BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy454
(134 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P70196|TRAF6_MOUSE TNF receptor-associated factor 6 OS=Mus musculus GN=Traf6 PE=1 SV=2
Length = 530
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 11/129 (8%)
Query: 9 YSACFYSSCFGYRFCTRVNISREDAQ----YLSLFIHLVQGENDDILDWPFVGRIRFTAL 64
+S FY+ GY+ C R+++ AQ Y+SLF+H +QGE D L WPF G IR T L
Sbjct: 384 HSPGFYTGRPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTIL 443
Query: 65 NTSSEF--SITDEIQSDK-NFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDD 121
+ S +E+ K +F+RP N K FG+ F+ + + +G ++DD
Sbjct: 444 DQSEALIRQNHEEVMDAKPELLAFQRP-TIPRNPKGFGYVTFMHLEALR---QGTFIKDD 499
Query: 122 TFVIKTQVT 130
T +++ +V+
Sbjct: 500 TLLVRCEVS 508
>sp|B5DF45|TRAF6_RAT TNF receptor-associated factor 6 OS=Rattus norvegicus GN=Traf6 PE=2
SV=1
Length = 530
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 11/129 (8%)
Query: 9 YSACFYSSCFGYRFCTRVNISREDAQ----YLSLFIHLVQGENDDILDWPFVGRIRFTAL 64
+S FY+ GY+ C R+++ AQ Y+SLF+H +QGE D L WPF G IR T L
Sbjct: 384 HSPGFYTGRPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTIL 443
Query: 65 NTSSEF--SITDEIQSDK-NFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDD 121
+ S +E+ K +F+RP N K FG+ F+ + + +G ++DD
Sbjct: 444 DQSEAVIRQNHEEVMDAKPELLAFQRP-TIPRNPKGFGYVTFMHLEALR---QGTFIKDD 499
Query: 122 TFVIKTQVT 130
T +++ +V+
Sbjct: 500 TLLVRCEVS 508
>sp|Q3ZCC3|TRAF6_BOVIN TNF receptor-associated factor 6 OS=Bos taurus GN=TRAF6 PE=2 SV=1
Length = 542
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 13/130 (10%)
Query: 9 YSACFYSSCFGYRFCTRVNISREDAQ----YLSLFIHLVQGENDDILDWPFVGRIRFTAL 64
+S FY+ GY+ C R+++ AQ Y+SLF+H +QGE D L WPF G IR T L
Sbjct: 396 HSPGFYTGKPGYKLCMRLHLQLPSAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTIL 455
Query: 65 NTSSEFSIT---DEIQSDK-NFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMED 120
+ SE ++ +EI K +F+RP N K FG+ F+ + + R F+ +D
Sbjct: 456 D-QSEAAVRQNHEEIMDAKPELLAFQRP-TIPRNPKGFGYVTFMHLEALRQ--RTFI-KD 510
Query: 121 DTFVIKTQVT 130
DT +++ +V+
Sbjct: 511 DTLLVRCEVS 520
>sp|A7XUJ6|TRAF6_PIG TNF receptor-associated factor 6 OS=Sus scrofa GN=TRAF6 PE=2 SV=1
Length = 541
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 49/130 (37%), Positives = 72/130 (55%), Gaps = 13/130 (10%)
Query: 9 YSACFYSSCFGYRFCTRVNISREDAQ----YLSLFIHLVQGENDDILDWPFVGRIRFTAL 64
+S FY+ GY+ C R+++ AQ Y+SLF+H +QGE D L WPF G IR T L
Sbjct: 395 HSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTIL 454
Query: 65 NTSSEFSIT---DEIQSDK-NFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMED 120
+ SE I +EI K +F+RP N K FG+ F+ + D L R F+ +D
Sbjct: 455 D-QSEAPIRQNHEEIMDAKPELLAFQRP-TIPRNPKGFGYVTFMHL-DALRQ-RTFI-KD 509
Query: 121 DTFVIKTQVT 130
DT +++ +V+
Sbjct: 510 DTLLVRCEVS 519
>sp|Q28DL4|TRAF6_XENTR TNF receptor-associated factor 6 OS=Xenopus tropicalis GN=traf6
PE=2 SV=1
Length = 558
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 13/133 (9%)
Query: 9 YSACFYSSCFGYRFCTRVNISREDAQ----YLSLFIHLVQGENDDILDWPFVGRIRFTAL 64
+S FY+ GY+ C R+++ AQ Y+SLF+H +QGE D +L WP G IR + L
Sbjct: 412 HSQGFYTGKPGYKLCLRLHLQLPSAQRCANYISLFVHTMQGEYDSLLPWPLQGTIRLSIL 471
Query: 65 NTSSEFSITDE---IQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDD 121
+ S ++ D+ + + +F+RP N K FG+ F+ + + R ++ ++D
Sbjct: 472 DQSEGVAMQDQEEVMDTKPELLAFQRP-TVARNPKGFGYVTFMHLQALKQ--RQYV-KND 527
Query: 122 TFVIKTQVTEMTH 134
T +++ VT TH
Sbjct: 528 TLLVRCSVT--TH 538
>sp|B6CJY5|TRAF6_MACMU TNF receptor-associated factor 6 OS=Macaca mulatta GN=TRAF6 PE=2
SV=1
Length = 522
Score = 69.3 bits (168), Expect = 6e-12, Method: Composition-based stats.
Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 13/130 (10%)
Query: 9 YSACFYSSCFGYRFCTRVNISREDAQ----YLSLFIHLVQGENDDILDWPFVGRIRFTAL 64
+S FY+ GY+ C R+++ AQ Y+SLF+H +QGE D L WPF G IR T L
Sbjct: 376 HSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTIL 435
Query: 65 NTSSEFSIT---DEIQSDK-NFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMED 120
+ SE + +EI K + +F+RP N K FG+ F+ + + R F+ +D
Sbjct: 436 D-QSEAPVRQNHEEIMDAKPDLLAFQRP-TIPRNPKGFGYVTFMHLEALRQ--RTFI-KD 490
Query: 121 DTFVIKTQVT 130
DT +++ +V+
Sbjct: 491 DTLLVRCEVS 500
>sp|B6CJY4|TRAF6_CERAT TNF receptor-associated factor 6 OS=Cercocebus atys GN=TRAF6 PE=2
SV=1
Length = 522
Score = 69.3 bits (168), Expect = 6e-12, Method: Composition-based stats.
Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 13/130 (10%)
Query: 9 YSACFYSSCFGYRFCTRVNISREDAQ----YLSLFIHLVQGENDDILDWPFVGRIRFTAL 64
+S FY+ GY+ C R+++ AQ Y+SLF+H +QGE D L WPF G IR T L
Sbjct: 376 HSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTIL 435
Query: 65 NTSSEFSIT---DEIQSDK-NFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMED 120
+ SE + +EI K + +F+RP N K FG+ F+ + + R F+ +D
Sbjct: 436 D-QSEAPVRQNHEEIMDAKPDLLAFQRP-TIPRNPKGFGYVTFMHLEALRQ--RTFI-KD 490
Query: 121 DTFVIKTQVT 130
DT +++ +V+
Sbjct: 491 DTLLVRCEVS 500
>sp|Q9Y4K3|TRAF6_HUMAN TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1
Length = 522
Score = 68.9 bits (167), Expect = 9e-12, Method: Composition-based stats.
Identities = 46/130 (35%), Positives = 71/130 (54%), Gaps = 13/130 (10%)
Query: 9 YSACFYSSCFGYRFCTRVNISREDAQ----YLSLFIHLVQGENDDILDWPFVGRIRFTAL 64
+S FY+ GY+ C R+++ AQ Y+SLF+H +QGE D L WPF G IR T L
Sbjct: 376 HSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTIL 435
Query: 65 NTSSEFSIT---DEIQSDK-NFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMED 120
+ SE + +EI K +F+RP N K FG+ F+ + + R F+ +D
Sbjct: 436 D-QSEAPVRQNHEEIMDAKPELLAFQRP-TIPRNPKGFGYVTFMHLEALRQ--RTFI-KD 490
Query: 121 DTFVIKTQVT 130
DT +++ +V+
Sbjct: 491 DTLLVRCEVS 500
>sp|Q6IWL4|TRAF6_DANRE TNF receptor-associated factor 6 OS=Danio rerio GN=traf6 PE=2 SV=2
Length = 542
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 8/127 (6%)
Query: 8 FYSACFYSSCFGYRFCTRVNISREDA----QYLSLFIHLVQGENDDILDWPFVGRIRFTA 63
+S FY+ GY+ C R+++ A ++SLF+H +QGE D L WP G IR
Sbjct: 399 LHSPPFYTGRPGYKLCLRLHLQTPSAPRCSNFISLFVHTMQGEFDSQLSWPLQGTIRLAV 458
Query: 64 LNTSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTF 123
L+ + +++ + +F+RP N K FG+ F+ + + RGF+ E D
Sbjct: 459 LDQVEGQHHIEVMETKPDLQAFQRP-TVMRNPKGFGYVTFLHLQALRQ--RGFVKE-DVL 514
Query: 124 VIKTQVT 130
+++ +VT
Sbjct: 515 LVRCEVT 521
>sp|Q6DJN2|TRF6B_XENLA TNF receptor-associated factor 6-B OS=Xenopus laevis GN=traf6-b
PE=2 SV=1
Length = 556
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 9 YSACFYSSCFGYRFCTRVNISREDAQ----YLSLFIHLVQGENDDILDWPFVGRIRFTAL 64
+S FY+ GY+ C R+++ AQ Y+SLF+H +QGE D +L WP G IR + L
Sbjct: 410 HSPGFYTGKPGYKLCLRLHLQLPSAQRCANYISLFVHTMQGEYDSLLPWPLHGTIRLSIL 469
Query: 65 NTSSEFSITDE---IQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDD 121
+ S I D+ + + + +F+RP N K FG+ F+ + + R ++ D
Sbjct: 470 DQSEGAIIQDQEEVMDTKPDLLAFQRPTT-QRNPKGFGYVTFMHLNTLKQ--RQYVKNDT 526
Query: 122 TFV 124
FV
Sbjct: 527 LFV 529
>sp|Q3MV19|TRF6A_XENLA TNF receptor-associated factor 6-A OS=Xenopus laevis GN=traf6-a
PE=1 SV=1
Length = 556
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 70/128 (54%), Gaps = 11/128 (8%)
Query: 9 YSACFYSSCFGYRFCTRVNISREDAQ----YLSLFIHLVQGENDDILDWPFVGRIRFTAL 64
+S FY+ GY+ C R+++ AQ Y+SLF+H +QG+ D +L WP G IR + L
Sbjct: 410 HSPGFYTGDPGYKLCLRLHLQLPSAQRCANYISLFVHTMQGDYDSLLPWPLQGTIRLSIL 469
Query: 65 NTSSEFSITDEIQ---SDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDD 121
+ S + D+++ + + +F+RP N K FG+ F+ + + R ++ ++D
Sbjct: 470 DQSESTARQDQVEVMDTKPDLLAFQRPTA-PRNPKGFGYVTFMHLNTLKQ--RQYV-KND 525
Query: 122 TFVIKTQV 129
T +++ V
Sbjct: 526 TLLVRCSV 533
>sp|O00463|TRAF5_HUMAN TNF receptor-associated factor 5 OS=Homo sapiens GN=TRAF5 PE=1 SV=2
Length = 557
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 9 YSACFYSSCFGYRFCTRVNISREDA---QYLSLFIHLVQGENDDILDWPFVGRIRFTALN 65
+S FY+S GYR C R ++ + + +LSL+ +++GE D +L WPF R+ L+
Sbjct: 429 FSQSFYTSRCGYRLCARAYLNGDGSGRGSHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLD 488
Query: 66 TSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVI 125
S + +I + + D N SFKRP A G F+ VL+ + ++DDT +
Sbjct: 489 QSGKKNIMETFKPDPNSSSFKRPDGEM--NIASGCPRFV-AHSVLENAKNAYIKDDTLFL 545
Query: 126 KTQV 129
K V
Sbjct: 546 KVAV 549
>sp|Q12933|TRAF2_HUMAN TNF receptor-associated factor 2 OS=Homo sapiens GN=TRAF2 PE=1 SV=2
Length = 501
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 9 YSACFYSSCFGYRFCTRVNISRED---AQYLSLFIHLVQGENDDILDWPFVGRIRFTALN 65
+S FY+S +GY+ C R+ ++ + +LSLF +++G ND +L WPF ++ L+
Sbjct: 377 FSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLD 436
Query: 66 TSSEFSITDEIQSDKNFDSFKRPVN 90
++ + D + D SF+RPVN
Sbjct: 437 QNNREHVIDAFRPDVTSSSFQRPVN 461
>sp|Q13077|TRAF1_HUMAN TNF receptor-associated factor 1 OS=Homo sapiens GN=TRAF1 PE=1 SV=1
Length = 416
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 67/129 (51%), Gaps = 6/129 (4%)
Query: 8 FYSACFYSSCFGYRFCTRVNISREDA---QYLSLFIHLVQGENDDILDWPFVGRIRFTAL 64
+S FY++ +GY+ C R+ ++ + +LSLFI +++GE D +L WPF ++ F L
Sbjct: 291 LFSPAFYTAKYGYKLCLRLYLNGDGTGKRTHLSLFIVIMRGEYDALLPWPFRNKVTFMLL 350
Query: 65 NTSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFV 124
+ ++ D + D + SF+RP + A G F ++ + P ++ +DDT
Sbjct: 351 DQNNREHAIDAFRPDLSSASFQRPQS--ETNVASGCPLFFPLSKLQSPKHAYV-KDDTMF 407
Query: 125 IKTQVTEMT 133
+K V T
Sbjct: 408 LKCIVETST 416
>sp|P39428|TRAF1_MOUSE TNF receptor-associated factor 1 OS=Mus musculus GN=Traf1 PE=1 SV=2
Length = 409
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 67/125 (53%), Gaps = 6/125 (4%)
Query: 8 FYSACFYSSCFGYRFCTRVNISREDA---QYLSLFIHLVQGENDDILDWPFVGRIRFTAL 64
+S FY++ +GY+ C R+ ++ + + +LSLFI +++GE D +L WPF ++ F L
Sbjct: 284 LFSPAFYTAKYGYKLCLRLYLNGDGSGKKTHLSLFIVIMRGEYDALLPWPFRNKVTFMLL 343
Query: 65 NTSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFV 124
+ ++ D + D + SF+RP + A G F ++ + P ++ +DDT
Sbjct: 344 DQNNREHAIDAFRPDLSSASFQRPQS--ETNVASGCPLFFPLSKLQSPKHAYV-KDDTMF 400
Query: 125 IKTQV 129
+K V
Sbjct: 401 LKCIV 405
>sp|Q60803|TRAF3_MOUSE TNF receptor-associated factor 3 OS=Mus musculus GN=Traf3 PE=1 SV=2
Length = 567
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 9/126 (7%)
Query: 8 FYSACFYSSCFGYRFCTRVNISRE---DAQYLSLFIHLVQGENDDILDWPFVGRIRFTAL 64
YS FY+ FGY+ C RV ++ + +LSLF +++GE D +L WPF ++ +
Sbjct: 439 LYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLM 498
Query: 65 NT-SSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTF 123
+ SS + D + D N SFK+P A G F+ VL+ G ++DDT
Sbjct: 499 DQGSSRRHLGDAFKPDPNSSSFKKPTGEM--NIASGCPVFV-AQTVLE--NGTYIKDDTI 553
Query: 124 VIKTQV 129
IK V
Sbjct: 554 FIKVIV 559
>sp|Q13114|TRAF3_HUMAN TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2
Length = 568
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 9/126 (7%)
Query: 8 FYSACFYSSCFGYRFCTRVNISRE---DAQYLSLFIHLVQGENDDILDWPFVGRIRFTAL 64
YS FY+ FGY+ C RV ++ + +LSLF +++GE D +L WPF ++ +
Sbjct: 440 LYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLM 499
Query: 65 NT-SSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTF 123
+ SS + D + D N SFK+P A G F+ VL+ G ++DDT
Sbjct: 500 DQGSSRRHLGDAFKPDPNSSSFKKPTGEM--NIASGCPVFV-AQTVLE--NGTYIKDDTI 554
Query: 124 VIKTQV 129
IK V
Sbjct: 555 FIKVIV 560
>sp|P39429|TRAF2_MOUSE TNF receptor-associated factor 2 OS=Mus musculus GN=Traf2 PE=1 SV=1
Length = 501
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 9 YSACFYSSCFGYRFCTRVNISRED---AQYLSLFIHLVQGENDDILDWPFVGRIRFTALN 65
+S FY+S +GY+ C RV ++ + +LSLF +++G ND +L WPF ++ L+
Sbjct: 377 FSPAFYTSRYGYKMCLRVYLNGDGTGRGTHLSLFFVVMKGPNDALLQWPFNQKVTLMLLD 436
Query: 66 TSSEFSITDEIQSDKNFDSFKRPVN 90
++ + D + D SF+RPV+
Sbjct: 437 HNNREHVIDAFRPDVTSSSFQRPVS 461
>sp|P70191|TRAF5_MOUSE TNF receptor-associated factor 5 OS=Mus musculus GN=Traf5 PE=1 SV=1
Length = 558
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 9 YSACFYSSCFGYRFCTRVNISREDA---QYLSLFIHLVQGENDDILDWPFVGRIRFTALN 65
+S FY+S GYR C R ++ + + +LSL+ +++GE D +L WPF R+ L+
Sbjct: 429 FSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLD 488
Query: 66 TSSEFS-ITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFV 124
S + + I + ++D N SFKRP A G F+ L+ + ++DDT
Sbjct: 489 QSGKKNHIVETFKADPNSSSFKRPDGEM--NIASGCPRFVS-HSTLENSKNTYIKDDTLF 545
Query: 125 IKTQV 129
+K V
Sbjct: 546 LKVAV 550
>sp|Q9BUZ4|TRAF4_HUMAN TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1
Length = 470
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 66/128 (51%), Gaps = 14/128 (10%)
Query: 9 YSACFYSSCFGYRFCTRVNISRE---DAQYLSLFIHLVQGENDDILDWPFVGRIRFTALN 65
+S FY+ +GY+ ++ + +LSL+I ++ G D++L+WPF R+ F+ L+
Sbjct: 333 FSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPFARRVTFSLLD 392
Query: 66 TS-----SEFSITDEIQSDKNFDSFKRPVNF--FLNKKA--FGFNNFIRVADVLDPGRGF 116
S +T+ D N+ +F++P + L++ + FG+ FI D+ R +
Sbjct: 393 QSDPGLAKPQHVTETFHPDPNWKNFQKPGTWRGSLDESSLGFGYPKFISHQDIRK--RNY 450
Query: 117 LMEDDTFV 124
+ +D F+
Sbjct: 451 VRDDAVFI 458
>sp|Q61382|TRAF4_MOUSE TNF receptor-associated factor 4 OS=Mus musculus GN=Traf4 PE=1 SV=2
Length = 470
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 66/128 (51%), Gaps = 14/128 (10%)
Query: 9 YSACFYSSCFGYRFCTRVNISRE---DAQYLSLFIHLVQGENDDILDWPFVGRIRFTALN 65
+S FY+ +GY+ ++ + +LS++I ++ G D++L+WPF R+ F+ L+
Sbjct: 333 FSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSIYIRVLPGAFDNLLEWPFARRVTFSLLD 392
Query: 66 TS-----SEFSITDEIQSDKNFDSFKRPVNF--FLNKKA--FGFNNFIRVADVLDPGRGF 116
S +T+ D N+ +F++P + L++ + FG+ FI D+ R +
Sbjct: 393 QSDPGLAKPQHVTETFHPDPNWKNFQKPGTWRGSLDESSLGFGYPKFISHQDIRK--RNY 450
Query: 117 LMEDDTFV 124
+ +D F+
Sbjct: 451 VRDDAVFI 458
>sp|P34568|BAT43_CAEEL BTB and MATH domain-containing protein 43 OS=Caenorhabditis elegans
GN=bath-43 PE=3 SV=2
Length = 451
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 19/123 (15%)
Query: 2 KEINRYFYSACFYSSCF-GYRFCTRVN---ISREDAQYLSLFIHLVQGENDDILDWPFVG 57
+E+ S+ F + C ++C R+N + E YLSL++ LVQ ++
Sbjct: 110 EEMGEVLKSSTFSAGCNDKLKWCLRINPKGLDEESRDYLSLYLLLVQCNKSEVR-----A 164
Query: 58 RIRFTALNTSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFL 117
+ +F+ LN E T ++S + + F+ K +GF FIR +LD G L
Sbjct: 165 KFKFSILNAKREE--TKAMESQRAYR--------FVQGKDWGFKKFIRRDFLLDEANGLL 214
Query: 118 MED 120
D
Sbjct: 215 PGD 217
>sp|P28826|MEP1B_RAT Meprin A subunit beta OS=Rattus norvegicus GN=Mep1b PE=1 SV=3
Length = 704
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 24/146 (16%)
Query: 9 YSACFYSSCFGYRFCTRVNISREDAQYLSLFIHLVQGENDDILDWPFVGRIRFTAL---- 64
YS FYSS GY F ++N+ + L+ HL+ G NDD L WP + L
Sbjct: 449 YSPPFYSS-KGYAF--QINLDLTSPTNVGLYFHLISGANDDQLQWPCPWQQATMTLLDQN 505
Query: 65 -----NTSSEFSI-TDEIQSDKNFDS-FKRPVN-----FFLNKKAF----GFNNFIRVAD 108
S++ SI TD +D N + RP FF N F G+ + +
Sbjct: 506 PDIRQRMSNQRSITTDPKMTDDNGSYLWDRPSKVGVEAFFPNGTQFSRGRGYGTSVFITQ 565
Query: 109 VLDPGRGFLMEDDTFVIKTQVTEMTH 134
R FL DD +++ T V +++H
Sbjct: 566 ERLKSREFLKGDDVYILLT-VEDISH 590
>sp|Q16819|MEP1A_HUMAN Meprin A subunit alpha OS=Homo sapiens GN=MEP1A PE=1 SV=2
Length = 746
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 10 SACFYSSCFGYRF-CTRVNISREDAQYLSLFIHLVQGENDDILDWPFVGR 58
S FY+S GY F T SRE + YL L H+ GEND IL+WP R
Sbjct: 456 SPRFYNS-EGYGFGVTLYPNSRESSGYLRLAFHVCSGENDAILEWPVENR 504
>sp|Q16820|MEP1B_HUMAN Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3
Length = 701
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 5 NRYFYSACFYSSCFGYRFCTRVNISREDAQYLSLFIHLVQGENDDILDWP 54
N YS FYSS GY F +N++ ++ HL+ G NDD L WP
Sbjct: 445 NGTLYSPPFYSS-KGYAFQIYLNLAH--VTNAGIYFHLISGANDDQLQWP 491
>sp|Q61847|MEP1B_MOUSE Meprin A subunit beta OS=Mus musculus GN=Mep1b PE=1 SV=2
Length = 704
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 9 YSACFYSSCFGYRFCTRVNISREDAQYLSLFIHLVQGENDDILDWP 54
YS FYSS GY F ++ + + + ++ HL+ G NDD L WP
Sbjct: 450 YSPPFYSS-KGYAF--QIYMDLRSSTNVGIYFHLISGANDDQLQWP 492
>sp|Q6U7I1|UBP7_CHICK Ubiquitin carboxyl-terminal hydrolase 7 OS=Gallus gallus GN=USP7
PE=2 SV=1
Length = 1101
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 84 SFKRPVN--FFLNKKAFGFNNFIRVADVLDPGRGFLMEDD-TFVIKTQV 129
SF R ++ FF + +GF+NF+ ++V DP +GF+ ED TF + Q
Sbjct: 149 SFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIEEDKVTFEVYVQA 197
>sp|Q64230|MEP1A_RAT Meprin A subunit alpha OS=Rattus norvegicus GN=Mep1a PE=1 SV=2
Length = 748
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 32 DAQYLSLFIHLVQGENDDILDWPFVGR 58
++ YL L HL G+ND IL+WP R
Sbjct: 481 NSGYLGLAFHLYSGDNDVILEWPVENR 507
>sp|Q8T126|FNKC_DICDI Probable inactive serine/threonine-protein kinase fnkC
OS=Dictyostelium discoideum GN=fnkC PE=3 SV=1
Length = 1304
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 84 SFKRPVNFFLNKKA--FGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVTEM 132
S K V + N K+ FG+ FI V+ ++DP GFL+ +DT ++ + ++
Sbjct: 1245 SIKYWVQYRFNSKSNSFGYPKFIGVSTLMDPDMGFLV-NDTIILNVSILQL 1294
>sp|Q4VSI4|UBP7_RAT Ubiquitin carboxyl-terminal hydrolase 7 OS=Rattus norvegicus
GN=Usp7 PE=1 SV=1
Length = 1103
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 84 SFKRPVN--FFLNKKAFGFNNFIRVADVLDPGRGFLMED 120
SF R ++ FF + +GF+NF+ ++V DP +GF+ +D
Sbjct: 150 SFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDD 188
>sp|Q93009|UBP7_HUMAN Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sapiens GN=USP7
PE=1 SV=2
Length = 1102
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 84 SFKRPVN--FFLNKKAFGFNNFIRVADVLDPGRGFLMED 120
SF R ++ FF + +GF+NF+ ++V DP +GF+ +D
Sbjct: 149 SFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDD 187
>sp|Q6A4J8|UBP7_MOUSE Ubiquitin carboxyl-terminal hydrolase 7 OS=Mus musculus GN=Usp7
PE=1 SV=1
Length = 1103
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 84 SFKRPVN--FFLNKKAFGFNNFIRVADVLDPGRGFLMED 120
SF R ++ FF + +GF+NF+ ++V DP +GF+ +D
Sbjct: 150 SFSRRISHLFFHEENDWGFSNFMAWSEVTDPEKGFIDDD 188
>sp|P28825|MEP1A_MOUSE Meprin A subunit alpha OS=Mus musculus GN=Mep1a PE=1 SV=4
Length = 747
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 32 DAQYLSLFIHLVQGENDDILDWPFVGR 58
++ +L L HL G+ND IL+WP R
Sbjct: 479 NSGFLGLTFHLYSGDNDAILEWPVENR 505
>sp|Q6P5D8|SMHD1_MOUSE Structural maintenance of chromosomes flexible hinge
domain-containing protein 1 OS=Mus musculus GN=Smchd1
PE=1 SV=2
Length = 2007
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 15/91 (16%)
Query: 21 RFCTRVNISREDAQYLSLFIHLVQGENDD---ILDWPFVGRIR-FTALNTSSEFSITDEI 76
R CT N ++ L HL Q E+D ++ W + L T + +I DE
Sbjct: 1709 RLCTLPNYTKRSGDILGKIAHLAQIEDDRAAMVISWHLASDMDCVVTLTTDAARAIYDET 1768
Query: 77 QS-----------DKNFDSFKRPVNFFLNKK 96
Q K +KRP+ F N K
Sbjct: 1769 QGRQQVLPLDSIYRKTLPDWKRPLPHFRNGK 1799
>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana
GN=UBP13 PE=1 SV=1
Length = 1115
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 17/120 (14%)
Query: 14 YSSCF---GYRFCTRVNISREDAQYLSLFIHLVQGENDDILDWPFVGRIRFTALN-TSSE 69
YS F GY++ + + +LS+++ + N W + +N ++
Sbjct: 72 YSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADAANLP-YGWSRYSQFSLAVVNQVNNR 130
Query: 70 FSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQV 129
+SI E Q F + +GF +F+ ++++ +P RG+L+ +DT +I+ +V
Sbjct: 131 YSIRKETQH-----------QFNARESDWGFTSFMPLSELYEPTRGYLV-NDTVLIEAEV 178
>sp|C5BSJ5|CYSN_TERTT Sulfate adenylyltransferase subunit 1 OS=Teredinibacter turnerae
(strain ATCC 39867 / T7901) GN=cysN PE=3 SV=1
Length = 468
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 73 TDEIQSDKNFDSFKRPVNFFLNKKAFGFNNF 103
T EI SDKN D F+ PV F+N+ F F
Sbjct: 230 TVEIASDKNADDFRFPVQ-FVNRPNLNFRGF 259
>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana
GN=UBP12 PE=1 SV=2
Length = 1116
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Query: 98 FGFNNFIRVADVLDPGRGFLMEDDTFVIKTQV 129
+GF +F+ ++++ DP RG+L+ +DT +++ +V
Sbjct: 149 WGFTSFMPLSELYDPSRGYLV-NDTVLVEAEV 179
>sp|Q6FN70|DSE1_CANGA Protein DSE1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=DSE1 PE=3 SV=1
Length = 567
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 61 FTALNTSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNN 102
F + + + + TD D+FKRPV FL++K +NN
Sbjct: 511 FDSYSDNESANTTDNDNELAYMDTFKRPVPAFLDEKVAAYNN 552
>sp|P28264|FTSA_BACSU Cell division protein FtsA OS=Bacillus subtilis (strain 168)
GN=ftsA PE=1 SV=2
Length = 440
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 35 YLSLFI-----HLVQGE-NDDILDWPFVGRIRFTALNTSSEFSITDEIQS-DKNFDSFKR 87
Y+SL I ++ GE DD L+ VG + L S I + + S K FD +R
Sbjct: 7 YVSLDIGTSNTKVIVGEMTDDSLNIIGVGNVPSEGLKKGSIVDIDETVHSIRKAFDQAER 66
Query: 88 PVNFFLNKKAFGFN-NFIRVAD 108
V F L K G N N+I + D
Sbjct: 67 MVGFPLRKAIVGVNGNYINIQD 88
>sp|A8G6Z2|RIMP_PROM2 Ribosome maturation factor RimP OS=Prochlorococcus marinus (strain
MIT 9215) GN=rimP PE=3 SV=1
Length = 155
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 9/52 (17%)
Query: 46 ENDDILDWPFVGRIRFTALNTSSEFSITDEIQSDKNFDSFKR-PVNFFLNKK 96
EN ++L+ +V I S ++DE+ SD++F +FK PVN LN+K
Sbjct: 67 ENSNLLNCSYVLEI--------SSQGVSDELTSDRDFKTFKGFPVNVQLNQK 110
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.142 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,333,209
Number of Sequences: 539616
Number of extensions: 1796667
Number of successful extensions: 4167
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 4108
Number of HSP's gapped (non-prelim): 60
length of query: 134
length of database: 191,569,459
effective HSP length: 100
effective length of query: 34
effective length of database: 137,607,859
effective search space: 4678667206
effective search space used: 4678667206
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)