RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy454
         (134 letters)



>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2
           (TRAF2) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 152

 Score = 71.3 bits (174), Expect = 2e-17
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 7/132 (5%)

Query: 1   MKEINRYFYSACFYSSCFGYRFCTRVNISREDAQ---YLSLFIHLVQGENDDILDWPFVG 57
           +       +S  FY+S +GY+ C R+ ++ +      +LSLF  +++G ND +L WPF  
Sbjct: 20  VAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 79

Query: 58  RIRFTALNTSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGFL 117
           ++    L+ ++   + D  + D    SF+RP        A G   F  V   ++    ++
Sbjct: 80  KVTLMLLDQNNREHVIDAFRPDVTSSSFQRP--VNDMNIASGCPLFCPV-SKMEAKNSYV 136

Query: 118 MEDDTFVIKTQV 129
             DD   IK  V
Sbjct: 137 -RDDAIFIKAIV 147


>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 155

 Score = 66.0 bits (160), Expect = 2e-15
 Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 11/137 (8%)

Query: 1   MKEINRYFYSACFYSSCFGYRFCTRVNI----SREDAQYLSLFIHLVQGENDDILDWPFV 56
            +E     +S  FY+   GY+ C R+++    ++  A Y+SLF+H +QGE D  L WPF 
Sbjct: 22  EEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ 81

Query: 57  GRIRFTALNTSSE---FSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPG 113
           G IR T L+ S      +  + + +     +F+RP     N K FG+  F+ +  +    
Sbjct: 82  GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRP-TIPRNPKGFGYVTFMHLEALRQ-- 138

Query: 114 RGFLMEDDTFVIKTQVT 130
           R F+  DDT +++ +V+
Sbjct: 139 RTFIK-DDTLLVRCEVS 154


>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3
           (TRAF3) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 155

 Score = 62.6 bits (151), Expect = 5e-14
 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 9/133 (6%)

Query: 1   MKEINRYFYSACFYSSCFGYRFCTRVNI---SREDAQYLSLFIHLVQGENDDILDWPFVG 57
           +       YS  FY+  FGY+ C RV +         +LSLF  +++GE D +L WPF  
Sbjct: 20  VMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 79

Query: 58  RIRFTALNTSS-EFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGF 116
           ++    ++  S    + D  + D N  SFK+         A G   F+    + +    +
Sbjct: 80  KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKK--PTGEMNIASGCPVFVAQTVLEN--GTY 135

Query: 117 LMEDDTFVIKTQV 129
           + +DDT  IK  V
Sbjct: 136 I-KDDTIFIKVIV 147


>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 146

 Score = 50.2 bits (119), Expect = 2e-09
 Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 20/134 (14%)

Query: 1   MKEINRYFYSACFYS-SCFGYRFCTRVNI---SREDAQYLSLFIHLVQGENDDILDWPFV 56
            +E+     S+ F S +    ++C RVN      E   YLSL++ LV             
Sbjct: 18  REEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPK-----SEVR 72

Query: 57  GRIRFTALNTSSEFSITDEIQSDKNFDSFKRPVNFFLNKKAFGFNNFIRVADVLDPGRGF 116
            + +F+ LN           + ++      +    F+  K +GF  FIR   +LD   G 
Sbjct: 73  AKFKFSILN----------AKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGL 122

Query: 117 LMEDDTFVIKTQVT 130
           L  DD   +  +V+
Sbjct: 123 L-PDDKLTLFCEVS 135


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.142    0.434 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 518,922
Number of extensions: 22843
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 15
Length of query: 134
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 58
Effective length of database: 1,364,116
Effective search space: 79118728
Effective search space used: 79118728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (22.8 bits)