RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4541
(309 letters)
>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 122
Score = 68.6 bits (168), Expect = 4e-15
Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 33/139 (23%)
Query: 186 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHI--GTIGDKVLVAI-----KGEKK 238
I+ +RL+V DN + VI + + IGD V+ + G K
Sbjct: 2 IQQESRLKVADNSG--------AREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVK 53
Query: 239 KGIIVGV--------KKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEK 290
KG +V + + D N V+I D +P GTRI P+ LR
Sbjct: 54 KGQVVKAVVVRTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELR------ 107
Query: 291 TLSKGADYTKLLAIATTFI 309
D+ K++++A I
Sbjct: 108 ----DKDFMKIISLAPEVI 122
Score = 28.6 bits (64), Expect = 0.49
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 15/85 (17%)
Query: 34 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHI--GTIGDKVLVAI-----KGEKK 86
I+ +RL+V DN + VI + + IGD V+ + G K
Sbjct: 2 IQQESRLKVADNS--------GAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVK 53
Query: 87 KGETPSALKLCSDLYHTTPCLHHIK 111
KG+ A+ + + P +I+
Sbjct: 54 KGQVVKAVVVRTKRGVRRPDGSYIR 78
Score = 28.6 bits (64), Expect = 0.49
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 15/85 (17%)
Query: 110 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHI--GTIGDKVLVAI-----KGEKK 162
I+ +RL+V DN + VI + + IGD V+ + G K
Sbjct: 2 IQQESRLKVADNS--------GAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVK 53
Query: 163 KGETPSALKLCSDLYHTTPCLHHIK 187
KG+ A+ + + P +I+
Sbjct: 54 KGQVVKAVVVRTKRGVRRPDGSYIR 78
>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus
thermophilus [TaxId: 274]}
Length = 122
Score = 65.1 bits (159), Expect = 5e-14
Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 33/139 (23%)
Query: 186 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIY--NQTHIGTIGDKVLVAI---------- 233
I+ T L V DN + I + + T+GD ++ ++
Sbjct: 2 IQPQTYLEVADNTG--------ARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVK 53
Query: 234 KGEKKKGIIVGVKKHQKPH---IPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEK 290
+G+ K ++V KK K + D N V+I++ P GTR+ P+ LR
Sbjct: 54 EGDVVKAVVVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARELR------ 107
Query: 291 TLSKGADYTKLLAIATTFI 309
+ K++++A +
Sbjct: 108 ----EKGFMKIVSLAPEVL 122
Score = 29.3 bits (66), Expect = 0.26
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 10/57 (17%)
Query: 34 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIY--NQTHIGTIGDKVLVAIKGEKKKG 88
I+ T L V DN + I + + T+GD ++ ++K +G
Sbjct: 2 IQPQTYLEVADNTG--------ARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRG 50
Score = 29.3 bits (66), Expect = 0.26
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 10/57 (17%)
Query: 110 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIY--NQTHIGTIGDKVLVAIKGEKKKG 164
I+ T L V DN + I + + T+GD ++ ++K +G
Sbjct: 2 IQPQTYLEVADNTG--------ARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRG 50
>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 132
Score = 61.7 bits (150), Expect = 1e-12
Identities = 22/140 (15%), Positives = 55/140 (39%), Gaps = 35/140 (25%)
Query: 186 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIY------NQTHIGTIGDKVLVAIK----- 234
++ + + DN + +VI+++ N+ +GDK+ V++
Sbjct: 12 LEKGSLITCADNTG--------ARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPE 63
Query: 235 --GEKKKGIIVGVKKHQKPH---IPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKE 289
+ + ++V +K + K + N V++D++ P GT + PI + +
Sbjct: 64 MRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVA----Q 119
Query: 290 KTLSKGADYTKLLAIATTFI 309
+ + + + AT +
Sbjct: 120 R-------FGSVASAATMIV 132
Score = 25.9 bits (57), Expect = 3.5
Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 14/61 (22%)
Query: 34 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIY------NQTHIGTIGDKVLVAIKGEKKK 87
++ + + DN + +VI+++ N+ +GDK+ V++ +
Sbjct: 12 LEKGSLITCADNT--------GARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPE 63
Query: 88 G 88
Sbjct: 64 M 64
Score = 25.9 bits (57), Expect = 3.5
Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 14/61 (22%)
Query: 110 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIY------NQTHIGTIGDKVLVAIKGEKKK 163
++ + + DN + +VI+++ N+ +GDK+ V++ +
Sbjct: 12 LEKGSLITCADNT--------GARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPE 63
Query: 164 G 164
Sbjct: 64 M 64
>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli
[TaxId: 562]}
Length = 121
Score = 50.2 bits (120), Expect = 1e-08
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 24/115 (20%)
Query: 186 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHI--GTIGDKVLVAI---------- 233
I+ T L V DN + I + +H +GD + + I
Sbjct: 1 IQEQTMLNVADNSG--------ARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVK 52
Query: 234 KGEKKKGIIVGVKKHQKPH---IPKTDTNNVVLIDDSG-TPLGTRIHVPIPSMLR 284
KG+ K ++V KK + + + D N VL++++ P+GTRI P+ LR
Sbjct: 53 KGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELR 107
Score = 25.5 bits (56), Expect = 5.2
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 10/57 (17%)
Query: 34 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHI--GTIGDKVLVAIKGEKKKG 88
I+ T L V DN + I + +H +GD + + IK +G
Sbjct: 1 IQEQTMLNVADNS--------GARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRG 49
Score = 25.5 bits (56), Expect = 5.2
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 10/57 (17%)
Query: 110 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHI--GTIGDKVLVAIKGEKKKG 164
I+ T L V DN + I + +H +GD + + IK +G
Sbjct: 1 IQEQTMLNVADNS--------GARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRG 49
>d2ix0a2 b.40.4.5 (A:4-82) Exoribonuclease 2, RNB {Escherichia coli
[TaxId: 562]}
Length = 79
Score = 24.7 bits (54), Expect = 5.9
Identities = 5/22 (22%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 226 GDKVLVAIKGEKKK--GIIVGV 245
GD+++ I EK++ +
Sbjct: 54 GDRIIAVIHSEKERESAEPEEL 75
>d1m1na_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
chain {Azotobacter vinelandii [TaxId: 354]}
Length = 477
Score = 25.8 bits (56), Expect = 8.9
Identities = 14/91 (15%), Positives = 26/91 (28%)
Query: 50 RQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHH 109
+ + I++ ++ IG IGD + K + + C + L H
Sbjct: 133 DEVETLFPLNKGISVQSECPIGLIGDDIESVSKVKGAELSKTIVPVRCEGFRGVSQSLGH 192
Query: 110 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAI 140
+R + P V I
Sbjct: 193 HIANDAVRDWVLGKRDEDTTFASTPYDVAII 223
Score = 25.8 bits (56), Expect = 8.9
Identities = 14/91 (15%), Positives = 26/91 (28%)
Query: 126 RQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHH 185
+ + I++ ++ IG IGD + K + + C + L H
Sbjct: 133 DEVETLFPLNKGISVQSECPIGLIGDDIESVSKVKGAELSKTIVPVRCEGFRGVSQSLGH 192
Query: 186 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAI 216
+R + P V I
Sbjct: 193 HIANDAVRDWVLGKRDEDTTFASTPYDVAII 223
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.405
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,134,316
Number of extensions: 53895
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 21
Length of query: 309
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,240,546
Effective search space: 277882304
Effective search space used: 277882304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)