Query psy454
Match_columns 134
No_of_seqs 119 out of 810
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 19:43:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy454.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/454hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03778 MATH_TRAF2 Tumor Necro 100.0 4.2E-39 9.2E-44 226.4 13.6 122 5-130 40-164 (164)
2 cd03780 MATH_TRAF5 Tumor Necro 100.0 1.5E-37 3.3E-42 216.4 13.2 121 7-130 24-148 (148)
3 cd03779 MATH_TRAF1 Tumor Necro 100.0 3.3E-37 7E-42 214.2 12.9 122 6-130 23-147 (147)
4 cd03777 MATH_TRAF3 Tumor Necro 100.0 1.1E-35 2.3E-40 213.9 13.8 120 7-131 62-185 (186)
5 cd03771 MATH_Meprin Meprin fam 100.0 1.2E-34 2.5E-39 204.9 13.1 122 5-130 21-167 (167)
6 cd03783 MATH_Meprin_Alpha Mepr 100.0 1.2E-34 2.5E-39 203.5 12.1 123 4-130 20-167 (167)
7 cd03782 MATH_Meprin_Beta Mepri 100.0 2.4E-34 5.2E-39 201.2 12.1 123 4-130 20-167 (167)
8 cd03776 MATH_TRAF6 Tumor Necro 100.0 4.3E-34 9.4E-39 198.8 12.7 120 7-130 24-147 (147)
9 cd03781 MATH_TRAF4 Tumor Necro 100.0 1.8E-33 3.9E-38 197.2 13.0 123 5-130 22-154 (154)
10 cd00270 MATH_TRAF_C Tumor Necr 100.0 6E-32 1.3E-36 187.9 13.2 123 4-130 21-149 (149)
11 cd03773 MATH_TRIM37 Tripartite 99.9 1.4E-24 3.1E-29 147.9 10.9 107 3-131 19-131 (132)
12 cd03774 MATH_SPOP Speckle-type 99.9 4.1E-24 8.9E-29 147.1 12.2 112 4-133 21-138 (139)
13 cd03775 MATH_Ubp21p Ubiquitin- 99.9 3.5E-24 7.6E-29 146.8 11.4 113 4-130 13-134 (134)
14 cd03772 MATH_HAUSP Herpesvirus 99.9 7.1E-23 1.5E-27 140.7 12.9 111 5-131 16-132 (137)
15 cd00121 MATH MATH (meprin and 99.9 1.3E-20 2.8E-25 125.2 12.9 111 4-130 14-126 (126)
16 PF00917 MATH: MATH domain; I 99.8 4.5E-20 9.7E-25 122.5 9.9 106 8-131 14-119 (119)
17 smart00061 MATH meprin and TRA 99.6 1.9E-15 4.1E-20 96.3 8.9 82 4-104 14-95 (95)
18 KOG0297|consensus 99.5 1.1E-14 2.3E-19 115.5 2.7 83 5-91 301-386 (391)
19 COG5077 Ubiquitin carboxyl-ter 99.0 6.7E-10 1.5E-14 92.9 6.5 116 5-133 52-172 (1089)
20 KOG1987|consensus 98.0 7E-05 1.5E-09 57.1 9.7 107 7-132 19-126 (297)
21 KOG1863|consensus 97.3 0.00034 7.4E-09 62.4 4.5 110 7-132 42-152 (1093)
22 smart00137 MAM Domain in mepri 41.5 1.1E+02 0.0023 20.9 5.6 37 6-42 63-99 (161)
23 KOG3325|consensus 35.3 38 0.00082 24.0 2.3 31 36-66 52-87 (183)
24 cd06263 MAM Meprin, A5 protein 34.3 1.2E+02 0.0027 20.2 4.9 37 7-43 60-96 (157)
25 PF06565 DUF1126: Repeat of un 30.4 38 0.00083 17.3 1.4 10 117-126 5-14 (33)
26 PF00629 MAM: MAM domain; Int 25.7 1.5E+02 0.0032 19.4 4.1 36 7-43 62-97 (160)
27 PF08922 DUF1905: Domain of un 22.9 1.6E+02 0.0035 17.9 3.5 15 17-31 39-53 (80)
28 COG5033 TFG3 Transcription ini 22.3 93 0.002 23.2 2.6 40 5-44 69-112 (225)
No 1
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=100.00 E-value=4.2e-39 Score=226.42 Aligned_cols=122 Identities=31% Similarity=0.602 Sum_probs=111.8
Q ss_pred CceEEecceEeCCCCeEEEEEEEECCCC---CCcEEEEEEEecCCCCCCCCCccceEEEEEEEeCCCCCeeeEEeecCCC
Q psy454 5 NRYFYSACFYSSCFGYRFCTRVNISRED---AQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTSSEFSITDEIQSDKN 81 (134)
Q Consensus 5 ~~~~~S~~F~~~~~Gy~w~l~vyp~g~~---~~~lsv~l~l~~g~~D~~l~Wp~~~~~~l~lldq~~~~~~~~~~~~~~~ 81 (134)
...++||+||++.+||+|+|++||||.+ ++|||||++|++|++|+.|+|||..+++|+||||.+++|+..++.|+++
T Consensus 40 ~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~~~itl~llDQ~~r~hi~~~~~pd~~ 119 (164)
T cd03778 40 IPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVT 119 (164)
T ss_pred CceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCceeeEEEEEEECCCCCCcceeEEEcCcc
Confidence 3589999999999999999999999987 7799999999999999999999999999999999988899999999988
Q ss_pred CCccCCCcccccccccccccceeecccccCCCCCCCccCCeEEEEEEEE
Q psy454 82 FDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVT 130 (134)
Q Consensus 82 ~~~f~~p~~~~~~~~~~G~~~fi~~~~L~~~~~~~yl~~d~l~i~~~v~ 130 (134)
..+|+||..+ .| .+||++.||++++| ++ .++||+||+|+|+|.|.
T Consensus 120 ~~~f~RP~~~-~n-~~~G~~~Fv~l~~l-~~-~~~Yv~dDtlfIk~~Vd 164 (164)
T cd03778 120 SSSFQRPVND-MN-IASGCPLFCPVSKX-EA-KNSYVRDDAIFIKAIVD 164 (164)
T ss_pred hHhcCCCCcc-cc-cCcCcceEEEhhHc-cc-cCCcccCCeEEEEEEEC
Confidence 8899999876 55 57999999999999 54 26999999999999884
No 2
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=100.00 E-value=1.5e-37 Score=216.36 Aligned_cols=121 Identities=32% Similarity=0.603 Sum_probs=105.9
Q ss_pred eEEecceEeCCCCeEEEEEEEECCCC---CCcEEEEEEEecCCCCCCCCCccceEEEEEEEeCCC-CCeeeEEeecCCCC
Q psy454 7 YFYSACFYSSCFGYRFCTRVNISRED---AQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTSS-EFSITDEIQSDKNF 82 (134)
Q Consensus 7 ~~~S~~F~~~~~Gy~w~l~vyp~g~~---~~~lsv~l~l~~g~~D~~l~Wp~~~~~~l~lldq~~-~~~~~~~~~~~~~~ 82 (134)
.++|++||++.+||+|+|++||||.+ ++||||||+|++|++|+.|+|||+++++|+||||.+ ..++..++.++++.
T Consensus 24 ~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~tfsLlDq~~~~~~~~~~~~~~~~~ 103 (148)
T cd03780 24 SIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIMETFKADPNS 103 (148)
T ss_pred EEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEEEEEECCCCCCCCcceeeecCCcc
Confidence 79999999999999999999999986 779999999999999999999999999999999983 44445666666666
Q ss_pred CccCCCcccccccccccccceeecccccCCCCCCCccCCeEEEEEEEE
Q psy454 83 DSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVT 130 (134)
Q Consensus 83 ~~f~~p~~~~~~~~~~G~~~fi~~~~L~~~~~~~yl~~d~l~i~~~v~ 130 (134)
..|+||..+ .| .+||+++||++++| ++.+.+||+||+|+|+|.|.
T Consensus 104 ~~F~rp~~~-~n-~~~G~~~Fi~~~~L-e~s~~~ylkdD~~~Ik~~v~ 148 (148)
T cd03780 104 SSFKRPDGE-MN-IASGCPRFVAHSVL-ENAKNTYIKDDTLFLKVAVD 148 (148)
T ss_pred ccccCCCCC-CC-CCcChhheeEHHHh-hcccCCcCcCCEEEEEEEEC
Confidence 789999766 44 57999999999999 76335999999999999884
No 3
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=100.00 E-value=3.3e-37 Score=214.22 Aligned_cols=122 Identities=30% Similarity=0.567 Sum_probs=105.7
Q ss_pred ceEEecceEeCCCCeEEEEEEEECCCC---CCcEEEEEEEecCCCCCCCCCccceEEEEEEEeCCCCCeeeEEeecCCCC
Q psy454 6 RYFYSACFYSSCFGYRFCTRVNISRED---AQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTSSEFSITDEIQSDKNF 82 (134)
Q Consensus 6 ~~~~S~~F~~~~~Gy~w~l~vyp~g~~---~~~lsv~l~l~~g~~D~~l~Wp~~~~~~l~lldq~~~~~~~~~~~~~~~~ 82 (134)
..++||+||++..||+|+|++||||.+ ++||||||+|++|++|+.|+|||+++++|+||||.++.+...++.++++.
T Consensus 23 ~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~tfsLlDq~~~~~~~~~~~~~~~~ 102 (147)
T cd03779 23 VSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVTFMLLDQNNREHVIDAFRPDLSS 102 (147)
T ss_pred ceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEEEEEECCCCCCCCcEeecCCccc
Confidence 479999999998999999999999987 77999999999999999999999999999999998666655566554444
Q ss_pred CccCCCcccccccccccccceeecccccCCCCCCCccCCeEEEEEEEE
Q psy454 83 DSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVT 130 (134)
Q Consensus 83 ~~f~~p~~~~~~~~~~G~~~fi~~~~L~~~~~~~yl~~d~l~i~~~v~ 130 (134)
..|+||..+ .+ .+||+++||++++| ++...+||+||+|+|+|+|.
T Consensus 103 ~~F~rP~~~-~n-~~~G~~~Fi~~~~L-e~s~~~ylkDD~~~Irc~V~ 147 (147)
T cd03779 103 ASFQRPVSD-MN-VASGCPLFFPLKKL-QSPKHAYCKDDTIYIKCVVD 147 (147)
T ss_pred ccccCcccC-CC-CCcchhheeEHHHh-cccCCCcEeCCEEEEEEEEC
Confidence 679999866 33 57999999999999 76223999999999999984
No 4
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=100.00 E-value=1.1e-35 Score=213.86 Aligned_cols=120 Identities=33% Similarity=0.637 Sum_probs=107.7
Q ss_pred eEEecceEeCCCCeEEEEEEEECCCC---CCcEEEEEEEecCCCCCCCCCccceEEEEEEEeCC-CCCeeeEEeecCCCC
Q psy454 7 YFYSACFYSSCFGYRFCTRVNISRED---AQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTS-SEFSITDEIQSDKNF 82 (134)
Q Consensus 7 ~~~S~~F~~~~~Gy~w~l~vyp~g~~---~~~lsv~l~l~~g~~D~~l~Wp~~~~~~l~lldq~-~~~~~~~~~~~~~~~ 82 (134)
.++||+|||+..||+|+|++||||.+ ++|||+||+|++|++|+.|+|||+++++|+|+||. .+.++.+++.|+|+.
T Consensus 62 ~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~~~~tfsLlDQ~~~~~~~~~~~~p~p~~ 141 (186)
T cd03777 62 SLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNS 141 (186)
T ss_pred EEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCceeEEEEEEEEcCCCccccccceeccCCcc
Confidence 79999999944499999999999986 77999999999999999999999999999999998 567788888887766
Q ss_pred CccCCCcccccccccccccceeecccccCCCCCCCccCCeEEEEEEEEe
Q psy454 83 DSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVTE 131 (134)
Q Consensus 83 ~~f~~p~~~~~~~~~~G~~~fi~~~~L~~~~~~~yl~~d~l~i~~~v~~ 131 (134)
..|+||..+ .| .+||+++||++++| ++ ++||+||+|+|+|.|..
T Consensus 142 ~~F~rp~~~-~n-~~~G~~~Fi~~~~L-e~--~~ylkdD~l~Irv~v~~ 185 (186)
T cd03777 142 SSFKKPTGE-MN-IASGCPVFVAQTVL-EN--GTYIKDDTIFIKVIVDT 185 (186)
T ss_pred ccccCCccC-CC-CCCCchheeEHHHh-cc--CCcEeCCEEEEEEEEec
Confidence 789988765 34 57999999999999 87 89999999999999874
No 5
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=100.00 E-value=1.2e-34 Score=204.94 Aligned_cols=122 Identities=26% Similarity=0.513 Sum_probs=105.8
Q ss_pred CceEEecceEeCCCCeEEEEEEEECCCC--CCcEEEEEEEecCCCCCCCCCcc-ceEEEEEEEeCC----CCCeeeEEee
Q psy454 5 NRYFYSACFYSSCFGYRFCTRVNISRED--AQYLSLFIHLVQGENDDILDWPF-VGRIRFTALNTS----SEFSITDEIQ 77 (134)
Q Consensus 5 ~~~~~S~~F~~~~~Gy~w~l~vyp~g~~--~~~lsv~l~l~~g~~D~~l~Wp~-~~~~~l~lldq~----~~~~~~~~~~ 77 (134)
++.++||+||+. |||+|+|++||||.+ ++||||||+|++|++|+.|+||+ .++++|+||||. .++++.++++
T Consensus 21 g~~i~S~~Fysv-gGy~w~I~~YPnG~~~~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~~LlDQ~~~~~~r~~~~~~~~ 99 (167)
T cd03771 21 GTKIYSPRFYSP-EGYAFQVGLYPNGTESYPGYTGLYFHLCSGENDDVLEWPCPNRQATMTLLDQDPDIQQRMSNQRSFT 99 (167)
T ss_pred CCEEECCCCCcc-CCeEEEEEEEeCCCCCCCCcceEEEEEecCCccccccCcceeEEEEEEEECCCCcccccCcceEEEe
Confidence 558999999774 999999999999986 78999999999999999999997 789999999997 3578889999
Q ss_pred cCCCCCc-------cCCCcc------c-----ccccccccccceeecccccCCCCCCCccCCeEEEEEEEE
Q psy454 78 SDKNFDS-------FKRPVN------F-----FLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVT 130 (134)
Q Consensus 78 ~~~~~~~-------f~~p~~------~-----~~~~~~~G~~~fi~~~~L~~~~~~~yl~~d~l~i~~~v~ 130 (134)
|+|+... |+||.. + +.++.+|||++||++++| ++ ++||+||+|+|+++++
T Consensus 100 ~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L-~~--r~ylk~dtl~i~~~~~ 167 (167)
T cd03771 100 TDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRL-RR--RDFLKGDDLIILLDFE 167 (167)
T ss_pred cCCcccccccccccccCCccccccccccccccccccCccccccceeHHHh-cc--CCCCcCCEEEEEEEeC
Confidence 9875444 999942 1 124568999999999999 77 7899999999999975
No 6
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=100.00 E-value=1.2e-34 Score=203.54 Aligned_cols=123 Identities=24% Similarity=0.471 Sum_probs=105.7
Q ss_pred cCceEEecceEeCCCCeEEEEEEEECCCC----CCcEEEEEEEecCCCCCCCCCcc-ceEEEEEEEeCC----CCCeeeE
Q psy454 4 INRYFYSACFYSSCFGYRFCTRVNISRED----AQYLSLFIHLVQGENDDILDWPF-VGRIRFTALNTS----SEFSITD 74 (134)
Q Consensus 4 ~~~~~~S~~F~~~~~Gy~w~l~vyp~g~~----~~~lsv~l~l~~g~~D~~l~Wp~-~~~~~l~lldq~----~~~~~~~ 74 (134)
.+..++||+||++ .||++++++||||.+ ++|+|||++|++|++|+.|+||| ..+++|.||||. .++|+++
T Consensus 20 ~~~~i~Sp~Fyt~-~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl~llDQ~~~~~~r~~~~~ 98 (167)
T cd03783 20 KGDVLQSPRFYSP-EGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAIITVLDQDPDVRLRMSSSR 98 (167)
T ss_pred CCCeEECCCCccC-CCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEEEEEcCCcchhhccccce
Confidence 4578999999995 799999999999875 67999999999999999999995 569999999997 3678888
Q ss_pred EeecCCC--CC------ccCCCcc--------cccccccccccceeecccccCCCCCCCccCCeEEEEEEEE
Q psy454 75 EIQSDKN--FD------SFKRPVN--------FFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVT 130 (134)
Q Consensus 75 ~~~~~~~--~~------~f~~p~~--------~~~~~~~~G~~~fi~~~~L~~~~~~~yl~~d~l~i~~~v~ 130 (134)
+++++++ .. .|+||.. .+.++.+|||+.||+|+.| ++ ++||+||+++|+++++
T Consensus 99 sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L-~~--r~yikdDtlfI~~~~~ 167 (167)
T cd03783 99 SFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQL-RR--RSFLKNDDLIIFVDFE 167 (167)
T ss_pred eeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHH-hh--CCcccCCeEEEEEecC
Confidence 8988762 22 3999953 1235679999999999999 77 8999999999999874
No 7
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=100.00 E-value=2.4e-34 Score=201.22 Aligned_cols=123 Identities=23% Similarity=0.421 Sum_probs=104.3
Q ss_pred cCceEEecceEeCCCCeEEEEEEEECCCC--CCcEEEEEEEecCCCCCCCCCccc-eEEEEEEEeCC----CCCeeeEEe
Q psy454 4 INRYFYSACFYSSCFGYRFCTRVNISRED--AQYLSLFIHLVQGENDDILDWPFV-GRIRFTALNTS----SEFSITDEI 76 (134)
Q Consensus 4 ~~~~~~S~~F~~~~~Gy~w~l~vyp~g~~--~~~lsv~l~l~~g~~D~~l~Wp~~-~~~~l~lldq~----~~~~~~~~~ 76 (134)
.+..++||+||++ .|||+++++||||.+ ++|||||++|++|++|+.|+|||. .+++|.||||. .++|+++++
T Consensus 20 ~~~~i~Sp~FYt~-~GYkl~l~~ylnG~g~~~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~~LlDQ~~d~~~r~~~~~~~ 98 (167)
T cd03782 20 PNGKIYSPPFLSS-TGYSFQVGLYLNGTDDYPGNLAIYLHLTSGPNDDQLQWPCPWQQATMMLLDQHPDIRQRMSNQRSV 98 (167)
T ss_pred CCceEECCCCcCc-cCceeEEEEEecCCCCCCCEEEEEEEEeccCCCccccCCCcCCeEEEEEEcCCCchhhccceeeeE
Confidence 4568999999997 999999999999987 779999999999999999999999 89999999997 367888855
Q ss_pred e--cCCCCC---cc--CCCc------cc-----ccccccccccceeecccccCCCCCCCccCCeEEEEEEEE
Q psy454 77 Q--SDKNFD---SF--KRPV------NF-----FLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVT 130 (134)
Q Consensus 77 ~--~~~~~~---~f--~~p~------~~-----~~~~~~~G~~~fi~~~~L~~~~~~~yl~~d~l~i~~~v~ 130 (134)
+ |+++.. .| +||. .+ +..+.+||++.||+|++| ++ +.||+||+++|-++++
T Consensus 99 t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L-~~--r~yikdD~ifi~~~~e 167 (167)
T cd03782 99 TTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRL-RS--RDFIKGDDVIFLLTME 167 (167)
T ss_pred EecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHH-hh--cCcccCCeEEEEEecC
Confidence 4 444333 34 9993 22 122578999999999999 77 8999999999999874
No 8
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=100.00 E-value=4.3e-34 Score=198.77 Aligned_cols=120 Identities=39% Similarity=0.715 Sum_probs=102.4
Q ss_pred eEEecceEeCCCCeEEEEEEEECCCC---CCcEEEEEEEecCCCCCCCCCccceEEEEEEEeCCC-CCeeeEEeecCCCC
Q psy454 7 YFYSACFYSSCFGYRFCTRVNISRED---AQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTSS-EFSITDEIQSDKNF 82 (134)
Q Consensus 7 ~~~S~~F~~~~~Gy~w~l~vyp~g~~---~~~lsv~l~l~~g~~D~~l~Wp~~~~~~l~lldq~~-~~~~~~~~~~~~~~ 82 (134)
.++||+|+++.|||+|+|++||||.. .+|||+||+|+++++|+.|+||++++++|+|+||.+ ..++..++.+.++.
T Consensus 24 ~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~~~lldq~~~~~~~~~~~~~~~~~ 103 (147)
T cd03776 24 VIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTITLTLLDQSEPRQNIHETMMSKPEL 103 (147)
T ss_pred eEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeEEEEECCCcccCccEEEEEcCCCh
Confidence 48999999877999999999999976 689999999999999999999999999999999984 44444445444445
Q ss_pred CccCCCcccccccccccccceeecccccCCCCCCCccCCeEEEEEEEE
Q psy454 83 DSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVT 130 (134)
Q Consensus 83 ~~f~~p~~~~~~~~~~G~~~fi~~~~L~~~~~~~yl~~d~l~i~~~v~ 130 (134)
..|++|..+ .+..+||+.+||++++| ++ .+||+||+|+|+|+|+
T Consensus 104 ~~F~~p~~~-~~~~~~G~~~fi~~~~L-e~--~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 104 LAFQRPTTD-RNPKGFGYVEFAHIEDL-LQ--RGFVKNDTLLIKIEVN 147 (147)
T ss_pred HhhcCCCcC-CCCCCeeEceeeEHHHh-hh--CCCccCCEEEEEEEEC
Confidence 678888654 34468999999999999 77 7899999999999984
No 9
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=100.00 E-value=1.8e-33 Score=197.19 Aligned_cols=123 Identities=28% Similarity=0.590 Sum_probs=103.0
Q ss_pred CceEEecceEeCCCCeEEEEEEEECCCC---CCcEEEEEEEecCCCCCCCCCccceEEEEEEEeCCCC-----CeeeEEe
Q psy454 5 NRYFYSACFYSSCFGYRFCTRVNISRED---AQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTSSE-----FSITDEI 76 (134)
Q Consensus 5 ~~~~~S~~F~~~~~Gy~w~l~vyp~g~~---~~~lsv~l~l~~g~~D~~l~Wp~~~~~~l~lldq~~~-----~~~~~~~ 76 (134)
++.+.|++|+++..||+|+|++||||.. ++|||+||+|++|++|+.|+||++++++|+||||.++ .++..++
T Consensus 22 ~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~~~llDq~~~~~~~~~~~~~~~ 101 (154)
T cd03781 22 NLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRITFTLLDQSDPSLSKPQHITETF 101 (154)
T ss_pred CceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEEEEEECCCCCccccCcceEEEE
Confidence 5789999999933399999999999976 6899999999999999999999999999999999743 2444556
Q ss_pred ecCCCCCccCCCcccc--cccccccccceeecccccCCCCCCCccCCeEEEEEEEE
Q psy454 77 QSDKNFDSFKRPVNFF--LNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVT 130 (134)
Q Consensus 77 ~~~~~~~~f~~p~~~~--~~~~~~G~~~fi~~~~L~~~~~~~yl~~d~l~i~~~v~ 130 (134)
.++++...|+||.... .++.+||+.+||++++| ++ .+||+||+|+|+|+|+
T Consensus 102 ~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~L-e~--~~yl~dD~l~Irc~v~ 154 (154)
T cd03781 102 TPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDL-KK--RNYIKDDAIFLRASVE 154 (154)
T ss_pred EcCCchhhhcCCcccccCCCCCccchhHeeEHHHH-hh--CCcccCCEEEEEEEeC
Confidence 6656667899886410 13457999999999999 77 7999999999999984
No 10
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=100.00 E-value=6e-32 Score=187.93 Aligned_cols=123 Identities=36% Similarity=0.708 Sum_probs=101.0
Q ss_pred cCceEEecceEeCCCCeEEEEEEEECCCC---CCcEEEEEEEecCCCCCCCCCccceEEEEEEEeCCC---CCeeeEEee
Q psy454 4 INRYFYSACFYSSCFGYRFCTRVNISRED---AQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTSS---EFSITDEIQ 77 (134)
Q Consensus 4 ~~~~~~S~~F~~~~~Gy~w~l~vyp~g~~---~~~lsv~l~l~~g~~D~~l~Wp~~~~~~l~lldq~~---~~~~~~~~~ 77 (134)
.++.++||.|+++..||+|+|++||+|.. ++|||+||+|+++++|+.++||++++++|+|+||.+ .+++..++.
T Consensus 21 ~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~~~l~d~~~~~~~~~~~~~~~ 100 (149)
T cd00270 21 SNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKITLTLLDQSDDSKRKHITETFM 100 (149)
T ss_pred CCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEEEEEECCCCccccCceEEEEE
Confidence 45799999999933399999999999975 679999999999999999999999999999999986 455555555
Q ss_pred cCCCCCccCCCcccccccccccccceeecccccCCCCCCCccCCeEEEEEEEE
Q psy454 78 SDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVT 130 (134)
Q Consensus 78 ~~~~~~~f~~p~~~~~~~~~~G~~~fi~~~~L~~~~~~~yl~~d~l~i~~~v~ 130 (134)
+.+....|++|... .+..+|||.+||++++| ++ .|||+||+|+|+|+|+
T Consensus 101 ~~~~~~~f~~~~~~-~~~~~~G~~~fi~~~~L-~~--~gfl~dD~l~I~~~v~ 149 (149)
T cd00270 101 PDPNSSAFQRPPTG-ENNIGFGYPEFVPLEKL-ES--RGYVKDDTLFIKVEVD 149 (149)
T ss_pred cCCchHhhcCCCcc-cCCCCcCcceEeEHHHh-cc--CCCEeCCEEEEEEEEC
Confidence 44444567654322 23468999999999999 76 6999999999999984
No 11
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.92 E-value=1.4e-24 Score=147.92 Aligned_cols=107 Identities=19% Similarity=0.260 Sum_probs=85.1
Q ss_pred ccCceEEecceEeCCCCeEEEEEEEECCCC---CCcEEEEEEEecCCCCCCCCCccceEEEEEEEeCC-CCCeeeEEeec
Q psy454 3 EINRYFYSACFYSSCFGYRFCTRVNISRED---AQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTS-SEFSITDEIQS 78 (134)
Q Consensus 3 ~~~~~~~S~~F~~~~~Gy~w~l~vyp~g~~---~~~lsv~l~l~~g~~D~~l~Wp~~~~~~l~lldq~-~~~~~~~~~~~ 78 (134)
+.++.++|++|.+ |||+|+|++||+|.. ++|||+||+++++. .|+..++++|+|+||. +..+.....
T Consensus 19 ~~~~~~~S~~F~v--gG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~~-----~~~~~~~~~l~llnq~~~~~~~~~~~-- 89 (132)
T cd03773 19 QSADPVYSDPLNV--DGLCWRLKVYPDGNGEVRGNFLSVFLELCSGL-----GEASKYEYRVEMVHQANPTKNIKREF-- 89 (132)
T ss_pred cCCcceeCCCeEe--CCccEEEEEECCCCCCCCCCEEEEEEEeecCC-----CCceeEEEEEEEEcCCCCccceEEec--
Confidence 3567899999999 899999999999975 67999999998652 3678889999999995 443322211
Q ss_pred CCCCCccCCCcccccccccccccceeecccccCCCCCCCccC--CeEEEEEEEEe
Q psy454 79 DKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMED--DTFVIKTQVTE 131 (134)
Q Consensus 79 ~~~~~~f~~p~~~~~~~~~~G~~~fi~~~~L~~~~~~~yl~~--d~l~i~~~v~~ 131 (134)
.+.|. +..+|||.+||++++| ++ .|||.| |+|+|+|.|..
T Consensus 90 ---~~~f~-------~~~~wG~~~Fi~~~~L-~~--~gfl~~~~D~l~i~~~v~p 131 (132)
T cd03773 90 ---ASDFE-------VGECWGYNRFFRLDLL-IN--EGYLLPENDTLILRFSVRP 131 (132)
T ss_pred ---ccccc-------CCCCcCHHHhccHHHH-hh--CCCcCCCCCEEEEEEEEeC
Confidence 12343 2357999999999999 76 799999 99999999964
No 12
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.92 E-value=4.1e-24 Score=147.12 Aligned_cols=112 Identities=26% Similarity=0.388 Sum_probs=87.7
Q ss_pred cCceEEecceEeCCCC---eEEEEEEEECCCC---CCcEEEEEEEecCCCCCCCCCccceEEEEEEEeCCCCCeeeEEee
Q psy454 4 INRYFYSACFYSSCFG---YRFCTRVNISRED---AQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTSSEFSITDEIQ 77 (134)
Q Consensus 4 ~~~~~~S~~F~~~~~G---y~w~l~vyp~g~~---~~~lsv~l~l~~g~~D~~l~Wp~~~~~~l~lldq~~~~~~~~~~~ 77 (134)
.++.++|++|.+ || |+|+|++||+|.. .+|||+||+|++.+ .|+++++++|+|+||.+..... .
T Consensus 21 ~~~~i~S~~F~v--gg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~~-----~~~v~a~f~~~l~n~~~~~~~~--~- 90 (139)
T cd03774 21 MGEVIKSSTFSS--GANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP-----KSEVRAKFKFSILNAKGEETKA--M- 90 (139)
T ss_pred CCCEEECCCeec--CCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccCC-----CCcEEEEEEEEEEecCCCeeee--e-
Confidence 467899999999 77 5999999999964 78999999997532 4689999999999998543211 1
Q ss_pred cCCCCCccCCCcccccccccccccceeecccccCCCCCCCccCCeEEEEEEEEecc
Q psy454 78 SDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVTEMT 133 (134)
Q Consensus 78 ~~~~~~~f~~p~~~~~~~~~~G~~~fi~~~~L~~~~~~~yl~~d~l~i~~~v~~~~ 133 (134)
.......|. +..+|||.+||++++| +++..|||.||+|+|+|+|+++.
T Consensus 91 ~~~~~~~f~-------~~~~wG~~~fi~~~~L-~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 91 ESQRAYRFV-------QGKDWGFKKFIRRDFL-LDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred cccCcEeCC-------CCCccCHHHeeeHHHh-hhhhcccccCCEEEEEEEEEEEc
Confidence 111123343 1257999999999999 65457999999999999999875
No 13
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.92 E-value=3.5e-24 Score=146.80 Aligned_cols=113 Identities=15% Similarity=0.286 Sum_probs=88.1
Q ss_pred cCceEEecceEeCCCCeEEEEEEEECCCC-CCcEEEEEEEecCCCC---CCCCCccceEEEEEEEeCCC-CCeeeEEeec
Q psy454 4 INRYFYSACFYSSCFGYRFCTRVNISRED-AQYLSLFIHLVQGEND---DILDWPFVGRIRFTALNTSS-EFSITDEIQS 78 (134)
Q Consensus 4 ~~~~~~S~~F~~~~~Gy~w~l~vyp~g~~-~~~lsv~l~l~~g~~D---~~l~Wp~~~~~~l~lldq~~-~~~~~~~~~~ 78 (134)
.++.++|++|.+ |||+|+|.+||+|.. .+|||+||.++..+.. ..-.|++.|+|+|+|+||.+ ..+....
T Consensus 13 ~~~~~~S~~F~v--GG~~W~l~~yP~G~~~~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~~~~~~~~~~--- 87 (134)
T cd03775 13 LEKKVHSPKFKC--GGFEWRILLFPQGNSQTGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPGDPSIQLSNV--- 87 (134)
T ss_pred CCcceeCCCEEE--CCeeEEEEEeCCCCCCCCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCCCCccceEcc---
Confidence 356899999999 999999999999987 7999999999864432 13488999999999999974 3332211
Q ss_pred CCCCCccCCCcccccccccccccceeecccccCCC----CCCCccCCeEEEEEEEE
Q psy454 79 DKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPG----RGFLMEDDTFVIKTQVT 130 (134)
Q Consensus 79 ~~~~~~f~~p~~~~~~~~~~G~~~fi~~~~L~~~~----~~~yl~~d~l~i~~~v~ 130 (134)
..+.|.. ...+||+.+||++++| +++ ..|||+||+|+|++.|.
T Consensus 88 --~~~~F~~------~~~~wG~~~fi~~~~L-~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 88 --AHHRFNA------EDKDWGFTRFIELRKL-AHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred --ceeEeCC------CCCCCChhHcccHHHH-cccccCCCCceeECCEEEEEEEEC
Confidence 1244542 2358999999999999 632 47999999999999873
No 14
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.90 E-value=7.1e-23 Score=140.70 Aligned_cols=111 Identities=18% Similarity=0.269 Sum_probs=87.3
Q ss_pred CceEEecceEeCCCCeEEEEEEEECCCC-----CCcEEEEEEEecCCCCCCCCCccceEEEEEEEeCCC-CCeeeEEeec
Q psy454 5 NRYFYSACFYSSCFGYRFCTRVNISRED-----AQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTSS-EFSITDEIQS 78 (134)
Q Consensus 5 ~~~~~S~~F~~~~~Gy~w~l~vyp~g~~-----~~~lsv~l~l~~g~~D~~l~Wp~~~~~~l~lldq~~-~~~~~~~~~~ 78 (134)
++.++|+.|.+ |||.|+|++||+|.. .++|||||.+.+.. + ...|++.++++|.|+||.. ..+......
T Consensus 16 ~e~~~S~~f~v--gG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~-~-~~~w~i~a~~~~~l~~~~~~~~~~~~~~~- 90 (137)
T cd03772 16 SESVLSPPCFV--RNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAES-D-STSWSCHAQAVLRIINYKDDEPSFSRRIS- 90 (137)
T ss_pred CCcEECCCEEE--CCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcC-C-CCCCeEEEEEEEEEEcCCCCcccEEEeee-
Confidence 56799999999 999999999999943 48999999997533 2 2389999999999999983 333332211
Q ss_pred CCCCCccCCCcccccccccccccceeecccccCCCCCCCccCCeEEEEEEEEe
Q psy454 79 DKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVTE 131 (134)
Q Consensus 79 ~~~~~~f~~p~~~~~~~~~~G~~~fi~~~~L~~~~~~~yl~~d~l~i~~~v~~ 131 (134)
+.|.+ +...||+++||++++| +++..|||.||+++|+|.|+.
T Consensus 91 ----~~f~~------~~~~~G~~~fi~~~~L-~~~~sgyl~~D~l~Ie~~V~~ 132 (137)
T cd03772 91 ----HLFFS------KENDWGFSNFMTWSEV-TDPEKGFIEDDTITLEVYVQA 132 (137)
T ss_pred ----eEEcC------CCCCccchheeEHHHh-cCCCCCcEECCEEEEEEEEEe
Confidence 23422 2357999999999999 655589999999999999975
No 15
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.86 E-value=1.3e-20 Score=125.20 Aligned_cols=111 Identities=24% Similarity=0.495 Sum_probs=88.6
Q ss_pred cCceEEecceEeCCCCeEEEEEEEECCCC--CCcEEEEEEEecCCCCCCCCCccceEEEEEEEeCCCCCeeeEEeecCCC
Q psy454 4 INRYFYSACFYSSCFGYRFCTRVNISRED--AQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTSSEFSITDEIQSDKN 81 (134)
Q Consensus 4 ~~~~~~S~~F~~~~~Gy~w~l~vyp~g~~--~~~lsv~l~l~~g~~D~~l~Wp~~~~~~l~lldq~~~~~~~~~~~~~~~ 81 (134)
.++.++||.|.. +|+.|+|++||+|.. .+|+||||++..+..+ ...|++.++++|.|+||.+.++......
T Consensus 14 ~~~~~~S~~f~~--~g~~W~l~~~p~~~~~~~~~lsv~L~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~---- 86 (126)
T cd00121 14 EGESIYSPPFEV--GGYKWRIRIYPNGDGESGDYLSLYLELDKGESD-LEKWSVRAEFTLKLVNQNGGKSLSKSFT---- 86 (126)
T ss_pred CCcEEECCCEEE--cCEeEEEEEEcCCCCCCCCEEEEEEEecCCCCC-CCCCcEEEEEEEEEECCCCCccceEecc----
Confidence 577899999999 899999999999875 5699999999877654 5789999999999999985555443321
Q ss_pred CCccCCCcccccccccccccceeecccccCCCCCCCccCCeEEEEEEEE
Q psy454 82 FDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVT 130 (134)
Q Consensus 82 ~~~f~~p~~~~~~~~~~G~~~fi~~~~L~~~~~~~yl~~d~l~i~~~v~ 130 (134)
..+. . ....+||+.+||++++| ++ ..++.||+|+|+|+|.
T Consensus 87 -~~~~---~--~~~~~~G~~~fi~~~~l-~~--~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 87 -HVFF---S--EKGSGWGFPKFISWDDL-ED--SYYLVDDSLTIEVEVK 126 (126)
T ss_pred -CCcC---C--CCCCCCChHHeeEHHHh-cc--CCcEECCEEEEEEEEC
Confidence 1221 0 12368999999999999 65 4459999999999984
No 16
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.83 E-value=4.5e-20 Score=122.46 Aligned_cols=106 Identities=29% Similarity=0.542 Sum_probs=84.0
Q ss_pred EEecceEeCCCCeEEEEEEEECCCCCCcEEEEEEEecCCCCCCCCCccceEEEEEEEeCCCCCeeeEEeecCCCCCccCC
Q psy454 8 FYSACFYSSCFGYRFCTRVNISREDAQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTSSEFSITDEIQSDKNFDSFKR 87 (134)
Q Consensus 8 ~~S~~F~~~~~Gy~w~l~vyp~g~~~~~lsv~l~l~~g~~D~~l~Wp~~~~~~l~lldq~~~~~~~~~~~~~~~~~~f~~ 87 (134)
+.|+.|.. +||.|+|++||+|. ++++++||++..++.+...+|++.+++++.|+++.+... ..... .+.|.
T Consensus 14 ~~s~~~~~--~g~~W~l~~~~~~~-~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~----~~~F~- 84 (119)
T PF00917_consen 14 SSSFVFSH--GGYPWRLKVYPKGN-GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSI-SKRIK----SHSFN- 84 (119)
T ss_dssp EEEEESST--TSEEEEEEEETTES-TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEE-EEEEE----CEEEC-
T ss_pred ECCCeEEE--CCEEEEEEEEeCCC-cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCcc-eeeee----eeEEe-
Confidence 33466655 99999999999987 689999999999988777899999999999999986542 21111 13343
Q ss_pred CcccccccccccccceeecccccCCCCCCCccCCeEEEEEEEEe
Q psy454 88 PVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVTE 131 (134)
Q Consensus 88 p~~~~~~~~~~G~~~fi~~~~L~~~~~~~yl~~d~l~i~~~v~~ 131 (134)
+..+||+.+||+.++| ++ ..||.||+++|+|+|+.
T Consensus 85 ------~~~~~g~~~fi~~~~l-~~--~~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 85 ------NPSSWGWSSFISWEDL-ED--PYFLVDDSLTIEVEVKI 119 (119)
T ss_dssp ------TTSEEEEEEEEEHHHH-TT--CTTSBTTEEEEEEEEEE
T ss_pred ------eecccchhheeEHHHh-Cc--cCCeECCEEEEEEEEEC
Confidence 2358999999999999 65 34899999999999974
No 17
>smart00061 MATH meprin and TRAF homology.
Probab=99.64 E-value=1.9e-15 Score=96.28 Aligned_cols=82 Identities=17% Similarity=0.406 Sum_probs=64.5
Q ss_pred cCceEEecceEeCCCCeEEEEEEEECCCCCCcEEEEEEEecCCCCCCCCCccceEEEEEEEeCCCCCeeeEEeecCCCCC
Q psy454 4 INRYFYSACFYSSCFGYRFCTRVNISREDAQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTSSEFSITDEIQSDKNFD 83 (134)
Q Consensus 4 ~~~~~~S~~F~~~~~Gy~w~l~vyp~g~~~~~lsv~l~l~~g~~D~~l~Wp~~~~~~l~lldq~~~~~~~~~~~~~~~~~ 83 (134)
.++.++|++|.+ +||+|+|.+||+ .+|||+||.+.+.+.+. ..|++.++++|.|+||.+..+ ... ...
T Consensus 14 ~~~~~~S~~f~~--~g~~W~i~~~p~---~~~lsl~L~~~~~~~~~-~~w~v~a~~~~~l~~~~~~~~-~~~-----~~~ 81 (95)
T smart00061 14 EGESYFSPSEEH--FNIPWRLKIYRK---NGFLSLYLHCEKEECDS-RKWSIEAEFTLKLVSQNGKSL-SKK-----DKH 81 (95)
T ss_pred cCceEeCChhEE--cCceeEEEEEEc---CCEEEEEEEeCCCcCCC-CCeEEEEEEEEEEEeCCCCEE-eee-----eeE
Confidence 467899999999 999999999999 57999999998776543 489999999999999986433 111 124
Q ss_pred ccCCCccccccccccccccee
Q psy454 84 SFKRPVNFFLNKKAFGFNNFI 104 (134)
Q Consensus 84 ~f~~p~~~~~~~~~~G~~~fi 104 (134)
.|.+ ..+||+.+||
T Consensus 82 ~F~~-------~~~~G~~~fi 95 (95)
T smart00061 82 VFEK-------PSGWGFSKFI 95 (95)
T ss_pred EEcC-------CCccceeeEC
Confidence 4542 2579999986
No 18
>KOG0297|consensus
Probab=99.49 E-value=1.1e-14 Score=115.53 Aligned_cols=83 Identities=33% Similarity=0.730 Sum_probs=74.8
Q ss_pred CceEEecceEeCCCCeEEEEEEEECCCC---CCcEEEEEEEecCCCCCCCCCccceEEEEEEEeCCCCCeeeEEeecCCC
Q psy454 5 NRYFYSACFYSSCFGYRFCTRVNISRED---AQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTSSEFSITDEIQSDKN 81 (134)
Q Consensus 5 ~~~~~S~~F~~~~~Gy~w~l~vyp~g~~---~~~lsv~l~l~~g~~D~~l~Wp~~~~~~l~lldq~~~~~~~~~~~~~~~ 81 (134)
...++|++||++..||+++.++|.||++ +.++|+|+++++|++|..|.|||+.++++.++|| +...++.++++
T Consensus 301 ~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~~~v~~~l~dq----~~~~~~~~~~~ 376 (391)
T KOG0297|consen 301 TLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFRQKVTLMLLDQ----HVIDAFKPDLN 376 (391)
T ss_pred CccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCCCceEEEEecc----cccccccccch
Confidence 4578999999999999999999999987 7899999999999999999999999999999999 66666777777
Q ss_pred CCccCCCccc
Q psy454 82 FDSFKRPVNF 91 (134)
Q Consensus 82 ~~~f~~p~~~ 91 (134)
...|.||.++
T Consensus 377 ~~~f~r~~~~ 386 (391)
T KOG0297|consen 377 SSSFQRPVGE 386 (391)
T ss_pred hhhcCCCCCc
Confidence 7789888755
No 19
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=6.7e-10 Score=92.86 Aligned_cols=116 Identities=18% Similarity=0.264 Sum_probs=84.5
Q ss_pred CceEEecceEeCCCCeEEEEEEEECCCCCCcEEEEEEEecCCCCCCC--CCccceEEEEEEEeCCCCCeeeEEeecCCCC
Q psy454 5 NRYFYSACFYSSCFGYRFCTRVNISREDAQYLSLFIHLVQGENDDIL--DWPFVGRIRFTALNTSSEFSITDEIQSDKNF 82 (134)
Q Consensus 5 ~~~~~S~~F~~~~~Gy~w~l~vyp~g~~~~~lsv~l~l~~g~~D~~l--~Wp~~~~~~l~lldq~~~~~~~~~~~~~~~~ 82 (134)
.+...||+|.+ ||+.|.|.++|.|+...-+||||+....+.+..- .|-|.++|-|.|=++... .+. .++ ...
T Consensus 52 ~~k~~Sp~F~v--g~~twki~lfPqG~nq~~~sVyLe~~pqe~e~~~gk~~~ccaqFaf~Is~p~~p-ti~-~iN--~sH 125 (1089)
T COG5077 52 AKKVESPPFSV--GGHTWKIILFPQGNNQCNVSVYLEYEPQELEETGGKYYDCCAQFAFDISNPKYP-TIE-YIN--KSH 125 (1089)
T ss_pred hhhccCCcccc--cCeeEEEEEecccCCccccEEEEEeccchhhhhcCcchhhhhheeeecCCCCCC-chh-hhh--ccc
Confidence 45689999999 9999999999999883339999988865433221 388999999999887641 111 011 112
Q ss_pred CccCCCcccccccccccccceeecccccCCCCC---CCccCCeEEEEEEEEecc
Q psy454 83 DSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRG---FLMEDDTFVIKTQVTEMT 133 (134)
Q Consensus 83 ~~f~~p~~~~~~~~~~G~~~fi~~~~L~~~~~~---~yl~~d~l~i~~~v~~~~ 133 (134)
+.|. +-..+||+++||.+..|. .|+. .|+.++.+.|++.|.++.
T Consensus 126 hrFs------~~~tDwGFt~f~dL~kl~-~psp~~Ppfleeg~l~ItvyVRvlk 172 (1089)
T COG5077 126 HRFS------MESTDWGFTNFIDLNKLI-EPSPGRPPFLEEGTLVITVYVRVLK 172 (1089)
T ss_pred cccc------ccccccchhhhhhhhhhc-CCCCCCCCcccCCeEEEEEEEEEEe
Confidence 3443 234789999999999884 3333 579999999999998875
No 20
>KOG1987|consensus
Probab=98.01 E-value=7e-05 Score=57.13 Aligned_cols=107 Identities=21% Similarity=0.280 Sum_probs=77.3
Q ss_pred eEEecceEeCCCCeEEEEEEEECCCCCCcEEEEEEEecCCCCCCCCCccceEEEEEEEeCCCCCe-eeEEeecCCCCCcc
Q psy454 7 YFYSACFYSSCFGYRFCTRVNISREDAQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTSSEFS-ITDEIQSDKNFDSF 85 (134)
Q Consensus 7 ~~~S~~F~~~~~Gy~w~l~vyp~g~~~~~lsv~l~l~~g~~D~~l~Wp~~~~~~l~lldq~~~~~-~~~~~~~~~~~~~f 85 (134)
.++|..|.. +|-.|++.+||+|+ +++.|+.+...+ .|-+.+.+.|.+.||..... ...... ...|
T Consensus 19 ~~ys~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~l~v~n~~~~~~~~~~~~~----~~~~ 84 (297)
T KOG1987|consen 19 VIYSNGFVK--GGCKWRLSAYPKGN---YLSLTLSVSDSP-----GWERYAKLRLTVVNQKSEKYLSTVEEG----FSWF 84 (297)
T ss_pred hccccceee--cCceEEEEEecCCC---EEEEEEEeccCC-----CcceeEEEEEEEccCCCcceeeeeeee----EEec
Confidence 578888988 99999999999975 788888887544 78899999999999986533 111000 0112
Q ss_pred CCCcccccccccccccceeecccccCCCCCCCccCCeEEEEEEEEec
Q psy454 86 KRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVTEM 132 (134)
Q Consensus 86 ~~p~~~~~~~~~~G~~~fi~~~~L~~~~~~~yl~~d~l~i~~~v~~~ 132 (134)
... .-...||+...++...+ .+...||+.++.+++-..+.++
T Consensus 85 ~~~----~~~~~~g~~~~~~~~~~-~~~~~g~~~~~~~~~~a~~~V~ 126 (297)
T KOG1987|consen 85 RFN----KVLKEWGFGKMLPLTLL-IDCSNGFLVAHKLVLVARSEVF 126 (297)
T ss_pred ccc----ccccccCcccccChHHh-hcccCcEEEcCceEEEeeecce
Confidence 111 01357999999999988 6666799999877776665443
No 21
>KOG1863|consensus
Probab=97.26 E-value=0.00034 Score=62.37 Aligned_cols=110 Identities=11% Similarity=0.105 Sum_probs=82.7
Q ss_pred eEEecceEeCCCCeEEEEEEEECCCCCCcEEEEEEEecCCCCCCCCCccceEEEEEEEeCCCC-CeeeEEeecCCCCCcc
Q psy454 7 YFYSACFYSSCFGYRFCTRVNISREDAQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTSSE-FSITDEIQSDKNFDSF 85 (134)
Q Consensus 7 ~~~S~~F~~~~~Gy~w~l~vyp~g~~~~~lsv~l~l~~g~~D~~l~Wp~~~~~~l~lldq~~~-~~~~~~~~~~~~~~~f 85 (134)
...||.|.. |+.+|++.+.|+++....+++|+..+....+ -.|-+.+++.+.++|..+. .+... +..+.|
T Consensus 42 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~v~~~~~~~~~~~~-----~~~h~~ 112 (1093)
T KOG1863|consen 42 RALSSNFGA--GATKWKILIAPKVNSLQSTRKKLEVMPSQSL--KSWSCGAQAVLRVKNTIDNLPDPEK-----AIHHVF 112 (1093)
T ss_pred HhcCccccc--cccceeeeeccccCcccceeEEeeeccCCCC--cceEecchhhhccccCCCCchhhhh-----hhhhcc
Confidence 456888877 9999999999998875669999998866544 4599999999999993332 11111 112344
Q ss_pred CCCcccccccccccccceeecccccCCCCCCCccCCeEEEEEEEEec
Q psy454 86 KRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVTEM 132 (134)
Q Consensus 86 ~~p~~~~~~~~~~G~~~fi~~~~L~~~~~~~yl~~d~l~i~~~v~~~ 132 (134)
. .....||+.+|+..+++ ..+..||+.+|++.+++.|.+.
T Consensus 113 ~------~~~~dwg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~v~ 152 (1093)
T KOG1863|consen 113 T------ADERDWGFSCFSTSSDI-RKPEDGYVRNGLEKLEKRVRVE 152 (1093)
T ss_pred c------ccccchhhccchhHhhc-cCcccccccccceeeeeeeeee
Confidence 3 12358999999999999 5666899999999999888764
No 22
>smart00137 MAM Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others). Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.
Probab=41.49 E-value=1.1e+02 Score=20.92 Aligned_cols=37 Identities=8% Similarity=0.051 Sum_probs=24.7
Q ss_pred ceEEecceEeCCCCeEEEEEEEECCCCCCcEEEEEEE
Q psy454 6 RYFYSACFYSSCFGYRFCTRVNISREDAQYLSLFIHL 42 (134)
Q Consensus 6 ~~~~S~~F~~~~~Gy~w~l~vyp~g~~~~~lsv~l~l 42 (134)
..+.||.|....+.+.++..+|-.|...+-|.||+.-
T Consensus 63 A~L~SP~~~~~~~~~cl~F~Y~m~G~~~g~L~V~~~~ 99 (161)
T smart00137 63 ARLLSPPLYENRSTHCLTFWYYMYGSGSGTLNVYVRE 99 (161)
T ss_pred EEEECCcccCCCCCeEEEEEEEecCCCCCEEEEEEEe
Confidence 3577888877545666666666666554458888763
No 23
>KOG3325|consensus
Probab=35.25 E-value=38 Score=23.99 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=23.8
Q ss_pred EEEEEEEecCCCCCCCCCccce-----EEEEEEEeC
Q psy454 36 LSLFIHLVQGENDDILDWPFVG-----RIRFTALNT 66 (134)
Q Consensus 36 lsv~l~l~~g~~D~~l~Wp~~~-----~~~l~lldq 66 (134)
++=-+++.+|++|..+..|-.. +|++.+.+-
T Consensus 52 l~~dvhiVrGeFD~~~~yP~~kvvtvGqfkIG~chG 87 (183)
T KOG3325|consen 52 LSSDVHIVRGEFDENLKYPENKVVTVGQFKIGLCHG 87 (183)
T ss_pred hCCCcEEEecccCccccCCccceEEeccEEEEeecC
Confidence 5556899999999999999864 566665553
No 24
>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.
Probab=34.25 E-value=1.2e+02 Score=20.21 Aligned_cols=37 Identities=5% Similarity=-0.014 Sum_probs=21.7
Q ss_pred eEEecceEeCCCCeEEEEEEEECCCCCCcEEEEEEEe
Q psy454 7 YFYSACFYSSCFGYRFCTRVNISREDAQYLSLFIHLV 43 (134)
Q Consensus 7 ~~~S~~F~~~~~Gy~w~l~vyp~g~~~~~lsv~l~l~ 43 (134)
.+.||.|....+-..++..+|-.|...+.|.|++.-.
T Consensus 60 ~L~SP~~~~~~~~~Cl~F~y~~~g~~~g~L~V~v~~~ 96 (157)
T cd06263 60 RLLSPLLPPPRSSHCLSFWYHMYGSGVGTLNVYVREE 96 (157)
T ss_pred EEEcccCcCCCCCeEEEEEEEecCCCCCeEEEEEEeC
Confidence 5667777764234455555555555445677766543
No 25
>PF06565 DUF1126: Repeat of unknown function (DUF1126); InterPro: IPR010554 This group contains several eukaryote specific repeats of around 35 residues in length. The function of this family is unknown.; PDB: 2Z14_A 2Z13_A.
Probab=30.38 E-value=38 Score=17.26 Aligned_cols=10 Identities=40% Similarity=0.514 Sum_probs=8.2
Q ss_pred CccCCeEEEE
Q psy454 117 LMEDDTFVIK 126 (134)
Q Consensus 117 yl~~d~l~i~ 126 (134)
||.||++.|.
T Consensus 5 ~L~DdTi~I~ 14 (33)
T PF06565_consen 5 YLADDTISIF 14 (33)
T ss_dssp ETTTTEEEEE
T ss_pred EccCCCEEEE
Confidence 7889998874
No 26
>PF00629 MAM: MAM domain; InterPro: IPR000998 MAM is an acronym derived from meprin, A-5 protein, and receptor protein-tyrosine phosphatase mu. The MAM domain consists of approximately 170 amino acids. It occurs in several cell surface proteins, including Meprins, and is thought to function as an interaction or adhesion domain []. The domain has been shown to play a role in homodimerization of protein-tyrosine phosphatase mu [] and appears to help determine the specificity of these interactions. It has been reported that certain cysteine mutations in the MAM domain of murine meprin A result in the formation of monomeric meprin, which has altered stability and activity []. This indicates that these domain-domain interactions are critical for structure and function of the enzyme. It has also been shown that the MAM domain of meprins is necessary for correct folding and transport through the secretory pathway []. ; GO: 0016020 membrane; PDB: 2C9A_A 2V5Y_A.
Probab=25.75 E-value=1.5e+02 Score=19.39 Aligned_cols=36 Identities=8% Similarity=0.013 Sum_probs=18.9
Q ss_pred eEEecceEeCCCCeEEEEEEEECCCCCCcEEEEEEEe
Q psy454 7 YFYSACFYSSCFGYRFCTRVNISREDAQYLSLFIHLV 43 (134)
Q Consensus 7 ~~~S~~F~~~~~Gy~w~l~vyp~g~~~~~lsv~l~l~ 43 (134)
.+.||.|.. .+.+.+.+.++-.|...+.|.|++.-.
T Consensus 62 ~L~Sp~~~~-~~~~cl~F~y~~~g~~~~~L~V~v~~~ 97 (160)
T PF00629_consen 62 RLISPVFPA-SGNSCLSFWYYMYGSSVGTLRVYVREE 97 (160)
T ss_dssp EEEEEEE---SS--EEEEEEEEE-SSSEEEEEEEEET
T ss_pred eeccccccc-cccceeEEEEeeccccceeeEEEEEec
Confidence 567888833 356666666666665434466655544
No 27
>PF08922 DUF1905: Domain of unknown function (DUF1905); InterPro: IPR015018 This family consist of hypothetical bacterial proteins. ; PDB: 2D9R_A.
Probab=22.94 E-value=1.6e+02 Score=17.93 Aligned_cols=15 Identities=13% Similarity=-0.082 Sum_probs=13.1
Q ss_pred CCCeEEEEEEEECCC
Q psy454 17 CFGYRFCTRVNISRE 31 (134)
Q Consensus 17 ~~Gy~w~l~vyp~g~ 31 (134)
.+|+.|+-.+.|.|.
T Consensus 39 I~g~~~~~sl~p~g~ 53 (80)
T PF08922_consen 39 IDGHPWRTSLFPMGN 53 (80)
T ss_dssp ETTEEEEEEEEESST
T ss_pred ECCEEEEEEEEECCC
Confidence 489999999999765
No 28
>COG5033 TFG3 Transcription initiation factor IIF, auxiliary subunit [Transcription]
Probab=22.31 E-value=93 Score=23.15 Aligned_cols=40 Identities=10% Similarity=0.201 Sum_probs=28.0
Q ss_pred CceEEecceEeC---CCCeEEEEEEEECCCCCC-cEEEEEEEec
Q psy454 5 NRYFYSACFYSS---CFGYRFCTRVNISREDAQ-YLSLFIHLVQ 44 (134)
Q Consensus 5 ~~~~~S~~F~~~---~~Gy~w~l~vyp~g~~~~-~lsv~l~l~~ 44 (134)
.+.+.||+|.+. =|++.+.|++|.-+..+. -+--|+++..
T Consensus 69 ~Rti~~pPFeI~EtGWGEF~i~I~iff~~~age~~~~fyl~f~~ 112 (225)
T COG5033 69 TRTIESPPFEIKETGWGEFDIQIKIFFAEKAGEKTIHFYLHFGD 112 (225)
T ss_pred cccccCCCcEEEecccccceEEEEEEEecCCCceEeehhhhccc
Confidence 356789999875 678999999998876533 3444455543
Done!