RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4539
(84 letters)
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 97.1 bits (242), Expect = 4e-26
Identities = 45/82 (54%), Positives = 53/82 (64%)
Query: 1 MDVDMPSGPRGKELEPELEDERYKGIDKVMIERIENEIMDQGKPVTWDDIAGLTFAKQTI 60
+ G DER K ++ MIE I NEIMD G PV W+DIAG+ FAK TI
Sbjct: 37 GGMQCKPYGAGPTEPAHPVDERLKNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATI 96
Query: 61 QEVIVWPMLRPDIFTGLRRPPK 82
+E++VWPMLRPDIFTGLR PPK
Sbjct: 97 KEIVVWPMLRPDIFTGLRGPPK 118
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 94.5 bits (235), Expect = 6e-25
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 2 DVDMPSGPRGKELEPELEDERYKGIDKVMIERIENEIMDQGKPVTWDDIAGLTFAKQTIQ 61
+ + + + ++ +D + I NEI+D G V +DDIAG AKQ +Q
Sbjct: 69 NRTNKPSTPTTATRKKKDLKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQ 128
Query: 62 EVIVWPMLRPDIFTGLRRPPK 82
E+++ P LRP++FTGLR P +
Sbjct: 129 EIVILPSLRPELFTGLRAPAR 149
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding,
nucleotide-binding, hydrolase; 2.70A {Drosophila
melanogaster}
Length = 297
Score = 87.4 bits (217), Expect = 1e-22
Identities = 25/55 (45%), Positives = 39/55 (70%)
Query: 28 KVMIERIENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLRRPPK 82
+ +++ I +EI++ G V W DIAG AKQ +QE+++ P +RP++FTGLR P K
Sbjct: 1 QKLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAK 55
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain,
beta domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 86.4 bits (214), Expect = 3e-22
Identities = 20/76 (26%), Positives = 40/76 (52%)
Query: 7 SGPRGKELEPELEDERYKGIDKVMIERIENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVW 66
S K++ E ++ +K + + + I+ + V W+D+AGL AK+ ++E ++
Sbjct: 10 SNGGNKKISQEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVIL 69
Query: 67 PMLRPDIFTGLRRPPK 82
P+ P +F G R+P
Sbjct: 70 PVKFPHLFKGNRKPTS 85
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 85.4 bits (211), Expect = 2e-21
Identities = 21/77 (27%), Positives = 38/77 (49%)
Query: 6 PSGPRGKELEPELEDERYKGIDKVMIERIENEIMDQGKPVTWDDIAGLTFAKQTIQEVIV 65
K + + E E K + +++ I+ + V W D+AGL AK+ ++E ++
Sbjct: 92 SGPVDEKGNDSDGEAESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVI 151
Query: 66 WPMLRPDIFTGLRRPPK 82
P+ P +FTG R P +
Sbjct: 152 LPIKFPHLFTGKRTPWR 168
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 80.1 bits (198), Expect = 5e-20
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 34 IENEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLRRPPK 82
I+ + V W+D+AGL AK+ ++E ++ P+ P +F G R+P
Sbjct: 4 PFTAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTS 52
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 75.1 bits (185), Expect = 5e-18
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 38 IMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLRRPPK 82
I+ + V W D+AGL AK+ ++E ++ P+ P +FTG R P +
Sbjct: 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWR 46
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A
{Mus musculus}
Length = 301
Score = 50.3 bits (121), Expect = 4e-09
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 45 VTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGL-RRPPK 82
VTW+DI GL K+ +QE++ +P+ PD F P K
Sbjct: 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSK 50
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 49.8 bits (119), Expect = 5e-09
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 36 NEIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGL-RRPPK 82
E + + VTW+DI GL K+ +QE++ +P+ PD F P K
Sbjct: 465 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSK 512
Score = 42.5 bits (100), Expect = 3e-06
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 44 PVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGL-RRPPK 82
V +DD+ G I+E++ P+ P +F + +PP+
Sbjct: 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPR 239
Score = 34.0 bits (78), Expect = 0.002
Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 1 MDVDMPSGPRGKELEPELEDERYKGIDKVMIERIENEIMDQGKP-VTWDDIAGLTFAKQT 59
++ ++ + +E E + ++ + E E M + V+ +DI QT
Sbjct: 703 IESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFE-EAMRFARRSVSDNDIRKYEMFAQT 761
Query: 60 IQEVIVWPMLRPDIFTGLR-RPPK 82
+Q+ + R P +
Sbjct: 762 LQQSRGFGSFRFPSGNQGGAGPSQ 785
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 49.5 bits (119), Expect = 6e-09
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 45 VTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGL-RRPPK 82
VTW DI L ++ + I+ P+ PD F L P
Sbjct: 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPA 45
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 42.3 bits (100), Expect = 3e-06
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 45 VTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPK 82
V ++DI GL Q I+EV+ P+ P++F + PPK
Sbjct: 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPK 52
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 40.9 bits (96), Expect = 8e-06
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 37 EIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLR-RPPK 82
+ + V +DDI G I+E++ P+ P +F + +PP+
Sbjct: 193 DEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPR 239
Score = 26.7 bits (59), Expect = 0.87
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 37 EIMDQGKPVTWDDIAGLTFAKQ 58
E + + VTW+DI G +
Sbjct: 466 ETVVEVPQVTWEDIGGRSHHHH 487
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 32.6 bits (75), Expect = 0.006
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
Query: 32 ERIENEIMD--QGKPVTWDDIAGLTFAKQTIQEVIVWPMLR--PDIFTGLRRPPKD 83
ER+ E + +T + + + + Q +QEV LR P + G R +D
Sbjct: 278 ERVRQEQNKLQLSQELTAETLKKMPYLDQVLQEV-----LRLIPPVGGGFRELIQD 328
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 29.6 bits (67), Expect = 0.082
Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 37 EIMDQGKPVTWDDIAGLTFAKQTIQEVIVWPMLR--PDIFTGLRRPPKD 83
E+ G+ V++ + + + ++E LR P + +R +
Sbjct: 288 ELYGDGRSVSFHALRQIPQLENVLKET-----LRLHPPLIILMRVAKGE 331
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 28.4 bits (64), Expect = 0.19
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 32 ERIENEIMD--QGKPVTWDDIAGLTFAKQTIQEVI-----VWPMLR 70
+RI +E+ G+PV ++D+ L I E + VW + R
Sbjct: 298 DRIRDEVEAVTGGRPVAFEDVRKLRHTGNVIVEAMRLRPAVWVLTR 343
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC
tepraloxydim, ATP-binding, biotin, fatty acid
biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae}
PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A*
3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A*
1uyt_A 1uyv_A
Length = 758
Score = 28.3 bits (63), Expect = 0.22
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 10 RGKELEPELEDERYKGIDKVMIERIENEIMDQGKPVTWD-----DIAGLTFAKQTIQEVI 64
R + L E ++ I K + +R E E++ ++ D + AK I + +
Sbjct: 580 RSQLSNKSLAPEVHQQISKQLADR-ERELLPIYGQISLQFADLHDRSSRMVAKGVISKEL 638
Query: 65 VWPMLRPDIFTGLRR 79
W R F LRR
Sbjct: 639 EWTEARRFFFWRLRR 653
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 28.4 bits (64), Expect = 0.22
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 9/48 (18%)
Query: 32 ERIENEIM----DQGKPVTWDDIAGLTFAKQTIQEV-----IVWPMLR 70
++ E + P+T+D + L + I+E + M+R
Sbjct: 287 KKCYLEQKTVCGENLPPLTYDQLKDLNLLDRCIKETLRLRPPIMIMMR 334
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 27.3 bits (61), Expect = 0.48
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 38 IMDQGKPVTWDDIAGLTFAKQTIQEVI 64
++ + VT+ D+AG AK+ ++E++
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIV 56
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 26.8 bits (60), Expect = 0.72
Identities = 5/63 (7%), Positives = 14/63 (22%), Gaps = 11/63 (17%)
Query: 32 ERIENEIMD--QGKPVTWDDIAGLTFAKQTIQEVI-----VWPMLR----PDIFTGLRRP 80
++ E ++ + L + + E + + G
Sbjct: 288 QKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPL 347
Query: 81 PKD 83
K
Sbjct: 348 EKG 350
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 26.4 bits (59), Expect = 1.00
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 38 IMDQGKPVTWDDIAGLTFAKQTIQEVI 64
++ + VT+ D+AG AK+ ++E++
Sbjct: 21 VLTEAPKVTFKDVAGAEEAKEELKEIV 47
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20,
substrate-assisted catalysis, alpha/beta barrel,
isofagomin inhibitor complex; HET: IFG; 1.75A
{Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB:
1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Length = 512
Score = 26.6 bits (59), Expect = 1.1
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 31 IERIENEIMDQGK-PVTWDDIAGLTFAKQTIQEVIVW 66
++R++ + GK V W +AG + + V W
Sbjct: 333 MKRVQPIVAKYGKTVVGWHQLAGAEPVEGAL--VQYW 367
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 26.1 bits (58), Expect = 1.4
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 38 IMDQGKPVTWDDIAGLTFAKQTIQEVI 64
++ + VT+ D+AG AK+ ++E++
Sbjct: 6 VLTEAPKVTFKDVAGAEEAKEELKEIV 32
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 26.2 bits (58), Expect = 1.5
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 32 ERIENEIMD--QGKPVTWDDIAGLTFAKQTIQE 62
E I EI + + DDI L + I E
Sbjct: 330 EAIIKEIQTVIGERDIKIDDIQKLKVMENFIYE 362
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 26.0 bits (58), Expect = 1.7
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 40 DQGKPVTWDDIAGLTFAKQTIQEVI 64
K VT+ D+ G A + ++EV+
Sbjct: 8 SGNKRVTFKDVGGAEEAIEELKEVV 32
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 25.7 bits (57), Expect = 1.7
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 45 VTWDDIAGLTFAKQTIQEVI 64
V++ D+AG+ AK ++E +
Sbjct: 3 VSFKDVAGMHEAKLEVREFV 22
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 25.7 bits (57), Expect = 1.8
Identities = 3/35 (8%), Positives = 8/35 (22%), Gaps = 1/35 (2%)
Query: 28 KVMIERIENEIMDQGKPVTWDDIAGLTFAKQTIQE 62
+ + + EI + + E
Sbjct: 285 EAL-RAVREEIQGGKHLRLEERQKNTPVFDSVLWE 318
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 25.9 bits (57), Expect = 1.9
Identities = 4/49 (8%), Positives = 14/49 (28%), Gaps = 2/49 (4%)
Query: 16 PELEDERYKGIDKVMIERIENEIMDQGKPVTWDDIAGLTFAKQTIQEVI 64
PE ++ ++ + + Q + + + E +
Sbjct: 293 PEALAAVRGELESIL--WQAEQPVSQTTTLPQKVLDSTPVLDSVLSESL 339
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 25.4 bits (56), Expect = 2.3
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 38 IMDQGKPVTWDDIAGLTFAKQTIQEVI 64
+ + T+ D+AG AK+ + E++
Sbjct: 2 LTEDQIKTTFADVAGCDEAKEEVAELV 28
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 25.3 bits (56), Expect = 2.7
Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 39 MDQGKP-VTWDDIAGLTFAKQTIQEVI 64
++ KP V + D+AG AK+ + E++
Sbjct: 1 INAEKPNVRFKDMAGNEEAKEEVVEIV 27
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 25.0 bits (55), Expect = 3.2
Identities = 5/48 (10%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 16 PELEDERYKGIDKVMIERIENEIMD-QGKPVTWDDIAGLTFAKQTIQE 62
PE + + + + + ++ ++ ++ L I+E
Sbjct: 288 PEAMKAATEEVKRTLENAGQKVSLEGNPICLSQAELNDLPVLDSIIKE 335
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease,
double strand DNA repair, protein-DNA CO hydrolase-DNA
complex; HET: DNA; 2.80A {Bacillus subtilis} PDB:
3u44_A*
Length = 1232
Score = 24.9 bits (54), Expect = 3.7
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 28 KVMIERIENEIMDQGKPVTWDDIAGLTF 55
V++ER+ +I + P+ D + +TF
Sbjct: 38 AVLVERMIRKITAEENPIDVDRLLVVTF 65
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 24.9 bits (55), Expect = 4.0
Identities = 5/27 (18%), Positives = 15/27 (55%)
Query: 37 EIMDQGKPVTWDDIAGLTFAKQTIQEV 63
E++ + + ++D+ L + Q ++E
Sbjct: 286 EVIGSKRYLDFEDLGRLQYLSQVLKES 312
>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid
synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A*
3tdc_A*
Length = 793
Score = 24.8 bits (54), Expect = 5.0
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 49 DIAGLTFAKQTIQEVIVWPMLRPDIFTGLRR 79
D AG K I +++ W R ++ LRR
Sbjct: 637 DTAGRMLEKGVIYDILEWKTARSFLYWRLRR 667
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 24.1 bits (52), Expect = 6.6
Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 11/58 (18%)
Query: 32 ERIENEIM----DQGKPVTWDDIAGLTFAKQTIQEVIVWPMLR--PDIFTGLRRPPKD 83
R+ EI G +T I + K + E LR P + R KD
Sbjct: 319 NRLAEEIRSVIKSNGGELTMGAIEKMELTKSVVYEC-----LRFEPPVTAQYGRAKKD 371
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 24.2 bits (53), Expect = 7.6
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Query: 32 ERIENEIMD-QGKPVTWDDIAGLTFAKQTIQEVIVWPMLR--PDIFTGLRRPPKD 83
E + EI + + + + + FA++ +E +R P + +R+ D
Sbjct: 290 EALRKEIEEFPAQLNYNNVMDEMPFAERCARES-----IRRDPPLLMLMRKVMAD 339
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 24.1 bits (52), Expect = 7.7
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 5/37 (13%)
Query: 32 ERIENEIMD-----QGKPVTWDDIAGLTFAKQTIQEV 63
++ EI VT + I + K + E
Sbjct: 301 TQLAEEIRGAIKSYGDGNVTLEAIEQMPLTKSVVYES 337
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.140 0.426
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,452,358
Number of extensions: 80641
Number of successful extensions: 303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 53
Length of query: 84
Length of database: 6,701,793
Length adjustment: 52
Effective length of query: 32
Effective length of database: 5,249,901
Effective search space: 167996832
Effective search space used: 167996832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)