarity=0.455 Sum_probs=61.2
Q ss_pred CCCCCCCHHHHHHHhccCChhHHHHHHhhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 9 PRGKELEPELEDERYKGIDKVMIERIENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 9 ~~~~~~~~~~~~~al~~~~ps~~~~i~~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
+....++..++.++++.+.++ +.+....+.++|+||||++.+|+.++++|.||++||++|.+.+ ++++|
T Consensus 209 ~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~g 278 (494)
T COG0464 209 GEYIGVTEDDFEEALKKVLPS------RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKG 278 (494)
T ss_pred cccccccHHHHHHHHHhcCcc------cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCe
Confidence 455667889999999999887 4556789999999999999999999999999999999999877 78776
No 16
>KOG0737|consensus
Probab=98.72 E-value=8.8e-09 Score=77.70 Aligned_cols=44 Identities=39% Similarity=0.751 Sum_probs=39.0
Q ss_pred cCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC--CCCCC
Q psy4539 40 DQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR--RPPKD 83 (84)
Q Consensus 40 ~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~--~ppkG 83 (84)
....+|+|+|||||+.+|++|+|.|++|+++|++|..-+ +|++|
T Consensus 84 p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kG 129 (386)
T KOG0737|consen 84 PSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKG 129 (386)
T ss_pred hhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCcc
Confidence 456689999999999999999999999999999996433 88887
No 17
>KOG0728|consensus
Probab=98.69 E-value=1.7e-08 Score=74.38 Aligned_cols=49 Identities=29% Similarity=0.479 Sum_probs=44.9
Q ss_pred HhhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 35 ENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 35 ~~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
.-..+.+.|+-+|+-||||+.++++++|.|++|.+||++|..+| ..|||
T Consensus 134 sLMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKG 183 (404)
T KOG0728|consen 134 SLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKG 183 (404)
T ss_pred HHHhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcc
Confidence 33446789999999999999999999999999999999999999 88887
No 18
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.61 E-value=3.5e-08 Score=77.01 Aligned_cols=49 Identities=29% Similarity=0.650 Sum_probs=44.4
Q ss_pred HhhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 35 ENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 35 ~~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
...+..+.|+++|+||||++.+++.|++.|.+|+.||++|+.+| .||+|
T Consensus 169 ~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~G 218 (512)
T TIGR03689 169 EDLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKG 218 (512)
T ss_pred hcceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcc
Confidence 34456688999999999999999999999999999999999999 88887
No 19
>KOG0732|consensus
Probab=98.57 E-value=3.5e-08 Score=81.94 Aligned_cols=44 Identities=25% Similarity=0.631 Sum_probs=41.6
Q ss_pred cCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 40 DQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 40 ~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
.....+.|+|||||+.++..|+|+|.+||.||+.|..++ +||||
T Consensus 257 ~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrg 301 (1080)
T KOG0732|consen 257 SVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRG 301 (1080)
T ss_pred hhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcc
Confidence 346789999999999999999999999999999999999 99998
No 20
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.51 E-value=6.7e-08 Score=72.62 Aligned_cols=48 Identities=27% Similarity=0.554 Sum_probs=43.9
Q ss_pred hhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 36 NEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 36 ~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
+..+.+.|+++|+||||++.+++.|++.|.+|+.+|++|+.+| .+|+|
T Consensus 119 ~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~g 167 (389)
T PRK03992 119 AMEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKG 167 (389)
T ss_pred eeeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCc
Confidence 4445678999999999999999999999999999999999999 88886
No 21
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.45 E-value=1.3e-07 Score=72.59 Aligned_cols=47 Identities=28% Similarity=0.588 Sum_probs=43.0
Q ss_pred hhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 37 EIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 37 ~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
..+.+.|.++|+||||++.+++.|++++.+|+.+|++|+.+| .+|+|
T Consensus 172 ~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~g 219 (438)
T PTZ00361 172 MKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKG 219 (438)
T ss_pred cccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcE
Confidence 335678999999999999999999999999999999999999 88876
No 22
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.30 E-value=4.4e-07 Score=67.22 Aligned_cols=48 Identities=27% Similarity=0.579 Sum_probs=43.3
Q ss_pred hhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 36 NEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 36 ~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
+..+.+.|+++|+||||++.+++.|++.+.+|+.+|++|+.+| .+|+|
T Consensus 110 ~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~g 158 (364)
T TIGR01242 110 GMEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKG 158 (364)
T ss_pred cceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCce
Confidence 3345578999999999999999999999999999999999998 88876
No 23
>KOG0731|consensus
Probab=98.28 E-value=7.8e-07 Score=72.21 Aligned_cols=42 Identities=26% Similarity=0.521 Sum_probs=39.8
Q ss_pred CCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 41 QGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 41 ~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
....|.|+||+|++++|++|+|.|.+ |++|+.|..+| ++|||
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkG 346 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKG 346 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCc
Confidence 45569999999999999999999999 99999999999 99998
No 24
>KOG0734|consensus
Probab=98.13 E-value=1.9e-06 Score=68.45 Aligned_cols=41 Identities=37% Similarity=0.617 Sum_probs=39.3
Q ss_pred CCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 42 GKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 42 ~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
..+|+|+||-|++++|++|+|+|.| |+.|+.|.++| +-|||
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKG 339 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKG 339 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCc
Confidence 4589999999999999999999999 99999999999 99998
No 25
>KOG0733|consensus
Probab=98.08 E-value=3.2e-06 Score=67.86 Aligned_cols=42 Identities=31% Similarity=0.659 Sum_probs=40.0
Q ss_pred CCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 41 QGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 41 ~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
..+++.|.||||++....+|++.|.. ++||+.|..+| .||||
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprG 225 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRG 225 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCc
Confidence 45699999999999999999999999 99999999999 99998
No 26
>KOG0651|consensus
Probab=97.99 E-value=5.3e-06 Score=62.32 Aligned_cols=58 Identities=21% Similarity=0.487 Sum_probs=47.0
Q ss_pred CChhHHHHHHhhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 26 IDKVMIERIENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 26 ~~ps~~~~i~~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
+-|..++.+-........+++|+.|||+.++..+|+|.|++|+.+|++|.++| +||+|
T Consensus 110 ~lprevd~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg 168 (388)
T KOG0651|consen 110 GLPREVDLVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKG 168 (388)
T ss_pred ccchHHHHHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCce
Confidence 33444443333334456689999999999999999999999999999999999 99997
No 27
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.99 E-value=5e-06 Score=66.77 Aligned_cols=43 Identities=42% Similarity=0.738 Sum_probs=39.9
Q ss_pred CCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 41 QGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 41 ~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
..++++|+||||++.+++.|++.|.+|++||++|+.++ .+++|
T Consensus 171 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~g 214 (733)
T TIGR01243 171 KVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKG 214 (733)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCce
Confidence 35789999999999999999999999999999999998 88776
No 28
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.55 E-value=6.3e-05 Score=57.99 Aligned_cols=43 Identities=33% Similarity=0.595 Sum_probs=39.1
Q ss_pred cCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 40 DQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 40 ~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
.+.++++|+||+|++++|+.|++++.+ +++|+.|..++ .+|+|
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~g 90 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKG 90 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCc
Confidence 457899999999999999999999998 99999999888 88776
No 29
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00011 Score=58.69 Aligned_cols=43 Identities=28% Similarity=0.545 Sum_probs=40.1
Q ss_pred cCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 40 DQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 40 ~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
.....|+|.|++|.+++|++|.|.|.+ |+.|.-|..+| +-|||
T Consensus 142 ~~~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkG 185 (596)
T COG0465 142 EDQVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKG 185 (596)
T ss_pred ccccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccc
Confidence 346889999999999999999999999 99999999999 88887
No 30
>KOG0730|consensus
Probab=96.85 E-value=0.00098 Score=53.86 Aligned_cols=40 Identities=33% Similarity=0.674 Sum_probs=38.0
Q ss_pred CCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 43 KPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 43 p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
+.++ +++||+..+.+.++++|.+|++||.+|..+| +||+|
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg 220 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRG 220 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCC
Confidence 6677 8999999999999999999999999999999 99987
No 31
>CHL00176 ftsH cell division protein; Validated
Probab=96.60 E-value=0.0019 Score=51.96 Aligned_cols=41 Identities=34% Similarity=0.648 Sum_probs=37.1
Q ss_pred CCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 42 GKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 42 ~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
.+.++|+||+|++.+|+.|++.+.+ +++|+.|+.++ .+|+|
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~g 218 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKG 218 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCce
Confidence 4578999999999999999999888 99999999988 77776
No 32
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.48 E-value=0.035 Score=43.46 Aligned_cols=39 Identities=15% Similarity=0.125 Sum_probs=29.7
Q ss_pred CCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 42 GKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 42 ~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
.++++|+||||++.+|+.|++... .++..+..+| .+|||
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~---~~~~~~~~~gl~~pkG 261 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRST---SFSKQASNYGLPTPRG 261 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH---HhhHHHHhcCCCCCce
Confidence 468899999999999999998543 2345556677 77776
No 33
>CHL00181 cbbX CbbX; Provisional
Probab=92.56 E-value=0.09 Score=38.26 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=28.0
Q ss_pred eecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCC
Q psy4539 47 WDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPP 81 (84)
Q Consensus 47 w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~pp 81 (84)
+.+++|++.+|+.|+|.+.| +.++++++.+| .++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~ 56 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSS 56 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCC
Confidence 45799999999999999999 66778887776 444
No 34
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=90.62 E-value=0.2 Score=37.63 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=31.6
Q ss_pred CCCCcceecccCcHHHHHHHHHHHhhcccChHHHhc
Q psy4539 41 QGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTG 76 (84)
Q Consensus 41 ~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~ 76 (84)
..++++++||.|++++|+.-+-++.| |.+|+.|..
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~ 148 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGD 148 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHH-hhChHHhcc
Confidence 46889999999999999998888888 999999974
No 35
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=88.34 E-value=0.4 Score=38.60 Aligned_cols=41 Identities=29% Similarity=0.496 Sum_probs=34.9
Q ss_pred CCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 42 GKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 42 ~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
....+|+||+|++.+++.|.+.+.+ +.+|+.|..++ +.|+|
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~g 187 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKG 187 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCc
Confidence 3467899999999999999999998 78888888777 66665
No 36
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=87.81 E-value=0.45 Score=34.47 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=25.8
Q ss_pred cccCcHHHHHHHHHHHhhcccChHHHhcCC
Q psy4539 49 DIAGLTFAKQTIQEVIVWPMLRPDIFTGLR 78 (84)
Q Consensus 49 DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~ 78 (84)
+++|++.+|+.|++++.| +.+++.+.++|
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g 51 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLG 51 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhC
Confidence 589999999999999999 77888887766
No 37
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=79.48 E-value=1.5 Score=30.92 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=20.5
Q ss_pred eecccCcHHHHHHHHHHHhhcccC
Q psy4539 47 WDDIAGLTFAKQTIQEVIVWPMLR 70 (84)
Q Consensus 47 w~DIgGl~~~k~~L~e~v~~Pl~~ 70 (84)
.++++||+.+|+.|++.+.|+...
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~ 28 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN 28 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH
Confidence 367999999999999999997544
No 38
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=70.31 E-value=2.2 Score=24.48 Aligned_cols=19 Identities=16% Similarity=0.092 Sum_probs=16.4
Q ss_pred CCCHHHHHHHhccCChhHH
Q psy4539 13 ELEPELEDERYKGIDKVMI 31 (84)
Q Consensus 13 ~~~~~~~~~al~~~~ps~~ 31 (84)
.++.+||.+||+++.||..
T Consensus 29 ~it~~DF~~Al~~~kpSVs 47 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVS 47 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-
T ss_pred CCCHHHHHHHHHHcCCCCC
Confidence 4689999999999999874
No 39
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=63.82 E-value=3 Score=31.86 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=21.5
Q ss_pred ceecccCcHHHHHHHHHHHhhccc
Q psy4539 46 TWDDIAGLTFAKQTIQEVIVWPML 69 (84)
Q Consensus 46 ~w~DIgGl~~~k~~L~e~v~~Pl~ 69 (84)
.|++|.|++.+++.|+.++..+..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~ 26 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA 26 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc
Confidence 589999999999999999998753
No 40
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=49.55 E-value=7.7 Score=24.20 Aligned_cols=43 Identities=14% Similarity=0.208 Sum_probs=24.6
Q ss_pred HHhccCChhHHHHHHhhhhcCCCCcceecccCcHHHHHHHHHH
Q psy4539 21 ERYKGIDKVMIERIENEIMDQGKPVTWDDIAGLTFAKQTIQEV 63 (84)
Q Consensus 21 ~al~~~~ps~~~~i~~~i~~~~p~v~w~DIgGl~~~k~~L~e~ 63 (84)
..|..+++..++.|..++.....+....-.||.+.+++.|..+
T Consensus 43 a~l~~v~~~~~~~Vl~EF~~~~~~~~~~~~gg~~~~~~lL~~a 85 (108)
T PF14842_consen 43 AKLGSVSPEEVEEVLEEFYDEIRAQGGIVSGGRDFARRLLEKA 85 (108)
T ss_dssp HT-----HHHHHHHHHHHHHHHHHTT---S-HHHHHHH-HHHH
T ss_pred HccCCCCHHHHHHHHHHHHHHHHHccccccChHHHHHHHHHHH
Confidence 3456677788777887776645555666789999999988876
No 41
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.14 E-value=17 Score=28.69 Aligned_cols=27 Identities=19% Similarity=0.522 Sum_probs=22.6
Q ss_pred cCCCCcceecccCcHHHHHHHHHHHhh
Q psy4539 40 DQGKPVTWDDIAGLTFAKQTIQEVIVW 66 (84)
Q Consensus 40 ~~~p~v~w~DIgGl~~~k~~L~e~v~~ 66 (84)
.+-...+|+||.|++++++.|+..+.-
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~ 32 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQ 32 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHc
Confidence 345667899999999999999988765
No 42
>KOG0989|consensus
Probab=34.04 E-value=26 Score=26.77 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=22.1
Q ss_pred CCCCcceecccCcHHHHHHHHHHHhh
Q psy4539 41 QGKPVTWDDIAGLTFAKQTIQEVIVW 66 (84)
Q Consensus 41 ~~p~v~w~DIgGl~~~k~~L~e~v~~ 66 (84)
+-..-+++|+.|++++.+.|+.++.-
T Consensus 29 KYrPkt~de~~gQe~vV~~L~~a~~~ 54 (346)
T KOG0989|consen 29 KYRPKTFDELAGQEHVVQVLKNALLR 54 (346)
T ss_pred HhCCCcHHhhcchHHHHHHHHHHHhh
Confidence 44556789999999999999999877
No 43
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=32.46 E-value=29 Score=25.00 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=21.8
Q ss_pred CCCCcceecccCcHHHHHHHHHHHhh
Q psy4539 41 QGKPVTWDDIAGLTFAKQTIQEVIVW 66 (84)
Q Consensus 41 ~~p~v~w~DIgGl~~~k~~L~e~v~~ 66 (84)
+-...+|+||.|.+.+++.|++.+.-
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~ 32 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKN 32 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHc
Confidence 34567899999999999999998754
No 44
>PF06820 Phage_fiber_C: Putative prophage tail fibre C-terminus; InterPro: IPR009640 This entry represents the C terminus of phage 933W tail fibre protein. This domain is found together with conserved RLGP motif. The characteristics of the protein distribution suggest prophage matches.
Probab=31.67 E-value=13 Score=21.49 Aligned_cols=14 Identities=36% Similarity=0.603 Sum_probs=10.2
Q ss_pred CCCCcceecccCcH
Q psy4539 41 QGKPVTWDDIAGLT 54 (84)
Q Consensus 41 ~~p~v~w~DIgGl~ 54 (84)
..-+=.|.||+||+
T Consensus 51 ~fgDGpWqdikgld 64 (64)
T PF06820_consen 51 RFGDGPWQDIKGLD 64 (64)
T ss_pred EeccCChhhccCCC
Confidence 34455799999984
No 45
>KOG4009|consensus
Probab=31.31 E-value=29 Score=23.42 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=17.8
Q ss_pred CCCcceecccCcHHHHHHHHH
Q psy4539 42 GKPVTWDDIAGLTFAKQTIQE 62 (84)
Q Consensus 42 ~p~v~w~DIgGl~~~k~~L~e 62 (84)
.=.+.|.|+||..++++++..
T Consensus 114 n~f~kygdLGgys~ar~aymK 134 (156)
T KOG4009|consen 114 NYFVKYGDLGGYSSARKAYMK 134 (156)
T ss_pred HHhhhhccccccchHHHHHHH
Confidence 346899999999999998765
No 46
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=30.86 E-value=21 Score=25.28 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=18.6
Q ss_pred ceecccCcHHHHHHHHHHHhh
Q psy4539 46 TWDDIAGLTFAKQTIQEVIVW 66 (84)
Q Consensus 46 ~w~DIgGl~~~k~~L~e~v~~ 66 (84)
+|+|+.|++++++.|+..+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~ 22 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEA 22 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHH
Confidence 689999999999999988764
No 47
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=30.59 E-value=51 Score=26.40 Aligned_cols=36 Identities=22% Similarity=0.455 Sum_probs=26.9
Q ss_pred CCCCcceecccCcHHHHHHHHHHHhhc-ccChHHHhc
Q psy4539 41 QGKPVTWDDIAGLTFAKQTIQEVIVWP-MLRPDIFTG 76 (84)
Q Consensus 41 ~~p~v~w~DIgGl~~~k~~L~e~v~~P-l~~p~lf~~ 76 (84)
+-..-+|+|+-|++++.+.|+.++..- +.|.=+|.+
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG 45 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSG 45 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcC
Confidence 456678999999999999999998773 333344443
No 48
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.58 E-value=29 Score=25.82 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=22.1
Q ss_pred CCCCcceecccCcHHHHHHHHHHHhh
Q psy4539 41 QGKPVTWDDIAGLTFAKQTIQEVIVW 66 (84)
Q Consensus 41 ~~p~v~w~DIgGl~~~k~~L~e~v~~ 66 (84)
+-...+|+||.|++++++.|+.++.-
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~~ 34 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSL 34 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHHc
Confidence 44557899999999999999998765
No 49
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=29.23 E-value=37 Score=24.49 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=18.2
Q ss_pred ceecccCcHHHHHHHHHHHhh
Q psy4539 46 TWDDIAGLTFAKQTIQEVIVW 66 (84)
Q Consensus 46 ~w~DIgGl~~~k~~L~e~v~~ 66 (84)
+|+||-|++.+++.|+..+.-
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~ 22 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK 22 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc
Confidence 689999999999999998754
No 50
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.09 E-value=31 Score=27.58 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=22.2
Q ss_pred CCCCcceecccCcHHHHHHHHHHHhh
Q psy4539 41 QGKPVTWDDIAGLTFAKQTIQEVIVW 66 (84)
Q Consensus 41 ~~p~v~w~DIgGl~~~k~~L~e~v~~ 66 (84)
+-..-+|+||.|++++++.|+..+.-
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~~ 34 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDT 34 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc
Confidence 44567899999999999999998765
No 51
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=26.22 E-value=40 Score=26.13 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=21.5
Q ss_pred CCCcceecccCcHHHHHHHHHHHhh
Q psy4539 42 GKPVTWDDIAGLTFAKQTIQEVIVW 66 (84)
Q Consensus 42 ~p~v~w~DIgGl~~~k~~L~e~v~~ 66 (84)
-...+|+||.|.+.+++.|+..+..
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i~~ 35 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNALRF 35 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc
Confidence 3457899999999999999998865
No 52
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.20 E-value=45 Score=26.37 Aligned_cols=26 Identities=8% Similarity=0.236 Sum_probs=22.3
Q ss_pred CCCCcceecccCcHHHHHHHHHHHhh
Q psy4539 41 QGKPVTWDDIAGLTFAKQTIQEVIVW 66 (84)
Q Consensus 41 ~~p~v~w~DIgGl~~~k~~L~e~v~~ 66 (84)
+-..-+|+||.|++++++.|+.++.-
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~ 34 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQ 34 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHh
Confidence 45567899999999999999998865
No 53
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=23.99 E-value=44 Score=26.65 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=22.4
Q ss_pred CCCCcceecccCcHHHHHHHHHHHhh
Q psy4539 41 QGKPVTWDDIAGLTFAKQTIQEVIVW 66 (84)
Q Consensus 41 ~~p~v~w~DIgGl~~~k~~L~e~v~~ 66 (84)
+-...+|+||.|++++++.|+.++.-
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~ 34 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQ 34 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHc
Confidence 45667899999999999999998765
No 54
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=23.98 E-value=71 Score=22.51 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=17.1
Q ss_pred eecccCcHHHHHHHHHHHhh
Q psy4539 47 WDDIAGLTFAKQTIQEVIVW 66 (84)
Q Consensus 47 w~DIgGl~~~k~~L~e~v~~ 66 (84)
|+||-|++.+|++|.-+..=
T Consensus 2 f~dI~GQe~aKrAL~iAAaG 21 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG 21 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC
T ss_pred hhhhcCcHHHHHHHHHHHcC
Confidence 68999999999999887653
No 55
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=23.89 E-value=53 Score=18.81 Aligned_cols=22 Identities=14% Similarity=0.363 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhcccChHHHhcC
Q psy4539 56 AKQTIQEVIVWPMLRPDIFTGL 77 (84)
Q Consensus 56 ~k~~L~e~v~~Pl~~p~lf~~l 77 (84)
+-.++--++..|+.|||.|++.
T Consensus 18 iG~a~Ypi~~~Pmm~~eeYk~~ 39 (58)
T PF15061_consen 18 IGAALYPIYFRPMMNPEEYKKE 39 (58)
T ss_pred HHHHHhhhhcccccChHHHHHH
Confidence 3346777889999999999753
No 56
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=23.39 E-value=79 Score=23.73 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=20.8
Q ss_pred CCCCCCCCCCCCHHHHHHHhccCCh
Q psy4539 4 DMPSGPRGKELEPELEDERYKGIDK 28 (84)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~al~~~~p 28 (84)
--|++|+|..++.+++.+-+...+.
T Consensus 152 ~nPNNPTG~~~~~~~l~~l~~~~~~ 176 (356)
T COG0079 152 CNPNNPTGTLLPREELRALLEALPE 176 (356)
T ss_pred eCCCCCCCCCCCHHHHHHHHHhCCC
Confidence 3599999999999999988876543
No 57
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=22.95 E-value=46 Score=26.72 Aligned_cols=26 Identities=19% Similarity=0.450 Sum_probs=22.1
Q ss_pred CCCCcceecccCcHHHHHHHHHHHhh
Q psy4539 41 QGKPVTWDDIAGLTFAKQTIQEVIVW 66 (84)
Q Consensus 41 ~~p~v~w~DIgGl~~~k~~L~e~v~~ 66 (84)
+-...+|+||.|++++++.|+..+.-
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~ 34 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIES 34 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc
Confidence 45567899999999999999998864
No 58
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.49 E-value=59 Score=23.90 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.3
Q ss_pred CCCCcceecccCcHHHHHHHHHHHhh
Q psy4539 41 QGKPVTWDDIAGLTFAKQTIQEVIVW 66 (84)
Q Consensus 41 ~~p~v~w~DIgGl~~~k~~L~e~v~~ 66 (84)
+-...+|+||.|.+.+++.|+..+.-
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~~ 35 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIEN 35 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHHc
Confidence 45667899999999999999998865
No 59
>KOG0743|consensus
Probab=22.31 E-value=89 Score=24.82 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=29.3
Q ss_pred cceecccCcHHHHHHHHHHHhhcccChHHHhcCCCCCC
Q psy4539 45 VTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLRRPPK 82 (84)
Q Consensus 45 v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~~ppk 82 (84)
-+|+-++--...|+.|.+=+.-=++..+.|++.|+|||
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawK 235 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWK 235 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchh
Confidence 45666776678888887755554899999999998886
No 60
>PF08195 TRI9: TRI9 protein; InterPro: IPR013265 This entry contains putative genes, of 129 bp, from the Trichothecene gene cluster of Fusarium sporotrichioides and Gibberella zeae (Fusarium graminearum) that encode a predicted protein of 43 amino acids whose function is unknown [, ].
Probab=21.90 E-value=46 Score=17.60 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=21.9
Q ss_pred hhcCCCCcceecccCcHHHHHHHHHHH
Q psy4539 38 IMDQGKPVTWDDIAGLTFAKQTIQEVI 64 (84)
Q Consensus 38 i~~~~p~v~w~DIgGl~~~k~~L~e~v 64 (84)
.....|.|+|-.+-.+..+..+|.-+|
T Consensus 10 ~~~~dp~vswle~~aysgvsaalcati 36 (43)
T PF08195_consen 10 SYDMDPDVSWLEVCAYSGVSAALCATI 36 (43)
T ss_pred cccCCCCccHHHhhHhcchhHHHHHHH
Confidence 345789999999988888888887664
No 61
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.82 E-value=46 Score=26.06 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=22.0
Q ss_pred CCCCcceecccCcHHHHHHHHHHHhhc
Q psy4539 41 QGKPVTWDDIAGLTFAKQTIQEVIVWP 67 (84)
Q Consensus 41 ~~p~v~w~DIgGl~~~k~~L~e~v~~P 67 (84)
+-..-+|+||.|++++++.|+.++.-.
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~~~ 33 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALKKN 33 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHcC
Confidence 445668999999999999999877653
No 62
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.20 E-value=53 Score=26.59 Aligned_cols=26 Identities=12% Similarity=0.335 Sum_probs=21.9
Q ss_pred CCCCcceecccCcHHHHHHHHHHHhh
Q psy4539 41 QGKPVTWDDIAGLTFAKQTIQEVIVW 66 (84)
Q Consensus 41 ~~p~v~w~DIgGl~~~k~~L~e~v~~ 66 (84)
+-..-+|+||.|++++++.|+..+.-
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~~ 31 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDA 31 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc
Confidence 34556899999999999999998775
No 63
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=20.98 E-value=80 Score=23.02 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=21.6
Q ss_pred CCCCcceecccCcHHHHHHHHHHHh
Q psy4539 41 QGKPVTWDDIAGLTFAKQTIQEVIV 65 (84)
Q Consensus 41 ~~p~v~w~DIgGl~~~k~~L~e~v~ 65 (84)
....+.++++.|++.+|+.|.+...
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~ 44 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTE 44 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHH
Confidence 4567899999999999999998764
Done!