Query psy4541
Match_columns 309
No_of_seqs 186 out of 819
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 19:45:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4541.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4541hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0093 RplN Ribosomal protein 100.0 3.2E-40 6.8E-45 276.9 10.7 107 185-309 1-122 (122)
2 CHL00057 rpl14 ribosomal prote 100.0 2.6E-39 5.6E-44 271.7 11.7 107 185-309 1-122 (122)
3 PRK05483 rplN 50S ribosomal pr 100.0 3.3E-39 7.1E-44 271.0 11.5 107 185-309 1-122 (122)
4 TIGR01067 rplN_bact ribosomal 100.0 4.4E-39 9.6E-44 270.0 11.3 107 185-309 1-122 (122)
5 PTZ00054 60S ribosomal protein 100.0 1.1E-38 2.4E-43 273.4 11.6 113 175-309 11-139 (139)
6 PRK08571 rpl14p 50S ribosomal 100.0 1.3E-38 2.9E-43 270.9 11.5 113 175-309 4-132 (132)
7 TIGR03673 rpl14p_arch 50S ribo 100.0 1.3E-38 2.9E-43 270.5 11.3 108 183-309 8-131 (131)
8 PF00238 Ribosomal_L14: Riboso 100.0 5.5E-38 1.2E-42 262.5 7.7 107 185-309 1-122 (122)
9 PTZ00320 ribosomal protein L14 100.0 6E-35 1.3E-39 259.5 11.7 105 187-309 61-188 (188)
10 KOG3441|consensus 100.0 5E-31 1.1E-35 224.5 8.7 129 175-309 21-149 (149)
11 KOG0901|consensus 100.0 2.3E-29 4.9E-34 217.3 9.7 124 160-309 1-145 (145)
12 KOG3441|consensus 99.9 3.2E-28 7E-33 207.4 5.6 99 6-107 3-102 (149)
13 CHL00057 rpl14 ribosomal prote 99.3 1E-12 2.2E-17 111.2 4.4 46 33-86 1-48 (122)
14 TIGR01067 rplN_bact ribosomal 99.3 1.8E-12 4E-17 109.5 4.3 46 33-86 1-48 (122)
15 PRK05483 rplN 50S ribosomal pr 99.3 2E-12 4.4E-17 109.3 4.4 46 33-86 1-48 (122)
16 PF00238 Ribosomal_L14: Riboso 99.2 5.6E-12 1.2E-16 106.1 2.4 42 33-82 1-44 (122)
17 TIGR03673 rpl14p_arch 50S ribo 99.2 1.5E-11 3.3E-16 105.3 4.4 48 31-86 8-61 (131)
18 PRK08571 rpl14p 50S ribosomal 99.1 3.4E-11 7.4E-16 103.3 4.2 46 33-86 11-62 (132)
19 PTZ00054 60S ribosomal protein 99.0 1.4E-10 3.1E-15 100.3 3.7 46 33-86 18-69 (139)
20 COG0093 RplN Ribosomal protein 98.9 1.7E-09 3.7E-14 91.9 3.6 46 33-86 1-48 (122)
21 PTZ00320 ribosomal protein L14 98.7 1.8E-08 3.8E-13 91.0 5.0 45 35-87 61-109 (188)
22 KOG0901|consensus 97.8 2E-05 4.4E-10 69.2 3.4 45 33-85 19-69 (145)
23 COG0197 RplP Ribosomal protein 76.6 3.3 7.2E-05 36.9 3.8 66 120-199 48-113 (146)
24 CHL00044 rpl16 ribosomal prote 74.7 4.9 0.00011 34.9 4.3 65 120-198 45-109 (135)
25 cd01433 Ribosomal_L16_L10e Rib 71.2 5.6 0.00012 32.8 3.7 67 120-199 23-89 (112)
26 TIGR00279 L10e ribosomal prote 58.9 7.6 0.00016 35.5 2.4 118 57-198 4-138 (172)
27 TIGR01164 rplP_bact ribosomal 56.7 16 0.00034 31.4 3.8 64 120-197 44-107 (126)
28 PRK09203 rplP 50S ribosomal pr 48.3 26 0.00057 30.5 3.9 64 120-197 45-108 (138)
29 PF00252 Ribosomal_L16: Riboso 44.0 13 0.00028 31.8 1.4 74 110-197 33-107 (133)
30 PRK04199 rpl10e 50S ribosomal 38.5 36 0.00079 31.1 3.4 105 70-198 24-138 (172)
31 KOG0171|consensus 26.6 84 0.0018 29.1 3.7 61 220-285 87-148 (176)
32 KOG2531|consensus 25.9 91 0.002 33.1 4.3 68 236-307 19-96 (545)
33 smart00333 TUDOR Tudor domain. 23.9 1.4E+02 0.0031 20.7 3.8 34 224-258 4-38 (57)
34 COG1465 Predicted alternative 22.7 3.2E+02 0.0069 27.9 7.1 60 212-271 266-343 (376)
35 PF02721 DUF223: Domain of unk 21.9 88 0.0019 24.6 2.7 28 261-292 2-29 (95)
36 cd04497 hPOT1_OB1_like hPOT1_O 20.1 1.7E+02 0.0037 24.7 4.2 34 37-79 38-77 (138)
No 1
>COG0093 RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-40 Score=276.88 Aligned_cols=107 Identities=32% Similarity=0.514 Sum_probs=102.3
Q ss_pred cccccCeEEEeeCCccccccccCCCCeEEEEEcC--CCceeeeCCEEEEEEc----------CeeeeEEEEeeeeccCC-
Q psy4541 185 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKHQKP- 251 (309)
Q Consensus 185 MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~--k~r~A~VGD~IvVSVK----------GeV~kAVIVRtKk~~~R- 251 (309)
|||.+|+|+|+||||| |+++||+|++ ++++|++||+|++||| |++++|||||||++++|
T Consensus 1 miq~~t~l~vADNSGA--------k~v~~I~V~gg~~r~~A~vGD~ivvsVKka~P~~~vKkg~V~~AViVRtkk~~rR~ 72 (122)
T COG0093 1 MIQVQTRLNVADNSGA--------KEVMCIKVLGGSRRRYAGVGDIIVVSVKKAIPRGMVKKGDVVKAVVVRTKKEVRRP 72 (122)
T ss_pred CcccccEEEEccCCCC--------cEEEEEEEeccccccccCCCCEEEEEEeeccCCcceeccceEEEEEEEeCCceEcC
Confidence 8999999999999998 9999999999 4669999999999998 78999999999999977
Q ss_pred --CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541 252 --HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI 309 (309)
Q Consensus 252 --~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I 309 (309)
++++|||||+||+|++|+|+||||||||++|+|++ +|+||+|||+.++
T Consensus 73 DGs~i~FddNA~Viin~~g~P~GtrI~GPVaRElr~~----------~~~kI~SlA~eVv 122 (122)
T COG0093 73 DGSYIKFDDNAAVIINPDGEPRGTRIFGPVARELRER----------GFMKIASLAPEVV 122 (122)
T ss_pred CCCEEEeCCceEEEECCCCCcccceEecchhHHHHhc----------CCceeeecceecC
Confidence 59999999999999999999999999999999999 9999999999875
No 2
>CHL00057 rpl14 ribosomal protein L14
Probab=100.00 E-value=2.6e-39 Score=271.75 Aligned_cols=107 Identities=32% Similarity=0.484 Sum_probs=101.7
Q ss_pred cccccCeEEEeeCCccccccccCCCCeEEEEEcC--CCceeeeCCEEEEEEc----------CeeeeEEEEeeeeccCC-
Q psy4541 185 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKHQKP- 251 (309)
Q Consensus 185 MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~--k~r~A~VGD~IvVSVK----------GeV~kAVIVRtKk~~~R- 251 (309)
|||.+|+|+|+||||| +.++||++|+ ++++|++||+|++||| ||+++|||||||++.+|
T Consensus 1 MIq~~t~l~v~DNSGa--------k~v~cI~v~~~~~~~~a~vGD~IvvsVk~~~~~~k~kkg~v~kAvIVrtk~~~~r~ 72 (122)
T CHL00057 1 MIQPQTYLNVADNSGA--------RKLMCIRVLGASNRKYAHIGDVIIAVVKEAVPNMPLKRSEVVRAVIVRTCKELKRD 72 (122)
T ss_pred CCCcCCEEEEeECCCC--------cEEEEEEEeCCCCCccccCCCEEEEEEEeccCCCceecCCEEEEEEEEeccccCcC
Confidence 8999999999999998 9999999998 4578999999999997 79999999999999976
Q ss_pred --CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541 252 --HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI 309 (309)
Q Consensus 252 --~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I 309 (309)
++++|||||+||+|++++|+||||+||||+|||++ +|+||+|||+.++
T Consensus 73 dG~~i~F~~Na~VLin~~~~p~GTrI~Gpv~~elr~k----------~~~Ki~sla~~vi 122 (122)
T CHL00057 73 NGMIIRFDDNAAVVIDQEGNPKGTRVFGPIARELREK----------NFTKIVSLAPEVL 122 (122)
T ss_pred CCcEEEcCCceEEEECCCCCEeEeEEEccchHHHhhc----------CCeEEEecccccC
Confidence 59999999999999999999999999999999988 8999999999875
No 3
>PRK05483 rplN 50S ribosomal protein L14; Validated
Probab=100.00 E-value=3.3e-39 Score=270.96 Aligned_cols=107 Identities=32% Similarity=0.525 Sum_probs=101.6
Q ss_pred cccccCeEEEeeCCccccccccCCCCeEEEEEcC--CCceeeeCCEEEEEEc----------CeeeeEEEEeeeeccCC-
Q psy4541 185 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKHQKP- 251 (309)
Q Consensus 185 MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~--k~r~A~VGD~IvVSVK----------GeV~kAVIVRtKk~~~R- 251 (309)
|||.+|+|+|+||||| +.++||++|+ ++++|++||+|+|||| |++++|||||||++++|
T Consensus 1 MIq~~t~l~v~DNSGa--------k~v~cI~v~g~~~~~~a~iGD~I~vsVkk~~~~~~~kkg~v~~AvIVrtkk~~~r~ 72 (122)
T PRK05483 1 MIQQETRLNVADNSGA--------KEVMCIKVLGGSKRRYASIGDVIVVSVKEAIPRGKVKKGDVVKAVVVRTKKGVRRP 72 (122)
T ss_pred CCCCCCEEEEeECCCC--------CEEEEEEEeCCCCCCccccCCEEEEEEEEcCCCCcccCCCEeeEEEEEeccceecC
Confidence 8999999999999998 9999999998 4578999999999998 89999999999999866
Q ss_pred --CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541 252 --HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI 309 (309)
Q Consensus 252 --~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I 309 (309)
++++|||||+||+|++++|+||||+||||+|||++ +|+||+|||+.++
T Consensus 73 dG~~i~F~dNavVLin~~~~p~GTrI~Gpv~~elr~~----------~~~Ki~sla~~v~ 122 (122)
T PRK05483 73 DGSYIRFDDNAAVLLNNDGEPRGTRIFGPVARELRDK----------KFMKIVSLAPEVL 122 (122)
T ss_pred CCCEEEcCCCEEEEECCCCCEeEeEEeccchHHHhhc----------CCcEEEecccccC
Confidence 59999999999999999999999999999999977 7999999999875
No 4
>TIGR01067 rplN_bact ribosomal protein L14, bacterial/organelle. This model distinguishes bacterial and most organellar examples of ribosomal protein L14 from all archaeal and eukaryotic forms.
Probab=100.00 E-value=4.4e-39 Score=270.04 Aligned_cols=107 Identities=33% Similarity=0.513 Sum_probs=101.7
Q ss_pred cccccCeEEEeeCCccccccccCCCCeEEEEEcC--CCceeeeCCEEEEEEc----------CeeeeEEEEeeeeccCC-
Q psy4541 185 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKHQKP- 251 (309)
Q Consensus 185 MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~--k~r~A~VGD~IvVSVK----------GeV~kAVIVRtKk~~~R- 251 (309)
|||.+|+|+|+||||| +.++||++|+ ++++|++||+|+|||| ||+++|||||||++++|
T Consensus 1 MIq~~t~l~v~DNSGa--------k~v~cI~v~~~~~~~~a~iGD~I~vsVk~~~~~~~~kkg~v~~AvIVrtkk~~~r~ 72 (122)
T TIGR01067 1 MIQQQSRLNVADNSGA--------KKVQCIKVLGGSRRRYATVGDVIVVVVKDAIPNGKVKKGDVVKAVIVRTKKGVRRK 72 (122)
T ss_pred CCCcCCEEEEeECCCC--------cEEEEEEEeCCCCCCccccCCEEEEEEEEcCCCCccccccEEEEEEEEeecceEeC
Confidence 8999999999999998 9999999997 4578999999999998 89999999999999866
Q ss_pred --CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541 252 --HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI 309 (309)
Q Consensus 252 --~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I 309 (309)
++++|||||+||+|++++|+||||+||||+|||++ +|+||+|||+.++
T Consensus 73 dG~~i~F~~Na~VLin~~~~p~GTrI~Gpv~~elr~~----------~~~Ki~sla~~i~ 122 (122)
T TIGR01067 73 DGSYIRFDDNACVLINKNKEPRGTRIFGPVARELRDK----------GFMKIVSLAPEVI 122 (122)
T ss_pred CCCEEECCCceEEEECCCCCEeeeEEEccchHHHhhc----------CCceeeeccchhC
Confidence 59999999999999999999999999999999988 8999999999875
No 5
>PTZ00054 60S ribosomal protein L23; Provisional
Probab=100.00 E-value=1.1e-38 Score=273.43 Aligned_cols=113 Identities=19% Similarity=0.269 Sum_probs=102.7
Q ss_pred cceeeccccccccccCeEEEeeCCccccccccCCCCeEEEEEcC----CC--ceeeeCCEEEEEEc-------CeeeeEE
Q psy4541 175 DLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN----QT--HIGTIGDKVLVAIK-------GEKKKGI 241 (309)
Q Consensus 175 ~~~s~s~~~~MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~----k~--r~A~VGD~IvVSVK-------GeV~kAV 241 (309)
-+++++ .|||.+|+|+|+||||| +.++||+|++ ++ ++|++||+|+|||| |++++||
T Consensus 11 ~~~~~~---~mIq~~t~L~vaDNSGA--------k~v~cI~vlg~~g~~~r~~~a~iGD~IvvsVKk~~p~~kg~V~kAV 79 (139)
T PTZ00054 11 NKFRVT---LGLPVGAVVNCADNSGA--------KNLYIIAVKGIHGRLNRLPSASLGDMVLATVKKGKPELRKKVLNAV 79 (139)
T ss_pred cccccc---eeecCCCEEEEeeCCCc--------cEEEEEEEeccCcCCccCcccccCCEEEEEEEECCCcccCCEeeEE
Confidence 345555 69999999999999998 9999999996 23 47999999999998 8999999
Q ss_pred EEeeeeccCC---CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541 242 IVGVKKHQKP---HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI 309 (309)
Q Consensus 242 IVRtKk~~~R---~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I 309 (309)
|||||++++| ++++|||||+||+|++++|+|||||||||+||++ +|+||+|||+.++
T Consensus 80 IVRtKk~~rR~dGs~i~F~dNA~VLin~~~~p~GTRI~GpV~rEl~~-----------~~~KI~SLA~~vi 139 (139)
T PTZ00054 80 IIRQRKAWRRKDGVFIYFEDNAGVIVNPKGEMKGSAITGPVAKECAD-----------LWPKISSAAPAIV 139 (139)
T ss_pred EEEECcceEcCCCcEEEeCCcEEEEECCCCCEeeeEEeCchhHHHHh-----------CccHhhccccccC
Confidence 9999999966 5999999999999999999999999999999944 5999999999875
No 6
>PRK08571 rpl14p 50S ribosomal protein L14P; Reviewed
Probab=100.00 E-value=1.3e-38 Score=270.88 Aligned_cols=113 Identities=24% Similarity=0.366 Sum_probs=102.6
Q ss_pred cceeeccccccccccCeEEEeeCCccccccccCCCCeEEEEEcC----CC--ceeeeCCEEEEEEc-------CeeeeEE
Q psy4541 175 DLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN----QT--HIGTIGDKVLVAIK-------GEKKKGI 241 (309)
Q Consensus 175 ~~~s~s~~~~MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~----k~--r~A~VGD~IvVSVK-------GeV~kAV 241 (309)
-+|+++ .|||.+|+|+|+||||| +.++||+|++ ++ ++|++||+|+|||| ||+++||
T Consensus 4 ~~~~~~---~mIq~~T~L~VaDNSGA--------k~v~cI~vlg~~g~~~r~~~a~iGD~IvvsVK~~~p~~kg~v~kAV 72 (132)
T PRK08571 4 IRSKVT---RGLPVGARLVCADNTGA--------KEVEIISVKGYKGVKRRLPKAGVGDMVVVSVKKGTPEMRKQVLRAV 72 (132)
T ss_pred cccccc---ceecCCCEEEEeeCCCC--------CeEEEEEEeccCCCCccCCccccCCEEEEEEEECCCcccCCEeEEE
Confidence 345665 69999999999999998 9999999986 23 46999999999998 7999999
Q ss_pred EEeeeeccCC---CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541 242 IVGVKKHQKP---HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI 309 (309)
Q Consensus 242 IVRtKk~~~R---~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I 309 (309)
|||||++++| ++++|||||+||+|++++|+||||+||||+||++ +|+||+|||+.++
T Consensus 73 IVRtkk~~~R~dGs~i~F~dNa~VLin~~~~p~GTRI~GpV~~El~~-----------~~~Ki~sLA~~vi 132 (132)
T PRK08571 73 VVRQRKEYRRPDGTRVKFEDNAAVIVTPEGTPKGTEIKGPVAREAAE-----------RWPKIASIASIIV 132 (132)
T ss_pred EEEeccceEcCCCcEEEeCCcEEEEECCCCCEeeeEEeccchHHHhh-----------CCchheeccchhC
Confidence 9999999976 5999999999999999999999999999999954 5999999999875
No 7
>TIGR03673 rpl14p_arch 50S ribosomal protein L14P. Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L24e, part of which may contact the 16S rRNA in 2 intersubunit bridges.
Probab=100.00 E-value=1.3e-38 Score=270.54 Aligned_cols=108 Identities=25% Similarity=0.374 Sum_probs=99.8
Q ss_pred cccccccCeEEEeeCCccccccccCCCCeEEEEEcC-----CC-ceeeeCCEEEEEEc-------CeeeeEEEEeeeecc
Q psy4541 183 LHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN-----QT-HIGTIGDKVLVAIK-------GEKKKGIIVGVKKHQ 249 (309)
Q Consensus 183 ~~MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~-----k~-r~A~VGD~IvVSVK-------GeV~kAVIVRtKk~~ 249 (309)
+.|||.+|+|+|+||||| +.++||+|++ ++ ++|++||+|+|||| ||+++|||||||++.
T Consensus 8 ~~mIq~~t~L~VaDNSGa--------k~v~cI~vl~~~g~~~r~~~a~iGD~IvvsVK~~~p~~kg~v~kAVIVRtkk~~ 79 (131)
T TIGR03673 8 TRALPVGSLLVCADNTGA--------KEVEVISVKGYKGVKRRLPCAGVGDMVVVSVKKGTPEMRKQVFKAVVVRQRKEY 79 (131)
T ss_pred ceeeccCCEEEEeeCCCC--------ceEEEEEEeeeCCCcccCCccccCCEEEEEEEECCccccCCEeEEEEEEeCcce
Confidence 369999999999999998 9999999993 23 57999999999998 899999999999999
Q ss_pred CC---CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541 250 KP---HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI 309 (309)
Q Consensus 250 ~R---~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I 309 (309)
+| ++++|||||+||+|++++|+|||||||||+||+ + +|+||+|||+.++
T Consensus 80 ~R~dGs~i~FddNa~VLin~~~~P~GTRI~GpV~rEl~-~----------~~~Ki~SlA~~vi 131 (131)
T TIGR03673 80 RRPDGTRVKFEDNAVVIVTPDGEPKGTEIKGPVAREAA-E----------RWPKIASIASIIV 131 (131)
T ss_pred ecCCCcEEEeCCcEEEEECCCCCEeeeEEEccchHHHH-h----------CccHheeccchhC
Confidence 76 599999999999999999999999999999994 4 5999999999875
No 8
>PF00238 Ribosomal_L14: Ribosomal protein L14p/L23e; InterPro: IPR000218 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L14 is one of the proteins from the large ribosomal subunit. In eubacteria, L14 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins, which have been grouped on the basis of sequence similarities []. Based on amino-acid sequence homology, it is predicted that ribosomal protein L14 is a member of a recently identified family of structurally related RNA-binding proteins []. L14 is a protein of 119 to 137 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZR_M 4A1C_J 4A1E_J 4A1A_J 4A17_J 1VSP_I 3D5D_O 1VSA_I 3MRZ_K 3F1F_O ....
Probab=100.00 E-value=5.5e-38 Score=262.50 Aligned_cols=107 Identities=36% Similarity=0.582 Sum_probs=99.2
Q ss_pred cccccCeEEEeeCCccccccccCCCCeEEEEEcC--CCceeeeCCEEEEEEc----------CeeeeEEEEeeeeccCC-
Q psy4541 185 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKHQKP- 251 (309)
Q Consensus 185 MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~--k~r~A~VGD~IvVSVK----------GeV~kAVIVRtKk~~~R- 251 (309)
|||.+|+|+|+||||| +.++||++|+ ++++|++||+|++||| |++++|||||||++++|
T Consensus 1 MIq~~t~L~v~DNSGa--------k~v~cI~v~~~~~~~~a~vGD~I~vsVkk~~~~~~vkkg~v~~avIVrtk~~~~r~ 72 (122)
T PF00238_consen 1 MIQKGTILKVADNSGA--------KKVKCIKVLGGKRRKYASVGDIIVVSVKKGRPKSKVKKGQVYKAVIVRTKKPIRRK 72 (122)
T ss_dssp -BETTEEEEESBSSSE--------EEEEEEEETSSTTTSEE-TTSEEEEEEEEE-SSSSSTTTEEEEEEEEECSSEEETT
T ss_pred CCCCCCEEEEeeCCCC--------cEEEEEEEeCCcCccccccceEEEEEEeecccCccccccceEEEEEEEEeEEEEEe
Confidence 9999999999999998 9999999997 4679999999999994 89999999999999755
Q ss_pred --CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541 252 --HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI 309 (309)
Q Consensus 252 --~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I 309 (309)
.+++|||||+||+|++++|+||||+||||+|+|++ +|+||+|||+.||
T Consensus 73 dg~~i~F~~Na~VLln~~~~p~GtrI~Gpv~~elr~~----------~~~ki~sla~~iv 122 (122)
T PF00238_consen 73 DGSFIKFDDNAVVLLNKKGNPLGTRIFGPVPRELRKK----------KFPKILSLASRIV 122 (122)
T ss_dssp TSEEEEESSEEEEEEETTSSBSSSSBCSEEEHHHHHT----------TSHHHHHHSSCEE
T ss_pred CCcEEEeCCccEEEEcCCCCEeeeEEEeeehHHhhHc----------CCchHHhhccccC
Confidence 59999999999999999999999999999999988 8999999999875
No 9
>PTZ00320 ribosomal protein L14; Provisional
Probab=100.00 E-value=6e-35 Score=259.54 Aligned_cols=105 Identities=20% Similarity=0.226 Sum_probs=99.6
Q ss_pred cccCeEEEeeCCccccccccCCCCeEEEEEcCCCceeeeCCE----EEEEEc----------------CeeeeEEEEeee
Q psy4541 187 KLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDK----VLVAIK----------------GEKKKGIIVGVK 246 (309)
Q Consensus 187 q~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~k~r~A~VGD~----IvVSVK----------------GeV~kAVIVRtK 246 (309)
.-+|+|+|+||||| |.++||+|+.++++|++||+ |+|||| |++++|||||||
T Consensus 61 ~~qT~L~VaDNSGA--------K~V~CIkVl~~rr~A~IGDi~~~~IvVsVKka~P~~~~~~~~kVKKG~V~kAVIVRTK 132 (188)
T PTZ00320 61 SDQVKLHCVDNTNC--------KHVRLISKATAERFAHCRVFPAVAHRVSVQRFKSGRGEVSRHRVKPGNIYWVCLLSRR 132 (188)
T ss_pred CCCcEEEEEeCCCC--------cEEEEEEEecCCCceeeccccCceEEEEEeecccCccccccCceecCCEEEEEEEEEC
Confidence 45799999999998 99999999987899999999 999997 799999999999
Q ss_pred eccCC---CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541 247 KHQKP---HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI 309 (309)
Q Consensus 247 k~~~R---~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I 309 (309)
++.+| ++++|||||+||+|++++|+||||||||++|||++ +|+||+|||+-|+
T Consensus 133 K~irR~DGs~IrFDdNAaVLIN~qgePlGTRIfGPVaRELR~k----------~f~KIvSLAp~~~ 188 (188)
T PTZ00320 133 QTNTRMSGLQTNFDRNTCILMNDQRVPLGTRVMYCAGRHVNHK----------YHLKAVVLANFFV 188 (188)
T ss_pred cccCCCCCCEEEeCCcEEEEECCCCCEeeeEEecchhHHHhhc----------CCceeeecccccC
Confidence 99977 59999999999999999999999999999999999 9999999999875
No 10
>KOG3441|consensus
Probab=99.97 E-value=5e-31 Score=224.55 Aligned_cols=129 Identities=49% Similarity=0.787 Sum_probs=122.9
Q ss_pred cceeeccccccccccCeEEEeeCCccccccccCCCCeEEEEEcCCCceeeeCCEEEEEEcCeeeeEEEEeeeeccCCCce
Q psy4541 175 DLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGIIVGVKKHQKPHIP 254 (309)
Q Consensus 175 ~~~s~s~~~~MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~k~r~A~VGD~IvVSVKGeV~kAVIVRtKk~~~R~~I 254 (309)
.-+++++++..|++.|+|+|+|||..|++|+..++.++||+||+++..+.+||.|+++||||+.+|+||......++..+
T Consensus 21 ~~lhtt~s~~~I~k~tRlrVVDNSaLGk~a~~~gr~PrCIHVYkkrgvg~~GDkiLvAIkGQmkKa~vVGh~~~~k~~~P 100 (149)
T KOG3441|consen 21 HCLHTTGSLMGIHKRTRLRVVDNSALGKEADTTGRLPRCIHVYKKRGVGELGDKILVAIKGQMKKAYVVGHVHYRKHGVP 100 (149)
T ss_pred hHhhcchHHHhhhhhheEEEecchhhcccccccCCCCceEEEEecccccccccEEEEEEecceeeeEEEEeeccCCCCCc
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541 255 KTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI 309 (309)
Q Consensus 255 kFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I 309 (309)
+||.|++||+|++|+|+||||.-|||..||.. +.+++|+|+++||+.||
T Consensus 101 ~fDsNniVLiddnGnPlGtRI~~PIPT~Lr~~------~~~~~ysKVLAiA~~fv 149 (149)
T KOG3441|consen 101 VFDSNNIVLIDDNGNPLGTRITAPIPTKLRAN------RGNVQYSKVLAIANKFV 149 (149)
T ss_pred ccCCCcEEEECCCCCcccceEeccCcHHHHhc------cCCcchhhHHHHHhhcC
Confidence 99999999999999999999999999999865 67999999999999986
No 11
>KOG0901|consensus
Probab=99.96 E-value=2.3e-29 Score=217.25 Aligned_cols=124 Identities=21% Similarity=0.344 Sum_probs=114.3
Q ss_pred ccccCCCCccccccccceeeccccccccccCeEEEeeCCccccccccCCCCeEEEEEcC-CC-----ceeeeCCEEEEEE
Q psy4541 160 EKKKGETPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN-QT-----HIGTIGDKVLVAI 233 (309)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~s~s~~~~MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~-k~-----r~A~VGD~IvVSV 233 (309)
|++++++++.+ .+||.| .|||.||.+||+||||| |+++||+|.+ ++ ..|++||+|+++|
T Consensus 1 ~~~~~~~gs~~----~k~r~s---~~~~~g~~incaDNSgA--------knL~~isv~g~~Grlnrl~~A~~GD~vva~v 65 (145)
T KOG0901|consen 1 MSSRGRGGSSG----VKFRIS---LGLPVGAVINCADNSGA--------KNLYCISVKGIKGRLNRLPAAGVGDMVVATV 65 (145)
T ss_pred CcccccCcccc----hhhhhh---hccccceEEEecCCCCc--------ceEEEEEEeccccccccccCCCcCCEEEEEE
Confidence 56788999988 899998 89999999999999998 9999999999 33 2799999999999
Q ss_pred c------------CeeeeEEEEeeeeccCC---CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCc
Q psy4541 234 K------------GEKKKGIIVGVKKHQKP---HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADY 298 (309)
Q Consensus 234 K------------GeV~kAVIVRtKk~~~R---~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~ 298 (309)
| |+++.|+|||++++.+| ++++|+|||+|++|++++|+||+|+||||+|++.. |
T Consensus 66 Kka~~~Pe~r~k~g~~~~avvVr~~k~~~r~dgs~~~f~dnA~v~~~~~~e~~gs~i~G~v~~e~~~~-----------~ 134 (145)
T KOG0901|consen 66 KKAHGKPELRKKVGEVLPAVVVRQKKSKRRKDGSIAYFEDNAGVIVNNKGEPKGSAITGPVGKELADL-----------W 134 (145)
T ss_pred ecccCCCccCcEecccceeeEEeeccccccCCCcEEEEcCceEEEEcccCccccceeccccChhHhhh-----------h
Confidence 8 57799999999999866 59999999999999999999999999999999998 9
Q ss_pred hheeccccCCC
Q psy4541 299 TKLLAIATTFI 309 (309)
Q Consensus 299 ~KIlSLA~~~I 309 (309)
+||+|+|+.++
T Consensus 135 ~kias~A~~i~ 145 (145)
T KOG0901|consen 135 PKIASLAGLVV 145 (145)
T ss_pred HHHHhhccccC
Confidence 99999998763
No 12
>KOG3441|consensus
Probab=99.94 E-value=3.2e-28 Score=207.42 Aligned_cols=99 Identities=35% Similarity=0.507 Sum_probs=86.2
Q ss_pred hHHHhhcccccccccc-ccccccccchHHHhhcceEEEEeCCcccccccccCCCceeEEEeccCCceeeCcEEEEEEcCc
Q psy4541 6 NVKSLLSRTPSALKLC-SDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGE 84 (309)
Q Consensus 6 ~~~~l~~~~~~~~~~~-~~~~~~~~~~~mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~~~~~g~vGD~IlvaIk~~ 84 (309)
.+..|.+|+.--..-+ +..+|||++|..|+++|||||||||+|||+||.+|++|+|||||+++++|++||+||||||||
T Consensus 3 ~~~~l~~p~t~~~~~~s~~~lhtt~s~~~I~k~tRlrVVDNSaLGk~a~~~gr~PrCIHVYkkrgvg~~GDkiLvAIkGQ 82 (149)
T KOG3441|consen 3 FFTGLWGPFTCVSRVLSHHCLHTTGSLMGIHKRTRLRVVDNSALGKEADTTGRLPRCIHVYKKRGVGELGDKILVAIKGQ 82 (149)
T ss_pred chhhcccceeeehhhhhhhHhhcchHHHhhhhhheEEEecchhhcccccccCCCCceEEEEecccccccccEEEEEEecc
Confidence 4567777776655433 445899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeccccccccccccccCcch
Q psy4541 85 KKKGETPSALKLCSDLYHTTPCL 107 (309)
Q Consensus 85 k~k~~~~~~~~~~~~~~~~~~~~ 107 (309)
++|||+|| +|..--|.+|-.
T Consensus 83 mkKa~vVG---h~~~~k~~~P~f 102 (149)
T KOG3441|consen 83 MKKAYVVG---HVHYRKHGVPVF 102 (149)
T ss_pred eeeeEEEE---eeccCCCCCccc
Confidence 99999999 566666666644
No 13
>CHL00057 rpl14 ribosomal protein L14
Probab=99.33 E-value=1e-12 Score=111.20 Aligned_cols=46 Identities=24% Similarity=0.332 Sum_probs=43.0
Q ss_pred HHhhcceEEEEeCCcccccccccCCCceeEEEec--cCCceeeCcEEEEEEcCccc
Q psy4541 33 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIKGEKK 86 (309)
Q Consensus 33 mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~--~~~~g~vGD~IlvaIk~~k~ 86 (309)
|||.+|+|+|+|||| |+.++|||||+ ++.+|.+||.|+|+||+.++
T Consensus 1 MIq~~t~l~v~DNSG--------ak~v~cI~v~~~~~~~~a~vGD~IvvsVk~~~~ 48 (122)
T CHL00057 1 MIQPQTYLNVADNSG--------ARKLMCIRVLGASNRKYAHIGDVIIAVVKEAVP 48 (122)
T ss_pred CCCcCCEEEEeECCC--------CcEEEEEEEeCCCCCccccCCCEEEEEEEeccC
Confidence 899999999999999 99999999997 45789999999999998776
No 14
>TIGR01067 rplN_bact ribosomal protein L14, bacterial/organelle. This model distinguishes bacterial and most organellar examples of ribosomal protein L14 from all archaeal and eukaryotic forms.
Probab=99.30 E-value=1.8e-12 Score=109.46 Aligned_cols=46 Identities=28% Similarity=0.448 Sum_probs=42.6
Q ss_pred HHhhcceEEEEeCCcccccccccCCCceeEEEec--cCCceeeCcEEEEEEcCccc
Q psy4541 33 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIKGEKK 86 (309)
Q Consensus 33 mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~--~~~~g~vGD~IlvaIk~~k~ 86 (309)
|||.+|+|+|+|||| ++.++||+||+ ++++|.+||.|+|+||+.++
T Consensus 1 MIq~~t~l~v~DNSG--------ak~v~cI~v~~~~~~~~a~iGD~I~vsVk~~~~ 48 (122)
T TIGR01067 1 MIQQQSRLNVADNSG--------AKKVQCIKVLGGSRRRYATVGDVIVVVVKDAIP 48 (122)
T ss_pred CCCcCCEEEEeECCC--------CcEEEEEEEeCCCCCCccccCCEEEEEEEEcCC
Confidence 899999999999999 99999999996 44789999999999997776
No 15
>PRK05483 rplN 50S ribosomal protein L14; Validated
Probab=99.29 E-value=2e-12 Score=109.26 Aligned_cols=46 Identities=30% Similarity=0.424 Sum_probs=42.9
Q ss_pred HHhhcceEEEEeCCcccccccccCCCceeEEEec--cCCceeeCcEEEEEEcCccc
Q psy4541 33 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIKGEKK 86 (309)
Q Consensus 33 mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~--~~~~g~vGD~IlvaIk~~k~ 86 (309)
|||.+|.|+|+|||| ++.++||+||+ +++.|.+||.|+|+||+.++
T Consensus 1 MIq~~t~l~v~DNSG--------ak~v~cI~v~g~~~~~~a~iGD~I~vsVkk~~~ 48 (122)
T PRK05483 1 MIQQETRLNVADNSG--------AKEVMCIKVLGGSKRRYASIGDVIVVSVKEAIP 48 (122)
T ss_pred CCCCCCEEEEeECCC--------CCEEEEEEEeCCCCCCccccCCEEEEEEEEcCC
Confidence 899999999999999 99999999997 45789999999999997777
No 16
>PF00238 Ribosomal_L14: Ribosomal protein L14p/L23e; InterPro: IPR000218 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L14 is one of the proteins from the large ribosomal subunit. In eubacteria, L14 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins, which have been grouped on the basis of sequence similarities []. Based on amino-acid sequence homology, it is predicted that ribosomal protein L14 is a member of a recently identified family of structurally related RNA-binding proteins []. L14 is a protein of 119 to 137 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZR_M 4A1C_J 4A1E_J 4A1A_J 4A17_J 1VSP_I 3D5D_O 1VSA_I 3MRZ_K 3F1F_O ....
Probab=99.20 E-value=5.6e-12 Score=106.06 Aligned_cols=42 Identities=29% Similarity=0.462 Sum_probs=37.7
Q ss_pred HHhhcceEEEEeCCcccccccccCCCceeEEEec--cCCceeeCcEEEEEEc
Q psy4541 33 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK 82 (309)
Q Consensus 33 mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~--~~~~g~vGD~IlvaIk 82 (309)
|||++|.|+|+|||| ++.++||+||+ +.++|++||.|+|+||
T Consensus 1 MIq~~t~L~v~DNSG--------ak~v~cI~v~~~~~~~~a~vGD~I~vsVk 44 (122)
T PF00238_consen 1 MIQKGTILKVADNSG--------AKKVKCIKVLGGKRRKYASVGDIIVVSVK 44 (122)
T ss_dssp -BETTEEEEESBSSS--------EEEEEEEEETSSTTTSEE-TTSEEEEEEE
T ss_pred CCCCCCEEEEeeCCC--------CcEEEEEEEeCCcCccccccceEEEEEEe
Confidence 899999999999999 99999999997 4679999999999993
No 17
>TIGR03673 rpl14p_arch 50S ribosomal protein L14P. Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L24e, part of which may contact the 16S rRNA in 2 intersubunit bridges.
Probab=99.19 E-value=1.5e-11 Score=105.33 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=42.2
Q ss_pred hHHHhhcceEEEEeCCcccccccccCCCceeEEEec-----cC-CceeeCcEEEEEEcCccc
Q psy4541 31 LHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN-----QT-HIGTIGDKVLVAIKGEKK 86 (309)
Q Consensus 31 ~~mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~-----~~-~~g~vGD~IlvaIk~~k~ 86 (309)
..|||.+|.|+|+|||| |+.++||+|++ ++ .+|.+||.|+|+||+.++
T Consensus 8 ~~mIq~~t~L~VaDNSG--------ak~v~cI~vl~~~g~~~r~~~a~iGD~IvvsVK~~~p 61 (131)
T TIGR03673 8 TRALPVGSLLVCADNTG--------AKEVEVISVKGYKGVKRRLPCAGVGDMVVVSVKKGTP 61 (131)
T ss_pred ceeeccCCEEEEeeCCC--------CceEEEEEEeeeCCCcccCCccccCCEEEEEEEECCc
Confidence 34999999999999999 99999999993 22 569999999999997666
No 18
>PRK08571 rpl14p 50S ribosomal protein L14P; Reviewed
Probab=99.14 E-value=3.4e-11 Score=103.33 Aligned_cols=46 Identities=24% Similarity=0.351 Sum_probs=41.7
Q ss_pred HHhhcceEEEEeCCcccccccccCCCceeEEEec----cC--CceeeCcEEEEEEcCccc
Q psy4541 33 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN----QT--HIGTIGDKVLVAIKGEKK 86 (309)
Q Consensus 33 mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~----~~--~~g~vGD~IlvaIk~~k~ 86 (309)
|||.+|+|+|+|||| |+.++||+|++ .+ .+|.+||.|+|+||+.++
T Consensus 11 mIq~~T~L~VaDNSG--------Ak~v~cI~vlg~~g~~~r~~~a~iGD~IvvsVK~~~p 62 (132)
T PRK08571 11 GLPVGARLVCADNTG--------AKEVEIISVKGYKGVKRRLPKAGVGDMVVVSVKKGTP 62 (132)
T ss_pred eecCCCEEEEeeCCC--------CCeEEEEEEeccCCCCccCCccccCCEEEEEEEECCC
Confidence 999999999999999 99999999985 22 469999999999998776
No 19
>PTZ00054 60S ribosomal protein L23; Provisional
Probab=99.03 E-value=1.4e-10 Score=100.35 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=42.3
Q ss_pred HHhhcceEEEEeCCcccccccccCCCceeEEEec----cC--CceeeCcEEEEEEcCccc
Q psy4541 33 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN----QT--HIGTIGDKVLVAIKGEKK 86 (309)
Q Consensus 33 mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~----~~--~~g~vGD~IlvaIk~~k~ 86 (309)
|||.+|+|+|+|||| |+.++||+||+ .+ .+|.+||.|+|+||..++
T Consensus 18 mIq~~t~L~vaDNSG--------Ak~v~cI~vlg~~g~~~r~~~a~iGD~IvvsVKk~~p 69 (139)
T PTZ00054 18 GLPVGAVVNCADNSG--------AKNLYIIAVKGIHGRLNRLPSASLGDMVLATVKKGKP 69 (139)
T ss_pred eecCCCEEEEeeCCC--------ccEEEEEEEeccCcCCccCcccccCCEEEEEEEECCC
Confidence 999999999999999 99999999995 23 479999999999999877
No 20
>COG0093 RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=1.7e-09 Score=91.93 Aligned_cols=46 Identities=28% Similarity=0.427 Sum_probs=43.0
Q ss_pred HHhhcceEEEEeCCcccccccccCCCceeEEEec--cCCceeeCcEEEEEEcCccc
Q psy4541 33 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIKGEKK 86 (309)
Q Consensus 33 mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~--~~~~g~vGD~IlvaIk~~k~ 86 (309)
|||.+|+|+|.|||| ||..+||.|++ .+.+|.+||.|+|+||.+.|
T Consensus 1 miq~~t~l~vADNSG--------Ak~v~~I~V~gg~~r~~A~vGD~ivvsVKka~P 48 (122)
T COG0093 1 MIQVQTRLNVADNSG--------AKEVMCIKVLGGSRRRYAGVGDIIVVSVKKAIP 48 (122)
T ss_pred CcccccEEEEccCCC--------CcEEEEEEEeccccccccCCCCEEEEEEeeccC
Confidence 799999999999999 99999999998 34599999999999999887
No 21
>PTZ00320 ribosomal protein L14; Provisional
Probab=98.69 E-value=1.8e-08 Score=90.99 Aligned_cols=45 Identities=20% Similarity=0.118 Sum_probs=42.7
Q ss_pred hhcceEEEEeCCcccccccccCCCceeEEEeccCCceeeCcE----EEEEEcCcccc
Q psy4541 35 KLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDK----VLVAIKGEKKK 87 (309)
Q Consensus 35 ~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~~~~~g~vGD~----IlvaIk~~k~k 87 (309)
..+|+|+|+|||| ||.++||+|+.++.+|.+||. |+|+||+.+++
T Consensus 61 ~~qT~L~VaDNSG--------AK~V~CIkVl~~rr~A~IGDi~~~~IvVsVKka~P~ 109 (188)
T PTZ00320 61 SDQVKLHCVDNTN--------CKHVRLISKATAERFAHCRVFPAVAHRVSVQRFKSG 109 (188)
T ss_pred CCCcEEEEEeCCC--------CcEEEEEEEecCCCceeeccccCceEEEEEeecccC
Confidence 4799999999999 999999999988899999999 99999999984
No 22
>KOG0901|consensus
Probab=97.76 E-value=2e-05 Score=69.17 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=41.8
Q ss_pred HHhhcceEEEEeCCcccccccccCCCceeEEEeccCC------ceeeCcEEEEEEcCcc
Q psy4541 33 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTH------IGTIGDKVLVAIKGEK 85 (309)
Q Consensus 33 mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~~~~------~g~vGD~IlvaIk~~k 85 (309)
||+..+.++|+|||| +|..+||.|.+.++ .|.+||.|+..||++.
T Consensus 19 ~~~~g~~incaDNSg--------AknL~~isv~g~~Grlnrl~~A~~GD~vva~vKka~ 69 (145)
T KOG0901|consen 19 GLPVGAVINCADNSG--------AKNLYCISVKGIKGRLNRLPAAGVGDMVVATVKKAH 69 (145)
T ss_pred ccccceEEEecCCCC--------cceEEEEEEeccccccccccCCCcCCEEEEEEeccc
Confidence 799999999999999 99999999999654 7999999999999965
No 23
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=76.56 E-value=3.3 Score=36.87 Aligned_cols=66 Identities=14% Similarity=0.037 Sum_probs=51.6
Q ss_pred ehhhhhhhhhhhCCCCeEEEeeeccceeeccceeEEEeecccccCCCCccccccccceeeccccccccccCeEEEeeCCc
Q psy4541 120 DNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCE 199 (309)
Q Consensus 120 ~~~e~~rq~~~~~~~~~~~~~~~~~~~g~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~s~s~~~~MIq~~T~LnVaDNSG 199 (309)
.++||||+||.+- =..++++|+-++|.+.-+..|.+.+|.+++-..-....-+++|..|.-++.-.
T Consensus 48 ~qiEAARia~~R~--------------lkr~g~~wIRvfP~~~~~~kp~e~Rmg~GkG~pegwaArVkpG~vlfei~g~~ 113 (146)
T COG0197 48 RQIEAARIAANRY--------------LKRGGGLWIRVFPDKPLTEKPGEDRMGKGKGKPEGWAARVKPGRVLFEIAGVP 113 (146)
T ss_pred HHHHHHHHHHHHH--------------hhhcCCEEEEEcCCceeeeCCCcccccCCCCCccEEEEEecCCcEEEEEecCc
Confidence 5799999999885 33556699999999999999999888888765555455688888887776543
No 24
>CHL00044 rpl16 ribosomal protein L16
Probab=74.67 E-value=4.9 Score=34.87 Aligned_cols=65 Identities=18% Similarity=0.152 Sum_probs=55.1
Q ss_pred ehhhhhhhhhhhCCCCeEEEeeeccceeeccceeEEEeecccccCCCCccccccccceeeccccccccccCeEEEeeCC
Q psy4541 120 DNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNC 198 (309)
Q Consensus 120 ~~~e~~rq~~~~~~~~~~~~~~~~~~~g~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~s~s~~~~MIq~~T~LnVaDNS 198 (309)
.+.|++|+++.+.- ..+.++|+-+++....+..|.+-+|+.++-++.....-|..|..|-=+++-
T Consensus 45 ~qiEaaR~~i~r~l--------------kk~~~i~irv~P~~pvtkkp~e~RMGkGKG~~~~~va~V~~G~ilfEi~g~ 109 (135)
T CHL00044 45 RQIEAGRRAITRYA--------------RRGGKIWIRIFPDKPVTMRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGV 109 (135)
T ss_pred HHHHHHHHHHHHhh--------------hcCcEEEEEECCCcceEeCcccccccCCCCCccEEEEEECCCcEEEEEeCC
Confidence 57999999999882 237899999999999999999999999998888777778888888777653
No 25
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=71.20 E-value=5.6 Score=32.84 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=56.4
Q ss_pred ehhhhhhhhhhhCCCCeEEEeeeccceeeccceeEEEeecccccCCCCccccccccceeeccccccccccCeEEEeeCCc
Q psy4541 120 DNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCE 199 (309)
Q Consensus 120 ~~~e~~rq~~~~~~~~~~~~~~~~~~~g~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~s~s~~~~MIq~~T~LnVaDNSG 199 (309)
.+.|++|+++.+.-. ..+.++|+-+++....+..|.+-+|+.++-++.....-+..|..|--+++..
T Consensus 23 ~~lEa~R~~i~r~l~-------------k~~~~~~ir~~p~~~vt~k~~~~rMGkGKG~~~~~~a~v~~G~iifEi~~~~ 89 (112)
T cd01433 23 EQLEAARIAINRYLK-------------KKGGKLWIRVFPDHPVTKKPLETRMGKGKGKPEGWVARVKPGQILFEVRGVP 89 (112)
T ss_pred HHHHHHHHHHHHHhh-------------hcCceEEEEecCCccEEECccccccCCCCCCccEEEEEECCCCEEEEEeCcC
Confidence 578999999998732 2278999999999999999988899999988887777788888888777765
No 26
>TIGR00279 L10e ribosomal protein L10.e. L10.e is distantly related to eubacterial ribosomal protein L16.
Probab=58.89 E-value=7.6 Score=35.45 Aligned_cols=118 Identities=16% Similarity=0.135 Sum_probs=74.0
Q ss_pred CCceeEEEeccCC-------ceeeCcEEEEEEcCcccceeccccccccccccccCcchhhhhhhheeeee-ehhhhhhhh
Q psy4541 57 KPPRVIAIYNQTH-------IGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHHIKLLTRLRVV-DNCEIGRQA 128 (309)
Q Consensus 57 k~~~CI~Vy~~~~-------~g~vGD~IlvaIk~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~rq~ 128 (309)
+|++|-+-.+..- .|..+-+|..---|.+.. .-||--|++.+..-++- .++||+|+|
T Consensus 4 rp~r~Yr~~~~~~Ytr~~y~~g~P~~kI~~f~~G~~~~---------------~fp~~~~L~a~E~~~I~~~qiEAaR~a 68 (172)
T TIGR00279 4 RPARCYRYQKNRPYTRSEYIKGVPGSKIRIYDMGNKSA---------------EFPVCVHLVAKEPEQIRHNALEAARIA 68 (172)
T ss_pred CchhhhcccCCCCCchhhccCCCCCCcEEEEECCCccC---------------CCCEEEEEEECccceecHHHHHHHHHH
Confidence 5666655443221 355566666555454411 24666677777776665 478999999
Q ss_pred hhhCCCCeEEEeeeccceeeccceeEEEeecccccCCCCccccccccc---------eeeccccccccccCeEEEeeCC
Q psy4541 129 MAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDL---------YHTTPCLHHIKLLTRLRVVDNC 198 (309)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~g~~g~~~~v~~~~~~~~~~~~~~~~~~~~~---------~s~s~~~~MIq~~T~LnVaDNS 198 (309)
+.+.- ....|+-+.++|+-++|...-+..|.+-+++.|. -.......-+.+|..|--+++-
T Consensus 69 ~~r~l---------kk~~g~~~~k~wIRvfP~~~lt~kp~~trmGaDRlq~GMr~gkG~p~~wvArVk~Gqiifei~~~ 138 (172)
T TIGR00279 69 ANKYM---------TRRAGRMGYHLKIRVYPHHILRENKMATGAGADRIQQGMRGAFGKPVGTAARVKIGQKIFSVWTK 138 (172)
T ss_pred HHHHH---------HhhcCccceEEEEEECCCCceecCchhhhcCchhhhcccccCCCCccEEEEEECcCCEEEEEEee
Confidence 97761 1223556679999999999888888877777633 3333333456667766666554
No 27
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle. This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10
Probab=56.67 E-value=16 Score=31.38 Aligned_cols=64 Identities=17% Similarity=0.100 Sum_probs=52.4
Q ss_pred ehhhhhhhhhhhCCCCeEEEeeeccceeeccceeEEEeecccccCCCCccccccccceeeccccccccccCeEEEeeC
Q psy4541 120 DNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHHIKLLTRLRVVDN 197 (309)
Q Consensus 120 ~~~e~~rq~~~~~~~~~~~~~~~~~~~g~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~s~s~~~~MIq~~T~LnVaDN 197 (309)
.+.|++|+++.+.- ..+..+|+-+++....++.|.+-+|+.++-++.....-+..|..|-=+++
T Consensus 44 ~qlEaaR~~i~r~l--------------~~~~~~~irv~P~~~vt~k~~~~RMGkGKG~~~~~varV~~G~ilfEi~~ 107 (126)
T TIGR01164 44 RQIEAARVAMTRYV--------------KRGGKLWIRIFPDKPYTKKPLETRMGKGKGNPEYWVAVVKPGKILFEIAG 107 (126)
T ss_pred HHHHHHHHHHHHHH--------------hhCceEEEEECCCcCEEeCchhccccCCCCCCCEEEEEECCCCEEEEEeC
Confidence 57899999998772 24578999999999999999988999998888776677888888776665
No 28
>PRK09203 rplP 50S ribosomal protein L16; Reviewed
Probab=48.25 E-value=26 Score=30.46 Aligned_cols=64 Identities=19% Similarity=0.149 Sum_probs=52.3
Q ss_pred ehhhhhhhhhhhCCCCeEEEeeeccceeeccceeEEEeecccccCCCCccccccccceeeccccccccccCeEEEeeC
Q psy4541 120 DNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHHIKLLTRLRVVDN 197 (309)
Q Consensus 120 ~~~e~~rq~~~~~~~~~~~~~~~~~~~g~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~s~s~~~~MIq~~T~LnVaDN 197 (309)
.+.|++|+++.+.- .. .+++|+-+++....+..|.+-+|+.++-++.....-+..|..|-=+++
T Consensus 45 ~qlEaaR~~i~r~L-------------kk-~g~~~irv~P~~~vt~k~~~~RMGkGKG~~~~~varVk~G~iifEi~~ 108 (138)
T PRK09203 45 RQIEAARIAMTRHI-------------KR-GGKVWIRIFPDKPVTKKPAEVRMGKGKGSPEYWVAVVKPGRILFEIAG 108 (138)
T ss_pred HHHHHHHHHHHHHh-------------hc-CceEEEEeCCCccEEcChhhccccCCCCCCcEEEEEECCCCEEEEEeC
Confidence 57899999998872 11 248999999999999999999999998888876777888888877766
No 29
>PF00252 Ribosomal_L16: Ribosomal protein L16p/L10e; InterPro: IPR016180 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a structural domain with an alpha/beta-hammerhead fold, where the beta-hammerhead motif is similar to that in barrel-sandwich hybrids. Domains of this structure can be found in ribosomal proteins L10e and L16. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 2ZJR_J 1Y69_K 3DLL_J 2ZJQ_J 2ZJP_J 3PIO_J 3CF5_J 3PIP_J 2ZKR_h 3J11_O ....
Probab=44.04 E-value=13 Score=31.84 Aligned_cols=74 Identities=12% Similarity=0.112 Sum_probs=55.7
Q ss_pred hhhhheeeee-ehhhhhhhhhhhCCCCeEEEeeeccceeeccceeEEEeecccccCCCCccccccccceeeccccccccc
Q psy4541 110 IKLLTRLRVV-DNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHHIKL 188 (309)
Q Consensus 110 ~~~~~~~~~~-~~~e~~rq~~~~~~~~~~~~~~~~~~~g~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~s~s~~~~MIq~ 188 (309)
|..++.-++- .+.|++|+++.+. +.. +++.|+-+++....+..|.+-+|+.++-++.....-+..
T Consensus 33 l~a~~~g~l~~~qlEa~R~~i~r~-------------lkk-~~~~~i~v~p~~~vTkk~~~~RMG~GKG~~~~~~a~V~~ 98 (133)
T PF00252_consen 33 LKALEPGRLTSNQLEAARIAINRY-------------LKK-NGKLWIRVFPHHPVTKKPLETRMGKGKGKIDHWVARVKP 98 (133)
T ss_dssp EEESS-EEEEHHHHHHHHHHHHHH-------------HHH-TSTEEESSSCEEEEEE-SSSSSSSSSSCEEEEEEEEEST
T ss_pred EEEeeeeeechhhhHHHHHHHHHH-------------hhh-heeEEEEeeeeeeeeeehhhhhhccCCCCccEEEEEECC
Confidence 4444444443 4789999999886 122 556999999999999999999999999888877777888
Q ss_pred cCeEEEeeC
Q psy4541 189 LTRLRVVDN 197 (309)
Q Consensus 189 ~T~LnVaDN 197 (309)
|..|-=+|+
T Consensus 99 G~iifEi~~ 107 (133)
T PF00252_consen 99 GQIIFEIGG 107 (133)
T ss_dssp TEEEEEEES
T ss_pred CcEEEEECC
Confidence 888877765
No 30
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed
Probab=38.51 E-value=36 Score=31.11 Aligned_cols=105 Identities=10% Similarity=0.035 Sum_probs=66.1
Q ss_pred ceeeCcEEEEEEcCcccceeccccccccccccccCcchhhhhhhheeeee-ehhhhhhhhhhhCCCCeEEEeeeccceee
Q psy4541 70 IGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHHIKLLTRLRVV-DNCEIGRQAMAEGKPPRVIAIYNQTHIGT 148 (309)
Q Consensus 70 ~g~vGD~IlvaIk~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~rq~~~~~~~~~~~~~~~~~~~g~ 148 (309)
.|-.+-+|..-.-|.++ +....|-- ++.++.-++- .++||+|+++.+.- ....|+
T Consensus 24 ~g~P~~kI~~f~~G~~~-----~~~~~~~~----------L~a~E~~~I~~~qiEAaR~ai~r~l---------kk~~G~ 79 (172)
T PRK04199 24 GGVPGPKIVKFDMGNLS-----GDFPVEVS----------LVVEEPCQIRHNALEAARIAANKYL---------TKTVGR 79 (172)
T ss_pred CCCCCCeEEEEecCCcC-----CCCCEEEE----------EEEcccccccHHHHHHHHHHHHHHH---------HhccCC
Confidence 45666777766666644 33344443 4444443432 47899999998761 112355
Q ss_pred ccceeEEEeecccccCCCCcccccc-----cc----ceeeccccccccccCeEEEeeCC
Q psy4541 149 IGDKVLVAIKGEKKKGETPSALKLC-----SD----LYHTTPCLHHIKLLTRLRVVDNC 198 (309)
Q Consensus 149 ~g~~~~v~~~~~~~~~~~~~~~~~~-----~~----~~s~s~~~~MIq~~T~LnVaDNS 198 (309)
-+-++|+-++|...-+..|.+-.++ ++ +-.......-+..|..|--+++.
T Consensus 80 ~~~k~wIrvfP~~~lt~kp~~~rmGAdRmg~GMr~akG~p~~wva~Vk~G~ilfei~~~ 138 (172)
T PRK04199 80 SNYHLKIRVYPHHVLRENKMATGAGADRVSDGMRLAFGKPVGTAARVEKGQKIFTVRVN 138 (172)
T ss_pred cccEEEEEeCCCcceecChhHhhcchhhhccCcccCCCCccEEEEEECcCCEEEEEEec
Confidence 5669999999988887777655333 44 44444444568888888888754
No 31
>KOG0171|consensus
Probab=26.60 E-value=84 Score=29.09 Aligned_cols=61 Identities=20% Similarity=0.167 Sum_probs=39.1
Q ss_pred CceeeeCCEEEEEEcCeeeeEEEEeeeeccCCCceeeCCceEEEECCC-CCccceEEecchhHHHHh
Q psy4541 220 THIGTIGDKVLVAIKGEKKKGIIVGVKKHQKPHIPKTDTNNVVLIDDS-GTPLGTRIHVPIPSMLRT 285 (309)
Q Consensus 220 ~r~A~VGD~IvVSVKGeV~kAVIVRtKk~~~R~~IkFddNAvVLLNkk-g~PlGTRI~GPVpkELR~ 285 (309)
|=.|.-||.|.+....-...+++ ++ ....++--++-+-+.-|+ ++-.-+|-+||+|..|-.
T Consensus 87 RIva~eGD~v~v~~~~~~~n~~~---e~--~~~~i~VP~GhVfv~GDN~~nS~DSr~yGplP~glI~ 148 (176)
T KOG0171|consen 87 RIVAMEGDLVEVHDGPLVVNDLV---EK--FSTPIRVPEGHVFVEGDNRNNSLDSRNYGPLPMGLIQ 148 (176)
T ss_pred eeeccCCceEEEecCCcccchhh---hh--ccceeeccCceEEEecCCCCCcccccccCCCchhhee
Confidence 33578888887777644444444 11 112345556666665544 779999999999998743
No 32
>KOG2531|consensus
Probab=25.94 E-value=91 Score=33.12 Aligned_cols=68 Identities=24% Similarity=0.393 Sum_probs=51.2
Q ss_pred eeeeEEEEeeeecc--------CCCceeeCCceEEEECCCCCccceEEecchhHHHH--hhhhhhcccCCCCchheeccc
Q psy4541 236 EKKKGIIVGVKKHQ--------KPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLR--TILKEKTLSKGADYTKLLAIA 305 (309)
Q Consensus 236 eV~kAVIVRtKk~~--------~R~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR--~k~~~~~~~~~~k~~KIlSLA 305 (309)
|-.||||+-+.-+. .+.-+.|..-+.|..|.. |-.|+-||.-++. +.|-+|.+..+.++.|+++++
T Consensus 19 QqlKaviids~LnVv~~~~V~Fd~DLpef~T~~GV~~~g~----~~~i~~PV~MWveAlDlll~kl~~~~~d~~kV~aiS 94 (545)
T KOG2531|consen 19 QQLKAVIIDSNLNVVHTEAVHFDTDLPEFGTKNGVYRNGG----GETITSPVLMWVEALDLLLDKLREAGFDLSKVMAIS 94 (545)
T ss_pred ceeEEEEEcCCccEEEEEEEeeccccccccccCceEeCCC----CcEEeccHHHHHHHHHHHHHHHHHcCCCHHHhhhhc
Confidence 55677777665544 344677888888887643 8899999988776 556778888999999999987
Q ss_pred cC
Q psy4541 306 TT 307 (309)
Q Consensus 306 ~~ 307 (309)
..
T Consensus 95 Ga 96 (545)
T KOG2531|consen 95 GA 96 (545)
T ss_pred cc
Confidence 53
No 33
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=23.88 E-value=1.4e+02 Score=20.72 Aligned_cols=34 Identities=24% Similarity=0.158 Sum_probs=26.6
Q ss_pred eeCCEEEEEE-cCeeeeEEEEeeeeccCCCceeeCC
Q psy4541 224 TIGDKVLVAI-KGEKKKGIIVGVKKHQKPHIPKTDT 258 (309)
Q Consensus 224 ~VGD~IvVSV-KGeV~kAVIVRtKk~~~R~~IkFdd 258 (309)
.+|+.+++-- .|..++|.|+..... ....+.|.|
T Consensus 4 ~~G~~~~a~~~d~~wyra~I~~~~~~-~~~~V~f~D 38 (57)
T smart00333 4 KVGDKVAARWEDGEWYRARIIKVDGE-QLYEVFFID 38 (57)
T ss_pred CCCCEEEEEeCCCCEEEEEEEEECCC-CEEEEEEEC
Confidence 4788888887 699999999988765 334677777
No 34
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=22.74 E-value=3.2e+02 Score=27.86 Aligned_cols=60 Identities=23% Similarity=0.391 Sum_probs=43.4
Q ss_pred EEEEEcC-CCce---eeeCCEEEEEEc-CeeeeEEEEeeeeccCCC-------------ceeeCCceEEEECCCCCcc
Q psy4541 212 RVIAIYN-QTHI---GTIGDKVLVAIK-GEKKKGIIVGVKKHQKPH-------------IPKTDTNNVVLIDDSGTPL 271 (309)
Q Consensus 212 ~CI~V~~-k~r~---A~VGD~IvVSVK-GeV~kAVIVRtKk~~~R~-------------~IkFddNAvVLLNkkg~Pl 271 (309)
..|.+.+ +.+| -+.||.|+++=. |....|+|=|.|-+.+.. .+-=+-..+=|++++|+|.
T Consensus 266 aYi~vPg~kTkYLaEL~aGDeV~iVD~dGr~R~aiVGRvKIErRPl~lIeAey~g~~i~tiLQNAETIkLv~~dG~pv 343 (376)
T COG1465 266 AYIRVPGGKTKYLAELKAGDEVLIVDFDGRTRSAIVGRVKIERRPLMLIEAEYEGVEISTILQNAETIKLVNPDGEPV 343 (376)
T ss_pred EEEEcCCCceEEhhhhcCCCeEEEEecCCceeEEEEEEEEeecCceEEEEEEecCcEEEEEeccceeEEEEcCCCcEe
Confidence 3467766 5666 578999998776 999999999999887642 2333334456788899876
No 35
>PF02721 DUF223: Domain of unknown function DUF223; InterPro: IPR003871 The function of this domain has not been characterised, but may be involved in nucleic acid or nucleotide binding.
Probab=21.89 E-value=88 Score=24.62 Aligned_cols=28 Identities=32% Similarity=0.578 Sum_probs=21.8
Q ss_pred EEEECCCCCccceEEecchhHHHHhhhhhhcc
Q psy4541 261 VVLIDDSGTPLGTRIHVPIPSMLRTILKEKTL 292 (309)
Q Consensus 261 vVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~ 292 (309)
.||+|++| ++|.+-||+++-.+++..+.
T Consensus 2 mvL~De~G----~~I~A~I~~~~~~~f~~~l~ 29 (95)
T PF02721_consen 2 MVLVDEKG----DKIQATIPKELVDKFKDSLK 29 (95)
T ss_pred EEEEecCC----CEEEEEECHHHHHHHHhhcc
Confidence 47888776 89999999998887555444
No 36
>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP). POT1 proteins recognize single-stranded (ss) 3-prime ends of the telomere. A 3-prime ss overhang is conserved in ciliated protozoa, yeast, and mammals. SpPOT1 is essential for telomere maintenance. It binds specifically to the ss G-rich telomeric sequence (GGTTAC) of S. pombe. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. Deletion of the S. pombe pot1+ gene results in a rapid loss of telomere sequences, chromosome mis-segregation and chromosome circularization. hPOT1 is implicated in telomere length regulation. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB
Probab=20.12 E-value=1.7e+02 Score=24.73 Aligned_cols=34 Identities=15% Similarity=0.347 Sum_probs=24.9
Q ss_pred cceEEEEeCCcccccccccC-CCceeEEEeccC-----CceeeCcEEEE
Q psy4541 37 LTRLRVVDNCEIGRQAMAEG-KPPRVIAIYNQT-----HIGTIGDKVLV 79 (309)
Q Consensus 37 ~TrL~VvDNSglg~~~~~~~-k~~~CI~Vy~~~-----~~g~vGD~Ilv 79 (309)
...|+++|-|. + -..-++++|++. .+ .+||.|++
T Consensus 38 ~~tl~i~D~S~--------~~~~~l~v~~F~~~~~~LP~v-~~GDVIll 77 (138)
T cd04497 38 CCTLTITDPSL--------ANSDGLTVKLFRPNEESLPIV-KVGDIILL 77 (138)
T ss_pred EEEEEEECCCC--------CCCCcEEEEEECCChhhCCCC-CCCCEEEE
Confidence 45699999998 3 346778899855 24 88998864
Done!