Query psy4542
Match_columns 273
No_of_seqs 151 out of 738
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 19:46:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4542.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4542hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_U RPN8, 26S proteasome re 100.0 4.9E-68 1.7E-72 485.0 24.5 270 1-270 1-295 (338)
2 2o95_A 26S proteasome non-ATPa 100.0 9.5E-42 3.3E-46 287.5 20.1 173 3-175 6-184 (187)
3 4e0q_A COP9 signalosome comple 100.0 1.1E-41 3.6E-46 273.9 9.1 133 2-134 3-139 (141)
4 4b4t_V 26S proteasome regulato 100.0 6.2E-35 2.1E-39 262.6 14.2 238 4-249 24-297 (306)
5 2znr_A AMSH-like protease; met 99.4 7.1E-13 2.4E-17 110.0 10.3 125 4-137 8-137 (178)
6 3rzv_A STAM-binding protein; u 99.3 1.3E-11 4.6E-16 104.5 11.5 124 5-138 42-171 (211)
7 2kks_A Uncharacterized protein 99.0 8.2E-09 2.8E-13 82.7 12.6 131 7-156 2-137 (146)
8 2kcq_A MOV34/MPN/PAD-1 family; 98.7 1.6E-08 5.4E-13 81.6 6.5 132 8-157 2-142 (153)
9 1oi0_A AF2198, hypothetical pr 98.0 3.9E-05 1.3E-09 59.3 9.6 105 6-133 3-111 (124)
10 2p8r_A PRP8, PRE-mRNA-splicing 96.7 0.0032 1.1E-07 54.6 6.8 110 16-138 46-172 (273)
11 2og4_A PRE-mRNA-splicing facto 96.3 0.0056 1.9E-07 52.6 5.7 111 16-137 45-168 (254)
12 3sbg_A PRE-mRNA-splicing facto 95.0 0.016 5.5E-07 54.3 3.8 102 28-137 368-479 (565)
13 2rh2_A Dihydrofolate reductase 74.0 1 3.6E-05 28.5 0.9 12 81-92 23-34 (62)
14 2akf_A Coronin-1A; coiled coil 64.9 11 0.00038 20.8 3.7 28 178-205 4-31 (32)
15 2p6v_A Transcription initiatio 24.1 1.6E+02 0.0056 21.6 5.4 34 212-245 37-72 (114)
16 3bqp_A Proactivator polypeptid 24.0 1.5E+02 0.005 19.4 5.0 32 198-230 10-41 (80)
No 1
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-68 Score=484.95 Aligned_cols=270 Identities=22% Similarity=0.447 Sum_probs=185.4
Q ss_pred CC-CCceEEEehhhHhHHHHHHhhcc-CCCceEEEEEeeeEeCCEEEEEEEEeeccccCch---hhHhhHHHHHHHHHHH
Q psy4542 1 MS-LNVSIKVHPVVLFQIVDAFERRN-LDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDE---MVEAELNYAQDMFEMN 75 (273)
Q Consensus 1 ~~-~~~~V~lhPlvll~I~dh~~r~~-~~~~~v~G~LLG~~~~~~veV~~sF~vp~~~~~~---~~~id~~~~~~m~~l~ 75 (273)
|+ ...+|.|||+|||+|+|||+|++ .++.+|+|+|||.++|+.|||+|||++|++++++ .+.+|.+|+++|+++|
T Consensus 1 ~s~~~~~V~vhPlVll~I~dH~~R~~~~~~~rViG~LLG~~~~~~veV~nsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~ 80 (338)
T 4b4t_U 1 MSLQHEKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMC 80 (338)
T ss_dssp -CCCCSEEEECHHHHHHHHHHHHHHTTTCCSCCEEEEEEEECSSEEEEEEEEECCEEECSSSTTCEEECHHHHHHHHHHH
T ss_pred CCCCCCEEEEecHHHHHHHHHHHHhhcCCCCeEEEEEEeEEcCCEEEEEEEEEeccccCCCCCccccccHHHHHHHHHHH
Confidence 55 45689999999999999999954 3467999999999999999999999999987643 4678999999999999
Q ss_pred hhhCCCCCeEEeecCCCCCCcccHHHHHHHHhhCC-CcEEEEEcCCCCCCCcceeEEEeeecCCCCC-cccceeeeeceE
Q psy4542 76 QKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECK-NPVHMTLDTNLKGPNMGIKGYVHVPIGVPGG-KSGIMFTQIPAE 153 (273)
Q Consensus 76 k~v~p~~~iVGWY~~g~~~~~~~~~i~~~~~~~~~-~pi~L~~D~~~~~~~l~ikay~~~~~~~~~~-~~~~~f~~ip~~ 153 (273)
|+|||++.+||||+||+.+++.|+.||++|+++++ +|++|++|+...++++|++||++.+....++ ..+..|+++|++
T Consensus 81 kkV~~~e~iVGWY~tg~~~~~~d~~Ih~~~~~~~~~~pi~l~~d~~~~~~~lpi~aY~s~~~~~~~~~~~~~~F~~lp~~ 160 (338)
T 4b4t_U 81 KKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQNNPLLLIVDVKQQGVGLPTDAYVAIEQVKDDGTSTEKTFLHLPCT 160 (338)
T ss_dssp HHHCCSCEEEEEEECCSSCCSTHHHHHHHHGGGCCSCCCEEEECSCCCSSSCSEEEEEEEEECSSCSTTCEEEEEEECEE
T ss_pred hhcCccCCEEEEEecCCCCCccHHHHHHHHHhccCCCcEEEEecCCCCCCCcceEEEEeehhccCCCcccccEEEEeeeE
Confidence 99999999999999999999999999999999985 8999999999989999999999987665543 456789999999
Q ss_pred EecCchHHHHHHHHHhhccCCC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhhcCCCCC
Q psy4542 154 VICYNSEVTGLRLLHKSIKQGA-VQPLSELTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMT 232 (273)
Q Consensus 154 i~~~e~E~i~v~~l~~~~~~~~-~~~~~~l~~~~~a~~~L~~~l~~i~~Yl~~V~~g~~~~d~~ilr~l~~~~~~lp~~~ 232 (273)
|+++|+||||++++++...+.+ .++..++..+.+++++|+.||+.|++|+++|.+|+.++|++|||+|+++|+++|.++
T Consensus 161 i~~~eaE~Igv~~l~r~~~~~~~~~l~~~l~~~~~al~~L~~~l~~i~~Yl~~V~~g~~~~n~~ilr~l~~~~~~lP~l~ 240 (338)
T 4b4t_U 161 IEAEEAEEIGVEHLLRDVRDQAAGGLSIRLTNQLKSLKGLQSKLKDVVEYLDKVINKELPINHTILGKLQDVFNLLPNLG 240 (338)
T ss_dssp ECSCHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------
T ss_pred eecCcHHHHHHHHHHhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhCCcCC
Confidence 9999999999999999887665 347889999999999999999999999999999999999999999999999999986
Q ss_pred H-----------------HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4542 233 Q-----------------EQFETMFNSNIKDLLMIMTLSQLTKTQLLLNEKLTLL 270 (273)
Q Consensus 233 ~-----------------~~f~~~~~~~~~D~lmv~yLs~ltk~~~~l~e~l~~~ 270 (273)
+ ++|+++|+.+.||++|++|||+|||+|++|+|++++-
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~f~~~f~~~~nD~Lmv~YLs~L~rs~~al~eli~nk 295 (338)
T 4b4t_U 241 TPDDDEIDVENHDRINISNNLQKALTVKTNDELMVIYISNLVRSIIAFDDLIENK 295 (338)
T ss_dssp -------------------------------------------------------
T ss_pred cccccccccccccccchhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4689999999999999999999999999999999763
No 2
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=100.00 E-value=9.5e-42 Score=287.48 Aligned_cols=173 Identities=31% Similarity=0.531 Sum_probs=154.0
Q ss_pred CCceEEEehhhHhHHHHHHhhcc--CCCceEEEEEeeeEeCCEEEEEEEEeeccccCch---hhHhhHHHHHHHHHHHhh
Q psy4542 3 LNVSIKVHPVVLFQIVDAFERRN--LDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDE---MVEAELNYAQDMFEMNQK 77 (273)
Q Consensus 3 ~~~~V~lhPlvll~I~dh~~r~~--~~~~~v~G~LLG~~~~~~veV~~sF~vp~~~~~~---~~~id~~~~~~m~~l~k~ 77 (273)
...+|.|||+|+++|+|||+|++ ..+.+|+|+|||.+.++.++|+|||++|+.++++ .+.+|.+|+.+|++++|+
T Consensus 6 ~~~~V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~~~~~~v~V~~~f~lp~~~~~~~~~~~~~d~ey~~~m~~~~~~ 85 (187)
T 2o95_A 6 AVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKK 85 (187)
T ss_dssp SCSEEEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEEESSSEEEEEEEEEECEEECSSCTTSEEECHHHHHHHHHHHHT
T ss_pred CCCEEEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEEEcCCEEEEEEEEEeCCcccCCCcchhhcCHHHHHHHHHHHHH
Confidence 45699999999999999999985 2578999999999999999999999999987644 357999999999999999
Q ss_pred hCCCCCeEEeecCCCCCCcccHHHHHHHHhhCCCcEEEEEcCCCCCCCcceeEEEeeecCCCCC-cccceeeeeceEEec
Q psy4542 78 VNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTNLKGPNMGIKGYVHVPIGVPGG-KSGIMFTQIPAEVIC 156 (273)
Q Consensus 78 v~p~~~iVGWY~~g~~~~~~~~~i~~~~~~~~~~pi~L~~D~~~~~~~l~ikay~~~~~~~~~~-~~~~~f~~ip~~i~~ 156 (273)
++|++.+||||++++..+..|..||++|++.+++|++|++||....++++++||++.+.+..++ +....|+++|++|.+
T Consensus 86 v~~~~~iVGWY~s~~~~s~~d~~i~~~~~~~~~~~v~Livd~~~~~~~l~i~ay~~~~~~~~~~~~~~~~F~~ip~~I~~ 165 (187)
T 2o95_A 86 VNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGA 165 (187)
T ss_dssp TSSSCEEEEEEECCSSCCTTHHHHHHHHTTTCTTCEEEEECCCTTC-CCSEEEEEEEEECC----CCEEEEEEEEEEECC
T ss_pred hCCCCCEEEEEcCCCcCCcccHHHHHHHHhcCCCCEEEEECCCCCCCCcCeEEEEEechhcCCCCcccCEEEEeeEEEec
Confidence 9999999999999999999999999999999999999999998875569999999988766543 457889999999999
Q ss_pred CchHHHHHHHHHhhccCCC
Q psy4542 157 YNSEVTGLRLLHKSIKQGA 175 (273)
Q Consensus 157 ~e~E~i~v~~l~~~~~~~~ 175 (273)
+|+||||++++++...+.+
T Consensus 166 ~eaE~i~v~~l~~~~~~~~ 184 (187)
T 2o95_A 166 EEAEEVGVEHLLRDIKDTT 184 (187)
T ss_dssp CHHHHHHHHHHHHHCCSCC
T ss_pred CcHHHHHHHHHHhcCCCcc
Confidence 9999999999999987654
No 3
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-41 Score=273.93 Aligned_cols=133 Identities=20% Similarity=0.373 Sum_probs=114.5
Q ss_pred CCCceEEEehhhHhHHHHHHhhccC---CCceEEEEEeeeEeCCEEEEEEEEeeccccCchhhHhhHHHHHHHHHHHhhh
Q psy4542 2 SLNVSIKVHPVVLFQIVDAFERRNL---DSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEAELNYAQDMFEMNQKV 78 (273)
Q Consensus 2 ~~~~~V~lhPlvll~I~dh~~r~~~---~~~~v~G~LLG~~~~~~veV~~sF~vp~~~~~~~~~id~~~~~~m~~l~k~v 78 (273)
+++.+|+|||+|||+|+|||+|++. .+.+|+|+|||.++++.+||+|||++|++++++++.+|.+|+++|++++|+|
T Consensus 3 ~~~~~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~~~~~~veV~nsF~~p~~~~~~~~~~d~~y~~~m~~~~k~v 82 (141)
T 4e0q_A 3 HMSVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSFELKTDVIGDETVINKDYYNKKEQQYKQV 82 (141)
T ss_dssp --CEEEEECHHHHHHHHHHHHCC------CCEEEEEEEEEEETTEEEEEEEEECCEEEETTEEEECHHHHHHHHHHHHHH
T ss_pred CCcEEEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEEEeCCEEEEEEEEEecccCCCCceeecHHHHHHHHHHHHHh
Confidence 3678999999999999999999743 3679999999999999999999999999987777899999999999999999
Q ss_pred CCCCCeEEeecCCCCCCcccHHHHHHHHhhCCCcEEEEEcCCCCC-CCcceeEEEee
Q psy4542 79 NPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTNLKG-PNMGIKGYVHV 134 (273)
Q Consensus 79 ~p~~~iVGWY~~g~~~~~~~~~i~~~~~~~~~~pi~L~~D~~~~~-~~l~ikay~~~ 134 (273)
||++.+||||++|+.++..|+.||++|++++++||+|++||..+. |+||++||++.
T Consensus 83 ~~~e~iVGWY~s~~~~~~~d~~i~~~~~~~~~~pV~L~~Dp~~~~~g~Lp~~ay~sv 139 (141)
T 4e0q_A 83 FSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQLNPLSRSVDHLPLKLFESL 139 (141)
T ss_dssp STTCEEEEEEEEEC-------CHHHHHHHTTCCCEEEEESCSCCCCTTHHHHHHCC-
T ss_pred CCCccEEEEEeCCCCCCcchHHHHHHHHHHCCCCEEEEECCCccCCCeEEEEEEEEE
Confidence 999999999999999999999999999999999999999999874 67999999874
No 4
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-35 Score=262.60 Aligned_cols=238 Identities=14% Similarity=0.199 Sum_probs=188.9
Q ss_pred CceEEEehhhHhHHHHHHhhccCCCceEEEEEeeeE-eCCEEEEEEEEeeccccCchhh-HhhHHHHHHHHHHHhhhCCC
Q psy4542 4 NVSIKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTV-DKGVVEVTNCFCVPHKEYDEMV-EAELNYAQDMFEMNQKVNPS 81 (273)
Q Consensus 4 ~~~V~lhPlvll~I~dh~~r~~~~~~~v~G~LLG~~-~~~~veV~~sF~vp~~~~~~~~-~id~~~~~~m~~l~k~v~p~ 81 (273)
..+|.|+|+|+|+|++|+.+ ..+..|+|+|||.. +++.++|+|||++|+.++++.+ ++|.+|+.+|++++++++++
T Consensus 24 ~~~V~is~lallkm~~Ha~~--~~~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~~~~~v~~~d~~y~~~m~~~~~~v~~~ 101 (306)
T 4b4t_V 24 KETVYISSIALLKMLKHGRA--GVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTGRD 101 (306)
T ss_dssp CCEEEECHHHHHHHHHHTCS--CSSSCCEEEEEEEEETTTEEEEEEEECCCCEESSSCEECCCHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEeHHHHHHHHHHhcC--CCCceEEEEEeeEEcCCeEEEEEEEEeCCcCCCCCchhcCCHHHHHHHHHHHHHhCCC
Confidence 57899999999999999954 35789999999985 5668999999999998876655 58999999999999999999
Q ss_pred CCeEEeecCCC----CCCcccHHHHHHHHhhCCCcEEEEEcCCCC-CCCcceeEEEeeecCCC-----C-----------
Q psy4542 82 ELIVGWWATGD----EVTSQSSVIHDYYIRECKNPVHMTLDTNLK-GPNMGIKGYVHVPIGVP-----G----------- 140 (273)
Q Consensus 82 ~~iVGWY~~g~----~~~~~~~~i~~~~~~~~~~pi~L~~D~~~~-~~~l~ikay~~~~~~~~-----~----------- 140 (273)
+.+||||++++ +++..|+.+|..|++.++++|+|++||..+ +|+++++||++.+.+.. .
T Consensus 102 ~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t~~G~~~i~Afr~~~~~~~~~~~~~~~~~s~~~~~~ 181 (306)
T 4b4t_V 102 QMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDTGALINNLEPRQTTSNTGLLN 181 (306)
T ss_dssp CCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSSSSSCSSCEEEEECCHHHHHHCCCCCSCC--------
T ss_pred cceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCcCCCCceeeeEEEecCccccccccCcccccccccccC
Confidence 99999999965 577889999999999999999999999876 69999999999864310 0
Q ss_pred --------CcccceeeeeceEEecCchHHHHHHHHHhhccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy4542 141 --------GKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAVQPLSELTLVSEAADKLTVLIDHVLRYVDEVLANRIT 212 (273)
Q Consensus 141 --------~~~~~~f~~ip~~i~~~e~E~i~v~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~l~~i~~Yl~~V~~g~~~ 212 (273)
......|.++|+++..++.|+..++.+.+..+..+.+..........+.+.+.++++.+.+|.+.|.+|+..
T Consensus 182 ~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~~~l~~~~~~~~~~~~~~~i~~m~~~~~~y~k~v~~e~~~ 261 (306)
T 4b4t_V 182 KANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMYDYEEKEESNLAATKSMVKIAEQYSKRIEEEKEL 261 (306)
T ss_dssp --------------CEEECSCCCCCSSCTHHHHHHHHC----------CHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred chhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 012346999999999999999999999987765443444556677788899999999999999999998866
Q ss_pred CChHHHHHHHHHhhcCCCCCH-----HHHHHHHHhhhhhHHH
Q psy4542 213 PDNSIGRQLLDMVNSVPSMTQ-----EQFETMFNSNIKDLLM 249 (273)
Q Consensus 213 ~d~~ilr~l~~~~~~lp~~~~-----~~f~~~~~~~~~D~lm 249 (273)
.+.++. ...+|+.++ +.++..++++..+.+-
T Consensus 262 ~~~~l~------~~~vgk~dp~~~l~~~~~~l~~~ni~~~l~ 297 (306)
T 4b4t_V 262 TEEELK------TRYVGRQDPKKHLSETADETLENNIVSVLT 297 (306)
T ss_dssp HHHHHH------HTCSCSSCCSSSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHH------hhccCccChHHHHHHHHHHHHHHHHHHHHH
Confidence 666654 466777775 6777777777665443
No 5
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=99.42 E-value=7.1e-13 Score=109.98 Aligned_cols=125 Identities=12% Similarity=0.160 Sum_probs=97.4
Q ss_pred CceEEEehhhHhHHHHHHhhccCCCceEEEEEeeeEeCCEEEEEEEEeeccccCchhhH-hhHHHHHHHHHHHhhhCCCC
Q psy4542 4 NVSIKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVE-AELNYAQDMFEMNQKVNPSE 82 (273)
Q Consensus 4 ~~~V~lhPlvll~I~dh~~r~~~~~~~v~G~LLG~~~~~~veV~~sF~vp~~~~~~~~~-id~~~~~~m~~l~k~v~p~~ 82 (273)
-..|.|...++.+|+.|+.++...+..++|.|+|...++..+|+++|++|...+.+.+. .+.+- .++. ....++
T Consensus 8 ~~~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~~~~~V~~v~~~pq~~t~~~~~~~~~~e---~~~~--~~~~~l 82 (178)
T 2znr_A 8 LRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENVEE---LFNV--QDQHDL 82 (178)
T ss_dssp CCCEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEETTEEEEEEEEECCEEEETTEEEECCHHH---HHHH--HHHHTC
T ss_pred cEEEEECHHHHHHHHHHHHhCCCCCceEEEEEeeEecCCCeEEEEEEeCCcCCCCCeeccCCHHH---HHHH--HHhCCC
Confidence 35788999999999999988643456899999999988899999999999866544332 22211 1111 334689
Q ss_pred CeEEeecCC----CCCCcccHHHHHHHHhhCCCcEEEEEcCCCCCCCcceeEEEeeecC
Q psy4542 83 LIVGWWATG----DEVTSQSSVIHDYYIRECKNPVHMTLDTNLKGPNMGIKGYVHVPIG 137 (273)
Q Consensus 83 ~iVGWY~~g----~~~~~~~~~i~~~~~~~~~~pi~L~~D~~~~~~~l~ikay~~~~~~ 137 (273)
.+||||+|. ..++..|+..|..|+...+..++++++|..+ .++||++.+.+
T Consensus 83 ~~vGwyHSHP~~~~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~~----~~~afrl~~~g 137 (178)
T 2znr_A 83 LTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHK----DTGIFRLTNAG 137 (178)
T ss_dssp EEEEEEEECSSSCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGGT----EEEEEEECHHH
T ss_pred EEEEEEeCCCCCCCCCCHHHHHHHHHHHhhcCCEEEEEEcCCCC----cceEEEEECCc
Confidence 999999995 4788899999999998888899999999863 37999998754
No 6
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=99.31 E-value=1.3e-11 Score=104.50 Aligned_cols=124 Identities=11% Similarity=0.080 Sum_probs=95.1
Q ss_pred ceEEEehhhHhHHHHHHhhccCCCceEEEEEeeeEeCCEEEEEEEEeeccccCchhhHh-h-HHHHHHHHHHHhhhCCCC
Q psy4542 5 VSIKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEA-E-LNYAQDMFEMNQKVNPSE 82 (273)
Q Consensus 5 ~~V~lhPlvll~I~dh~~r~~~~~~~v~G~LLG~~~~~~veV~~sF~vp~~~~~~~~~i-d-~~~~~~m~~l~k~v~p~~ 82 (273)
..|.|-.-++-+|+.|...+...+..++|.|+|...++..+|+++|..|...+++.+.. + .+.++-+.+ .++
T Consensus 42 r~v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~~~~~~~I~~v~~ppq~gt~~~v~~~~~~e~~~~~~~------~~l 115 (211)
T 3rzv_A 42 RHVVVPGRLCPQFLQLASANTARGVATCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQ------QGL 115 (211)
T ss_dssp CCEEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEEETTEEEEEEEEECCEEECSSCEEECCHHHHHHHHHH------HTC
T ss_pred EEEEECHHHHHHHHHHHHhCCCCCceEEEEEEeEcCCCCEEEEEEEeCCccCCCCceeccChHHHHHHHhh------CCC
Confidence 46788888999999998775333568999999999889999999998887665443321 1 111111111 499
Q ss_pred CeEEeecCC----CCCCcccHHHHHHHHhhCCCcEEEEEcCCCCCCCcceeEEEeeecCC
Q psy4542 83 LIVGWWATG----DEVTSQSSVIHDYYIRECKNPVHMTLDTNLKGPNMGIKGYVHVPIGV 138 (273)
Q Consensus 83 ~iVGWY~~g----~~~~~~~~~i~~~~~~~~~~pi~L~~D~~~~~~~l~ikay~~~~~~~ 138 (273)
.+||||+|. .+++..|+..|..|+...+..|++++||... ++.||++.+.|+
T Consensus 116 ~~vGWyHSHP~~~~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~~~----~lgaFrLtp~G~ 171 (211)
T 3rzv_A 116 ITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQ----ETGFFKLTDHGL 171 (211)
T ss_dssp EEEEEEEECTTSCSCCCHHHHHHHHHHHHHCTTCEEEEEETTTT----EEEEEEECHHHH
T ss_pred EEEEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCC----eeeEEEeccchh
Confidence 999999995 4788999999999998888889999999742 799999998654
No 7
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=98.97 E-value=8.2e-09 Score=82.68 Aligned_cols=131 Identities=8% Similarity=-0.018 Sum_probs=93.6
Q ss_pred EEEehhhHhHHHHHHhhccCCCceEEEEEeeeEeCCEEEEEEEEeeccccC-chhhHhhHHHHHHHHHHHhhhCCCCCeE
Q psy4542 7 IKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEY-DEMVEAELNYAQDMFEMNQKVNPSELIV 85 (273)
Q Consensus 7 V~lhPlvll~I~dh~~r~~~~~~~v~G~LLG~~~~~~veV~~sF~vp~~~~-~~~~~id~~~~~~m~~l~k~v~p~~~iV 85 (273)
+.|...++..|..|..+. .+..++|.|+|..+++...|+..|++|.... .+.+.+|.+.+.+..+..++ .++.+|
T Consensus 2 l~i~~~~l~~i~~ha~~~--~p~E~cGlL~G~~~~~~~~v~~~~p~~n~~~~~~~f~~dp~~~~~~~~~~~~--~g~~iv 77 (146)
T 2kks_A 2 ITLTKKQMEEMLAHARQA--LPNEACGLLGGRRDGDDRWVERVYPLNNLDQSPEHFSMDPREQLTAVKDMRK--NGWVML 77 (146)
T ss_dssp EEEEHHHHHHHHHHHHHH--TTSCEEEEEEEEEETTEEEEEEEECCCCCSCCSSSCCCCHHHHHHHHHHHHH--HTCEEE
T ss_pred EEECHHHHHHHHHHHHhc--CCcceEEEEEEEEcCCCcEEEEEEECCCcCCCCceEEECHHHHHHHHHHHHH--CCCEEE
Confidence 678889999999998775 5789999999999888899999999995443 23566776666555544443 358999
Q ss_pred EeecCCC----CCCcccHHHHHHHHhhCCCcEEEEEcCCCCCCCcceeEEEeeecCCCCCcccceeeeeceEEec
Q psy4542 86 GWWATGD----EVTSQSSVIHDYYIRECKNPVHMTLDTNLKGPNMGIKGYVHVPIGVPGGKSGIMFTQIPAEVIC 156 (273)
Q Consensus 86 GWY~~g~----~~~~~~~~i~~~~~~~~~~pi~L~~D~~~~~~~l~ikay~~~~~~~~~~~~~~~f~~ip~~i~~ 156 (273)
|||+|.+ .++..|... +. .+..+++++.+.. ++...+++|+... ..|.++|+.+..
T Consensus 78 G~~HSHP~~~~~PS~~D~~~----~~-~~~~~~lIvs~~~-~~~~~~~af~~~~---------~~~~e~~i~~~~ 137 (146)
T 2kks_A 78 GNFHSHPATPARPSAEDKRL----AF-DPSLSYLIISLAE-PQKPVCKSFLIKK---------DGVDEEEIILKE 137 (146)
T ss_dssp EEEEEESSSCSSCCHHHHTT----CC-SSSCEEEEEECSC-SSSCEEEEEEECS---------SCEEEECEEEES
T ss_pred EEEeCCCcCCCCCCHHHHHh----hh-cCCCeEEEEEccC-CCceEEEEEEEeC---------CeEEEEEEEEeh
Confidence 9999954 445544331 11 1345788887653 3456899999842 258999988754
No 8
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=98.73 E-value=1.6e-08 Score=81.64 Aligned_cols=132 Identities=15% Similarity=0.046 Sum_probs=89.4
Q ss_pred EEehhhHhHHHHHHhhccCCCceEEEEEeeeEe-CCEEEEEEEEeeccc--cC-chhhHhhHHHHHHHHHHHhhhCCCCC
Q psy4542 8 KVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVD-KGVVEVTNCFCVPHK--EY-DEMVEAELNYAQDMFEMNQKVNPSEL 83 (273)
Q Consensus 8 ~lhPlvll~I~dh~~r~~~~~~~v~G~LLG~~~-~~~veV~~sF~vp~~--~~-~~~~~id~~~~~~m~~l~k~v~p~~~ 83 (273)
.|.+.++..|..|..+. .+..++|.|+|..+ ++.+.|+..|++|.. .+ ...+.+|.+.+.+..+..++. ++.
T Consensus 2 ~i~~~~l~~i~~ha~~~--~p~E~cGlL~G~~~~~~~~~v~~~~p~~n~~~~~~~~~f~~dp~~~~~~~~~~~~~--g~~ 77 (153)
T 2kcq_A 2 KTTPDILDQIRVHGADA--YPEEGCGFLLGTVTDDGDNRVAALHRATNRRSEQRTRRYELTADDYRAADAAAQEQ--GLD 77 (153)
T ss_dssp BCCHHHHHHHHHHHHHH--TTSCCCEEEEEEECTTSCEEEEEEEESSCCCCCCCSCCSSCCCCSHHHHHHHHHHH--TCE
T ss_pred EeCHHHHHHHHHHHHhc--CCcceEEEEEEeeccCCCeEEEEEEECCCCCCCCCCcEEEECHHHHHHHHHHHHHC--CCe
Confidence 46678899999999875 57899999999987 788899999999875 32 334556644444444443332 689
Q ss_pred eEEeecCCC----CCCcccHHHHHHHHhhCCCcEEEEEcCCCCCCC-cceeEEEeeecCCCCCcccceeeeeceEEecC
Q psy4542 84 IVGWWATGD----EVTSQSSVIHDYYIRECKNPVHMTLDTNLKGPN-MGIKGYVHVPIGVPGGKSGIMFTQIPAEVICY 157 (273)
Q Consensus 84 iVGWY~~g~----~~~~~~~~i~~~~~~~~~~pi~L~~D~~~~~~~-l~ikay~~~~~~~~~~~~~~~f~~ip~~i~~~ 157 (273)
+||||+|.+ .++..|.. . + ..+..+++++.+.. ++ ..+++|+.... ...|.+.++.+...
T Consensus 78 ivG~yHSHP~~~~~PS~~D~~--~--~-~~~~~~~lIvs~~~--~~~~~~~af~~~~~-------~g~~~e~~i~v~~~ 142 (153)
T 2kcq_A 78 VVGVYHSHPDHPARPSATDLE--E--A-TFPGFTYVIVSVRD--GAPEALTAWALAPD-------RSEFHREDIVRPDP 142 (153)
T ss_dssp EEEEEEECSSSSSSCCHHHHH--T--C-CCTTSEEEEEEEET--TEEEEEEEEEECTT-------CSCEEEECCBCCCS
T ss_pred EEEEEeCCCCCCCCCCHHHHH--h--h-hcCCCeEEEEECCC--CCccEEEEEEEeCC-------CCcEEEEEEEEecC
Confidence 999999965 45555532 1 1 12456788886532 33 46999998421 12588888887543
No 9
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=98.00 E-value=3.9e-05 Score=59.35 Aligned_cols=105 Identities=15% Similarity=0.141 Sum_probs=66.9
Q ss_pred eEEEehhhHhHHHHHHhhccCCCceEEEEEeeeEeCCEEEEEEEEeeccccCchhhHhhHHHHHHHHHHHhhhCCCCCeE
Q psy4542 6 SIKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEAELNYAQDMFEMNQKVNPSELIV 85 (273)
Q Consensus 6 ~V~lhPlvll~I~dh~~r~~~~~~~v~G~LLG~~~~~~veV~~sF~vp~~~~~~~~~id~~~~~~m~~l~k~v~p~~~iV 85 (273)
.+.|...++..|.+|..+. .+..++|.|+|... .|+..|++| ...+. ....|...|.. .++.+|
T Consensus 3 ~v~i~~~~l~~i~~ha~~~--~P~E~cGlL~g~~~----~v~~~~~~p-~~~~~---~~~~f~~~~~~------~~~~iv 66 (124)
T 1oi0_A 3 SMKISRGLLKTILEAAKSA--HPDEFIALLSGSKD----VMDELIFLP-FVSGS---VSAVIHLDMLP------IGMKVF 66 (124)
T ss_dssp SCEECHHHHHHHHHHHHHH--TTSCCEEEEEESTT----EECEEEECC-CCC----------------------CCCEEE
T ss_pred EEEEcHHHHHHHHHHHHhc--CCCeeEEEEecccC----EEEEEEECC-CCCCC---cCceeeeeecc------CCCEEE
Confidence 4678889999999999875 57899999999863 788999999 54322 11122222221 579999
Q ss_pred EeecCCC----CCCcccHHHHHHHHhhCCCcEEEEEcCCCCCCCcceeEEEe
Q psy4542 86 GWWATGD----EVTSQSSVIHDYYIRECKNPVHMTLDTNLKGPNMGIKGYVH 133 (273)
Q Consensus 86 GWY~~g~----~~~~~~~~i~~~~~~~~~~pi~L~~D~~~~~~~l~ikay~~ 133 (273)
|||++.+ .++..|..... . ...+++++.+.. +.-.+++|..
T Consensus 67 G~~HSHP~~~~~PS~~D~~~~~----~-~~~~~lIvs~~~--~~~~~~~f~~ 111 (124)
T 1oi0_A 67 GTVHSHPSPSCRPSEEDLSLFT----R-FGKYHIIVCYPY--DENSWKCYNR 111 (124)
T ss_dssp EEEEEESSSCCSCCHHHHHHHH----H-SCSEEEEEETTC--CTTCEEEEET
T ss_pred EEEEECcCCCCccCHHHHHhhh----c-CCCEEEEEEccC--CCceEEEEec
Confidence 9999955 45555543221 2 345777776532 2346788775
No 10
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=96.68 E-value=0.0032 Score=54.61 Aligned_cols=110 Identities=17% Similarity=0.254 Sum_probs=74.8
Q ss_pred HHHHHHhhccCCCceEEEEEeeeEe---CCEEEEEEEEeeccccCchhhHh-----hHHHHHHHHHHHhhhCCCCCeEEe
Q psy4542 16 QIVDAFERRNLDSHRVIGTLLGTVD---KGVVEVTNCFCVPHKEYDEMVEA-----ELNYAQDMFEMNQKVNPSELIVGW 87 (273)
Q Consensus 16 ~I~dh~~r~~~~~~~v~G~LLG~~~---~~~veV~~sF~vp~~~~~~~~~i-----d~~~~~~m~~l~k~v~p~~~iVGW 87 (273)
+|++.+.....-+..++|.|.|... .+.-||+..--+|...+.+.+.. ..+| .-++.++||
T Consensus 46 nllkkFi~IADlrTq~~G~LyG~s~~d~~~vkeI~~ivipPQ~gt~~sv~~~~~~p~~~~-----------l~dLe~LGW 114 (273)
T 2p8r_A 46 NILKKFITISDLRTQIAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHEL-----------LRDFEPLGW 114 (273)
T ss_dssp HHHHHHHHTSCSSSCCEEEEEEECCTTCTTEEEEEEEECCSBEECSSCEECCSSCCCCTT-----------TTTSEEEEE
T ss_pred HHHHHHHHHhhccceEEEEEeccCCCCCCCeEEEEEEEECCccCCCceEECCCcCcchhh-----------hccccccce
Confidence 5556665554345689999999962 35677876656665544332211 1122 279999999
Q ss_pred ecCC----CCCCcccHHHHHHHHhh---C--CCcEEEEEcCCCCCCCcceeEEEeeecCC
Q psy4542 88 WATG----DEVTSQSSVIHDYYIRE---C--KNPVHMTLDTNLKGPNMGIKGYVHVPIGV 138 (273)
Q Consensus 88 Y~~g----~~~~~~~~~i~~~~~~~---~--~~pi~L~~D~~~~~~~l~ikay~~~~~~~ 138 (273)
=+|. +.+++.|+..|..|+.. - +.+|.+++-+. .|..++.||++.+.|.
T Consensus 115 IHTqp~e~~~LSs~Dl~tH~~~~~~~~~~~~~e~I~Ivcsft--pgs~sl~af~LT~~G~ 172 (273)
T 2p8r_A 115 MHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFT--PGSVSLTAYKLTPSGY 172 (273)
T ss_dssp EEEESSCCSSCCHHHHHHHHHHHHHCTTCCTTTCEEEEEEEE--TTEEEEEEEEECHHHH
T ss_pred EeeCCCCCCCcCHHHHHHHHHHHhcccccCCCceEEEEEecC--CCCceeEEEEcChHHh
Confidence 9994 46889999999988864 2 36788877543 3667899999987653
No 11
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.0056 Score=52.57 Aligned_cols=111 Identities=13% Similarity=0.178 Sum_probs=74.3
Q ss_pred HHHHHHhhccCCCceEEEEEeeeEe---CCEEEEEEEEeeccccCchhhHh-----hHHHHHHHHHHHhhhCCCCCeEEe
Q psy4542 16 QIVDAFERRNLDSHRVIGTLLGTVD---KGVVEVTNCFCVPHKEYDEMVEA-----ELNYAQDMFEMNQKVNPSELIVGW 87 (273)
Q Consensus 16 ~I~dh~~r~~~~~~~v~G~LLG~~~---~~~veV~~sF~vp~~~~~~~~~i-----d~~~~~~m~~l~k~v~p~~~iVGW 87 (273)
+|++.+.....-+..++|.|.|... .+.-||+.---+|...+.+.+.. ..+|.. --++.++||
T Consensus 45 nLlkkFi~IAD~~Tq~cG~LyG~~~~d~~~v~eI~~ivippQ~gt~~s~~~~~~~p~~~~~~---------l~dLe~LGW 115 (254)
T 2og4_A 45 NLLKKFIEISDVKIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPD---------TEGLELLGW 115 (254)
T ss_dssp HHHHHHHHTSCSSSCCEEEEEEEECSSCTTEEEEEEEECCCEEEETTEEEECCCCCCTTSTT---------CTTCEEEEE
T ss_pred HHHHHHHHHhhccceEEEEEEccCCCCCCCeEEEEEEEECCccCCCceEECCCcCccccchh---------hcCCEecce
Confidence 4555555553335689999999973 34667865555555443332211 011111 368999999
Q ss_pred ecCC----CCCCcccHHHHHHHHh-hCCCcEEEEEcCCCCCCCcceeEEEeeecC
Q psy4542 88 WATG----DEVTSQSSVIHDYYIR-ECKNPVHMTLDTNLKGPNMGIKGYVHVPIG 137 (273)
Q Consensus 88 Y~~g----~~~~~~~~~i~~~~~~-~~~~pi~L~~D~~~~~~~l~ikay~~~~~~ 137 (273)
=+|. +.+++.|+..|..|+. ..+.+|.+++-+. .|..++.||++.+.|
T Consensus 116 IHTqptq~~fLSs~Dl~tH~~~~~~~~~eaIaIvcsft--pgs~sl~af~LT~~G 168 (254)
T 2og4_A 116 IHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFST--PGSVSLSAYNLTDEG 168 (254)
T ss_dssp EEEESSCCSSCCHHHHHHHHHHHTTTCTTCEEEEEEEE--TTEEEEEEEEECHHH
T ss_pred EeeCCCCCcccCHHHHHHHHHHHHhcCCCeEEEEEecC--CCCceeEEEEcChhh
Confidence 9994 4788999999999887 4467888888554 366789999998765
No 12
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=94.96 E-value=0.016 Score=54.25 Aligned_cols=102 Identities=14% Similarity=0.173 Sum_probs=66.6
Q ss_pred CceEEEEEeeeEe---CCEEEEEEEEeeccccCchhhHhhHHHHHHHHHHHh--hhCCCCCeEEeecCC----CCCCccc
Q psy4542 28 SHRVIGTLLGTVD---KGVVEVTNCFCVPHKEYDEMVEAELNYAQDMFEMNQ--KVNPSELIVGWWATG----DEVTSQS 98 (273)
Q Consensus 28 ~~~v~G~LLG~~~---~~~veV~~sF~vp~~~~~~~~~id~~~~~~m~~l~k--~v~p~~~iVGWY~~g----~~~~~~~ 98 (273)
..+++|.|.|... .+..||+..--+|.-.+.+.+... + +..+. ..-.++.++||=+|. +.+++.|
T Consensus 368 rTQicGyLyG~sp~dn~nVkEI~cIVipPQ~Gt~~sv~lp-~-----lp~he~~~~l~dLe~LGWIHTqp~et~fLSs~D 441 (565)
T 3sbg_A 368 KIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQIS-N-----IPDIGDLPDTEGLELLGWIHTQTEELKFMAASE 441 (565)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEEEEECCCEEECSSCEEEC-C-----CCCCTTSTTCTTCEEEEEEEEESSCCSSCCHHH
T ss_pred cceeEEEEecCCCCCCCCeEEEEEEEECCccCCCceEECC-C-----CCccccccccccCEecceeeecCCcccccCHHH
Confidence 4679999999974 245677655555655544433221 0 00000 013689999999984 4688999
Q ss_pred HHHHHHHHhhC-CCcEEEEEcCCCCCCCcceeEEEeeecC
Q psy4542 99 SVIHDYYIREC-KNPVHMTLDTNLKGPNMGIKGYVHVPIG 137 (273)
Q Consensus 99 ~~i~~~~~~~~-~~pi~L~~D~~~~~~~l~ikay~~~~~~ 137 (273)
+..|..+...+ ++.|.+++. ++.|..++.||.+.+.|
T Consensus 442 l~THakl~~~n~~~~I~itvs--ftPGS~SLsAy~LT~eG 479 (565)
T 3sbg_A 442 VATHSKLFADKKRDCIDISIF--STPGSVSLSAYNLTDEG 479 (565)
T ss_dssp HHHHHHHHSSSCTTCEEEEEE--EETTEEEEEEEEECHHH
T ss_pred HHHHHHHHHhCCCCeEEEEEE--ecCCceEEEEEecCHhH
Confidence 99998876554 245655553 34588999999999876
No 13
>2rh2_A Dihydrofolate reductase type 2; folate metabolism, plasmid-encoded R67 DHFR, TMP-resistant DHFR, antibiotic resistance, methotrexate resistance; 0.96A {Escherichia coli} SCOP: b.34.4.1 PDB: 1vif_A* 1vie_A 2gqv_A 2rk1_A* 2rk2_A* 3sfm_A 2p4t_A*
Probab=73.98 E-value=1 Score=28.47 Aligned_cols=12 Identities=42% Similarity=0.819 Sum_probs=9.2
Q ss_pred CCCeEEeecCCC
Q psy4542 81 SELIVGWWATGD 92 (273)
Q Consensus 81 ~~~iVGWY~~g~ 92 (273)
+-+|||||.+.-
T Consensus 23 qg~ivgwyct~l 34 (62)
T 2rh2_A 23 QGQIVGWYCTNL 34 (62)
T ss_dssp EEEEEEEECCSS
T ss_pred cceEeEEEEccc
Confidence 347999999853
No 14
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=64.91 E-value=11 Score=20.80 Aligned_cols=28 Identities=14% Similarity=0.149 Sum_probs=21.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4542 178 PLSELTLVSEAADKLTVLIDHVLRYVDE 205 (273)
Q Consensus 178 ~~~~l~~~~~a~~~L~~~l~~i~~Yl~~ 205 (273)
+..++..+...+++|++|++++.+-+++
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456667777889999999998876654
No 15
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=24.09 E-value=1.6e+02 Score=21.62 Aligned_cols=34 Identities=9% Similarity=0.280 Sum_probs=22.7
Q ss_pred CCChHHHHHHHHHhhcC--CCCCHHHHHHHHHhhhh
Q psy4542 212 TPDNSIGRQLLDMVNSV--PSMTQEQFETMFNSNIK 245 (273)
Q Consensus 212 ~~d~~ilr~l~~~~~~l--p~~~~~~f~~~~~~~~~ 245 (273)
+..++++..+..++..| -++.+|+|...+....|
T Consensus 37 ~~spev~~~Vr~LVq~Ll~~~i~~EeFt~~Lq~~ln 72 (114)
T 2p6v_A 37 XQSTETAANVXELVQNLLDGXIEAEDFTSRLYRELN 72 (114)
T ss_dssp SSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTT
T ss_pred ccChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHc
Confidence 35778888888777766 35667887766654443
No 16
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A
Probab=23.96 E-value=1.5e+02 Score=19.40 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHhhcCCC
Q psy4542 198 HVLRYVDEVLANRITPDNSIGRQLLDMVNSVPS 230 (273)
Q Consensus 198 ~i~~Yl~~V~~g~~~~d~~ilr~l~~~~~~lp~ 230 (273)
.+.+++++...+.. ...+|...+..+|+.+|.
T Consensus 10 ~~v~~i~~~l~~~~-t~~~I~~~l~~~C~~lp~ 41 (80)
T 3bqp_A 10 KLVGYLDRNLEKNS-TKQEILAALEKGCSFLPD 41 (80)
T ss_dssp HHHHHHHHHSCTTC-CHHHHHHHHHHHGGGSCG
T ss_pred HHHHHHHHHHHccc-HHHHHHHHHHHHHHhCCC
Confidence 35566666655442 345899999999999996
Done!