RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4539
         (84 letters)



>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 258

 Score = 48.9 bits (115), Expect = 4e-09
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 45 VTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGL-RRPPK 82
          V +DD+ G       I+E++  P+  P +F  +  +PP+
Sbjct: 1  VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPR 39


>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 265

 Score = 47.5 bits (112), Expect = 1e-08
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 45 VTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGLRRPP 81
          VTW+DI GL   K+ +QE++ +P+  PD F      P
Sbjct: 4  VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTP 40


>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
          {Thermus thermophilus [TaxId: 274]}
          Length = 247

 Score = 41.4 bits (97), Expect = 2e-06
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 45 VTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGL-RRPPK 82
          VT+ D+AG   AK+ ++E++ + +  P  F  +  R PK
Sbjct: 6  VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPK 43


>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
          {Escherichia coli [TaxId: 562]}
          Length = 256

 Score = 40.2 bits (94), Expect = 6e-06
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 45 VTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGL-RRPPK 82
           T+ D+AG   AK+ + E++ + +  P  F  L  + PK
Sbjct: 9  TTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPK 46


>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
          {Thermus thermophilus [TaxId: 274]}
          Length = 239

 Score = 29.9 bits (66), Expect = 0.025
 Identities = 8/34 (23%), Positives = 13/34 (38%)

Query: 44 PVTWDDIAGLTFAKQTIQEVIVWPMLRPDIFTGL 77
          P T D+  G    KQ ++  +     R +    L
Sbjct: 5  PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHL 38


>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 253

 Score = 25.5 bits (54), Expect = 0.81
 Identities = 4/43 (9%), Positives = 12/43 (27%), Gaps = 1/43 (2%)

Query: 43 KPVTWDDIAGLTFAKQTIQEVIV-WPMLRPDIFTGLRRPPKDK 84
           P     + G   +   ++  +  W   + + F    +     
Sbjct: 9  APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGV 51


>d1wfya_ d.15.1.5 (A:) Regulator of G-protein signaling 14, RGS14
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 104

 Score = 23.2 bits (50), Expect = 4.0
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 6  PSGPRGKELEPELEDERYKGIDKVMIERIENEIMDQGKPVT 46
          P+    + L+P L          V+    E + MD   PV+
Sbjct: 36 PTKRLQEALQPILAKHGLSLDQVVLHRPGEKQPMDLENPVS 76


>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 404

 Score = 22.6 bits (48), Expect = 8.1
 Identities = 10/31 (32%), Positives = 13/31 (41%)

Query: 49  DIAGLTFAKQTIQEVIVWPMLRPDIFTGLRR 79
           D +    AK  I + + W   R   F  LRR
Sbjct: 284 DRSSRMVAKGVISKELEWTEARRFFFWRLRR 314


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.140    0.426 

Gapped
Lambda     K      H
   0.267   0.0633    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 357,787
Number of extensions: 15502
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 12
Length of query: 84
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 35
Effective length of database: 1,734,826
Effective search space: 60718910
Effective search space used: 60718910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)