RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4541
(309 letters)
>gnl|CDD|201105 pfam00238, Ribosomal_L14, Ribosomal protein L14p/L23e.
Length = 122
Score = 74.0 bits (183), Expect = 1e-16
Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 33/139 (23%)
Query: 186 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHI--GTIGDKVLVAI---------- 233
I++ TRL V DN K + I + + +GD ++V++
Sbjct: 2 IQVGTRLNVADNSGA--------KKVKCIKVLGGSRKKYAKVGDIIVVSVKKAIPKGKVK 53
Query: 234 KGEKKKGIIVGVKKHQK---PHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEK 290
KG+ K +IV KK + + D N VVLI++ G P GTRI P+ LR +K
Sbjct: 54 KGDVVKAVIVRTKKEVRRKDGSYIRFDDNAVVLINNKGEPKGTRIFGPVARELR---AKK 110
Query: 291 TLSKGADYTKLLAIATTFI 309
+ K+L++A +
Sbjct: 111 -------FPKILSLAPEVL 122
Score = 35.1 bits (82), Expect = 0.010
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 15/63 (23%)
Query: 34 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHI--GTIGDKVLVAIK-----GEKK 86
I++ TRL V DN K + I + + +GD ++V++K G+ K
Sbjct: 2 IQVGTRLNVADNSGA--------KKVKCIKVLGGSRKKYAKVGDIIVVSVKKAIPKGKVK 53
Query: 87 KGE 89
KG+
Sbjct: 54 KGD 56
Score = 35.1 bits (82), Expect = 0.010
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 15/63 (23%)
Query: 110 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHI--GTIGDKVLVAIK-----GEKK 162
I++ TRL V DN K + I + + +GD ++V++K G+ K
Sbjct: 2 IQVGTRLNVADNSGA--------KKVKCIKVLGGSRKKYAKVGDIIVVSVKKAIPKGKVK 53
Query: 163 KGE 165
KG+
Sbjct: 54 KGD 56
>gnl|CDD|180117 PRK05483, rplN, 50S ribosomal protein L14; Validated.
Length = 122
Score = 49.8 bits (120), Expect = 7e-08
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 25/115 (21%)
Query: 186 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTH--IGTIGDKVLVAIK-----GEKK 238
I+ TRL V DN ++ M I + + +IGD ++V++K G+ K
Sbjct: 2 IQQETRLNVADNSG-AKEVM-------CIKVLGGSKRRYASIGDVIVVSVKEAIPRGKVK 53
Query: 239 KG-----IIVGVKKHQK----PHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLR 284
KG ++V KK + +I + D N VL+++ G P GTRI P+ LR
Sbjct: 54 KGDVVKAVVVRTKKGVRRPDGSYI-RFDDNAAVLLNNDGEPRGTRIFGPVARELR 107
>gnl|CDD|130139 TIGR01067, rplN_bact, ribosomal protein L14, bacterial/organelle.
This model distinguishes bacterial and most organellar
examples of ribosomal protein L14 from all archaeal and
eukaryotic forms [Protein synthesis, Ribosomal proteins:
synthesis and modification].
Length = 122
Score = 46.2 bits (110), Expect = 1e-06
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 35/136 (25%)
Query: 186 IKLLTRLRVVDNCEIGRQAM---AEGKPPRVIAIYNQTHIGTIGDKVLVAIK-----GEK 237
I+ +RL V DN ++ G R A T+GD ++V +K G+
Sbjct: 2 IQQQSRLNVADNSG-AKKVQCIKVLGGSRRRYA--------TVGDVIVVVVKDAIPNGKV 52
Query: 238 KKG-----IIVGVKKHQKPH---IPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKE 289
KKG +IV KK + + D N VLI+ + P GTRI P+ LR
Sbjct: 53 KKGDVVKAVIVRTKKGVRRKDGSYIRFDDNACVLINKNKEPRGTRIFGPVARELRD---- 108
Query: 290 KTLSKGADYTKLLAIA 305
+ K++++A
Sbjct: 109 ------KGFMKIVSLA 118
>gnl|CDD|223171 COG0093, RplN, Ribosomal protein L14 [Translation, ribosomal
structure and biogenesis].
Length = 122
Score = 45.3 bits (108), Expect = 3e-06
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 25/116 (21%)
Query: 186 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTH--IGTIGDKVLVAIK-----GEKK 238
I++ TRL V DN ++ M I + + +GD ++V++K G K
Sbjct: 2 IQVQTRLNVADNSG-AKEVM-------CIKVLGGSRRRYAGVGDIIVVSVKKAIPRGMVK 53
Query: 239 KG-----IIVGVKKHQK----PHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRT 285
KG ++V KK + +I K D N V+I+ G P GTRI P+ LR
Sbjct: 54 KGDVVKAVVVRTKKEVRRPDGSYI-KFDDNAAVIINPDGEPRGTRIFGPVARELRE 108
>gnl|CDD|176997 CHL00057, rpl14, ribosomal protein L14.
Length = 122
Score = 44.5 bits (106), Expect = 5e-06
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 31/134 (23%)
Query: 186 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAI-----------K 234
I+ T L V DN R+ M RV+ N+ + IGD V++A+ +
Sbjct: 2 IQPQTYLNVADNSG-ARKLMC----IRVLGASNRKY-AHIGD-VIIAVVKEAVPNMPLKR 54
Query: 235 GEKKKGIIVGVKKHQKPH---IPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKT 291
E + +IV K K I + D N V+ID G P GTR+ PI LR
Sbjct: 55 SEVVRAVIVRTCKELKRDNGMIIRFDDNAAVVIDQEGNPKGTRVFGPIARELR------- 107
Query: 292 LSKGADYTKLLAIA 305
++TK++++A
Sbjct: 108 ---EKNFTKIVSLA 118
>gnl|CDD|132712 TIGR03673, rpl14p_arch, 50S ribosomal protein L14P. Part of the
50S ribosomal subunit. Forms a cluster with proteins L3
and L24e, part of which may contact the 16S rRNA in 2
intersubunit bridges.
Length = 131
Score = 33.5 bits (77), Expect = 0.048
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 225 IGDKVLVAIKG---EKKKGIIVGVKKHQKPHIPKTD-------TNNVVLIDDSGTPLGTR 274
+GD V+V++K E +K + V Q+ + D N VV++ G P GT
Sbjct: 48 VGDMVVVSVKKGTPEMRKQVFKAVVVRQRKEYRRPDGTRVKFEDNAVVIVTPDGEPKGTE 107
Query: 275 IHVPIP 280
I P+
Sbjct: 108 IKGPVA 113
>gnl|CDD|181478 PRK08571, rpl14p, 50S ribosomal protein L14P; Reviewed.
Length = 132
Score = 32.2 bits (74), Expect = 0.14
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 225 IGDKVLVAIKG---EKKKGIIVGVKKHQKPHIPKTD-------TNNVVLIDDSGTPLGTR 274
+GD V+V++K E +K ++ V Q+ + D N V++ GTP GT
Sbjct: 49 VGDMVVVSVKKGTPEMRKQVLRAVVVRQRKEYRRPDGTRVKFEDNAAVIVTPEGTPKGTE 108
Query: 275 IHVPI 279
I P+
Sbjct: 109 IKGPV 113
>gnl|CDD|129553 TIGR00461, gcvP, glycine dehydrogenase (decarboxylating). This
apparently ubiquitous enzyme is found in bacterial,
mammalian and plant sources. The enzyme catalyzes the
reaction: GLYCINE + LIPOYLPROTEIN =
S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of
the glycine decarboxylase multienzyme complex (GDC)
consisting of four proteins P, H, L and T. Active site
in E.coli is located as the (K) residues at position 713
of the SEED alignment [Energy metabolism, Amino acids
and amines].
Length = 939
Score = 31.4 bits (71), Expect = 0.72
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 243 VGVKKHQKPHIPKTDTNNVVLIDD--------SGTPLGTRIHVPIPSMLRTILKEKTLSK 294
+GVK H P +PK D +++ S P G+ +PI M ++ + L K
Sbjct: 707 IGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPK 766
>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated.
Length = 265
Score = 28.2 bits (63), Expect = 4.5
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 7 VKSLLSRTPSALKLCSDLYHT------TPCLHHI--KLLTRLRVVDNCEIGRQAMAEGKP 58
+ +LL +P AL+ DL +P L + R+RV + G +A E +
Sbjct: 199 IANLLLNSPQALRASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRT 258
Query: 59 P 59
P
Sbjct: 259 P 259
>gnl|CDD|224191 COG1272, COG1272, Predicted membrane protein, hemolysin III
homolog [General function prediction only].
Length = 226
Score = 27.6 bits (62), Expect = 7.7
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 17 ALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEI 48
L L S LYH+ P + K LR D+ I
Sbjct: 67 LLFLVSTLYHSIP--NGQKAKAILRKFDHSGI 96
Score = 27.6 bits (62), Expect = 7.7
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 93 ALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEI 124
L L S LYH+ P + K LR D+ I
Sbjct: 67 LLFLVSTLYHSIP--NGQKAKAILRKFDHSGI 96
Score = 27.6 bits (62), Expect = 7.7
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 169 ALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEI 200
L L S LYH+ P + K LR D+ I
Sbjct: 67 LLFLVSTLYHSIP--NGQKAKAILRKFDHSGI 96
>gnl|CDD|148769 pfam07349, DUF1478, Protein of unknown function (DUF1478). This
family consists of several hypothetical Sapovirus
proteins of around 165 residues in length. The function
of this family is unknown.
Length = 162
Score = 27.1 bits (60), Expect = 9.8
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 10 LLSRTPSALKLCSDLYHTTPCLHHIKLLTR 39
LL T +L DLY P L ++R
Sbjct: 72 LLGTTDCPRELILDLYRFIPTLTRTLRISR 101
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.405
Gapped
Lambda K H
0.267 0.0627 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,536,180
Number of extensions: 1498556
Number of successful extensions: 1141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1133
Number of HSP's successfully gapped: 30
Length of query: 309
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 212
Effective length of database: 6,635,264
Effective search space: 1406675968
Effective search space used: 1406675968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.7 bits)