Query psy454
Match_columns 134
No_of_seqs 119 out of 810
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 19:44:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy454.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/454hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lb6_A TNF receptor-associated 100.0 4.6E-35 1.6E-39 204.8 14.7 123 7-133 28-157 (160)
2 4ghu_A TNF receptor-associated 100.0 2.7E-35 9.3E-40 213.0 11.0 124 5-133 61-188 (198)
3 2gkw_A TNF receptor-associated 100.0 3.7E-34 1.3E-38 206.0 11.1 120 7-131 63-186 (192)
4 4gjh_A TNF receptor-associated 100.0 7.5E-34 2.6E-38 202.2 12.3 121 6-131 46-172 (178)
5 1flk_A TNF receptor associated 100.0 8.8E-34 3E-38 208.9 11.1 122 6-132 98-223 (228)
6 1d00_A Tumor necrosis factor r 100.0 5.9E-33 2E-37 195.3 12.8 122 7-132 42-166 (168)
7 1ca9_A TRAF2, protein (TNF rec 100.0 6.2E-33 2.1E-37 199.4 11.8 122 7-132 66-190 (192)
8 4gwm_A Meprin A subunit beta; 100.0 2E-28 7E-33 200.2 12.7 125 4-134 422-568 (592)
9 3ivv_A Speckle-type POZ protei 99.9 2E-27 6.7E-32 163.5 10.5 112 4-133 27-144 (145)
10 2foj_A Ubiquitin carboxyl-term 99.9 3.7E-25 1.3E-29 153.6 12.0 111 6-132 33-148 (155)
11 3hqi_A Speckle-type POZ protei 99.9 1.6E-22 5.5E-27 153.8 10.2 111 4-132 23-139 (312)
12 2f1z_A Ubiquitin carboxyl-term 99.8 3.6E-20 1.2E-24 149.8 9.1 110 7-132 46-160 (522)
13 1jya_A YOPE regulator; specifi 24.6 83 0.0029 20.5 3.5 34 4-45 22-55 (130)
No 1
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=100.00 E-value=4.6e-35 Score=204.84 Aligned_cols=123 Identities=32% Similarity=0.625 Sum_probs=104.9
Q ss_pred eEEecceEeCCCCeEEEEEEEECCCC----CCcEEEEEEEecCCCCCCCCCccceEEEEEEEeCCCC---CeeeEEeecC
Q psy454 7 YFYSACFYSSCFGYRFCTRVNISRED----AQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTSSE---FSITDEIQSD 79 (134)
Q Consensus 7 ~~~S~~F~~~~~Gy~w~l~vyp~g~~----~~~lsv~l~l~~g~~D~~l~Wp~~~~~~l~lldq~~~---~~~~~~~~~~ 79 (134)
.++||+|+++..||+|+|++||||.+ ++|||+||+|++|++|+.|+||++++++|+|+||.+. +++.+++.++
T Consensus 28 ~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a~~~l~lldq~~~~~~~~~~~~~~~~ 107 (160)
T 1lb6_A 28 VIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAK 107 (160)
T ss_dssp EEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCSEEEEEECCCSCTTSCCCEEEEEECC
T ss_pred EEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCceeeeEEEEEEcCCCccccccceEEeecC
Confidence 89999999933399999999999964 5799999999999999999999999999999999843 3556667667
Q ss_pred CCCCccCCCcccccccccccccceeecccccCCCCCCCccCCeEEEEEEEEecc
Q psy454 80 KNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVTEMT 133 (134)
Q Consensus 80 ~~~~~f~~p~~~~~~~~~~G~~~fi~~~~L~~~~~~~yl~~d~l~i~~~v~~~~ 133 (134)
++...|.+|... .+..+|||++||++++| ++ +|||+||+|+|+|+|+++.
T Consensus 108 ~~~~~f~~p~~~-~~~~~~G~~~Fi~~~~L-~~--~~yl~dD~l~I~~~V~v~~ 157 (160)
T 1lb6_A 108 PELLAFQRPTIP-RNPKGFGYVTFMHLEAL-RQ--RTFIKDDTLLVRCEVSTRF 157 (160)
T ss_dssp TTSGGGSCCSSS-BCSEEEEEEEEEEGGGG-GT--SCCCBTTBEEEEEEEEC--
T ss_pred CcchhccCCccc-CCCCCcCEeeEeEHHHh-hh--CCCccCCEEEEEEEEEEee
Confidence 777789988754 34458999999999999 76 8999999999999999863
No 2
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=100.00 E-value=2.7e-35 Score=212.95 Aligned_cols=124 Identities=31% Similarity=0.587 Sum_probs=108.9
Q ss_pred CceEEecceEeCCCCeEEEEEEEECCCC---CCcEEEEEEEecCCCCCCCCCccceEEEEEEEeCC-CCCeeeEEeecCC
Q psy454 5 NRYFYSACFYSSCFGYRFCTRVNISRED---AQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTS-SEFSITDEIQSDK 80 (134)
Q Consensus 5 ~~~~~S~~F~~~~~Gy~w~l~vyp~g~~---~~~lsv~l~l~~g~~D~~l~Wp~~~~~~l~lldq~-~~~~~~~~~~~~~ 80 (134)
++.++||+|+++..||+|+|++||||.+ ++|||+||+|++|++|+.++||++++++|+|+||. ++.++.+++.+++
T Consensus 61 g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~a~~~l~Lldq~~~~~~~~~~~~~~~ 140 (198)
T 4ghu_A 61 TLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDP 140 (198)
T ss_dssp SCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCCEEEEECCCSTTCCCEEEEECCCT
T ss_pred CcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCCccCCCCCceEEEEEEEEEEcCCCCccceEEEeecCc
Confidence 4689999999922299999999999986 68999999999999999999999999999999999 4677888887776
Q ss_pred CCCccCCCcccccccccccccceeecccccCCCCCCCccCCeEEEEEEEEecc
Q psy454 81 NFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVTEMT 133 (134)
Q Consensus 81 ~~~~f~~p~~~~~~~~~~G~~~fi~~~~L~~~~~~~yl~~d~l~i~~~v~~~~ 133 (134)
....|++|... ...+|||++||++++| ++ +|||+||+|+|+|+|+++.
T Consensus 141 ~~~~f~rp~~~--~~~~wG~~~Fi~~~~L-~~--~gyL~dD~l~I~~~V~v~~ 188 (198)
T 4ghu_A 141 NSSSFKKPTGE--MNIASGCPVFVAQTVL-EN--GTYIKDDTIFIKVIVDTSD 188 (198)
T ss_dssp TSGGGSCCSSS--BCCCEEEEEEEEHHHH-HH--TTSCBTTBEEEEEEECCTT
T ss_pred ccceecCCccc--CcCCcCchhEeEHHHh-hh--cCCeeCCEEEEEEEEEecc
Confidence 66788888654 3368999999999999 76 8999999999999999874
No 3
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=100.00 E-value=3.7e-34 Score=206.03 Aligned_cols=120 Identities=33% Similarity=0.628 Sum_probs=104.6
Q ss_pred eEEecceEeCCCCeEEEEEEEECCCC---CCcEEEEEEEecCCCCCCCCCccceEEEEEEEeCCC-CCeeeEEeecCCCC
Q psy454 7 YFYSACFYSSCFGYRFCTRVNISRED---AQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTSS-EFSITDEIQSDKNF 82 (134)
Q Consensus 7 ~~~S~~F~~~~~Gy~w~l~vyp~g~~---~~~lsv~l~l~~g~~D~~l~Wp~~~~~~l~lldq~~-~~~~~~~~~~~~~~ 82 (134)
.++||+|+++..||+|+|++||||++ ++|||+||+|++|++|+.|+||++++++|+|+||.+ ..++.+++.++++.
T Consensus 63 ~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~ 142 (192)
T 2gkw_A 63 SLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNS 142 (192)
T ss_dssp CEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCCEEEEECCCSTTCCCEEEEECCCTTC
T ss_pred eEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEEEEEEEEECCCCCccceEEEEecCCCc
Confidence 69999999933399999999999975 789999999999999999999999999999999995 46677777777766
Q ss_pred CccCCCcccccccccccccceeecccccCCCCCCCccCCeEEEEEEEEe
Q psy454 83 DSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVTE 131 (134)
Q Consensus 83 ~~f~~p~~~~~~~~~~G~~~fi~~~~L~~~~~~~yl~~d~l~i~~~v~~ 131 (134)
..|.+|..+ . ..+|||++||++++| ++ +|||+||+|+|+|+|++
T Consensus 143 ~~F~~~~~~-~-~~~wG~~~Fi~~~~L-~~--~gyl~dD~l~I~~~V~v 186 (192)
T 2gkw_A 143 SSFKKPTGE-M-NIASGCPVFVAQTVL-EN--GTYIKDDTIFIKVIVDT 186 (192)
T ss_dssp TTSSCCSSS-B-CCCEEEEEEEEHHHH-HH--TTSCBTTEEEEEEEECC
T ss_pred ccccCCCCC-C-cCCCChHHEeEHHHh-Cc--CCCeeCCEEEEEEEEEc
Confidence 789888654 2 358999999999999 77 79999999999999964
No 4
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=100.00 E-value=7.5e-34 Score=202.15 Aligned_cols=121 Identities=31% Similarity=0.571 Sum_probs=106.0
Q ss_pred ceEEecceEeCCC--CeEEEEEEEECCCC---CCcEEEEEEEecCCCCCCCCCccceEEEEEEEeCCC-CCeeeEEeecC
Q psy454 6 RYFYSACFYSSCF--GYRFCTRVNISRED---AQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTSS-EFSITDEIQSD 79 (134)
Q Consensus 6 ~~~~S~~F~~~~~--Gy~w~l~vyp~g~~---~~~lsv~l~l~~g~~D~~l~Wp~~~~~~l~lldq~~-~~~~~~~~~~~ 79 (134)
+.++||+|++ | ||+|+|++||+|.+ ++|||+||+|+++++|+.++||++++++|.|+||.+ ..++.++++++
T Consensus 46 ~~i~S~~F~~--g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~a~~~l~Lldq~~~~~~~~~~~~~~ 123 (178)
T 4gjh_A 46 VSVFSQPFYT--SRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIVETFKAD 123 (178)
T ss_dssp CCEECCCEES--STTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCCCEEEEEECCTTSSCCCEEEEEECC
T ss_pred cEEECCCeEe--CCCCeEEEEEEEECCCCCCCCCEEEEEEEEecCCCCcccCCceEEEEEEEEEcCCCCcceeEEeeccC
Confidence 3899999999 7 99999999999976 689999999999999999999999999999999984 55667777777
Q ss_pred CCCCccCCCcccccccccccccceeecccccCCCCCCCccCCeEEEEEEEEe
Q psy454 80 KNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVTE 131 (134)
Q Consensus 80 ~~~~~f~~p~~~~~~~~~~G~~~fi~~~~L~~~~~~~yl~~d~l~i~~~v~~ 131 (134)
++...|.+|... ...+|||++||++++| ++++++||+||+|+|+|+|+.
T Consensus 124 ~~~~~F~~p~~~--~~~~wG~~~Fi~~~~L-~~~~~~yL~dD~l~I~~~V~i 172 (178)
T 4gjh_A 124 PNSSSFKRPDGE--MNIASGCPRFVSHSTL-ENSKNTYIKDDTLFLKVAVDL 172 (178)
T ss_dssp TTCGGGSCCSSS--BCCCEEEEEEEEHHHH-HCTTCCSSBTTBEEEEEEECC
T ss_pred CccccccCCccc--ccCCcChhheeEHHHh-hccccCcCcCCEEEEEEEEEe
Confidence 667889888643 2358999999999999 766689999999999999954
No 5
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=100.00 E-value=8.8e-34 Score=208.92 Aligned_cols=122 Identities=32% Similarity=0.608 Sum_probs=106.5
Q ss_pred ceEEecceEeCCCCeEEEEEEEECCCC---CCcEEEEEEEecCCCCCCCCCccceEEEEEEEeCCCC-CeeeEEeecCCC
Q psy454 6 RYFYSACFYSSCFGYRFCTRVNISRED---AQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTSSE-FSITDEIQSDKN 81 (134)
Q Consensus 6 ~~~~S~~F~~~~~Gy~w~l~vyp~g~~---~~~lsv~l~l~~g~~D~~l~Wp~~~~~~l~lldq~~~-~~~~~~~~~~~~ 81 (134)
+.++||+|+++..||+|+|++||||.+ ++|||+||+|++|++|+.|+||++++++|+|+||.+. .++.+++.++++
T Consensus 98 ~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~a~~~l~lldq~~~~~~~~~~~~~~~~ 177 (228)
T 1flk_A 98 LSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPN 177 (228)
T ss_dssp CCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCCCCEEEEECCCSSSCCCEEEEECCCTT
T ss_pred eeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEEEEEEEEEEcCCCCccceeeeecCCCc
Confidence 489999999933399999999999976 7899999999999999999999999999999999954 467777777766
Q ss_pred CCccCCCcccccccccccccceeecccccCCCCCCCccCCeEEEEEEEEec
Q psy454 82 FDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVTEM 132 (134)
Q Consensus 82 ~~~f~~p~~~~~~~~~~G~~~fi~~~~L~~~~~~~yl~~d~l~i~~~v~~~ 132 (134)
...|.+|... . ..+|||++||++++| ++ +|||+||+|+|+|+|++.
T Consensus 178 ~~~F~rp~~~-~-~~~wG~~~Fi~~~~L-~~--~gyL~dD~l~I~~~V~v~ 223 (228)
T 1flk_A 178 SSSFKKPTGE-M-NIASGCPVFVAQTVL-EN--GTYIKDDTIFIKVIVDTS 223 (228)
T ss_dssp CTTSSSCSSS-B-CCCCSEEEEEEHHHH-SS--STTCCSSEEEEEEECCCT
T ss_pred cccccCCccC-C-CCCcCHHHeeEHHHH-cc--CCCccCCEEEEEEEEEcc
Confidence 6789988654 2 368999999999999 77 899999999999999864
No 6
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=100.00 E-value=5.9e-33 Score=195.33 Aligned_cols=122 Identities=30% Similarity=0.575 Sum_probs=104.7
Q ss_pred eEEecceEeCCCCeEEEEEEEECCCC---CCcEEEEEEEecCCCCCCCCCccceEEEEEEEeCCCCCeeeEEeecCCCCC
Q psy454 7 YFYSACFYSSCFGYRFCTRVNISRED---AQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTSSEFSITDEIQSDKNFD 83 (134)
Q Consensus 7 ~~~S~~F~~~~~Gy~w~l~vyp~g~~---~~~lsv~l~l~~g~~D~~l~Wp~~~~~~l~lldq~~~~~~~~~~~~~~~~~ 83 (134)
.++||+|+++.|||+|+|++||||.+ ++|||+||+|+.+++|+.++||++++++|.|+||.++++....+.++++..
T Consensus 42 ~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~~~~~l~ll~q~~~~~~~~~~~~~~~~~ 121 (168)
T 1d00_A 42 AIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSS 121 (168)
T ss_dssp CEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCCEEEEECCTTSSCCEEEEECCCTTSG
T ss_pred EEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCCCCccCCCceEEEEEEEEECCCCCccceeccccCcchh
Confidence 49999999766999999999999975 689999999999999888999999999999999998767666666655556
Q ss_pred ccCCCcccccccccccccceeecccccCCCCCCCccCCeEEEEEEEEec
Q psy454 84 SFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVTEM 132 (134)
Q Consensus 84 ~f~~p~~~~~~~~~~G~~~fi~~~~L~~~~~~~yl~~d~l~i~~~v~~~ 132 (134)
.|.+|... ...+|||++||++++| ++. +|||+||+|+|+|+|++.
T Consensus 122 ~f~~p~~~--~~~~~G~~~Fi~~~~L-~~~-~gyl~dD~l~I~~~V~v~ 166 (168)
T 1d00_A 122 SFQRPVND--MNIASGCPLFCPVSKM-EAK-NSYVRDDAIFIKAIVDLT 166 (168)
T ss_dssp GGSCCSSS--BCCCEEEEEEEETTTT-TSS-SSSSBTTEEEEEEEECCT
T ss_pred hccCCCcC--CCCCcCcceEeEHHHh-ccc-CCceeCCEEEEEEEEEec
Confidence 78887644 2368999999999999 762 399999999999999764
No 7
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=100.00 E-value=6.2e-33 Score=199.40 Aligned_cols=122 Identities=30% Similarity=0.585 Sum_probs=106.6
Q ss_pred eEEecceEeCCCCeEEEEEEEECCCC---CCcEEEEEEEecCCCCCCCCCccceEEEEEEEeCCCCCeeeEEeecCCCCC
Q psy454 7 YFYSACFYSSCFGYRFCTRVNISRED---AQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTSSEFSITDEIQSDKNFD 83 (134)
Q Consensus 7 ~~~S~~F~~~~~Gy~w~l~vyp~g~~---~~~lsv~l~l~~g~~D~~l~Wp~~~~~~l~lldq~~~~~~~~~~~~~~~~~ 83 (134)
.++||+|+++.|||+|+|++||+|.+ ++|||+||+|+.+++|+.++||++++++|.|+||.+.++..+++.++++..
T Consensus 66 ~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a~~~l~lldq~~~~~~~~~~~~~~~~~ 145 (192)
T 1ca9_A 66 AIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSS 145 (192)
T ss_dssp CEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCCEEEEECCTTSSCCEEEEECCCTTSG
T ss_pred eEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCCCceEEEEEEEEECCCCCceeeEeeccCCchh
Confidence 69999999988899999999999976 689999999999999888999999999999999997767666676666566
Q ss_pred ccCCCcccccccccccccceeecccccCCCCCCCccCCeEEEEEEEEec
Q psy454 84 SFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVTEM 132 (134)
Q Consensus 84 ~f~~p~~~~~~~~~~G~~~fi~~~~L~~~~~~~yl~~d~l~i~~~v~~~ 132 (134)
.|.+|... ...+|||++||++++| ++ .+|||+||+|+|+|+|++.
T Consensus 146 ~f~rp~~~--~~~~wG~~~Fi~~~~L-~~-~~gyl~dD~l~I~~~V~V~ 190 (192)
T 1ca9_A 146 SFQRPVND--MNIASGCPLFCPVSKM-EA-KNSYVRDDAIFIKAIVDLT 190 (192)
T ss_dssp GGSCCSSS--BCCCEEEEEEEETHHH-HS-SCSSCBTTEEEEEEEECCT
T ss_pred hhcCCccC--CCCCcChhheeEHHHh-hh-ccCCEeCCEEEEEEEEEec
Confidence 79888654 2368999999999999 72 3799999999999999875
No 8
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=99.95 E-value=2e-28 Score=200.17 Aligned_cols=125 Identities=28% Similarity=0.499 Sum_probs=107.4
Q ss_pred cCceEEecceEeCCCCeEEEEEEEECCCCCCcEEEEEEEecCCCCCCCCCccc-eEEEEEEEeCC----CCCeeeEEeec
Q psy454 4 INRYFYSACFYSSCFGYRFCTRVNISREDAQYLSLFIHLVQGENDDILDWPFV-GRIRFTALNTS----SEFSITDEIQS 78 (134)
Q Consensus 4 ~~~~~~S~~F~~~~~Gy~w~l~vyp~g~~~~~lsv~l~l~~g~~D~~l~Wp~~-~~~~l~lldq~----~~~~~~~~~~~ 78 (134)
.+..++||+||++ .||+|+|.+||++ ++|+|||++|++|++|+.|+|||. .+++|+||||. .+++.++++++
T Consensus 422 ~~~~~~Sp~Fys~-~GY~~~v~l~~~~--~~~~~~~~~l~sG~~D~~L~WP~~~~q~t~~llDQ~pd~~~rms~~~s~tt 498 (592)
T 4gwm_A 422 PNGTLYSPPFYSS-KGYAFQIYLNLAH--VTNAGIYFHLISGANDDQLQWPCPWQQATMTLLDQNPDIRQRMSNQRSITT 498 (592)
T ss_dssp TTCEEECCCEECT-TSCEEEEEEECCS--SSEEEEEEEEECCTTGGGSCSSCCSEEEEEEECCCCSSGGGCCCEEEEEEC
T ss_pred CCCceeCCCccCC-CCeEEEEEEecCC--CceEEEEEEEecCCCCCCccCCCCCCEEEEEEeCCCCChHhcCceeEEEEc
Confidence 3568999999996 6999999999986 679999999999999999999995 68999999998 37888999987
Q ss_pred CCCC------CccCCCccc-----------ccccccccccceeecccccCCCCCCCccCCeEEEEEEEEeccC
Q psy454 79 DKNF------DSFKRPVNF-----------FLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVTEMTH 134 (134)
Q Consensus 79 ~~~~------~~f~~p~~~-----------~~~~~~~G~~~fi~~~~L~~~~~~~yl~~d~l~i~~~v~~~~~ 134 (134)
++.. ..|.||... +.++.+|||+.||+|+.| .+ +.||+||.++|.++|++|+|
T Consensus 499 dp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l-~~--r~fiK~d~~~i~~~~eD~~~ 568 (592)
T 4gwm_A 499 DPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERL-KS--RDFIKGDDVYILLTVEDISH 568 (592)
T ss_dssp CTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHH-TS--TTSSBTTBEEEEEEEEECGG
T ss_pred CCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHH-hh--cCcccCCeEEEEEEEEeCcc
Confidence 6532 248888632 123468999999999999 76 88999999999999999987
No 9
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.95 E-value=2e-27 Score=163.52 Aligned_cols=112 Identities=26% Similarity=0.363 Sum_probs=91.1
Q ss_pred cCceEEecceEeCCCCe---EEEEEEEECCCC---CCcEEEEEEEecCCCCCCCCCccceEEEEEEEeCCCCCeeeEEee
Q psy454 4 INRYFYSACFYSSCFGY---RFCTRVNISRED---AQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTSSEFSITDEIQ 77 (134)
Q Consensus 4 ~~~~~~S~~F~~~~~Gy---~w~l~vyp~g~~---~~~lsv~l~l~~g~~D~~l~Wp~~~~~~l~lldq~~~~~~~~~~~ 77 (134)
.++.++||+|++ ||| +|+|++||+|.+ .+|||+||+++++ ..|+++++++|+|+||.+..+...
T Consensus 27 ~g~~~~S~~F~~--gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~-----~~w~v~a~f~l~llnq~~~~~~~~--- 96 (145)
T 3ivv_A 27 MGEVIKSSTFSS--GANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC-----PKSEVRAKFKFSILNAKGEETKAM--- 96 (145)
T ss_dssp TTCCEECCCEEE--SGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC-----SSSEEEEEEEEEEECTTSCEEEEE---
T ss_pred CCCEEECCCcCC--CCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC-----CCCcEEEEEEEEEEecCCCceeee---
Confidence 467899999999 885 999999999976 6899999999975 379999999999999986544321
Q ss_pred cCCCCCccCCCcccccccccccccceeecccccCCCCCCCccCCeEEEEEEEEecc
Q psy454 78 SDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVTEMT 133 (134)
Q Consensus 78 ~~~~~~~f~~p~~~~~~~~~~G~~~fi~~~~L~~~~~~~yl~~d~l~i~~~v~~~~ 133 (134)
+.+..+.|. +..+|||++||++++| +++.++||+||+|+|+|+|+++.
T Consensus 97 ~~~~~~~F~-------~~~~wG~~~Fi~~~~L-~~~~~~yl~dD~l~I~~~V~V~~ 144 (145)
T 3ivv_A 97 ESQRAYRFV-------QGKDWGFKKFIRRDFL-LDEANGLLPDDKLTLFCEVSVVQ 144 (145)
T ss_dssp ECSSCEEEE-------TTCEEEEEEEEEHHHH-HCGGGCSSGGGCEEEEEEEEECC
T ss_pred cccceEEec-------CCCCcCHHHeEEhhhh-ccccCCcEeCCEEEEEEEEEEEe
Confidence 112223453 1358999999999999 55458999999999999999985
No 10
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.93 E-value=3.7e-25 Score=153.57 Aligned_cols=111 Identities=16% Similarity=0.233 Sum_probs=88.2
Q ss_pred ceEEecceEeCCCCeEEEEEEEECCCC----CCcEEEEEEEecCCCCCCCCCccceEEEEEEEeCCCCC-eeeEEeecCC
Q psy454 6 RYFYSACFYSSCFGYRFCTRVNISRED----AQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTSSEF-SITDEIQSDK 80 (134)
Q Consensus 6 ~~~~S~~F~~~~~Gy~w~l~vyp~g~~----~~~lsv~l~l~~g~~D~~l~Wp~~~~~~l~lldq~~~~-~~~~~~~~~~ 80 (134)
+.++||+|++ |||+|+|++||+|.+ .+|||+||++. ++. ....|++.++++|.|+||.+.. +..+..
T Consensus 33 ~~~~S~~f~~--gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~-~~~-~~~~w~v~a~~~l~l~~~~~~~~~~~~~~---- 104 (155)
T 2foj_A 33 ESVLSPPCFV--RNLPWKIMVMPRFYPDRPHQKSVGFFLQCN-AES-DSTSWSCHAQAVLKIINYRDDEKSFSRRI---- 104 (155)
T ss_dssp SCEECCCEEE--TTEEEEEEEEEEC------CBEEEEEEEES-TTC-CCSSCEEEEEEEEEECCSSCGGGCEEEEE----
T ss_pred CceEcCCEEE--CCccEEEEEEECCCCCCCCCCEEEEEEEeC-CCC-CCCCCEEEEEEEEEEEcCCCCcceEEecc----
Confidence 6799999999 999999999999853 58999999985 443 3567999999999999998543 433221
Q ss_pred CCCccCCCcccccccccccccceeecccccCCCCCCCccCCeEEEEEEEEec
Q psy454 81 NFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVTEM 132 (134)
Q Consensus 81 ~~~~f~~p~~~~~~~~~~G~~~fi~~~~L~~~~~~~yl~~d~l~i~~~v~~~ 132 (134)
.+.|.+ +..+|||++||++++| +++.+|||+||+|+|+|.|.+.
T Consensus 105 -~~~F~~------~~~~wG~~~Fi~~~~L-~~~~~~yl~dD~l~Ie~~V~V~ 148 (155)
T 2foj_A 105 -SHLFFH------KENDWGFSNFMAWSEV-TDPEKGFIDDDKVTFEVFVQAD 148 (155)
T ss_dssp -EEEEET------TBCEEEEEEEEEHHHH-TCTTTSSCBTTBEEEEEEEEEC
T ss_pred -EEEeCC------CCCCEeECCeEEHHHh-cCcCCCceECCEEEEEEEEEEe
Confidence 134542 2357999999999999 7556899999999999999875
No 11
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.88 E-value=1.6e-22 Score=153.83 Aligned_cols=111 Identities=27% Similarity=0.390 Sum_probs=87.2
Q ss_pred cCceEEecceEeCCCC---eEEEEEEEECCCC---CCcEEEEEEEecCCCCCCCCCccceEEEEEEEeCCCCCeeeEEee
Q psy454 4 INRYFYSACFYSSCFG---YRFCTRVNISRED---AQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTSSEFSITDEIQ 77 (134)
Q Consensus 4 ~~~~~~S~~F~~~~~G---y~w~l~vyp~g~~---~~~lsv~l~l~~g~~D~~l~Wp~~~~~~l~lldq~~~~~~~~~~~ 77 (134)
.++.++||+|++ || |+|+|++||||.+ ++|||+||++.+++ .||+.++++|.|+||.++......
T Consensus 23 ~~~~i~S~~F~~--gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~~-----~~~v~a~~~~~l~~~~~~~~~~~~-- 93 (312)
T 3hqi_A 23 MGEVIKSSTFSS--GANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP-----KSEVRAKFKFSILNAKGEETKAME-- 93 (312)
T ss_dssp TTCCEECCCBCC----CCCCEEEEEEETTCCC--CTTEEEEEEEEEECC-----C-CEEEEEEEEEECTTSCEEEEEE--
T ss_pred CCCeEeeCCccc--CCCCCceEEEEEECCCCCccCCCcEEEEEEEcCCC-----CCcEEEEEEEEEEeCCCCcccccc--
Confidence 367899999999 77 5999999999975 68999999998654 689999999999999865432211
Q ss_pred cCCCCCccCCCcccccccccccccceeecccccCCCCCCCccCCeEEEEEEEEec
Q psy454 78 SDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVTEM 132 (134)
Q Consensus 78 ~~~~~~~f~~p~~~~~~~~~~G~~~fi~~~~L~~~~~~~yl~~d~l~i~~~v~~~ 132 (134)
......|.+ ..+|||++||++++| +++.+|||+||+++|+|+|+++
T Consensus 94 -~~~~~~F~~-------~~~wG~~~Fi~~~~L-~~~~~~yl~dD~l~i~~~v~v~ 139 (312)
T 3hqi_A 94 -SQRAYRFVQ-------GKDWGFKKFIRRGFL-LDEANGLLPDDKLTLFCEVSVV 139 (312)
T ss_dssp -CSSCEEECT-------TCEEEEEEEEEHHHH-TCGGGCCCGGGCEEEEEEEEEE
T ss_pred -cCCceeCCC-------CCCcCHHHhccHHHh-hccccCeecCCEEEEEEEEEEE
Confidence 112234432 247999999999999 6656799999999999999876
No 12
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.81 E-value=3.6e-20 Score=149.80 Aligned_cols=110 Identities=15% Similarity=0.219 Sum_probs=85.4
Q ss_pred eEEecceEeCCCCeEEEEEEEECCCC----CCcEEEEEEEecCCCCCCCCCccceEEEEEEEeCCCC-CeeeEEeecCCC
Q psy454 7 YFYSACFYSSCFGYRFCTRVNISRED----AQYLSLFIHLVQGENDDILDWPFVGRIRFTALNTSSE-FSITDEIQSDKN 81 (134)
Q Consensus 7 ~~~S~~F~~~~~Gy~w~l~vyp~g~~----~~~lsv~l~l~~g~~D~~l~Wp~~~~~~l~lldq~~~-~~~~~~~~~~~~ 81 (134)
.++|++|.+ |||+|+|.+||+|+. .+|||+||.+... ...-.|.+.++++|.|+||.+. .+..+..
T Consensus 46 ~~~S~~F~v--gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~--~~~~~w~v~a~f~l~l~n~~~~~~~~~~~~----- 116 (522)
T 2f1z_A 46 SVLSPPCFV--RNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE--SDSTSWSCHAQAVLKIINYRDDEKSFSRRI----- 116 (522)
T ss_dssp CEECCCEEE--TTEEEEEEECBC--------CBBCEEEEESTT--CCCSSCBEEEEEEEEECCTTCGGGCEEEEC-----
T ss_pred ceeCCCEEE--CCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC--CCCCCceEEEEEEEEEEcCCCCccceeccc-----
Confidence 799999999 999999999999952 6899999999865 2345799999999999999853 3333221
Q ss_pred CCccCCCcccccccccccccceeecccccCCCCCCCccCCeEEEEEEEEec
Q psy454 82 FDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLMEDDTFVIKTQVTEM 132 (134)
Q Consensus 82 ~~~f~~p~~~~~~~~~~G~~~fi~~~~L~~~~~~~yl~~d~l~i~~~v~~~ 132 (134)
.+.|.. +..+|||++||++++| .++..|||.||+++|+|.|.+.
T Consensus 117 ~~~F~~------~~~~wG~~~Fi~~~~L-~~~~~g~L~nD~l~i~~~V~v~ 160 (522)
T 2f1z_A 117 SHLFFH------KENDWGFSNFMAWSEV-TDPEKGFIDDDKVTFEVFVQAD 160 (522)
T ss_dssp CEEECG------GGCEEEESSSSBHHHH-SCGGGSSCBTTBEEEEEEEEEC
T ss_pred eeEecC------CCCCcchhheeEhhHh-cCcccCcccCCcEEEEEEeecc
Confidence 133431 2357999999999999 5555899999999999999874
No 13
>1jya_A YOPE regulator; specific chaperone, type III secretion; 1.74A {Yersinia pseudotuberculosis} SCOP: d.198.1.1 PDB: 1k6z_A 1n5b_A 1l2w_A
Probab=24.61 E-value=83 Score=20.50 Aligned_cols=34 Identities=3% Similarity=-0.192 Sum_probs=26.2
Q ss_pred cCceEEecceEeCCCCeEEEEEEEECCCCCCcEEEEEEEecC
Q psy454 4 INRYFYSACFYSSCFGYRFCTRVNISREDAQYLSLFIHLVQG 45 (134)
Q Consensus 4 ~~~~~~S~~F~~~~~Gy~w~l~vyp~g~~~~~lsv~l~l~~g 45 (134)
+.+.|+ .|.+ ||+...|..||. ++|.+|-.|.+.
T Consensus 22 ~~e~I~--SL~V--d~~t~hite~p~----~~LlmFs~L~~~ 55 (130)
T 1jya_A 22 TIEPVI--GVKV--GEFACHITEHPV----GQILMFTLPSLD 55 (130)
T ss_dssp SCCSEE--EEEE--TTEEEEEEECST----TEEEEEECCCCC
T ss_pred CcCceE--EEEE--CCeEEEEEecCC----CeEEEEeccCcc
Confidence 344555 5778 999999999998 479999888643
Done!