Query psy4539
Match_columns 84
No_of_seqs 136 out of 1045
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 19:42:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4539.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4539hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 99.4 3.2E-14 1.1E-18 106.7 1.9 54 26-83 130-184 (405)
2 4b4t_L 26S protease subunit RP 99.3 6.5E-13 2.2E-17 100.2 1.3 49 35-83 168-217 (437)
3 4b4t_H 26S protease regulatory 99.2 1.2E-12 4.1E-17 99.7 1.0 45 39-83 200-245 (467)
4 4b4t_I 26S protease regulatory 99.2 1.4E-12 4.8E-17 98.7 1.2 48 36-83 170-218 (437)
5 3cf2_A TER ATPase, transitiona 99.2 1.8E-12 6.2E-17 103.7 1.4 67 13-83 446-513 (806)
6 4b4t_M 26S protease regulatory 99.2 3.2E-12 1.1E-16 96.4 1.0 49 35-83 168-217 (434)
7 4b4t_K 26S protease regulatory 99.1 1.5E-11 5E-16 92.6 2.6 47 37-83 161-208 (428)
8 3cf2_A TER ATPase, transitiona 98.8 9.3E-10 3.2E-14 88.2 1.3 43 41-83 197-240 (806)
9 1xwi_A SKD1 protein; VPS4B, AA 98.7 6.2E-09 2.1E-13 74.5 2.3 46 38-83 2-47 (322)
10 2x8a_A Nuclear valosin-contain 98.6 7.6E-09 2.6E-13 72.8 1.9 43 41-83 3-46 (274)
11 3d8b_A Fidgetin-like protein 1 98.6 1.1E-08 3.8E-13 73.9 2.3 68 15-82 51-118 (357)
12 3cf0_A Transitional endoplasmi 98.6 9.9E-09 3.4E-13 72.5 1.5 49 35-83 2-51 (301)
13 2qp9_X Vacuolar protein sortin 98.4 7.3E-08 2.5E-12 69.8 2.1 54 30-83 33-86 (355)
14 3b9p_A CG5977-PA, isoform A; A 98.3 2.4E-07 8.2E-12 64.3 2.7 54 29-82 2-55 (297)
15 2zan_A Vacuolar protein sortin 98.2 2.7E-07 9.4E-12 68.7 1.8 54 30-83 116-169 (444)
16 3eie_A Vacuolar protein sortin 98.2 3.1E-07 1E-11 65.2 1.7 48 36-83 6-53 (322)
17 1ypw_A Transitional endoplasmi 98.0 1.1E-06 3.7E-11 70.0 0.6 68 12-83 445-513 (806)
18 3hu3_A Transitional endoplasmi 97.9 2.6E-06 8.8E-11 64.6 1.5 40 12-55 445-484 (489)
19 3h4m_A Proteasome-activating n 97.7 1.7E-05 5.7E-10 54.5 2.2 44 39-82 8-52 (285)
20 3vfd_A Spastin; ATPase, microt 97.6 6.6E-06 2.3E-10 59.7 -0.3 56 27-82 94-149 (389)
21 1ypw_A Transitional endoplasmi 97.4 3.6E-05 1.2E-09 61.3 0.9 43 41-83 197-240 (806)
22 2qz4_A Paraplegin; AAA+, SPG7, 97.4 6.5E-05 2.2E-09 50.6 1.9 40 43-83 1-41 (262)
23 3hu3_A Transitional endoplasmi 97.3 9E-05 3.1E-09 56.1 2.1 41 43-83 199-240 (489)
24 1lv7_A FTSH; alpha/beta domain 97.1 0.00017 5.9E-09 48.9 2.1 43 40-83 4-47 (257)
25 2ce7_A Cell division protein F 97.0 0.00037 1.3E-08 52.9 3.3 41 42-83 10-51 (476)
26 2r62_A Cell division protease 97.0 0.00019 6.4E-09 48.8 1.4 43 40-83 3-46 (268)
27 1ixz_A ATP-dependent metallopr 97.0 0.00058 2E-08 46.2 3.5 47 36-83 4-51 (254)
28 2dhr_A FTSH; AAA+ protein, hex 96.4 0.0017 5.7E-08 49.5 2.7 42 41-83 24-66 (499)
29 1iy2_A ATP-dependent metallopr 95.9 0.0057 1.9E-07 42.0 3.3 44 39-83 31-75 (278)
30 3cmw_A Protein RECA, recombina 95.7 0.0022 7.5E-08 55.2 0.4 35 42-76 1014-1058(1706)
31 1g41_A Heat shock protein HSLU 86.2 0.3 1E-05 36.7 1.8 31 48-78 15-45 (444)
32 3syl_A Protein CBBX; photosynt 77.6 1 3.5E-05 30.5 1.7 31 47-78 30-60 (309)
33 3qwz_A Transitional endoplasmi 58.9 2.4 8.2E-05 28.8 0.4 12 41-52 200-211 (211)
34 2c9o_A RUVB-like 1; hexameric 51.7 8.9 0.0003 28.0 2.5 25 42-66 31-55 (456)
35 1g8p_A Magnesium-chelatase 38 49.9 9.6 0.00033 25.9 2.3 42 20-67 2-43 (350)
36 3aji_B S6C, proteasome (prosom 31.3 14 0.00049 20.4 0.7 19 12-30 57-75 (83)
37 3pfi_A Holliday junction ATP-d 20.4 76 0.0026 21.4 2.8 27 41-67 22-48 (338)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.42 E-value=3.2e-14 Score=106.73 Aligned_cols=54 Identities=30% Similarity=0.498 Sum_probs=49.6
Q ss_pred CChhHHHHHHhhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 26 IDKVMIERIENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 26 ~~ps~~~~i~~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
++|.+ .+..+.+.|+|+|+|||||+++|++|+|+|+||++||++|+++| +||||
T Consensus 130 ~~~~~----~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prG 184 (405)
T 4b4t_J 130 ADPLV----SLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKG 184 (405)
T ss_dssp CSCCT----TSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCC
T ss_pred cCchh----hhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCc
Confidence 45555 67778899999999999999999999999999999999999999 99998
No 2
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.27 E-value=6.5e-13 Score=100.24 Aligned_cols=49 Identities=35% Similarity=0.559 Sum_probs=45.6
Q ss_pred HhhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 35 ENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 35 ~~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
....+.+.|+|+|+||||++++|++|+|+|+||++||++|+++| +||||
T Consensus 168 ~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prG 217 (437)
T 4b4t_L 168 YNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKG 217 (437)
T ss_dssp SSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCE
T ss_pred heeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCe
Confidence 45566789999999999999999999999999999999999999 99997
No 3
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.23 E-value=1.2e-12 Score=99.69 Aligned_cols=45 Identities=31% Similarity=0.624 Sum_probs=43.1
Q ss_pred hcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 39 MDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 39 ~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
+.+.|+|+|+||||++++|++|+|.|+||++||++|+++| +||||
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprG 245 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKG 245 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSE
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCc
Confidence 5689999999999999999999999999999999999999 99997
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.23 E-value=1.4e-12 Score=98.68 Aligned_cols=48 Identities=29% Similarity=0.585 Sum_probs=44.5
Q ss_pred hhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 36 NEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 36 ~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
...+.+.|+|+|+|||||+++|++|+|.|+||++||++|+++| +||||
T Consensus 170 ~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prG 218 (437)
T 4b4t_I 170 VMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKG 218 (437)
T ss_dssp CCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSE
T ss_pred eeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCC
Confidence 3446689999999999999999999999999999999999999 99987
No 5
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.22 E-value=1.8e-12 Score=103.73 Aligned_cols=67 Identities=25% Similarity=0.380 Sum_probs=63.4
Q ss_pred CCCHHHHHHHhccCChhHHHHHHhhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 13 ELEPELEDERYKGIDKVMIERIENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 13 ~~~~~~~~~al~~~~ps~~~~i~~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
.++.+||..|++.+.|++ ++++..+.|+++|+||||++++|++|+++|.||++||++|.+++ +||+|
T Consensus 446 ~v~~~Df~~Al~~~~ps~----~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~g 513 (806)
T 3cf2_A 446 AVTMDDFRWALSQSNPSA----LRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKG 513 (806)
T ss_dssp EECTTHHHHHHSSSSCCC----CCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSC
T ss_pred eeeHHHHHHHHHhCCCcc----cccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCce
Confidence 467889999999999999 78888899999999999999999999999999999999999999 99987
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.18 E-value=3.2e-12 Score=96.40 Aligned_cols=49 Identities=33% Similarity=0.523 Sum_probs=44.9
Q ss_pred HhhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 35 ENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 35 ~~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
....+.+.|+++|+||||++++|++|+|.|+||++||++|+++| +||||
T Consensus 168 ~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prG 217 (434)
T 4b4t_M 168 KAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKG 217 (434)
T ss_dssp SCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCE
T ss_pred hhcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCe
Confidence 34445689999999999999999999999999999999999999 99987
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.13 E-value=1.5e-11 Score=92.59 Aligned_cols=47 Identities=28% Similarity=0.593 Sum_probs=43.8
Q ss_pred hhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 37 EIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 37 ~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
..+.+.|+|+|+||||++++|+.|+|.|.+|++||++|+++| +||||
T Consensus 161 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prG 208 (428)
T 4b4t_K 161 MGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRG 208 (428)
T ss_dssp CEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCE
T ss_pred ccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCce
Confidence 335688999999999999999999999999999999999999 99997
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.80 E-value=9.3e-10 Score=88.16 Aligned_cols=43 Identities=28% Similarity=0.587 Sum_probs=41.2
Q ss_pred CCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 41 QGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 41 ~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
..++|+|+||||++.+|++|+|.|.+|++||++|+++| +||||
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~G 240 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 240 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCE
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCe
Confidence 46899999999999999999999999999999999999 99997
No 9
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.67 E-value=6.2e-09 Score=74.54 Aligned_cols=46 Identities=37% Similarity=0.693 Sum_probs=40.2
Q ss_pred hhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCCCCCCC
Q psy4539 38 IMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLRRPPKD 83 (84)
Q Consensus 38 i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~~ppkG 83 (84)
++.+.|+++|+||||++.+|+.|+++|.+|++||++|.+...|++|
T Consensus 2 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~ 47 (322)
T 1xwi_A 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRG 47 (322)
T ss_dssp CEEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSE
T ss_pred eeecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCce
Confidence 3467899999999999999999999999999999999865466654
No 10
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.64 E-value=7.6e-09 Score=72.80 Aligned_cols=43 Identities=30% Similarity=0.500 Sum_probs=32.5
Q ss_pred CCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 41 QGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 41 ~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
..|+++|+||||++++|+.|++.|++|+.+++.|+.++ .+++|
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G 46 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG 46 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe
Confidence 56899999999999999999999999999999999998 88876
No 11
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.62 E-value=1.1e-08 Score=73.95 Aligned_cols=68 Identities=65% Similarity=1.125 Sum_probs=56.9
Q ss_pred CHHHHHHHhccCChhHHHHHHhhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCCCCCC
Q psy4539 15 EPELEDERYKGIDKVMIERIENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLRRPPK 82 (84)
Q Consensus 15 ~~~~~~~al~~~~ps~~~~i~~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~~ppk 82 (84)
....+.++|+.+++...+.+.++++.+.+.++|+||+|++.+++.|++.+.+|+.+|++|.+++.+++
T Consensus 51 ~~~~~~~~l~~~~~~~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~ 118 (357)
T 3d8b_A 51 PAHPVDERLKNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPK 118 (357)
T ss_dssp ------CCSTTSCHHHHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCS
T ss_pred ccchHHHHhccCChHHHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCc
Confidence 34567889999999999999999999999999999999999999999999999999999987654443
No 12
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.60 E-value=9.9e-09 Score=72.50 Aligned_cols=49 Identities=35% Similarity=0.613 Sum_probs=44.2
Q ss_pred HhhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 35 ENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 35 ~~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
+|+++.+.|+++|+||+|++.+++.|++.+.+|+.+|+.|..++ .+++|
T Consensus 2 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~ 51 (301)
T 3cf0_A 2 LRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKG 51 (301)
T ss_dssp CCCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSE
T ss_pred CccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCce
Confidence 47778889999999999999999999999999999999999877 66653
No 13
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.42 E-value=7.3e-08 Score=69.79 Aligned_cols=54 Identities=30% Similarity=0.663 Sum_probs=36.4
Q ss_pred HHHHHHhhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCCCCCCC
Q psy4539 30 MIERIENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLRRPPKD 83 (84)
Q Consensus 30 ~~~~i~~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~~ppkG 83 (84)
+.+.+.+.+..+.++++|+||+|++.+++.|+++|.+|+.+|++|.+...|++|
T Consensus 33 ~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~ 86 (355)
T 2qp9_X 33 LRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSG 86 (355)
T ss_dssp --------------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCC
T ss_pred HHHHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCce
Confidence 333446667778899999999999999999999999999999999874466654
No 14
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.31 E-value=2.4e-07 Score=64.27 Aligned_cols=54 Identities=46% Similarity=0.885 Sum_probs=47.4
Q ss_pred hHHHHHHhhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCCCCCC
Q psy4539 29 VMIERIENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLRRPPK 82 (84)
Q Consensus 29 s~~~~i~~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~~ppk 82 (84)
++++.++++++.+.+.++|+||+|++.+++.|++.+.+|+.+|++|.+++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~ 55 (297)
T 3b9p_A 2 KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAK 55 (297)
T ss_dssp CHHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCS
T ss_pred cHHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCC
Confidence 456778899998999999999999999999999999999999999987654443
No 15
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.24 E-value=2.7e-07 Score=68.67 Aligned_cols=54 Identities=31% Similarity=0.641 Sum_probs=40.3
Q ss_pred HHHHHHhhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCCCCCCC
Q psy4539 30 MIERIENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLRRPPKD 83 (84)
Q Consensus 30 ~~~~i~~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~~ppkG 83 (84)
+.+.+.+.++.+.|+++|+||+|++.+++.|+++|.+|+++|++|.+...|++|
T Consensus 116 ~~~~~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~ 169 (444)
T 2zan_A 116 LQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRG 169 (444)
T ss_dssp --------CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSE
T ss_pred HHHHhhcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCce
Confidence 334446667778999999999999999999999999999999999863355543
No 16
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.23 E-value=3.1e-07 Score=65.24 Aligned_cols=48 Identities=33% Similarity=0.729 Sum_probs=41.9
Q ss_pred hhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCCCCCCC
Q psy4539 36 NEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLRRPPKD 83 (84)
Q Consensus 36 ~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~~ppkG 83 (84)
..++.+.|+++|+||+|++.+|+.|++.+.+|+.+|++|.+.+.|++|
T Consensus 6 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 53 (322)
T 3eie_A 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSG 53 (322)
T ss_dssp CCSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCE
T ss_pred cceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCe
Confidence 445678999999999999999999999999999999999875566554
No 17
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.99 E-value=1.1e-06 Score=69.98 Aligned_cols=68 Identities=25% Similarity=0.364 Sum_probs=58.8
Q ss_pred CCCCHHHHHHHhccCChhHHHHHHhhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 12 KELEPELEDERYKGIDKVMIERIENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 12 ~~~~~~~~~~al~~~~ps~~~~i~~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
..++..+|..++....++. .++.....++++|+||+|++.+|+.|++.+.||+.+++.|..++ .+++|
T Consensus 445 ~~v~~~d~~~al~~~~~s~----~~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~ 513 (806)
T 1ypw_A 445 LAVTMDDFRWALSQSNPSA----LRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKG 513 (806)
T ss_dssp CCCCTTHHHHHHHHSCCCC----CCCCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCC
T ss_pred hhhhhhhhhccccccCchh----hhhhcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCce
Confidence 3467778888998888877 57777889999999999999999999999999999999999887 66554
No 18
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.92 E-value=2.6e-06 Score=64.62 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhccCChhHHHHHHhhhhcCCCCcceecccCcHH
Q psy4539 12 KELEPELEDERYKGIDKVMIERIENEIMDQGKPVTWDDIAGLTF 55 (84)
Q Consensus 12 ~~~~~~~~~~al~~~~ps~~~~i~~~i~~~~p~v~w~DIgGl~~ 55 (84)
..++.++|.+|++.+.|++ ++++..+.|+|+|+||||..+
T Consensus 445 ~~vt~edf~~Al~~~~ps~----~re~~~e~p~v~W~dig~~~~ 484 (489)
T 3hu3_A 445 LAVTMDDFRWALSQSNPSA----LRETVVEVPQVTWEDIGGRSH 484 (489)
T ss_dssp CCBCHHHHHHHHTSHHHHH----HHGGGC---------------
T ss_pred CcCCHHHHHHHHHhCCchh----hhcccccCCCCCHHHcCCCcc
Confidence 3579999999999999999 799999999999999999864
No 19
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.67 E-value=1.7e-05 Score=54.46 Aligned_cols=44 Identities=36% Similarity=0.707 Sum_probs=39.5
Q ss_pred hcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCC
Q psy4539 39 MDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPK 82 (84)
Q Consensus 39 ~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppk 82 (84)
+...|+++|+||+|++.+++.|++.+.+|+.++++|..++ .+++
T Consensus 8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 52 (285)
T 3h4m_A 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPK 52 (285)
T ss_dssp EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCS
T ss_pred ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCC
Confidence 4578899999999999999999999999999999999877 6554
No 20
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.63 E-value=6.6e-06 Score=59.67 Aligned_cols=56 Identities=50% Similarity=0.892 Sum_probs=44.0
Q ss_pred ChhHHHHHHhhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCCCCCC
Q psy4539 27 DKVMIERIENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLRRPPK 82 (84)
Q Consensus 27 ~ps~~~~i~~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~~ppk 82 (84)
.+...+.+++.++.+.+.++|+||+|++.+++.|++.+.+|+.++++|.+++.+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 149 (389)
T 3vfd_A 94 DSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPAR 149 (389)
T ss_dssp ---CCTTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCS
T ss_pred cHHHHHHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCc
Confidence 33333334667777889999999999999999999999999999999987664443
No 21
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.38 E-value=3.6e-05 Score=61.28 Aligned_cols=43 Identities=26% Similarity=0.580 Sum_probs=38.5
Q ss_pred CCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 41 QGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 41 ~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
..+.++|+||+|++.+++.|++.+.+|+.||++|+.++ .+++|
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~ 240 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 240 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCE
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCe
Confidence 45679999999999999999999999999999999988 66653
No 22
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.36 E-value=6.5e-05 Score=50.60 Aligned_cols=40 Identities=30% Similarity=0.549 Sum_probs=29.7
Q ss_pred CCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 43 KPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 43 p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
|+++|+||+|++.+|+.|++.+.+ +.+|+.|..++ .+++|
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~ 41 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKG 41 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCE
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCce
Confidence 578999999999999999999988 89999998777 55543
No 23
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.29 E-value=9e-05 Score=56.14 Aligned_cols=41 Identities=29% Similarity=0.650 Sum_probs=37.2
Q ss_pred CCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 43 KPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 43 p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
+.++|++|+|++.+++.|++.+.+|+++|++|..++ .+++|
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~ 240 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 240 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCE
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCc
Confidence 568999999999999999999999999999999887 66654
No 24
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.14 E-value=0.00017 Score=48.93 Aligned_cols=43 Identities=28% Similarity=0.501 Sum_probs=33.6
Q ss_pred cCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 40 DQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 40 ~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
.+.+.++|+||+|++.+++.|++.+.+ +.+++.|+.++ .+++|
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~ 47 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKG 47 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCE
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCe
Confidence 356789999999999999999999887 89999988777 66654
No 25
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.04 E-value=0.00037 Score=52.87 Aligned_cols=41 Identities=32% Similarity=0.556 Sum_probs=37.5
Q ss_pred CCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 42 GKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 42 ~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
.+.++|+||+|++.+|+.|++.+.+ +.+|+.|..++ ++|+|
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~g 51 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKG 51 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSE
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCe
Confidence 6789999999999999999999988 88999999988 88775
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.01 E-value=0.00019 Score=48.84 Aligned_cols=43 Identities=26% Similarity=0.478 Sum_probs=36.9
Q ss_pred cCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 40 DQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 40 ~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
.+.+.++|+||+|++.+++.|++.+.+ +.+|+.|..++ ++++|
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~ 46 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKG 46 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSC
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCce
Confidence 357889999999999999999999887 99999998776 65554
No 27
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.97 E-value=0.00058 Score=46.19 Aligned_cols=47 Identities=28% Similarity=0.564 Sum_probs=37.2
Q ss_pred hhhhcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 36 NEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 36 ~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
..++...|.++|+||+|++.+++.+++.+.+ +.++..|..++ +.++|
T Consensus 4 ~~~~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g 51 (254)
T 1ixz_A 4 GSVLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKG 51 (254)
T ss_dssp ----CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSE
T ss_pred cccccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCe
Confidence 4456788999999999999999999998776 78888888877 66654
No 28
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.38 E-value=0.0017 Score=49.52 Aligned_cols=42 Identities=31% Similarity=0.580 Sum_probs=37.3
Q ss_pred CCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 41 QGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 41 ~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
..+.++|+||+|++.+++.|++.+.+ +.+++.|..++ +.|+|
T Consensus 24 ~~~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~G 66 (499)
T 2dhr_A 24 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKG 66 (499)
T ss_dssp SCCCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSE
T ss_pred cCCCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCce
Confidence 34899999999999999999999887 88999999888 77775
No 29
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.93 E-value=0.0057 Score=41.98 Aligned_cols=44 Identities=30% Similarity=0.575 Sum_probs=36.3
Q ss_pred hcCCCCcceecccCcHHHHHHHHHHHhhcccChHHHhcCC-CCCCC
Q psy4539 39 MDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPKD 83 (84)
Q Consensus 39 ~~~~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~-~ppkG 83 (84)
+...+.++|+||+|++++++.+++.+.+ +.++..|..++ +.++|
T Consensus 31 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~g 75 (278)
T 1iy2_A 31 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKG 75 (278)
T ss_dssp BCCCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCE
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCe
Confidence 4456899999999999999999998776 77888888777 66654
No 30
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.65 E-value=0.0022 Score=55.16 Aligned_cols=35 Identities=6% Similarity=-0.051 Sum_probs=22.3
Q ss_pred CCCcceecccCcHHHHHHHHHHHhhcccC----------hHHHhc
Q psy4539 42 GKPVTWDDIAGLTFAKQTIQEVIVWPMLR----------PDIFTG 76 (84)
Q Consensus 42 ~p~v~w~DIgGl~~~k~~L~e~v~~Pl~~----------p~lf~~ 76 (84)
.+.++|+||||++.+|+.+.++++||+.+ ++.|+.
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1058 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSM 1058 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGG
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhc
Confidence 35589999999999999999999999955 777876
No 31
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=86.15 E-value=0.3 Score=36.75 Aligned_cols=31 Identities=23% Similarity=0.186 Sum_probs=27.3
Q ss_pred ecccCcHHHHHHHHHHHhhcccChHHHhcCC
Q psy4539 48 DDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR 78 (84)
Q Consensus 48 ~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~ 78 (84)
++|+|++++|+.|..++..|.+++.+|..++
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~ 45 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLR 45 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccc
Confidence 4799999999999999999988888877665
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=77.56 E-value=1 Score=30.53 Aligned_cols=31 Identities=19% Similarity=0.146 Sum_probs=24.2
Q ss_pred eecccCcHHHHHHHHHHHhhcccChHHHhcCC
Q psy4539 47 WDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR 78 (84)
Q Consensus 47 w~DIgGl~~~k~~L~e~v~~Pl~~p~lf~~l~ 78 (84)
|.+|+|++.+|+.|++.+.++. .+..+.++|
T Consensus 30 ~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g 60 (309)
T 3syl_A 30 DRELIGLKPVKDRIRETAALLL-VERARQKLG 60 (309)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHT
T ss_pred HHHccChHHHHHHHHHHHHHHH-hHHHHHHcC
Confidence 4489999999999999998854 466665544
No 33
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=58.91 E-value=2.4 Score=28.85 Aligned_cols=12 Identities=42% Similarity=0.639 Sum_probs=1.9
Q ss_pred CCCCcceecccC
Q psy4539 41 QGKPVTWDDIAG 52 (84)
Q Consensus 41 ~~p~v~w~DIgG 52 (84)
..+.|+|+||||
T Consensus 200 ~~~~VtYeDIGG 211 (211)
T 3qwz_A 200 SLNEVGYDDIGG 211 (211)
T ss_dssp CCC---------
T ss_pred cCCCcceeCCCC
Confidence 468899999998
No 34
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=51.72 E-value=8.9 Score=27.98 Aligned_cols=25 Identities=8% Similarity=0.035 Sum_probs=21.3
Q ss_pred CCCcceecccCcHHHHHHHHHHHhh
Q psy4539 42 GKPVTWDDIAGLTFAKQTIQEVIVW 66 (84)
Q Consensus 42 ~p~v~w~DIgGl~~~k~~L~e~v~~ 66 (84)
.+...|++|+|++.+++.+.+.+.+
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~ 55 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVEL 55 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHH
T ss_pred ChhhchhhccCHHHHHHHHHHHHHH
Confidence 4677899999999999999887754
No 35
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=49.87 E-value=9.6 Score=25.94 Aligned_cols=42 Identities=12% Similarity=0.060 Sum_probs=20.8
Q ss_pred HHHhccCChhHHHHHHhhhhcCCCCcceecccCcHHHHHHHHHHHhhc
Q psy4539 20 DERYKGIDKVMIERIENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWP 67 (84)
Q Consensus 20 ~~al~~~~ps~~~~i~~~i~~~~p~v~w~DIgGl~~~k~~L~e~v~~P 67 (84)
..|+..+.|+.. +. ...+..+|++|.|.+.+++.+...+..+
T Consensus 2 ~~~~~~~~~~~~----~~--~~~~~~~f~~i~G~~~~~~~l~~~~~~~ 43 (350)
T 1g8p_A 2 TTAVARLQPSAS----GA--KTRPVFPFSAIVGQEDMKLALLLTAVDP 43 (350)
T ss_dssp ----------------------CCCCCGGGSCSCHHHHHHHHHHHHCG
T ss_pred CCcccccCCccc----CC--CCCCCCCchhccChHHHHHHHHHHhhCC
Confidence 345666666663 22 3456789999999999998877665543
No 36
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=31.27 E-value=14 Score=20.44 Aligned_cols=19 Identities=16% Similarity=-0.018 Sum_probs=14.7
Q ss_pred CCCCHHHHHHHhccCChhH
Q psy4539 12 KELEPELEDERYKGIDKVM 30 (84)
Q Consensus 12 ~~~~~~~~~~al~~~~ps~ 30 (84)
..++.++|..|++.+.|+.
T Consensus 57 ~~i~~~df~~Al~~~~ps~ 75 (83)
T 3aji_B 57 YIVLAKDFEKAYKTVIKKD 75 (83)
T ss_dssp SSBCHHHHHHHHHHHCC--
T ss_pred CCcCHHHHHHHHHHHccCc
Confidence 4678999999999998887
No 37
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=20.36 E-value=76 Score=21.38 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=21.9
Q ss_pred CCCCcceecccCcHHHHHHHHHHHhhc
Q psy4539 41 QGKPVTWDDIAGLTFAKQTIQEVIVWP 67 (84)
Q Consensus 41 ~~p~v~w~DIgGl~~~k~~L~e~v~~P 67 (84)
+....+|++|.|.+.+++.|.+.+...
T Consensus 22 ~~~p~~~~~iiG~~~~~~~l~~~l~~~ 48 (338)
T 3pfi_A 22 SLRPSNFDGYIGQESIKKNLNVFIAAA 48 (338)
T ss_dssp -CCCCSGGGCCSCHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHH
Confidence 344458999999999999999988764
Done!