Query psy4541
Match_columns 309
No_of_seqs 186 out of 819
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 19:45:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4541.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4541hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j21_J 50S ribosomal protein L 100.0 3.1E-43 1.1E-47 300.8 8.3 125 160-309 1-141 (141)
2 3v2d_O 50S ribosomal protein L 100.0 1.1E-41 3.8E-46 285.3 9.1 107 185-309 1-122 (122)
3 1whi_A Ribosomal protein L14; 100.0 1.9E-41 6.4E-46 283.8 8.7 107 185-309 1-122 (122)
4 3u5e_V L17A, YL32, 60S ribosom 100.0 4.2E-41 1.4E-45 286.5 10.2 120 164-309 2-137 (137)
5 3bbo_M Ribosomal protein L14; 100.0 4.5E-41 1.5E-45 281.2 7.2 106 185-309 1-121 (121)
6 1vq8_K 50S ribosomal protein L 100.0 1.3E-40 4.5E-45 282.0 9.6 113 175-309 4-132 (132)
7 3r8s_K 50S ribosomal protein L 100.0 5.3E-41 1.8E-45 281.1 7.0 106 185-308 1-122 (122)
8 3v2d_O 50S ribosomal protein L 99.3 1.5E-12 5.2E-17 109.1 2.7 47 33-87 1-49 (122)
9 3r8s_K 50S ribosomal protein L 99.2 1.6E-12 5.4E-17 109.0 2.3 47 33-87 1-49 (122)
10 1whi_A Ribosomal protein L14; 99.2 1.9E-12 6.7E-17 108.4 2.4 46 33-86 1-48 (122)
11 3bbo_M Ribosomal protein L14; 99.2 1.9E-12 6.6E-17 108.4 2.0 47 33-87 1-49 (121)
12 3j21_J 50S ribosomal protein L 99.2 6.5E-12 2.2E-16 107.6 2.0 50 29-86 16-71 (141)
13 1vq8_K 50S ribosomal protein L 99.1 1.1E-11 3.8E-16 105.2 2.2 48 31-86 9-62 (132)
14 3u5e_V L17A, YL32, 60S ribosom 99.0 7.5E-11 2.6E-15 100.7 2.6 47 33-87 16-68 (137)
15 2ftc_I Mitochondrial ribosomal 80.6 2.1 7.1E-05 35.2 4.8 66 120-197 30-95 (118)
16 3bbo_O Ribosomal protein L16; 79.6 1.5 5.1E-05 36.9 3.7 74 110-197 34-108 (135)
17 3r8s_M 50S ribosomal protein L 77.4 2.1 7.3E-05 36.1 4.0 65 120-198 44-108 (136)
18 2zjr_J 50S ribosomal protein L 69.4 1.5 5.3E-05 37.2 1.3 74 110-197 35-109 (142)
19 1ffk_F Ribosomal protein L10E; 59.0 7.4 0.00025 33.7 3.6 84 105-198 43-127 (157)
20 1vq8_H 50S ribosomal protein L 45.3 8.2 0.00028 33.9 1.7 96 88-199 30-140 (171)
21 2zkr_h 60S ribosomal protein L 37.1 18 0.00062 32.8 2.6 101 87-199 32-142 (214)
22 2eqj_A Metal-response element- 36.0 38 0.0013 25.7 3.8 44 222-265 13-57 (66)
23 2qqr_A JMJC domain-containing 35.8 36 0.0012 28.1 4.0 40 222-262 5-45 (118)
24 4a17_H RPL10, 60S ribosomal pr 35.2 13 0.00046 33.7 1.5 50 105-167 47-101 (215)
25 3j21_N 50S ribosomal protein L 31.8 18 0.00061 32.1 1.6 81 104-197 43-137 (181)
26 4hcz_A PHD finger protein 1; p 29.7 55 0.0019 24.3 3.7 41 224-264 5-46 (58)
27 2pa2_A 60S ribosomal protein L 28.5 23 0.00078 30.5 1.7 85 105-198 16-110 (151)
28 3j0l_J Ribosomal protein L10; 23.0 14 0.00047 33.8 -0.7 50 105-167 45-99 (219)
No 1
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.1e-43 Score=300.81 Aligned_cols=125 Identities=22% Similarity=0.325 Sum_probs=108.0
Q ss_pred ccccCCCCccccccccceeeccccccccccCeEEEeeCCccccccccCCCCeEEEEEcCC----Cc--eeeeCCEEEEEE
Q psy4541 160 EKKKGETPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQ----TH--IGTIGDKVLVAI 233 (309)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~s~s~~~~MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~k----~r--~A~VGD~IvVSV 233 (309)
|+|+|++++++ ..+|+++ .|||.+|+|+|+||||| ++++||+|++. ++ +|++||+|++||
T Consensus 1 ~~~~~~~~~~~---~~~~~~~---~mIq~~t~L~VaDNSGA--------k~v~cI~Vlg~kg~~~r~~~A~iGD~IvvsV 66 (141)
T 3j21_J 1 MAKKGAGATRG---VSAVRPT---RALPVGAYLTVADNSGA--------KVIQIIGVVEYHGTRRRLASAGVGDMVVATV 66 (141)
T ss_dssp ---------CC---CCCSBCC---CCBCTTCEEEECSSSSE--------EEEEEEEETTCCCCTTCCCCBCSSCEEEEEE
T ss_pred CCccccCCccc---ccccccc---ceeccCCEEEEccCCCC--------cEEEEEEEcCCCCcccccccCCcCCEEEEEE
Confidence 68999999887 4688887 89999999999999998 99999999982 34 499999999999
Q ss_pred c-------CeeeeEEEEeeeeccCC---CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheec
Q psy4541 234 K-------GEKKKGIIVGVKKHQKP---HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLA 303 (309)
Q Consensus 234 K-------GeV~kAVIVRtKk~~~R---~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlS 303 (309)
| ||+++|||||||++++| ++++|||||+||||++++|+|||||||||+|||++ |+||+|
T Consensus 67 Kk~~p~~kg~V~kAVIVRtkk~~rR~dGs~i~FddNA~VLin~~g~p~GTRI~GPVarElr~~-----------~~KI~S 135 (141)
T 3j21_J 67 KKGRPDMRHQVVRAVIIRQRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPVAREAAER-----------WVRIGS 135 (141)
T ss_dssp EEECTTTTTCEEEEEEEECSSCEECTTSCEECCSSCEEEEBCTTSCBCSSCCCSEECHHHHHH-----------CHHHHH
T ss_pred EecCCCCcCceEEEEEEEeCCccCCCCCcEEEcCCcEEEEECCCCCEeeeEEEccccHHHHhh-----------chHHhh
Confidence 8 89999999999999976 59999999999999999999999999999999998 999999
Q ss_pred cccCCC
Q psy4541 304 IATTFI 309 (309)
Q Consensus 304 LA~~~I 309 (309)
||+.++
T Consensus 136 lA~~iv 141 (141)
T 3j21_J 136 IASIIV 141 (141)
T ss_dssp HCSEEC
T ss_pred cccccC
Confidence 999875
No 2
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=100.00 E-value=1.1e-41 Score=285.26 Aligned_cols=107 Identities=28% Similarity=0.457 Sum_probs=102.6
Q ss_pred cccccCeEEEeeCCccccccccCCCCeEEEEEcC--CCceeeeCCEEEEEEc----------CeeeeEEEEeeeeccCC-
Q psy4541 185 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKHQKP- 251 (309)
Q Consensus 185 MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~--k~r~A~VGD~IvVSVK----------GeV~kAVIVRtKk~~~R- 251 (309)
|||.+|+|+|+||||| +.++||+|++ ++++|++||+|++||| ||+++|||||||++++|
T Consensus 1 MIq~~t~L~vaDNSGA--------k~v~cI~Vlg~~~rr~a~iGD~IvvsVK~~~p~~~vKkg~v~~AVIVRtkk~~rR~ 72 (122)
T 3v2d_O 1 MIQPQTYLEVADNTGA--------RKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRP 72 (122)
T ss_dssp CBCTTCEEEECBSSSE--------EEEEEEEEESTTTCCCBCTTCEEEEEEEEECSSSSSCTTCEEEEEEEECSSCEECT
T ss_pred CCCCCCEEEEeeCCCC--------cEEEEEEEeCCCCCcccCCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCccCCC
Confidence 9999999999999998 9999999999 4779999999999998 89999999999999976
Q ss_pred --CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541 252 --HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI 309 (309)
Q Consensus 252 --~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I 309 (309)
++++|||||+||+|++|+|+|||||||||+|||++ +|+||+|||++++
T Consensus 73 dG~~i~FddNa~Vlin~~~~p~GTrI~GpVarElr~~----------~~~KI~SlA~~v~ 122 (122)
T 3v2d_O 73 DGSAIRFDDNAAVIINNQLEPRGTRVFGPVARELREK----------GFMKIVSLAPEVL 122 (122)
T ss_dssp TSCEEEESSCEEEEECTTSCBSSSCBCSCBCTHHHHT----------TCHHHHHHSSCBC
T ss_pred CCcEEEcCCcEEEEECCCCCEeeeEEEccchHHHhhC----------CCchhhccccccC
Confidence 59999999999999999999999999999999999 9999999999875
No 3
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=100.00 E-value=1.9e-41 Score=283.77 Aligned_cols=107 Identities=32% Similarity=0.510 Sum_probs=102.7
Q ss_pred cccccCeEEEeeCCccccccccCCCCeEEEEEcC--CCceeeeCCEEEEEEc----------CeeeeEEEEeeeeccCC-
Q psy4541 185 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKHQKP- 251 (309)
Q Consensus 185 MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~--k~r~A~VGD~IvVSVK----------GeV~kAVIVRtKk~~~R- 251 (309)
|||.+|+|+|+||||| +.++||+|++ ++++|++||+|++||| ||+++|||||||++++|
T Consensus 1 MIq~~t~l~vaDNSGA--------k~v~cI~vlgg~~~r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~ 72 (122)
T 1whi_A 1 MIQQESRLKVADNSGA--------REVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRP 72 (122)
T ss_dssp CBCTTCEEEECBSSSE--------EEEEEEEECSSTTCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECT
T ss_pred CCCccCEEEEeECCCC--------cEEEEEEEcCCCcccccccCeEEEEEEEEecCCCccccccEEEEEEEEecCceecC
Confidence 9999999999999998 9999999999 4789999999999998 89999999999999976
Q ss_pred --CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541 252 --HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI 309 (309)
Q Consensus 252 --~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I 309 (309)
++++|||||+||+|++|+|+|||||||||+|||++ +|+||+|||+.++
T Consensus 73 dG~~i~FddNa~Vlin~~g~p~GTrI~GPVarElr~k----------~~~KI~SlA~~vl 122 (122)
T 1whi_A 73 DGSYIRFDENACVIIRDDKSPRGTRIFGPVARELRDK----------DFMKIISLAPEVI 122 (122)
T ss_dssp TSCEECCSSCEEEEECTTSCBSSSCBCSCBCTHHHHT----------TCHHHHHHCSCBC
T ss_pred CCCEEEeCCceEEEECCCCCEeeeEEEccchHHHhhc----------CCcchhhcccccC
Confidence 59999999999999999999999999999999998 8999999999875
No 4
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=100.00 E-value=4.2e-41 Score=286.54 Aligned_cols=120 Identities=14% Similarity=0.210 Sum_probs=111.0
Q ss_pred CCCCccccccccceeeccccccccccCeEEEeeCCccccccccCCCCeEEEEEcC-CC-----ceeeeCCEEEEEEc---
Q psy4541 164 GETPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN-QT-----HIGTIGDKVLVAIK--- 234 (309)
Q Consensus 164 ~~~~~~~~~~~~~~s~s~~~~MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~-k~-----r~A~VGD~IvVSVK--- 234 (309)
+++++++ .+|+++ .+||.+|+|+|+||||| +.++||+|++ ++ ++|++||+|++|||
T Consensus 2 ~~~~~~~----~~~~~~---~gl~~~t~L~VaDNSGA--------k~v~cI~Vlg~~~r~~r~~~A~iGD~IvvsVK~~~ 66 (137)
T 3u5e_V 2 SGNGAQG----TKFRIS---LGLPVGAIMNCADNSGA--------RNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGK 66 (137)
T ss_dssp CCSSCCS----CCCCCC---CCEETTCEEEECBSSSB--------CEEEEEEETTCCCCTTCCCEECTTCEEEEECSSBC
T ss_pred CccccCc----ceeeec---ccccCCCEEEEeeCCCC--------cEEEEEEEeCCCCcccccccCCcCCEEEEEEEECC
Confidence 3667777 788997 79999999999999998 9999999999 32 38999999999998
Q ss_pred ----CeeeeEEEEeeeeccCC---CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccC
Q psy4541 235 ----GEKKKGIIVGVKKHQKP---HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATT 307 (309)
Q Consensus 235 ----GeV~kAVIVRtKk~~~R---~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~ 307 (309)
||+++|||||||++++| ++++|||||+||+|++++|+|||||||||+|||++ |+||+|||++
T Consensus 67 p~~k~~V~~AVIVRtkk~~rR~dG~~i~FddNA~Vlin~~g~p~GTrI~GPVarElr~~-----------~~KI~SlA~~ 135 (137)
T 3u5e_V 67 PELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADL-----------WPRVASNSGV 135 (137)
T ss_dssp TTTTTSCEEEEEEECCSCEECTTSCEEEESSCEEEEBCTTCCBSSSCBCSCBCHHHHTT-----------CHHHHHTCSS
T ss_pred CCCCCcEEEEEEEEeccccCcCCCeEEEcCCceEEEECCCCCEeeeEEEcchhHHHHHH-----------hhHHHhcccc
Confidence 89999999999999976 59999999999999999999999999999999987 9999999998
Q ss_pred CC
Q psy4541 308 FI 309 (309)
Q Consensus 308 ~I 309 (309)
++
T Consensus 136 vv 137 (137)
T 3u5e_V 136 VV 137 (137)
T ss_dssp BC
T ss_pred cC
Confidence 75
No 5
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=4.5e-41 Score=281.24 Aligned_cols=106 Identities=32% Similarity=0.465 Sum_probs=101.6
Q ss_pred cccccCeEEEeeCCccccccccCCCCeEEEEEcC--CCceeeeCCEEEEEEc----------CeeeeEEEEeeeeccCC-
Q psy4541 185 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKHQKP- 251 (309)
Q Consensus 185 MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~--k~r~A~VGD~IvVSVK----------GeV~kAVIVRtKk~~~R- 251 (309)
|||.+|+|+|+||||| +.++||+|++ ++++|++||+|++||| ||+++|||||||++++|
T Consensus 1 MIq~~t~l~vaDNSGA--------k~v~cI~Vlgg~~~r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~ 72 (121)
T 3bbo_M 1 MIQPQTHLNVADNSGA--------RELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRAVVVRTCKELKRD 72 (121)
T ss_dssp CCCSSCEEEECSSSSE--------EEEEEEEECSSSCCCCCCTTCEEEEEEEEECSSSSSCSSCEEEEEEEECSSCEECT
T ss_pred CCCccCEEEEeeCCCC--------cEEEEEEEcCCCCccccccCcEEEEEEEEccCCCccccCcEEEEEEEEecCccccC
Confidence 9999999999999998 9999999999 4789999999999998 89999999999999976
Q ss_pred --CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541 252 --HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI 309 (309)
Q Consensus 252 --~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I 309 (309)
++++|||||+||+|++|+|+|||||||||+|||++ |+||+|||+.++
T Consensus 73 dG~~i~FddNa~Vlin~~g~p~GTrI~GPVarElr~~-----------~~KI~SlA~~vl 121 (121)
T 3bbo_M 73 NGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQK-----------FAKIVSLAPEVL 121 (121)
T ss_dssp TSCEECCSSCEEEECCTTSSCSSSCCCSCCCGGGTTT-----------CHHHHHHSSCCC
T ss_pred CCCEEEeCCceEEEECCCCCEeEeEEEcCcCHHHHhc-----------chHhhhccchhC
Confidence 59999999999999999999999999999999997 999999999875
No 6
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=100.00 E-value=1.3e-40 Score=281.95 Aligned_cols=113 Identities=19% Similarity=0.323 Sum_probs=105.7
Q ss_pred cceeeccccccccccCeEEEeeCCccccccccCCCCeEEEEEcC----CCce--eeeCCEEEEEEc-------CeeeeEE
Q psy4541 175 DLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN----QTHI--GTIGDKVLVAIK-------GEKKKGI 241 (309)
Q Consensus 175 ~~~s~s~~~~MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~----k~r~--A~VGD~IvVSVK-------GeV~kAV 241 (309)
.+|+++ .|||.+|+|+|+||||| +.++||+|++ ++++ |++||+|++||| ||+++||
T Consensus 4 ~~~~~~---~mIq~~t~l~vaDNSGA--------k~v~cI~V~g~~g~~~r~p~a~iGD~IvvsVKk~~p~~kg~v~~AV 72 (132)
T 1vq8_K 4 LGADVT---QGLEKGSLITCADNTGA--------RELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEMRRQVLEAV 72 (132)
T ss_dssp CSSEEC---CCEETTCEEEECBSSSE--------EEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTTTTTCEEEEE
T ss_pred cccccc---cccccCCEEEEeeCCCC--------cEEEEEEEeCccCcccccCCCccCcEEEEEEEecCCCCCCcEEEEE
Confidence 567887 89999999999999998 9999999998 3567 999999999995 9999999
Q ss_pred EEeeeeccCC---CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541 242 IVGVKKHQKP---HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI 309 (309)
Q Consensus 242 IVRtKk~~~R---~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I 309 (309)
|||||++++| ++++|||||+||+|++|+|+|||||||||+|||+. |+||+|||+.++
T Consensus 73 IVRtkk~~rR~dG~~i~FddNA~Vlin~~g~p~GTrI~GPVarElr~~-----------~~KI~SlA~~v~ 132 (132)
T 1vq8_K 73 VVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQR-----------FGSVASAATMIV 132 (132)
T ss_dssp EEECSSCEECTTSCEEEESSCEEEEECTTSCBSSSCBCSEECHHHHHH-----------SHHHHTTCSEEC
T ss_pred EEEcCCCcCcCCCcEEEeCCceEEEECCCCCEeEEEEEcCcCHHHHhc-----------ccHhhhcccccC
Confidence 9999999976 59999999999999999999999999999999998 999999999875
No 7
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=100.00 E-value=5.3e-41 Score=281.11 Aligned_cols=106 Identities=28% Similarity=0.479 Sum_probs=101.3
Q ss_pred cccccCeEEEeeCCccccccccCCCCeEEEEEcC--CCceeeeCCEEEEEEc----------CeeeeEEEEeeeeccCC-
Q psy4541 185 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKHQKP- 251 (309)
Q Consensus 185 MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~--k~r~A~VGD~IvVSVK----------GeV~kAVIVRtKk~~~R- 251 (309)
|||.+|+|+|+||||| +.++||+|++ ++++|++||+|++||| ||+++|||||||++++|
T Consensus 1 MIq~~t~L~vaDNSGA--------k~v~cI~Vlgg~~r~~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~ 72 (122)
T 3r8s_K 1 MIQEQTMLNVADNSGA--------RRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRP 72 (122)
T ss_dssp CBCTTCEEEECBTTSE--------EEEEEEEECSSSSCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECT
T ss_pred CCCCCCEEEEccCCCC--------ceEEEEEEeCCCCCCcccCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCcCCCC
Confidence 9999999999999998 9999999999 4679999999999998 89999999999999976
Q ss_pred --CceeeCCceEEEECCC-CCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCC
Q psy4541 252 --HIPKTDTNNVVLIDDS-GTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTF 308 (309)
Q Consensus 252 --~~IkFddNAvVLLNkk-g~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~ 308 (309)
++++|||||+||+|++ |+|+|||||||||+|||++ +|+||+|||+.+
T Consensus 73 dG~~i~FddNa~Vlin~~~g~p~GTrI~GpVarElR~~----------~~~KI~SlA~~v 122 (122)
T 3r8s_K 73 DGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSE----------KFMKIISLAPEV 122 (122)
T ss_dssp TSCEEEESSCEEEEEETTTEEESCSCBCSCCCGGGGSG----------GGHHHHHSSSCC
T ss_pred CCcEEEcCCceEEEEeCCCCCEeeeEEEccccHHHhHc----------CCchhhccccCC
Confidence 5999999999999999 9999999999999999988 899999999874
No 8
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=99.25 E-value=1.5e-12 Score=109.13 Aligned_cols=47 Identities=23% Similarity=0.345 Sum_probs=43.1
Q ss_pred HHhhcceEEEEeCCcccccccccCCCceeEEEecc--CCceeeCcEEEEEEcCcccc
Q psy4541 33 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQ--THIGTIGDKVLVAIKGEKKK 87 (309)
Q Consensus 33 mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~~--~~~g~vGD~IlvaIk~~k~k 87 (309)
|||.+|+|+|+|||| |+.++||+||+. +++|.+||.|+++||.++|.
T Consensus 1 MIq~~t~L~vaDNSG--------Ak~v~cI~Vlg~~~rr~a~iGD~IvvsVK~~~p~ 49 (122)
T 3v2d_O 1 MIQPQTYLEVADNTG--------ARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPR 49 (122)
T ss_dssp CBCTTCEEEECBSSS--------EEEEEEEEEESTTTCCCBCTTCEEEEEEEEECSS
T ss_pred CCCCCCEEEEeeCCC--------CcEEEEEEEeCCCCCcccCCCCEEEEEEEEcCCC
Confidence 899999999999999 999999999994 57999999999999966554
No 9
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=99.24 E-value=1.6e-12 Score=109.04 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=42.8
Q ss_pred HHhhcceEEEEeCCcccccccccCCCceeEEEecc--CCceeeCcEEEEEEcCcccc
Q psy4541 33 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQ--THIGTIGDKVLVAIKGEKKK 87 (309)
Q Consensus 33 mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~~--~~~g~vGD~IlvaIk~~k~k 87 (309)
|||.+|+|+|+|||| |+.++||+||+. +++|.+||.|+|+||..+|.
T Consensus 1 MIq~~t~L~vaDNSG--------Ak~v~cI~Vlgg~~r~~a~iGD~IvvsVK~~~p~ 49 (122)
T 3r8s_K 1 MIQEQTMLNVADNSG--------ARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPR 49 (122)
T ss_dssp CBCTTCEEEECBTTS--------EEEEEEEEECSSSSCCCBCTTCEEEEEEEEECTT
T ss_pred CCCCCCEEEEccCCC--------CceEEEEEEeCCCCCCcccCCCEEEEEEEEcCCC
Confidence 899999999999999 999999999984 57899999999999966554
No 10
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=99.23 E-value=1.9e-12 Score=108.44 Aligned_cols=46 Identities=28% Similarity=0.424 Sum_probs=42.8
Q ss_pred HHhhcceEEEEeCCcccccccccCCCceeEEEecc--CCceeeCcEEEEEEcCccc
Q psy4541 33 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQ--THIGTIGDKVLVAIKGEKK 86 (309)
Q Consensus 33 mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~~--~~~g~vGD~IlvaIk~~k~ 86 (309)
|||.+|+|+|+|||| |+.++||+||+. +++|.+||.|+|+||..+|
T Consensus 1 MIq~~t~l~vaDNSG--------Ak~v~cI~vlgg~~~r~a~iGD~IvvsVK~~~p 48 (122)
T 1whi_A 1 MIQQESRLKVADNSG--------AREVLVIKVLGGSGRRYANIGDVVVATVKDATP 48 (122)
T ss_dssp CBCTTCEEEECBSSS--------EEEEEEEEECSSTTCCCBCTTCEEEEEEEEECT
T ss_pred CCCccCEEEEeECCC--------CcEEEEEEEcCCCcccccccCeEEEEEEEEecC
Confidence 899999999999999 999999999994 6899999999999996665
No 11
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.23 E-value=1.9e-12 Score=108.36 Aligned_cols=47 Identities=28% Similarity=0.340 Sum_probs=43.3
Q ss_pred HHhhcceEEEEeCCcccccccccCCCceeEEEecc--CCceeeCcEEEEEEcCcccc
Q psy4541 33 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQ--THIGTIGDKVLVAIKGEKKK 87 (309)
Q Consensus 33 mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~~--~~~g~vGD~IlvaIk~~k~k 87 (309)
|||.+|+|+|+|||| |+.++||+||+. +++|.+||.|+++||+.+|.
T Consensus 1 MIq~~t~l~vaDNSG--------Ak~v~cI~Vlgg~~~r~a~iGD~IvvsVK~~~p~ 49 (121)
T 3bbo_M 1 MIQPQTHLNVADNSG--------ARELMCIRIIGASNRRYARIGDVIVAVIKEAIPN 49 (121)
T ss_dssp CCCSSCEEEECSSSS--------EEEEEEEEECSSSCCCCCCTTCEEEEEEEEECSS
T ss_pred CCCccCEEEEeeCCC--------CcEEEEEEEcCCCCccccccCcEEEEEEEEccCC
Confidence 899999999999999 999999999994 68999999999999976663
No 12
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.16 E-value=6.5e-12 Score=107.64 Aligned_cols=50 Identities=20% Similarity=0.261 Sum_probs=43.3
Q ss_pred cchHHHhhcceEEEEeCCcccccccccCCCceeEEEeccCC------ceeeCcEEEEEEcCccc
Q psy4541 29 PCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTH------IGTIGDKVLVAIKGEKK 86 (309)
Q Consensus 29 ~~~~mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~~~~------~g~vGD~IlvaIk~~k~ 86 (309)
-...|||.+|+|+|+|||| |+.++||+||+.++ +|.+||.|+|+||+++|
T Consensus 16 ~~~~mIq~~t~L~VaDNSG--------Ak~v~cI~Vlg~kg~~~r~~~A~iGD~IvvsVKk~~p 71 (141)
T 3j21_J 16 RPTRALPVGAYLTVADNSG--------AKVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRP 71 (141)
T ss_dssp BCCCCBCTTCEEEECSSSS--------EEEEEEEEETTCCCCTTCCCCBCSSCEEEEEEEEECT
T ss_pred cccceeccCCEEEEccCCC--------CcEEEEEEEcCCCCcccccccCCcCCEEEEEEEecCC
Confidence 3445999999999999999 99999999998433 59999999999996555
No 13
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=99.13 E-value=1.1e-11 Score=105.18 Aligned_cols=48 Identities=17% Similarity=0.308 Sum_probs=42.2
Q ss_pred hHHHhhcceEEEEeCCcccccccccCCCceeEEEecc----CCc--eeeCcEEEEEEcCccc
Q psy4541 31 LHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQ----THI--GTIGDKVLVAIKGEKK 86 (309)
Q Consensus 31 ~~mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~~----~~~--g~vGD~IlvaIk~~k~ 86 (309)
..|||.+|+|+|+|||| |+.++||+||+. +++ |.+||.|+|+||+.++
T Consensus 9 ~~mIq~~t~l~vaDNSG--------Ak~v~cI~V~g~~g~~~r~p~a~iGD~IvvsVKk~~p 62 (132)
T 1vq8_K 9 TQGLEKGSLITCADNTG--------ARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTP 62 (132)
T ss_dssp CCCEETTCEEEECBSSS--------EEEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECT
T ss_pred ccccccCCEEEEeeCCC--------CcEEEEEEEeCccCcccccCCCccCcEEEEEEEecCC
Confidence 34999999999999999 999999999983 346 9999999999965555
No 14
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=99.02 E-value=7.5e-11 Score=100.69 Aligned_cols=47 Identities=19% Similarity=0.310 Sum_probs=42.4
Q ss_pred HHhhcceEEEEeCCcccccccccCCCceeEEEeccC------CceeeCcEEEEEEcCcccc
Q psy4541 33 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQT------HIGTIGDKVLVAIKGEKKK 87 (309)
Q Consensus 33 mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~~~------~~g~vGD~IlvaIk~~k~k 87 (309)
+||.+|+|+|+|||| |+.++||+||+.+ .+|.+||.|+|+||+.+|.
T Consensus 16 gl~~~t~L~VaDNSG--------Ak~v~cI~Vlg~~~r~~r~~~A~iGD~IvvsVK~~~p~ 68 (137)
T 3u5e_V 16 GLPVGAIMNCADNSG--------ARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPE 68 (137)
T ss_dssp CEETTCEEEECBSSS--------BCEEEEEEETTCCCCTTCCCEECTTCEEEEECSSBCTT
T ss_pred cccCCCEEEEeeCCC--------CcEEEEEEEeCCCCcccccccCCcCCEEEEEEEECCCC
Confidence 689999999999999 9999999999943 2799999999999977765
No 15
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=80.63 E-value=2.1 Score=35.22 Aligned_cols=66 Identities=8% Similarity=-0.059 Sum_probs=53.0
Q ss_pred ehhhhhhhhhhhCCCCeEEEeeeccceeeccceeEEEeecccccCCCCccccccccceeeccccccccccCeEEEeeC
Q psy4541 120 DNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHHIKLLTRLRVVDN 197 (309)
Q Consensus 120 ~~~e~~rq~~~~~~~~~~~~~~~~~~~g~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~s~s~~~~MIq~~T~LnVaDN 197 (309)
.++|++|+|+.+.-.+ ..+.++|+-++|.......|.+-+|++++-+......-+..|..|.=+++
T Consensus 30 ~qiEaaR~ai~r~l~~------------k~~~~~wirv~P~~pvt~k~~e~RMG~GKG~~~~wva~Vk~G~ilfEi~g 95 (118)
T 2ftc_I 30 GHFEMMRLTINRSMDP------------KNMFAIWRVPAPFKPITRKSVGHRMGGGKGAIDHYVTPVKAGRLVVEMGG 95 (118)
T ss_pred HHHHHHHHHHHheeec------------cCCeEEEEEECCCcccCcCchhcccccCCCCccEEEEEECCCCEEEEEec
Confidence 5789999999988321 25789999999999999999988898877777655566888888877766
No 16
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=79.56 E-value=1.5 Score=36.92 Aligned_cols=74 Identities=20% Similarity=0.201 Sum_probs=59.1
Q ss_pred hhhhheeeee-ehhhhhhhhhhhCCCCeEEEeeeccceeeccceeEEEeecccccCCCCccccccccceeeccccccccc
Q psy4541 110 IKLLTRLRVV-DNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHHIKL 188 (309)
Q Consensus 110 ~~~~~~~~~~-~~~e~~rq~~~~~~~~~~~~~~~~~~~g~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~s~s~~~~MIq~ 188 (309)
++.++.-++- .++|++|.|+.+.- ..+.++|+.++|.......|.+-+|++++-+......-+..
T Consensus 34 L~a~e~~~it~~qiEaaR~ai~R~l--------------k~~~k~wirv~P~~pvt~k~~e~RMG~GKG~~~~wva~Vk~ 99 (135)
T 3bbo_O 34 LQALEPAWITSRQIEAGRRAMTRNA--------------RRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKP 99 (135)
T ss_dssp EEESSCCCCCHHHHHHHHHHHHHTT--------------CSSSCCCCCCCCCSCCCCCCSSCCSSCCCSCSSCCCCCCCT
T ss_pred EEECcCCccCHHHHHHHHHHHHHHh--------------hhCcEEEEEeCCCcccEeccccccccccCCCceEEEEEECC
Confidence 3334433333 47899999999983 36899999999999999999999999998777766677889
Q ss_pred cCeEEEeeC
Q psy4541 189 LTRLRVVDN 197 (309)
Q Consensus 189 ~T~LnVaDN 197 (309)
|..|.=+++
T Consensus 100 G~ilfEi~g 108 (135)
T 3bbo_O 100 GRILYEISG 108 (135)
T ss_dssp TCEEEEECS
T ss_pred CCEEEEEec
Confidence 998888776
No 17
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=77.42 E-value=2.1 Score=36.09 Aligned_cols=65 Identities=18% Similarity=0.160 Sum_probs=54.8
Q ss_pred ehhhhhhhhhhhCCCCeEEEeeeccceeeccceeEEEeecccccCCCCccccccccceeeccccccccccCeEEEeeCC
Q psy4541 120 DNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNC 198 (309)
Q Consensus 120 ~~~e~~rq~~~~~~~~~~~~~~~~~~~g~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~s~s~~~~MIq~~T~LnVaDNS 198 (309)
.++|++|.|+.+.-. .++++|+-++|....+..|.+-+|++++-++.....-+..|..|.=+++.
T Consensus 44 ~qiEaaR~ai~R~lk--------------r~gk~wirv~P~~pvt~k~~etRMGkGKG~~~~wva~Vk~G~ilfEi~g~ 108 (136)
T 3r8s_M 44 RQIEAARRAMTRAVK--------------RQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDGV 108 (136)
T ss_dssp HHHHHHHHHHHHTTC--------------SCSEEEECCCCCEEEEECCSSCCSCSSCCEEEEEEEEECTTCEEEEEESS
T ss_pred HHHHHHHHHHHHhhh--------------cCcEEEEEECCCCceEeCchhccCCCCCCCCCEEEEEECCCCEEEEEeCC
Confidence 579999999999832 36689999999999999999989999998888777778888888877764
No 18
>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J 1nkw_K 3cf5_J* 3dll_J* 3pio_J* 1njm_K* 1nwx_K* 1njp_K* 1xbp_K* 1y69_K 1nwy_K* 3pip_J* 1pnu_K 1pny_K 1vor_N 1vou_N 1vow_N 1voy_N ...
Probab=69.42 E-value=1.5 Score=37.17 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=56.5
Q ss_pred hhhhheeeee-ehhhhhhhhhhhCCCCeEEEeeeccceeeccceeEEEeecccccCCCCccccccccceeeccccccccc
Q psy4541 110 IKLLTRLRVV-DNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHHIKL 188 (309)
Q Consensus 110 ~~~~~~~~~~-~~~e~~rq~~~~~~~~~~~~~~~~~~~g~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~s~s~~~~MIq~ 188 (309)
++.+..-++- .++|++|.|+.+.- ..+.++|+-++|....+..|.+-+|++++-+......-+..
T Consensus 35 L~a~e~~~it~~qiEAaR~ai~R~l--------------kr~gk~wirv~P~~pvt~Kp~e~RMG~GKG~~~~wva~Vk~ 100 (142)
T 2zjr_J 35 LIAMEPAWIKSNQIEACRIVMSRHF--------------RRGGKIYIRIFPDKPVTKKPAETRMGKGKGAVEYWVSVVKP 100 (142)
T ss_dssp EEECSCBCCBHHHHHHHHHHHHHHC--------------SSCCCCCCCCCCCCEECCCSSSCCCSSSCCTTSEEBCCBCT
T ss_pred EEECcCCeECHHHHHHHHHHHHHHh--------------hhCcEEEEEeCCCcceEcCcccccccccCCCCCEEEEEECC
Confidence 3334433332 47899999999872 23789999999999999999999998877766655666888
Q ss_pred cCeEEEeeC
Q psy4541 189 LTRLRVVDN 197 (309)
Q Consensus 189 ~T~LnVaDN 197 (309)
|..|.=+++
T Consensus 101 G~ilfEi~g 109 (142)
T 2zjr_J 101 GRVMFEVAG 109 (142)
T ss_dssp TEEEECCCS
T ss_pred CCEEEEEeC
Confidence 888877766
No 19
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ...
Probab=59.02 E-value=7.4 Score=33.74 Aligned_cols=84 Identities=7% Similarity=-0.132 Sum_probs=57.1
Q ss_pred cchhhhhhhheeeee-ehhhhhhhhhhhCCCCeEEEeeeccceeeccceeEEEeecccccCCCCccccccccceeecccc
Q psy4541 105 PCLHHIKLLTRLRVV-DNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCL 183 (309)
Q Consensus 105 ~~~~~~~~~~~~~~~-~~~e~~rq~~~~~~~~~~~~~~~~~~~g~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~s~s~~~ 183 (309)
|+--|++.++.-++- .++||||.||.+.-- ...|.-+-++|+-++|-+.-+..| +-+|.+++-......
T Consensus 43 p~~~~L~a~E~~~Its~qIEAaRia~nR~lk---------r~~Gk~~fklwIRifP~~~it~kp-etrMg~gkG~p~~wv 112 (157)
T 1ffk_F 43 PAQVENVVEKPVQIRHNALEAARNAANRFVQ---------NSGAAANYKFRIRKFPFHVIREQD-GDGMRAPFGKSVGTA 112 (157)
T ss_pred CEEEEEEECccccCCHHHHHHHHHHHHHHHH---------hhcCCcccEEEEEECCCeeeEecc-cccccCCCCCccEEE
Confidence 333344444444433 578999999998611 122444559999999988887777 666888887776666
Q ss_pred ccccccCeEEEeeCC
Q psy4541 184 HHIKLLTRLRVVDNC 198 (309)
Q Consensus 184 ~MIq~~T~LnVaDNS 198 (309)
.-+..|..|.-++.-
T Consensus 113 ArVk~G~ilfei~gv 127 (157)
T 1ffk_F 113 ARSHGANHDFIAWVN 127 (157)
T ss_pred EEEcCCCEEEEEecc
Confidence 678888888777653
No 20
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ...
Probab=45.29 E-value=8.2 Score=33.94 Aligned_cols=96 Identities=5% Similarity=-0.105 Sum_probs=59.3
Q ss_pred eeccccccccccccccCcchhhhhhhheeeee-ehhhhhhhhhhhCCCCeEEEeeeccceeeccce-----eEEEeeccc
Q psy4541 88 GETPSALKLCSDLYHTTPCLHHIKLLTRLRVV-DNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDK-----VLVAIKGEK 161 (309)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~rq~~~~~~~~~~~~~~~~~~~g~~g~~-----~~v~~~~~~ 161 (309)
-|-.|-.+.-.|- -|+--|++.++.-++- .++||+|.|+.+. +-..+++ +|+-++|-+
T Consensus 30 ~fd~G~~~~~~~~---fp~~~~L~a~E~~~Its~qIEAaRia~~R~-------------lkk~~Gk~~~f~iwIRifP~~ 93 (171)
T 1vq8_H 30 QHKMGRKQKDADD---YPVQISLIVEETVQLRHGSLEASRLSANRH-------------LIKELGEEGDYKMTLRKFPHQ 93 (171)
T ss_dssp CSBCSCTTSCSTT---CSEEEEEEESSCEEEEHHHHHHHHHHHHHH-------------HHHHHCTTCSCEEEECCCCCE
T ss_pred EEecCCCcCCccc---CCEEEEEEECcccccCHHHHHHHHHHHHHH-------------hHHhcCCCCCcEEEEEEcCCe
Confidence 4555555554443 3555566777666664 4789999999876 2223556 999888876
Q ss_pred cc------CCCCcc---ccccccceeeccccccccccCeEEEeeCCc
Q psy4541 162 KK------GETPSA---LKLCSDLYHTTPCLHHIKLLTRLRVVDNCE 199 (309)
Q Consensus 162 ~~------~~~~~~---~~~~~~~~s~s~~~~MIq~~T~LnVaDNSG 199 (309)
.- ...|.. -.|.+++-.......-+..|..|.-++...
T Consensus 94 ~ir~nkm~T~kgAdRlq~rMg~gkG~p~~wvArVk~G~ilfei~~~~ 140 (171)
T 1vq8_H 94 VLRENKQATGAGADRVSDGMRAAFGKIVGTAARVQAGEQLFTAYCNV 140 (171)
T ss_dssp EEEECC-----------CCSTTCCCEEEEEEEEECTTCEEEEEEECT
T ss_pred eEeccccccccchhhhhccccccCCCCcEEEEEECCCCEEEEEECcC
Confidence 64 444444 455566666665556688888888887633
No 21
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=37.12 E-value=18 Score=32.85 Aligned_cols=101 Identities=9% Similarity=-0.054 Sum_probs=63.9
Q ss_pred ceeccccccccccccccCcchhhhhhhheeeee-ehhhhhhhhhhhCCCCeEEEeeeccceeeccceeEEEeecccccC-
Q psy4541 87 KGETPSALKLCSDLYHTTPCLHHIKLLTRLRVV-DNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKG- 164 (309)
Q Consensus 87 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~rq~~~~~~~~~~~~~~~~~~~g~~g~~~~v~~~~~~~~~- 164 (309)
.-|-.|-.+.-.|- -|+-.|++.++.-++- .++||||.|+.+.- ....|.-+.++|+-++|-+.-+
T Consensus 32 ~~fd~G~~~a~~~~---fp~~~gL~a~E~~~Its~qIEAARia~nR~l---------kr~~Gk~~fklwIRifP~~~it~ 99 (214)
T 2zkr_h 32 RIFDLGRKKAKVDE---FPLCGHMVSDEYEQLSSEALEAARICANKYM---------VKSCGKDGFHIRVRLHPFHVIRI 99 (214)
T ss_dssp CSSCEECSSSCSTT---CSEEEEEEESSCEEEEHHHHHHHHHHHHHHH---------HHHHCTTCCEEEECCCCCEEEEE
T ss_pred EEEeCCCCcCCccc---CCEEEEEEECcccccCHHHHHHHHHHHHHHH---------hhccCCcCcEEEEEECCCceeec
Confidence 34555665554443 4666777777777665 57899999998750 0112444558999988877433
Q ss_pred -----CCCcc---ccccccceeeccccccccccCeEEEeeCCc
Q psy4541 165 -----ETPSA---LKLCSDLYHTTPCLHHIKLLTRLRVVDNCE 199 (309)
Q Consensus 165 -----~~~~~---~~~~~~~~s~s~~~~MIq~~T~LnVaDNSG 199 (309)
..|+. -.|.+++-.......-+..|..|.-++..+
T Consensus 100 nkmls~kgAdRlqtgMg~gkGkp~~wvArVkpGqilfEi~~~~ 142 (214)
T 2zkr_h 100 NKMLSCAGADRLQTGMRGAFGKPQGTVAKVHIGQVIMSIRTKL 142 (214)
T ss_dssp CTTTCCSSCSSTTSSSTTCCCEEEEEEEEECTTCEEEEEEECS
T ss_pred ccccccCCchhhcccccCCCCCCcEEEEEECCCCEEEEEeCCC
Confidence 33333 445555666665556688888888777643
No 22
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=35.96 E-value=38 Score=25.71 Aligned_cols=44 Identities=14% Similarity=0.024 Sum_probs=36.7
Q ss_pred eeeeCCEEEEEEc-CeeeeEEEEeeeeccCCCceeeCCceEEEEC
Q psy4541 222 IGTIGDKVLVAIK-GEKKKGIIVGVKKHQKPHIPKTDTNNVVLID 265 (309)
Q Consensus 222 ~A~VGD~IvVSVK-GeV~kAVIVRtKk~~~R~~IkFddNAvVLLN 265 (309)
.=++||-|++.=. |..+.|-|+.-.+......++|+||.--.+-
T Consensus 13 ~f~vGddVLA~wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~ 57 (66)
T 2eqj_A 13 KFEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVL 57 (66)
T ss_dssp CSCTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred cccCCCEEEEEEccCcEEEeEEEEEccCCcEEEEEEccCCEEEEE
Confidence 3579999998866 9999999999888777779999999876553
No 23
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=35.85 E-value=36 Score=28.14 Aligned_cols=40 Identities=20% Similarity=0.097 Sum_probs=31.6
Q ss_pred eeeeCCEEEEEEc-CeeeeEEEEeeeeccCCCceeeCCceEE
Q psy4541 222 IGTIGDKVLVAIK-GEKKKGIIVGVKKHQKPHIPKTDTNNVV 262 (309)
Q Consensus 222 ~A~VGD~IvVSVK-GeV~kAVIVRtKk~~~R~~IkFddNAvV 262 (309)
.-++||.|.+.-+ |..++|.|++.+.+. --.+.|+||+.-
T Consensus 5 ~v~vGq~V~akh~ngryy~~~V~~~~~~~-~y~V~F~DgS~s 45 (118)
T 2qqr_A 5 SITAGQKVISKHKNGRFYQCEVVRLTTET-FYEVNFDDGSFS 45 (118)
T ss_dssp CCCTTCEEEEECTTSSEEEEEEEEEEEEE-EEEEEETTSCEE
T ss_pred eeccCCEEEEECCCCCEEeEEEEEEeeEE-EEEEEcCCCCcc
Confidence 4579999997666 999999999987663 236899998764
No 24
>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_H 4a1c_H 4a1e_H
Probab=35.24 E-value=13 Score=33.73 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=34.0
Q ss_pred cchhhhhhhheeeee-ehhhhhhhhhhhCCCCeEEEeeeccceeeccce----eEEEeecccccCCCC
Q psy4541 105 PCLHHIKLLTRLRVV-DNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDK----VLVAIKGEKKKGETP 167 (309)
Q Consensus 105 ~~~~~~~~~~~~~~~-~~~e~~rq~~~~~~~~~~~~~~~~~~~g~~g~~----~~v~~~~~~~~~~~~ 167 (309)
|.--|+..+..-++- .++||||.|+.+- +-..+++ +|+-++|-+.-+..|
T Consensus 47 p~~~~L~a~E~~qIss~qIEAARia~nRy-------------l~r~~GK~~fhl~IRifP~~vir~nk 101 (215)
T 4a17_H 47 PYVVHIVSDEKEQITSEALEAARIAANKN-------------LIKFISKDAFHLRCRVHPWHVLRINK 101 (215)
T ss_dssp CEEEEEEECSCEEEEHHHHHHHHHHHHHH-------------HHHHSCGGGCEEEECCCCCEEEEECC
T ss_pred CeeEEEEECccccCcHHHHHHHHHHHHHH-------------HHHhcCCccceEEEEECCCceeeecc
Confidence 545566777766665 6899999999875 1222555 999888875554444
No 25
>3j21_N 50S ribosomal protein L10E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.81 E-value=18 Score=32.15 Aligned_cols=81 Identities=7% Similarity=-0.004 Sum_probs=49.4
Q ss_pred Ccchhhhhhhheeeee-ehhhhhhhhhhhCCCCeEEEeeeccceeeccce----eEEEeecccccCCCCc---------c
Q psy4541 104 TPCLHHIKLLTRLRVV-DNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDK----VLVAIKGEKKKGETPS---------A 169 (309)
Q Consensus 104 ~~~~~~~~~~~~~~~~-~~~e~~rq~~~~~~~~~~~~~~~~~~~g~~g~~----~~v~~~~~~~~~~~~~---------~ 169 (309)
-|.--|++.+..-++- .++||||.|+.+- +-..+++ +|+-++|-+.-+..|. .
T Consensus 43 fp~~~~L~a~E~~qIss~qiEAARia~nRy-------------l~r~~Gk~~fhl~IRifP~~vir~nkmls~agAdRl~ 109 (181)
T 3j21_N 43 FEFEVSLHTAEPVQIRQNALEAARQQVNRY-------------LQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYG 109 (181)
T ss_dssp CCEEEEEEECSCEEEEHHHHHHHHHHHHHH-------------HHHHHCTTSCEEECCCCCCCCCCCCCCCCCCTTCCSC
T ss_pred CCEEEEEEEcccccccHHHHHHHHHHHHHH-------------HHHhcCCccceEEEEECCCceeeecccccccchhhhc
Confidence 4555567777766665 6899999999875 1222445 9999998876665441 1
Q ss_pred ccccccceeeccccccccccCeEEEeeC
Q psy4541 170 LKLCSDLYHTTPCLHHIKLLTRLRVVDN 197 (309)
Q Consensus 170 ~~~~~~~~s~s~~~~MIq~~T~LnVaDN 197 (309)
-.|..++-.......-+..|..|.-++.
T Consensus 110 ~gM~~~kGkp~gwvArVk~Gqilfei~~ 137 (181)
T 3j21_N 110 NGMRRPFGKPIGLAARLKKDQKILSIRV 137 (181)
T ss_dssp CSSSSCSCCCCCCEEEECSSEEEEEEEE
T ss_pred cccccccCCcceEEEEEcCCCEEEEEEe
Confidence 1233334444443445666666665554
No 26
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=29.67 E-value=55 Score=24.30 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=34.2
Q ss_pred eeCCEEEEEEc-CeeeeEEEEeeeeccCCCceeeCCceEEEE
Q psy4541 224 TIGDKVLVAIK-GEKKKGIIVGVKKHQKPHIPKTDTNNVVLI 264 (309)
Q Consensus 224 ~VGD~IvVSVK-GeV~kAVIVRtKk~~~R~~IkFddNAvVLL 264 (309)
..||-|++--. |..+.|=|++-.+......++|+||.-.-+
T Consensus 5 ~~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~ 46 (58)
T 4hcz_A 5 WEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLV 46 (58)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ccCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCCCeEEE
Confidence 46888888887 999999999987777677999999986654
No 27
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1
Probab=28.47 E-value=23 Score=30.54 Aligned_cols=85 Identities=8% Similarity=0.001 Sum_probs=43.9
Q ss_pred cchhhhhhhheeeee-ehhhhhhhhhhhCCCCeEEEeeeccceeeccceeEEEeeccccc------CCCCcc---ccccc
Q psy4541 105 PCLHHIKLLTRLRVV-DNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKK------GETPSA---LKLCS 174 (309)
Q Consensus 105 ~~~~~~~~~~~~~~~-~~~e~~rq~~~~~~~~~~~~~~~~~~~g~~g~~~~v~~~~~~~~------~~~~~~---~~~~~ 174 (309)
|+--|++.+..-++- .++||+|.|+.+.- ....|.-+-++|+-++|-+.- ...|.. -.|.+
T Consensus 16 p~~~~L~a~E~~~Its~qIEAaRia~~R~l---------kr~~Gk~~~~iwIRifP~~~ir~nkmlT~kgadRlq~gMg~ 86 (151)
T 2pa2_A 16 PLCGHMVSDEYEQLSSEALEAARICANKYM---------VKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRG 86 (151)
T ss_dssp CEEEEEEECSCEEEEHHHHHHHHHHHHHHH---------HHHHCTTSEEEEECCSCC-----------------------
T ss_pred CEEEEEEECccccCCHHHHHHHHHHHHHHH---------hhhcCCcCcEEEEEECCCeeEeecccccccchhhhhccccc
Confidence 444556666655554 47899999998750 011244445899999988755 334443 44555
Q ss_pred cceeeccccccccccCeEEEeeCC
Q psy4541 175 DLYHTTPCLHHIKLLTRLRVVDNC 198 (309)
Q Consensus 175 ~~~s~s~~~~MIq~~T~LnVaDNS 198 (309)
++-+......-+.+|..|.-++..
T Consensus 87 gkG~p~~wvArVk~G~ilfei~~~ 110 (151)
T 2pa2_A 87 AFGKPQGTVARVHIGQVIMSIRTK 110 (151)
T ss_dssp ------CCEEEECTTBEEEEEEEC
T ss_pred CCCCccEEEEEECCCCEEEEEECC
Confidence 565665555668888888887763
No 28
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle, tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB: 3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I 4b6a_I
Probab=23.03 E-value=14 Score=33.76 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=33.1
Q ss_pred cchhhhhhhheeeee-ehhhhhhhhhhhCCCCeEEEeeeccceeeccce----eEEEeecccccCCCC
Q psy4541 105 PCLHHIKLLTRLRVV-DNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDK----VLVAIKGEKKKGETP 167 (309)
Q Consensus 105 ~~~~~~~~~~~~~~~-~~~e~~rq~~~~~~~~~~~~~~~~~~~g~~g~~----~~v~~~~~~~~~~~~ 167 (309)
|.--|++.+..-++- .++||||.||.+- +-..+++ +|+-++|-+.-+..|
T Consensus 45 p~~~~L~a~E~~qIss~qIEAARia~nRy-------------l~r~~GK~~fhlwIRifP~~vir~nk 99 (219)
T 3j0l_J 45 PLCVHLVSNELEQLSSEALEAARICANKY-------------MTTVSGRDAFHLRVRVHPFHVLRINK 99 (219)
T ss_dssp CCCEEEECCSCEEECHHHHHHHHHHHHHH-------------HHHTTCTTTCCBCCCSCCCCEEEECC
T ss_pred CeeEEEEECccccccHHHHHHHHHHHHHH-------------HHHhcCCccceEEEEECCCceeeecc
Confidence 555566777766665 6899999999875 2222455 888887765554433
Done!