RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy454
(134 letters)
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling,
TRAF, adapter protein, cell surviVal; 2.30A {Homo
sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Length = 192
Score = 94.3 bits (234), Expect = 2e-25
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Query: 1 MKEINRYFYSACFYSSCFGYRFCTRVNI---SREDAQYLSLFIHLVQGENDDILDWPFVG 57
+ +S FY+S +GY+ C R+ + +LSLF +++G ND +L WPF
Sbjct: 60 VAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 119
Query: 58 RIRFTALNTSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFL 117
++ L+ ++ + D + D SF+RPVN A G F V+ ++ ++
Sbjct: 120 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVND--MNIASGCPLFCPVSK-MEAKNSYV 176
Query: 118 MEDDTFVIKTQVTEMTH 134
DD IK V ++T
Sbjct: 177 -RDDAIFIKAIV-DLTG 191
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling
protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A
1lb4_A
Length = 160
Score = 90.8 bits (225), Expect = 2e-24
Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 11/133 (8%)
Query: 5 NRYFYSACFYSSCFGYRFCTRVNI----SREDAQYLSLFIHLVQGENDDILDWPFVGRIR 60
+S FY+ GY+ C R+++ ++ A Y+SLF+H +QGE D L WPF G IR
Sbjct: 26 PVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIR 85
Query: 61 FTALN---TSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFL 117
T L+ + + + + +F+RP N K FG+ F+ + + R F+
Sbjct: 86 LTILDQSEAPVRQNHEEIMDAKPELLAFQRPTI-PRNPKGFGYVTFMHLEALRQ--RTFI 142
Query: 118 MEDDTFVIKTQVT 130
+DDT +++ +V+
Sbjct: 143 -KDDTLLVRCEVS 154
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich,
protein-peptide complex, apoptosis; 2.00A {Homo sapiens}
SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A
1d01_A 1d0a_A
Length = 168
Score = 90.8 bits (225), Expect = 2e-24
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Query: 1 MKEINRYFYSACFYSSCFGYRFCTRVNI---SREDAQYLSLFIHLVQGENDDILDWPFVG 57
+ +S FY+S +GY+ C R+ + +LSLF +++G ND +L WPF
Sbjct: 36 VAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 95
Query: 58 RIRFTALNTSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFL 117
++ L+ ++ + D + D SF+RPVN A G F V+ ++ ++
Sbjct: 96 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVND--MNIASGCPLFCPVSK-MEAKNSYV 152
Query: 118 MEDDTFVIKTQVTEMTH 134
DD IK V ++T
Sbjct: 153 -RDDAIFIKAIV-DLTG 167
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF
receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB:
1kzz_A 1l0a_A 1zms_A 1rf3_A
Length = 192
Score = 90.1 bits (223), Expect = 7e-24
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 11/140 (7%)
Query: 1 MKEINRYFYSACFYSSCFGYRFCTRVNI---SREDAQYLSLFIHLVQGENDDILDWPFVG 57
+ YS FY+ FGY+ C RV + +LSLF +++GE D +L WPF
Sbjct: 57 VMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 116
Query: 58 RIRFTALN-TSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGF 116
++ ++ SS + D + D N SFK+P A G F+ + + +
Sbjct: 117 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGE--MNIASGCPVFVAQTVLEN--GTY 172
Query: 117 LMEDDTFVIKTQV--TEMTH 134
+ +DDT IK V +++
Sbjct: 173 I-KDDTIFIKVIVDTSDLPD 191
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3,
CD40-binding protein, apoptosis; 2.80A {Homo sapiens}
SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Length = 228
Score = 90.1 bits (223), Expect = 2e-23
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 11/140 (7%)
Query: 1 MKEINRYFYSACFYSSCFGYRFCTRVNI---SREDAQYLSLFIHLVQGENDDILDWPFVG 57
+ YS FY+ FGY+ C RV + +LSLF +++GE D +L WPF
Sbjct: 93 VMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 152
Query: 58 RIRFTALN-TSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGF 116
++ ++ SS + D + D N SFK+P A G F+ + + +
Sbjct: 153 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGE--MNIASGCPVFVAQTVLEN--GTY 208
Query: 117 LMEDDTFVIKTQV--TEMTH 134
+ +DDT IK V +++
Sbjct: 209 I-KDDTIFIKVIVDTSDLPD 227
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation
pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A
3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Length = 145
Score = 51.9 bits (124), Expect = 2e-09
Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 20/134 (14%)
Query: 1 MKEINRYFYSACFYS-SCFGYRFCTRV---NISREDAQYLSLFIHLVQGENDDILDWPFV 56
+E+ S+ F S + ++C RV + E YLSL++ LV
Sbjct: 24 REEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPK-----SEVR 78
Query: 57 GRIRFTALNTSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGF 116
+ +F+ LN E + + F+ K +GF FIR +LD G
Sbjct: 79 AKFKFSILNAKGE----------ETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGL 128
Query: 117 LMEDDTFVIKTQVT 130
L DD + +V+
Sbjct: 129 L-PDDKLTLFCEVS 141
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase;
1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A
3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Length = 155
Score = 50.6 bits (121), Expect = 5e-09
Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 21/133 (15%)
Query: 3 EINRYFYSACFYSSCFGYRFCTRV----NISREDAQYLSLFIHLVQGENDDILDWPFVGR 58
++ S + + V R + + F+ D W +
Sbjct: 30 RLSESVLSPPCF--VRNLPWKIMVMPRFYPDRPHQKSVGFFLQCN--AESDSTSWSCHAQ 85
Query: 59 IRFTALNTSSEFSITDEIQSDKNFDSFKRPVN-FFLNKKAFGFNNFIRVADVLDPGRGFL 117
+N D +R + FF + +GF+NF+ ++V DP +GF+
Sbjct: 86 AVLKIIN-----------YRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFI 134
Query: 118 MEDDTFVIKTQVT 130
+DD + V
Sbjct: 135 -DDDKVTFEVFVQ 146
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 38.0 bits (88), Expect = 4e-04
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 20/138 (14%)
Query: 1 MKEINRYFYSACFYS-SCFGYRFCTRVN---ISREDAQYLSLFIHLVQGENDDILDWPFV 56
+E+ S+ F S + ++C RVN + E YLSL++ LV ++
Sbjct: 20 REEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEV------ 73
Query: 57 GRIRFTALNTSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGF 116
R +F +FSI + + ++ + F+ K +GF FIR +LD G
Sbjct: 74 -RAKF-------KFSILNA-KGEETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEANGL 124
Query: 117 LMEDDTFVIKTQVTEMTH 134
L DD + +V+ +
Sbjct: 125 L-PDDKLTLFCEVSVVQD 141
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.058
Identities = 25/150 (16%), Positives = 50/150 (33%), Gaps = 46/150 (30%)
Query: 2 KEINRYFYSACFYSSCFGYRFCTRVNIS-------REDAQYLSLFIHLV--QGENDDILD 52
KE+ + + +A + R + + S +AQ +++F QG DD +
Sbjct: 120 KELIKNYITARIMAK----RPFDKKSNSALFRAVGEGNAQLVAIF----GGQGNTDDYFE 171
Query: 53 ---------WPFVGR-IRFTA--LNTSSEFSITDEIQSDKNFDSFK-------RPVNFFL 93
VG I+F+A L+ ++ E + + + P +L
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 94 NKKAFGFN--------NFIRVADVL--DPG 113
+++ A +L PG
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGFTPG 261
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.13
Identities = 19/99 (19%), Positives = 27/99 (27%), Gaps = 18/99 (18%)
Query: 27 NISREDAQYLSLFIHLVQG-----ENDDILDWPFVGRIRFTALNTSSEFSITDEI-QSDK 80
QY + + D+ D P + + E D I S
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP---KSILS----KEEI---DHIIMSKD 59
Query: 81 NFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFLME 119
R L+K+ F V +VL FLM
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKF--VEEVLRINYKFLMS 96
>2rcq_A CRBP-II, retinol-binding protein II, cellular; cellular retinol
binding protein II, lipid-binding protein, X-RAY,
cytoplasm, transport, vitamin A; HET: TLA; 1.20A {Homo
sapiens} PDB: 2rct_A* 1b4m_A 1eii_A* 1opa_A 1opb_A*
1kqw_A* 1kqx_A
Length = 141
Score = 28.4 bits (63), Expect = 0.43
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 66 TSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIR-VADVLDPGRGFLMEDDTFV 124
++ + + T E++S++NF+ + KA + R +A L + + D F
Sbjct: 4 STRDQNGTWEMESNENFEGY---------MKALDIDFATRKIAVRLTQTKVIDQDGDNFK 54
Query: 125 IKTQVTEMTH 134
KT T +
Sbjct: 55 TKTTSTFRNY 64
>3q6l_A Fatty acid-binding protein, adipocyte; lipid chaperone, lipid
binding protein; 1.40A {Homo sapiens} PDB: 2q9s_A*
2qm9_A*
Length = 152
Score = 27.3 bits (60), Expect = 1.3
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 10/66 (15%)
Query: 70 FSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIR-VADVLDPGRGFLMEDDTFVIKTQ 128
F T ++ S +NFD + K G R VA + P + D IK++
Sbjct: 25 FVGTWKLVSSENFDDYM---------KEVGVGFATRKVAGMAKPNMIISVNGDVITIKSE 75
Query: 129 VTEMTH 134
T
Sbjct: 76 STFKNT 81
>1ifc_A Intestinal fatty acid binding protein; lipid-binding protein; 1.19A
{Rattus norvegicus} SCOP: b.60.1.2 PDB: 1ael_A 1icm_A*
1ifb_A 1ure_A* 2ifb_A* 3akn_A* 1icn_A* 1t8v_A 1dc9_A
1a57_A 1kzx_A 1kzw_A 3akm_A* 3ifb_A 1sa8_A
Length = 132
Score = 26.8 bits (59), Expect = 1.8
Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 10/66 (15%)
Query: 70 FSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIR-VADVLDPGRGFLMEDDTFVIKTQ 128
F T ++ ++N++ F + G N R + + E + F +K
Sbjct: 3 FDGTWKVDRNENYEKFM---------EKMGINVVKRKLGAHDNLKLTITQEGNKFTVKES 53
Query: 129 VTEMTH 134
Sbjct: 54 SNFRNI 59
>3vg7_A Fatty acid-binding protein, liver; lfabp, S-SAD, copper kalpha,
palmitic acid, lipid binding PR; HET: PLM; 1.44A {Homo
sapiens} PDB: 3b2i_A* 3b2j_A* 3b2k_A* 3b2l_A* 3stk_A*
3stm_X* 3stn_A 3vg2_A* 3vg3_A* 3vg4_A* 3vg5_A* 3vg6_A*
3b2h_A* 2py1_A 2l67_A 2l68_A 2lkk_A* 2ju3_A 2ju7_A
2ju8_A* ...
Length = 132
Score = 26.4 bits (58), Expect = 2.0
Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 10/66 (15%)
Query: 70 FSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIR-VADVLDPGRGFLMEDDTFVIKTQ 128
FS ++QS +NF++F KA G + + + F
Sbjct: 6 FSGKYQLQSQENFEAFM---------KAIGLPEELIQKGKDIKGVSEIVQNGKHFKFTIT 56
Query: 129 VTEMTH 134
Sbjct: 57 AGSKVI 62
>1mdc_A Insect fatty acid binding protein; HET: PLM; 1.75A {Manduca sexta}
SCOP: b.60.1.2
Length = 132
Score = 26.4 bits (58), Expect = 2.4
Identities = 8/66 (12%), Positives = 17/66 (25%), Gaps = 10/66 (15%)
Query: 70 FSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIR-VADVLDPGRGFLMEDDTFVIKTQ 128
+ +NFD F K+ G ++ P + D++ +
Sbjct: 4 LGKVYSLVKQENFDGFL---------KSAGLSDDKIQALVSDKPTQKMEANGDSYSNTST 54
Query: 129 VTEMTH 134
Sbjct: 55 GGGGAK 60
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 26.5 bits (58), Expect = 3.0
Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 46 ENDDILDWPFVGRIRFTALNTSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIR 105
D ++++ + + E+Q+ +N + + + +F NK + + F
Sbjct: 111 SADTLVEF-----LLDVLEDPVELIEGERELQAFENIEDEIKLIGYFKNKDSEHYKAFKE 165
Query: 106 VADVLDPGRGFLMEDDTFVIK 126
A+ P F D+ V K
Sbjct: 166 AAEEFHPYIPFFATFDSKVAK 186
>1fdq_A Fatty acid-binding protein, brain; omega-3, long chain poly
unsaturated fatty acid, lipid binding protein; HET: HXA;
2.10A {Homo sapiens} SCOP: b.60.1.2 PDB: 1fe3_A* 1jjx_A
Length = 131
Score = 26.0 bits (57), Expect = 3.3
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 10/61 (16%)
Query: 75 EIQSDKNFDSFKRPVNFFLNKKAFGFNNFIR-VADVLDPGRGFLMEDDTFVIKTQVTEMT 133
++ + +NFD + KA G R V +V P E D VI+T T
Sbjct: 9 KLTNSQNFDEYM---------KALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN 59
Query: 134 H 134
Sbjct: 60 T 60
>2qo4_A Liver-basic fatty acid binding protein; liver bIle acid-binding
protein, BABP, fatty acid-binding PR FABP, cholic acid
cholate, bIle acid; HET: CHD; 1.50A {Danio rerio} PDB:
2qo6_A* 2qo5_A* 2ftb_A* 2ft9_A*
Length = 126
Score = 26.0 bits (57), Expect = 3.5
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 10/66 (15%)
Query: 70 FSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIR-VADVLDPGRGFLMEDDTFVIKTQ 128
FS T ++ + +N++ F +A + +A + P F I ++
Sbjct: 3 FSGTWQVYAQENYEEFL---------RAISLPEEVIKLAKDVKPVTEIQQNGSDFTITSK 53
Query: 129 VTEMTH 134
T
Sbjct: 54 TPGKTV 59
>1p6p_A Fatty acid-binding protein, liver; beta barrel, lipid binding
protein; 2.50A {Bufo arenarum} SCOP: b.60.1.2
Length = 125
Score = 25.6 bits (56), Expect = 4.0
Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 70 FSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIR-VADVLDPGRGFLMEDDTFVIKTQ 128
F+ T + + +N+++F + G I VA ++P + FV+ ++
Sbjct: 2 FNGTWNVYAQENYENFL---------RTVGLPEDIIKVAKDVNPVIEIEQNGNEFVVTSK 52
Query: 129 VTEMTH 134
+ TH
Sbjct: 53 TPKQTH 58
>2wut_A Myelin P2 protein; transport, lipid-binding, fatty acid binding
protein, peripheral membrane protein; HET: PLM; 1.85A
{Homo sapiens} PDB: 1pmp_A*
Length = 133
Score = 25.7 bits (56), Expect = 4.0
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 10/68 (14%)
Query: 68 SEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIR-VADVLDPGRGFLMEDDTFVIK 126
++F T ++ S +NFD + KA G R + ++ P + D I+
Sbjct: 4 NKFLGTWKLVSSENFDDYM---------KALGVGLATRKLGNLAKPTVIISKKGDIITIR 54
Query: 127 TQVTEMTH 134
T+ T
Sbjct: 55 TESTFKNT 62
>2f73_A L-FABP, fatty acid-binding protein, liver; structural genomics,
structural genomics consortium, SGC, lipid binding
protein; 2.50A {Homo sapiens} SCOP: b.60.1.2
Length = 149
Score = 25.7 bits (56), Expect = 4.1
Identities = 10/73 (13%), Positives = 20/73 (27%), Gaps = 10/73 (13%)
Query: 62 TALNTSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIR-VADVLDPGRGFLMED 120
S FS ++QS +NF++F + + G + + +
Sbjct: 17 NLYFQSMSFSGKYQLQSQENFEAFMKAI---------GLPEELIQKGKDIKGVSEIVQNG 67
Query: 121 DTFVIKTQVTEMT 133
F
Sbjct: 68 KHFKFTITAGSKV 80
>1mvg_A Liver basic fatty acid binding protein; beta-barrel, calycin, ten
antiparallel beta strands, helix- turn-helix motif,
transport protein; NMR {Gallus gallus} SCOP: b.60.1.2
PDB: 1tvq_A 1tw4_A* 1zry_A 2jn3_A* 2k62_A*
Length = 125
Score = 25.6 bits (56), Expect = 4.5
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 70 FSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIR-VADVLDPGRGFLMEDDTFVIKTQ 128
FS T ++ + +N++ F KA + +A + P + D FV+ ++
Sbjct: 2 FSGTWQVYAQENYEEFL---------KALALPEDLIKMARDIKPIVEIQQKGDDFVVTSK 52
Query: 129 VTEMTH 134
T
Sbjct: 53 TPRQTV 58
>3p6d_A Fatty acid-binding protein, adipocyte; lipocalin, beta barrel,
lipid BI protein; HET: ZGB; 1.06A {Homo sapiens} PDB:
3p6c_A* 3p6e_A* 3p6f_A* 3p6g_A* 3p6h_A* 3rzy_A 2hnx_A*
3fr4_A* 2nnq_A* 1tow_A* 1tou_A* 3fr2_A* 3fr5_A* 1adl_A*
1alb_A 1lib_A 1lic_A* 1lid_A* 1lie_A* 1lif_A* ...
Length = 139
Score = 25.3 bits (55), Expect = 5.2
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 10/61 (16%)
Query: 75 EIQSDKNFDSFKRPVNFFLNKKAFGFNNFIR-VADVLDPGRGFLMEDDTFVIKTQVTEMT 133
++ S +NFD + K G R VA + P + D IK++ T
Sbjct: 17 KLVSSENFDDYM---------KEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN 67
Query: 134 H 134
Sbjct: 68 T 68
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 25.4 bits (55), Expect = 7.2
Identities = 12/81 (14%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 46 ENDDILDWPFVGRIRFTALNTSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIR 105
D ++++ + + + E+Q+ + + + + FF ++++ + F
Sbjct: 109 AADVLVEF-----LLDLIEDPVEIINSKLEVQAFERIEDQIKLIGFFKSEESEYYKAFEE 163
Query: 106 VADVLDPGRGFLMEDDTFVIK 126
A+ P F D V K
Sbjct: 164 AAEHFQPYIKFFATFDKGVAK 184
>2a0a_A DER F 13; beta barrel, helix, allergen; NMR {Dermatophagoides
farinae} SCOP: b.60.1.2
Length = 131
Score = 24.9 bits (54), Expect = 7.5
Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 10/68 (14%)
Query: 68 SEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIR-VADVLDPGRGFLMEDDTFVIK 126
+ +++ + FD F G ++ A L P +E+D ++ +
Sbjct: 2 ASIEGKYKLEKSEKFDEFL---------DKLGVGFMVKTAAKTLKPTFEVAIENDQYIFR 52
Query: 127 TQVTEMTH 134
+ T
Sbjct: 53 SLSTFKNT 60
>1b56_A Fatty acid binding protein; lipid-binding, fatty acid transport,
beta barrel, lipid binding protein; HET: PLM; 2.05A
{Homo sapiens} SCOP: b.60.1.2 PDB: 1jjj_A
Length = 135
Score = 24.5 bits (53), Expect = 8.8
Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 10/68 (14%)
Query: 68 SEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIR-VADVLDPGRGFLMEDDTFVIK 126
+ + K FD + K G +R + + P + IK
Sbjct: 5 QQLEGRWRLVDSKGFDEYM---------KELGVGIALRKMGAMAKPDCIITCDGKNLTIK 55
Query: 127 TQVTEMTH 134
T+ T T
Sbjct: 56 TESTLKTT 63
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.142 0.434
Gapped
Lambda K H
0.267 0.0558 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,063,653
Number of extensions: 110341
Number of successful extensions: 323
Number of sequences better than 10.0: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 33
Length of query: 134
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 51
Effective length of database: 4,384,350
Effective search space: 223601850
Effective search space used: 223601850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.2 bits)