Your job contains 1 sequence.
>psy4542
MSLNVSIKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEM
VEAELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTN
LKGPNMGIKGYVHVPIGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAVQPLS
ELTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFETMF
NSNIKDLLMIMTLSQLTKTQLLLNEKLTLLTSL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4542
(273 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0037270 - symbol:CG9769 species:7227 "Drosophila m... 875 1.4e-87 1
UNIPROTKB|E1C050 - symbol:EIF3F "Uncharacterized protein"... 636 3.0e-62 1
UNIPROTKB|E1BLZ8 - symbol:EIF3F "Uncharacterized protein"... 610 1.7e-59 1
UNIPROTKB|B3KSH1 - symbol:EIF3F "HCG1784554, isoform CRA_... 607 3.5e-59 1
UNIPROTKB|O00303 - symbol:EIF3F "Eukaryotic translation i... 607 3.5e-59 1
UNIPROTKB|A5A6I3 - symbol:EIF3F "Eukaryotic translation i... 607 3.5e-59 1
UNIPROTKB|Q4R5B8 - symbol:EIF3F "Eukaryotic translation i... 607 3.5e-59 1
MGI|MGI:1913335 - symbol:Eif3f "eukaryotic translation in... 604 7.3e-59 1
FB|FBgn0033069 - symbol:CG8335 species:7227 "Drosophila m... 528 8.3e-51 1
DICTYBASE|DDB_G0293254 - symbol:eif3F "eukaryotic transla... 432 1.2e-40 1
TAIR|locus:2061206 - symbol:EIF2 "AT2G39990" species:3702... 426 5.3e-40 1
UNIPROTKB|B4DEW9 - symbol:EIF3F "Eukaryotic translation i... 422 1.4e-39 1
ASPGD|ASPL0000055955 - symbol:AN10182 species:162425 "Eme... 335 2.3e-30 1
POMBASE|SPBC4C3.07 - symbol:SPBC4C3.07 "translation initi... 322 5.6e-29 1
TAIR|locus:2074653 - symbol:MEE34 "AT3G11270" species:370... 288 2.2e-25 1
TAIR|locus:2166449 - symbol:RPN8A "AT5G05780" species:370... 285 4.6e-25 1
WB|WBGene00001229 - symbol:eif-3.F species:6239 "Caenorha... 278 2.6e-24 1
FB|FBgn0002787 - symbol:Rpn8 "Regulatory particle non-ATP... 277 3.3e-24 1
DICTYBASE|DDB_G0279633 - symbol:psmD7 "26S proteasome non... 273 8.7e-24 1
UNIPROTKB|P51665 - symbol:PSMD7 "26S proteasome non-ATPas... 262 1.3e-22 1
UNIPROTKB|Q3ZBD0 - symbol:PSMD7 "26S proteasome non-ATPas... 261 1.6e-22 1
UNIPROTKB|A4R0E5 - symbol:MGG_10653 "Eukaryotic translati... 261 1.6e-22 1
MGI|MGI:1351511 - symbol:Psmd7 "proteasome (prosome, macr... 261 1.6e-22 1
RGD|1306902 - symbol:Psmd7 "proteasome (prosome, macropai... 260 2.1e-22 1
ZFIN|ZDB-GENE-030131-5541 - symbol:psmd7 "proteasome (pro... 259 2.6e-22 1
WB|WBGene00004464 - symbol:rpn-8 species:6239 "Caenorhabd... 240 2.9e-20 1
UNIPROTKB|O61792 - symbol:rpn-8 "Protein RPN-8" species:6... 240 2.9e-20 1
SGD|S000005787 - symbol:RPN8 "non-ATPase regulatory subun... 227 6.5e-19 1
POMBASE|SPCC1682.10 - symbol:rpn8 "19S proteasome regulat... 226 8.3e-19 1
CGD|CAL0002371 - symbol:RPN8 species:5476 "Candida albica... 220 3.6e-18 1
UNIPROTKB|Q59YL2 - symbol:RPN8 "Likely 26S proteasome reg... 220 3.6e-18 1
UNIPROTKB|G4NCJ9 - symbol:MGG_01059 "26S proteasome regul... 220 6.2e-18 1
ASPGD|ASPL0000029143 - symbol:AN5121 species:162425 "Emer... 207 1.7e-16 1
DICTYBASE|DDB_G0293180 - symbol:csn6 "Mov34/MPN/PAD-1 fam... 200 5.2e-16 1
CGD|CAL0000353 - symbol:orf19.4283 species:5476 "Candida ... 159 2.2e-11 2
UNIPROTKB|Q5AG96 - symbol:CaO19.11759 "Potential translat... 159 2.2e-11 2
UNIPROTKB|B4DXI8 - symbol:PSMD7 "26S proteasome non-ATPas... 163 9.2e-11 1
ZFIN|ZDB-GENE-050417-289 - symbol:cops6 "COP9 constitutiv... 164 1.9e-10 1
UNIPROTKB|A7TX81 - symbol:COPS6 "COP9 signalosome complex... 153 6.7e-09 1
UNIPROTKB|F1MG10 - symbol:COPS6 "COP9 signalosome complex... 153 6.8e-09 1
MGI|MGI:1349439 - symbol:Cops6 "COP9 (constitutive photom... 153 6.8e-09 1
UNIPROTKB|E7EM64 - symbol:COPS6 "COP9 signalosome complex... 153 6.9e-09 1
UNIPROTKB|Q7L5N1 - symbol:COPS6 "COP9 signalosome complex... 153 6.9e-09 1
UNIPROTKB|A6QQ21 - symbol:COPS6 "COP9 signalosome complex... 152 8.9e-09 1
RGD|1309919 - symbol:Cops6 "COP9 signalosome subunit 6" s... 152 1.0e-08 1
TAIR|locus:2131493 - symbol:CSN6B "AT4G26430" species:370... 134 5.0e-08 2
TAIR|locus:2177601 - symbol:CSN6A "AT5G56280" species:370... 136 7.1e-08 2
FB|FBgn0028837 - symbol:CSN6 "COP9 complex homolog subuni... 138 5.1e-07 1
ZFIN|ZDB-GENE-040808-19 - symbol:eif3ha "eukaryotic trans... 120 6.4e-05 1
ZFIN|ZDB-GENE-051030-42 - symbol:eif3hb "eukaryotic trans... 118 0.00011 1
UNIPROTKB|Q5PPY6 - symbol:eif3h "Eukaryotic translation i... 114 0.00032 1
UNIPROTKB|Q6P381 - symbol:eif3h "Eukaryotic translation i... 114 0.00032 1
UNIPROTKB|B5RI54 - symbol:eif3h "Eukaryotic translation i... 114 0.00033 1
UNIPROTKB|Q56JZ5 - symbol:EIF3H "Eukaryotic translation i... 113 0.00045 1
UNIPROTKB|O15372 - symbol:EIF3H "Eukaryotic translation i... 113 0.00045 1
MGI|MGI:1915385 - symbol:Eif3h "eukaryotic translation in... 113 0.00045 1
RGD|735178 - symbol:Eif3h "eukaryotic translation initiat... 113 0.00045 1
UNIPROTKB|B3KS98 - symbol:EIF3S3 "Eukaryotic translation ... 113 0.00048 1
TAIR|locus:2196469 - symbol:TIF3H1 "AT1G10840" species:37... 111 0.00071 1
UNIPROTKB|Q5ZLE6 - symbol:EIF3H "Eukaryotic translation i... 111 0.00075 1
UNIPROTKB|B5FY35 - symbol:EIF3H "Eukaryotic translation i... 111 0.00075 1
FB|FBgn0022023 - symbol:eIF-3p40 "Eukaryotic initiation f... 110 0.00093 1
>FB|FBgn0037270 [details] [associations]
symbol:CG9769 species:7227 "Drosophila melanogaster"
[GO:0005852 "eukaryotic translation initiation factor 3 complex"
evidence=ISS] [GO:0006413 "translational initiation" evidence=ISS]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0048102 "autophagic cell death" evidence=IEP] [GO:0035071
"salivary gland cell autophagic cell death" evidence=IEP]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 EMBL:AE014297
GO:GO:0035071 GO:GO:0003743 eggNOG:COG1310 GO:GO:0005852
InterPro:IPR024969 Pfam:PF13012 GeneTree:ENSGT00530000063075
EMBL:AY118972 RefSeq:NP_649489.1 UniGene:Dm.11029
ProteinModelPortal:Q9VN50 SMR:Q9VN50 IntAct:Q9VN50 MINT:MINT-891663
STRING:Q9VN50 MEROPS:M67.975 PaxDb:Q9VN50 PRIDE:Q9VN50
EnsemblMetazoa:FBtr0078892 GeneID:40587 KEGG:dme:Dmel_CG9769
UCSC:CG9769-RA FlyBase:FBgn0037270 InParanoid:Q9VN50 KO:K03249
OMA:HPVVLFQ OrthoDB:EOG43TXBB PhylomeDB:Q9VN50 ChiTaRS:CG9769
GenomeRNAi:40587 NextBio:819523 Bgee:Q9VN50 HAMAP:MF_03005
Uniprot:Q9VN50
Length = 280
Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
Identities = 155/256 (60%), Positives = 212/256 (82%)
Query: 2 SLNVSIKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMV 61
+LN++++VHPVVLFQ+VDAFERRN DSHRVIGTLLG+VDKGVVEVTNCFCVPHKE+D+ V
Sbjct: 3 ALNLTVRVHPVVLFQVVDAFERRNADSHRVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQV 62
Query: 62 EAELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTNL 121
EAEL+YA DM+++N+KVN +E +VGWWATG++VT+ SSVIH+YY REC NPVH+T+DT+L
Sbjct: 63 EAELSYALDMYDLNRKVNSNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSL 122
Query: 122 KGPNMGIKGYVHVPIGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSI------KQGA 175
+G MG++ YV + +GVPGGKSG MFT IP E+ Y E GL+LL K++ +
Sbjct: 123 QGGRMGLRAYVCIQLGVPGGKSGCMFTPIPVELTSYEPETFGLKLLQKTVGVSPAHRPKT 182
Query: 176 VQPLSELTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQ 235
V P+ +L +SEA+ KL L+D +L+YVD+V+A+++TPDN++GRQLLD+++SVP MT EQ
Sbjct: 183 VPPMLDLAQISEASTKLQSLLDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMTHEQ 242
Query: 236 FETMFNSNIKDLLMIM 251
F MFN+N+++LL+++
Sbjct: 243 FTQMFNANVRNLLLVI 258
>UNIPROTKB|E1C050 [details] [associations]
symbol:EIF3F "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0005852 "eukaryotic translation initiation factor
3 complex" evidence=IEA] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 GO:GO:0003743 GO:GO:0005852 InterPro:IPR024969
Pfam:PF13012 GeneTree:ENSGT00530000063075 KO:K03249 OMA:HPVVLFQ
CTD:8665 EMBL:AC140789 IPI:IPI00578336 RefSeq:XP_421624.1
PRIDE:E1C050 Ensembl:ENSGALT00000008544 GeneID:423748
KEGG:gga:423748 NextBio:20826172 Uniprot:E1C050
Length = 332
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 118/246 (47%), Positives = 176/246 (71%)
Query: 7 IKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEAELN 66
+++HPVVL IVD+FERRN + RVIGTLLGTVDK VEVTNCF VPH E ++ V ++
Sbjct: 67 VRLHPVVLASIVDSFERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 126
Query: 67 YAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTNLKGPNM 126
+A++M+E+++KV+PSE+I+GW+ATG ++T S +IH+YY RE NP+H+T+DT+L+ M
Sbjct: 127 FAKNMYELHKKVSPSEIILGWYATGHDITEHSVLIHEYYSREAHNPIHLTVDTSLQNSRM 186
Query: 127 GIKGYVHVPIGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKS-IKQGAVQPLS-ELTL 184
IK YV P+GVPG G+MFT + + + Y++E G+ L+ K+ V LS +L
Sbjct: 187 SIKAYVSAPMGVPGKTMGVMFTPLTVKYVYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ 246
Query: 185 VSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFETMFNSNI 244
V A+ ++ + VL+Y ++VL+ ++ DN++GR L+D++N VP ++ E FETM NSNI
Sbjct: 247 VGSASARIQDTLGMVLQYAEDVLSGKVAADNTVGRFLMDLINQVPKISPEDFETMLNSNI 306
Query: 245 KDLLMI 250
DLLM+
Sbjct: 307 NDLLMV 312
>UNIPROTKB|E1BLZ8 [details] [associations]
symbol:EIF3F "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005852 "eukaryotic translation initiation factor 3
complex" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 GO:GO:0003743 GO:GO:0005852 InterPro:IPR024969
Pfam:PF13012 GeneTree:ENSGT00530000063075 EMBL:DAAA02040761
IPI:IPI00837929 Ensembl:ENSBTAT00000049219 OMA:HHETMYE
Uniprot:E1BLZ8
Length = 384
Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
Identities = 115/246 (46%), Positives = 173/246 (70%)
Query: 7 IKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEAELN 66
+++HPV+L IVD++ERRN + RVIGTLLGTVDK VEVTNCF VPH E ++ V ++
Sbjct: 119 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 178
Query: 67 YAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTNLKGPNM 126
+A++M+E+++KV+P+ELI+GW+ATG ++T S +IH+YY RE NP+H+T+DT+L+ M
Sbjct: 179 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRM 238
Query: 127 GIKGYVHVPIGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKS-IKQGAVQPLS-ELTL 184
IK YV +GVPG G+MFT + + Y++E G+ L+ K+ V LS +L
Sbjct: 239 SIKAYVSTLMGVPGRTMGVMFTPLTVKYTYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ 298
Query: 185 VSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFETMFNSNI 244
V A+ ++ + VL+Y ++VL+ +++ DN++GR L+ +VN VP + E FETM NSNI
Sbjct: 299 VGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPEDFETMLNSNI 358
Query: 245 KDLLMI 250
DLLM+
Sbjct: 359 NDLLMV 364
>UNIPROTKB|B3KSH1 [details] [associations]
symbol:EIF3F "HCG1784554, isoform CRA_a" species:9606 "Homo
sapiens" [GO:0003743 "translation initiation factor activity"
evidence=IEA] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
EMBL:CH471064 GO:GO:0003743 InterPro:IPR024969 Pfam:PF13012
OMA:HPVVLFQ HOGENOM:HOG000241154 UniGene:Hs.516023 HGNC:HGNC:3275
HOVERGEN:HBG107843 EMBL:AC044810 EMBL:AC116456 EMBL:AK093511
IPI:IPI00654777 SMR:B3KSH1 IntAct:B3KSH1 STRING:B3KSH1
Ensembl:ENST00000537635 Uniprot:B3KSH1
Length = 372
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 114/246 (46%), Positives = 173/246 (70%)
Query: 7 IKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEAELN 66
+++HPV+L IVD++ERRN + RVIGTLLGTVDK VEVTNCF VPH E ++ V ++
Sbjct: 107 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 166
Query: 67 YAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTNLKGPNM 126
+A++M+E+++KV+P+ELI+GW+ATG ++T S +IH+YY RE NP+H+T+DT+L+ M
Sbjct: 167 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRM 226
Query: 127 GIKGYVHVPIGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKS-IKQGAVQPLS-ELTL 184
IK YV +GVPG G+MFT + + Y++E G+ L+ K+ V LS +L
Sbjct: 227 SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ 286
Query: 185 VSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFETMFNSNI 244
V A+ ++ + VL+Y ++VL+ +++ DN++GR L+ +VN VP + + FETM NSNI
Sbjct: 287 VGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNI 346
Query: 245 KDLLMI 250
DLLM+
Sbjct: 347 NDLLMV 352
>UNIPROTKB|O00303 [details] [associations]
symbol:EIF3F "Eukaryotic translation initiation factor 3
subunit F" species:9606 "Homo sapiens" [GO:0006508 "proteolysis"
evidence=IEA] [GO:0008234 "cysteine-type peptidase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005852 "eukaryotic translation initiation factor 3 complex"
evidence=IDA;TAS] [GO:0003743 "translation initiation factor
activity" evidence=IC;IDA;TAS] [GO:0006413 "translational
initiation" evidence=IC;IDA;TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006412 "translation" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0044267 "cellular protein
metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_17015 InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
GO:GO:0005829 GO:GO:0008234 GO:GO:0006508 GO:GO:0003743
eggNOG:COG1310 GO:GO:0005852 InterPro:IPR024969 Pfam:PF13012
KO:K03249 HAMAP:MF_03005 Reactome:REACT_1762 HOGENOM:HOG000241154
EMBL:U94855 EMBL:AK095574 EMBL:AK289637 EMBL:AK291354 EMBL:BT006894
EMBL:CR456959 EMBL:BC000490 IPI:IPI00941255 RefSeq:NP_003745.1
UniGene:Hs.516023 ProteinModelPortal:O00303 SMR:O00303
DIP:DIP-35580N IntAct:O00303 MINT:MINT-5000761 STRING:O00303
MEROPS:M67.974 PhosphoSite:O00303 PaxDb:O00303 PRIDE:O00303
DNASU:8665 Ensembl:ENST00000309828 Ensembl:ENST00000533626
GeneID:8665 KEGG:hsa:8665 UCSC:uc001mfw.3 CTD:8665
GeneCards:GC11P007966 HGNC:HGNC:3275 HPA:HPA049250 MIM:603914
neXtProt:NX_O00303 PharmGKB:PA162384806 HOVERGEN:HBG107843
InParanoid:O00303 OrthoDB:EOG44XJHN PhylomeDB:O00303
GenomeRNAi:8665 NextBio:32503 ArrayExpress:O00303 Bgee:O00303
CleanEx:HS_EIF3F Genevestigator:O00303 GermOnline:ENSG00000175390
Uniprot:O00303
Length = 357
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 114/246 (46%), Positives = 173/246 (70%)
Query: 7 IKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEAELN 66
+++HPV+L IVD++ERRN + RVIGTLLGTVDK VEVTNCF VPH E ++ V ++
Sbjct: 92 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 151
Query: 67 YAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTNLKGPNM 126
+A++M+E+++KV+P+ELI+GW+ATG ++T S +IH+YY RE NP+H+T+DT+L+ M
Sbjct: 152 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRM 211
Query: 127 GIKGYVHVPIGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKS-IKQGAVQPLS-ELTL 184
IK YV +GVPG G+MFT + + Y++E G+ L+ K+ V LS +L
Sbjct: 212 SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ 271
Query: 185 VSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFETMFNSNI 244
V A+ ++ + VL+Y ++VL+ +++ DN++GR L+ +VN VP + + FETM NSNI
Sbjct: 272 VGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNI 331
Query: 245 KDLLMI 250
DLLM+
Sbjct: 332 NDLLMV 337
>UNIPROTKB|A5A6I3 [details] [associations]
symbol:EIF3F "Eukaryotic translation initiation factor 3
subunit F" species:9598 "Pan troglodytes" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 GO:GO:0006413 GO:GO:0008234
GO:GO:0006508 GO:GO:0003743 eggNOG:COG1310 GO:GO:0005852
InterPro:IPR024969 Pfam:PF13012 KO:K03249 HAMAP:MF_03005
HOGENOM:HOG000241154 CTD:8665 HOVERGEN:HBG107843 OrthoDB:EOG44XJHN
EMBL:AB222111 RefSeq:NP_001104282.1 UniGene:Ptr.2608
ProteinModelPortal:A5A6I3 STRING:A5A6I3 GeneID:451007
KEGG:ptr:451007 InParanoid:A5A6I3 NextBio:20833681 Uniprot:A5A6I3
Length = 361
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 114/246 (46%), Positives = 173/246 (70%)
Query: 7 IKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEAELN 66
+++HPV+L IVD++ERRN + RVIGTLLGTVDK VEVTNCF VPH E ++ V ++
Sbjct: 96 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 155
Query: 67 YAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTNLKGPNM 126
+A++M+E+++KV+P+ELI+GW+ATG ++T S +IH+YY RE NP+H+T+DT+L+ M
Sbjct: 156 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRM 215
Query: 127 GIKGYVHVPIGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKS-IKQGAVQPLS-ELTL 184
IK YV +GVPG G+MFT + + Y++E G+ L+ K+ V LS +L
Sbjct: 216 SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ 275
Query: 185 VSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFETMFNSNI 244
V A+ ++ + VL+Y ++VL+ +++ DN++GR L+ +VN VP + + FETM NSNI
Sbjct: 276 VGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNI 335
Query: 245 KDLLMI 250
DLLM+
Sbjct: 336 NDLLMV 341
>UNIPROTKB|Q4R5B8 [details] [associations]
symbol:EIF3F "Eukaryotic translation initiation factor 3
subunit F" species:9541 "Macaca fascicularis" [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0006413
GO:GO:0008234 GO:GO:0006508 GO:GO:0003743 GO:GO:0005852
InterPro:IPR024969 Pfam:PF13012 HAMAP:MF_03005 MEROPS:M67.974
HOVERGEN:HBG107843 OrthoDB:EOG44XJHN EMBL:AB169626
ProteinModelPortal:Q4R5B8 Uniprot:Q4R5B8
Length = 361
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 114/246 (46%), Positives = 173/246 (70%)
Query: 7 IKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEAELN 66
+++HPV+L IVD++ERRN + RVIGTLLGTVDK VEVTNCF VPH E ++ V ++
Sbjct: 96 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 155
Query: 67 YAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTNLKGPNM 126
+A++M+E+++KV+P+ELI+GW+ATG ++T S +IH+YY RE NP+H+T+DT+L+ M
Sbjct: 156 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRM 215
Query: 127 GIKGYVHVPIGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKS-IKQGAVQPLS-ELTL 184
IK YV +GVPG G+MFT + + Y++E G+ L+ K+ V LS +L
Sbjct: 216 SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ 275
Query: 185 VSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFETMFNSNI 244
V A+ ++ + VL+Y ++VL+ +++ DN++GR L+ +VN VP + + FETM NSNI
Sbjct: 276 VGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNI 335
Query: 245 KDLLMI 250
DLLM+
Sbjct: 336 NDLLMV 341
>MGI|MGI:1913335 [details] [associations]
symbol:Eif3f "eukaryotic translation initiation factor 3,
subunit F" species:10090 "Mus musculus" [GO:0003743 "translation
initiation factor activity" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005852 "eukaryotic translation initiation factor
3 complex" evidence=ISO;IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0006413 "translational initiation"
evidence=ISO;IDA] [GO:0006508 "proteolysis" evidence=IEA]
[GO:0008233 "peptidase activity" evidence=IEA] [GO:0008234
"cysteine-type peptidase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 MGI:MGI:1913335 GO:GO:0006413 GO:GO:0008234
GO:GO:0006508 EMBL:CH466531 GO:GO:0003743 eggNOG:COG1310
GO:GO:0005852 InterPro:IPR024969 Pfam:PF13012
GeneTree:ENSGT00530000063075 KO:K03249 OMA:HPVVLFQ HAMAP:MF_03005
HOGENOM:HOG000241154 MEROPS:M67.974 CTD:8665 HOVERGEN:HBG107843
OrthoDB:EOG44XJHN EMBL:AK002778 EMBL:BC083190 IPI:IPI00120914
RefSeq:NP_079620.2 UniGene:Mm.182962 ProteinModelPortal:Q9DCH4
SMR:Q9DCH4 DIP:DIP-42766N IntAct:Q9DCH4 MINT:MINT-1899046
STRING:Q9DCH4 PhosphoSite:Q9DCH4 PaxDb:Q9DCH4 PRIDE:Q9DCH4
Ensembl:ENSMUST00000033342 GeneID:66085 KEGG:mmu:66085
InParanoid:Q5XJV3 ChiTaRS:EIF3F NextBio:320584 Bgee:Q9DCH4
Genevestigator:Q9DCH4 GermOnline:ENSMUSG00000031029 Uniprot:Q9DCH4
Length = 361
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 114/246 (46%), Positives = 172/246 (69%)
Query: 7 IKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEAELN 66
+++HPV+L IVD++ERRN + RVIGTLLGTVDK VEVTNCF VPH E ++ V ++
Sbjct: 96 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 155
Query: 67 YAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTNLKGPNM 126
+A++M+E+++KV+P+ELI+GW+ATG ++T S +IH+YY RE NP+H+T+DT L+ M
Sbjct: 156 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTGLQHGRM 215
Query: 127 GIKGYVHVPIGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKS-IKQGAVQPLS-ELTL 184
IK YV +GVPG G+MFT + + Y++E G+ L+ K+ V LS +L
Sbjct: 216 SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQ 275
Query: 185 VSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFETMFNSNI 244
V A+ ++ + VL+Y ++VL+ +++ DN++GR L+ +VN VP + + FETM NSNI
Sbjct: 276 VGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNI 335
Query: 245 KDLLMI 250
DLLM+
Sbjct: 336 NDLLMV 341
>FB|FBgn0033069 [details] [associations]
symbol:CG8335 species:7227 "Drosophila melanogaster"
[GO:0006413 "translational initiation" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=ISS]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 EMBL:AE013599
GO:GO:0003743 eggNOG:COG1310 GO:GO:0005852 InterPro:IPR024969
Pfam:PF13012 HAMAP:MF_03005 RefSeq:NP_610210.2
ProteinModelPortal:A1Z6K7 SMR:A1Z6K7 IntAct:A1Z6K7 STRING:A1Z6K7
GeneID:35547 KEGG:dme:Dmel_CG8335 UCSC:CG8335-RA
FlyBase:FBgn0033069 InParanoid:A1Z6K7 OMA:ITLSTMI OrthoDB:EOG41G1M1
GenomeRNAi:35547 NextBio:793971 Bgee:A1Z6K7 Uniprot:A1Z6K7
Length = 285
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 100/256 (39%), Positives = 162/256 (63%)
Query: 2 SLNVSIKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDE-- 59
S+ + + P+V FQI+DA++RR ++V+GTLLG +G +E+TNCF VPHKE+ E
Sbjct: 6 SMRAKVYLKPLVFFQIIDAYDRRPKGDNQVMGTLLGRNKEGHIEITNCFTVPHKEHSENK 65
Query: 60 MVEAELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIREC--KNPVHMTL 117
++ ++ YA ++ E+N P+E ++GW+ TG V+ +S+IHDYY+REC P+H+ +
Sbjct: 66 RIDLDMAYASEVLELNMFAYPNERVLGWFCTGKSVSRSASLIHDYYVRECCEGQPLHLLV 125
Query: 118 DTNLKGPNMGIKGYVHVPIGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAVQ 177
D LK + + Y V +GVPGG G+MF+ +P E+ NS++ LR + K +Q A +
Sbjct: 126 DAALKNQRLSTRLYCAVEMGVPGGTKGLMFSLVPLEISNENSDLVALRCIEKQSQQQASK 185
Query: 178 PLS----ELTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQ 233
+ EL V +A + +D VLRY+++VLA + PDN +GR L + +VP +
Sbjct: 186 QMERFVPELAQVVDATRDMQHRLDLVLRYINDVLARKKKPDNVVGRSLYAALTAVPLLDS 245
Query: 234 EQFETMFNSNIKDLLM 249
++F MFN+N++D+LM
Sbjct: 246 DKFRVMFNTNLRDMLM 261
>DICTYBASE|DDB_G0293254 [details] [associations]
symbol:eif3F "eukaryotic translation initiation
factor 3 (eIF3) subunit 5" species:44689 "Dictyostelium discoideum"
[GO:0005852 "eukaryotic translation initiation factor 3 complex"
evidence=ISS] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
dictyBase:DDB_G0293254 GenomeReviews:CM000155_GR EMBL:AAFI02000200
GO:GO:0003743 eggNOG:COG1310 GO:GO:0005852 InterPro:IPR024969
Pfam:PF13012 KO:K03249 OMA:HPVVLFQ HAMAP:MF_03005
RefSeq:XP_629217.1 ProteinModelPortal:Q54C49 STRING:Q54C49
PRIDE:Q54C49 EnsemblProtists:DDB0233924 GeneID:8629099
KEGG:ddi:DDB_G0293254 ProtClustDB:CLSZ2429292 Uniprot:Q54C49
Length = 284
Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 89/251 (35%), Positives = 148/251 (58%)
Query: 5 VSIKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEAE 64
V++KVHPVV+F I+D + RRN+ RVIGTLLG + GV+E+ NCF V H E E + E
Sbjct: 13 VTVKVHPVVIFNILDHYIRRNVGQDRVIGTLLGFNNDGVLEIRNCFPVVHSE-TEQIAVE 71
Query: 65 LNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKN--PVHMTLDTNLK 122
+ Y + M +++ K +P E I+GW+ATG+++ S I+++Y E N P+H+T+DT L
Sbjct: 72 MEYQRKMLDLHLKSSPREPIIGWYATGNDINENSVHINNFYRDEMGNSTPIHLTVDTGLT 131
Query: 123 GPNMGIKGYVHVPIGV-PGGKSGIMFTQIPAEVICYNSEVTGLRLLHKS-IKQGAVQPLS 180
MGI Y+ + + P G F+Q+P E++ + +E GL + ++ Q + LS
Sbjct: 132 NDTMGIHAYMAHNLSLNPESSLGSYFSQLPLEILTFEAENAGLESIAQTKYDQQSTSLLS 191
Query: 181 ELTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFETMF 240
EL + + KL +++ + Y++ V I D +GR L + ++P + + +
Sbjct: 192 ELESLQGSLTKLDEMLESITSYIESVEKGEIQGDPRLGRFLAKTIQALPKANAQVMDKVI 251
Query: 241 NSNIKDLLMIM 251
N+++KDLLMI+
Sbjct: 252 NNSVKDLLMIV 262
>TAIR|locus:2061206 [details] [associations]
symbol:EIF2 "AT2G39990" species:3702 "Arabidopsis
thaliana" [GO:0003743 "translation initiation factor activity"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISM;IDA] [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
[GO:0009790 "embryo development" evidence=IMP] [GO:0009846 "pollen
germination" evidence=IMP] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0005829
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0016020
GO:GO:0009790 GO:GO:0003743 eggNOG:COG1310 GO:GO:0009846
EMBL:AF002109 InterPro:IPR024969 Pfam:PF13012 KO:K03249 OMA:HPVVLFQ
HAMAP:MF_03005 EMBL:U54561 EMBL:AY045824 EMBL:AY091363
IPI:IPI00527838 PIR:H84823 RefSeq:NP_181528.1 UniGene:At.10968
ProteinModelPortal:O04202 SMR:O04202 STRING:O04202 PaxDb:O04202
PRIDE:O04202 EnsemblPlants:AT2G39990.1 GeneID:818587
KEGG:ath:AT2G39990 GeneFarm:2126 TAIR:At2g39990
HOGENOM:HOG000241154 InParanoid:O04202 PhylomeDB:O04202
ProtClustDB:CLSN2683386 Genevestigator:O04202 GermOnline:AT2G39990
Uniprot:O04202
Length = 293
Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
Identities = 86/248 (34%), Positives = 142/248 (57%)
Query: 5 VSIKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTV-DKGVVEVTNCFCVPHKEYDEMVEA 63
++ ++HP+V+F + D F RR + RVIGTLLG++ G V++ N + VPH E + V
Sbjct: 26 LTARIHPLVIFNVCDCFVRRPDSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAV 85
Query: 64 ELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTNLKG 123
+++Y +M + KVN E IVGW++TG V SS+IHD+Y RE NP+H+T+DT
Sbjct: 86 DIDYHHNMLASHLKVNSKETIVGWYSTGAGVNGGSSLIHDFYAREVPNPIHLTVDTGFTN 145
Query: 124 PNMGIKGYVHVPIGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAVQPLSELT 183
IK +V + + + F +IP ++ ++E G +L + L +
Sbjct: 146 GEGTIKAFVSSNLSLGDRQLVAHFQEIPVDLRMVDAERVGFDVLKATSVDKLPNDLEGME 205
Query: 184 LVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFETMFNSN 243
L E +L LI+ V +YVD V+ +I PDN+IGR + D V S+P + + F+ + N +
Sbjct: 206 LTME---RLLTLINDVYKYVDSVVGGQIAPDNNIGRFIADAVASLPKLPPQVFDNLVNDS 262
Query: 244 IKDLLMIM 251
++D L+++
Sbjct: 263 LQDQLLLL 270
>UNIPROTKB|B4DEW9 [details] [associations]
symbol:EIF3F "Eukaryotic translation initiation factor 3
subunit F" species:9606 "Homo sapiens" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0003743
GO:GO:0005852 InterPro:IPR024969 Pfam:PF13012 UniGene:Hs.516023
HGNC:HGNC:3275 HOVERGEN:HBG107843 EMBL:AC044810 EMBL:AC116456
EMBL:AK293826 IPI:IPI01013021 ProteinModelPortal:B4DEW9 SMR:B4DEW9
STRING:B4DEW9 PRIDE:B4DEW9 Ensembl:ENST00000449102
ArrayExpress:B4DEW9 Bgee:B4DEW9 Uniprot:B4DEW9
Length = 208
Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 79/188 (42%), Positives = 128/188 (68%)
Query: 65 LNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTNLKGP 124
+ +A++M+E+++KV+P+ELI+GW+ATG ++T S +IH+YY RE NP+H+T+DT+L+
Sbjct: 1 MEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNG 60
Query: 125 NMGIKGYVHVPIGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKS-IKQGAVQPLS-EL 182
M IK YV +GVPG G+MFT + + Y++E G+ L+ K+ V LS +L
Sbjct: 61 RMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDL 120
Query: 183 TLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFETMFNS 242
V A+ ++ + VL+Y ++VL+ +++ DN++GR L+ +VN VP + + FETM NS
Sbjct: 121 QQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNS 180
Query: 243 NIKDLLMI 250
NI DLLM+
Sbjct: 181 NINDLLMV 188
>ASPGD|ASPL0000055955 [details] [associations]
symbol:AN10182 species:162425 "Emericella nidulans"
[GO:0006413 "translational initiation" evidence=IEA] [GO:0016282
"eukaryotic 43S preinitiation complex" evidence=IEA] [GO:0071541
"eukaryotic translation initiation factor 3 complex, eIF3m"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0071540
"eukaryotic translation initiation factor 3 complex, eIF3e"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 EMBL:BN001308 GO:GO:0003743 InterPro:IPR024969
Pfam:PF13012 OMA:HPVVLFQ HOGENOM:HOG000241154
EnsemblFungi:CADANIAT00001258 Uniprot:C8VRX6
Length = 345
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 76/257 (29%), Positives = 141/257 (54%)
Query: 5 VSIKVHPVVLFQIVDAFERRNLDSHRVIGTLLGT-VDKGV-VEVTNCFCVPHKEYDEMVE 62
+++ + P LF I+D RRN D RVIGTLLGT + G VE+ + F V H E + VE
Sbjct: 28 LNVVIQPQALFSILDHSLRRNADQERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTDQVE 87
Query: 63 AELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRE----CKNP-VHMTL 117
++ Y + M ++ K NP E++VGW+AT E+ + S++I ++Y + +P VH+T+
Sbjct: 88 VDMEYQKQMLALHLKANPREVLVGWYATSSELNTFSALIQNFYSGQGDGTWPHPAVHLTV 147
Query: 118 DTNLKGPNMGIKGYVHVPIGVPGGKSG--IMFTQIPAEVICYNSEVTGLRLLH--KSIKQ 173
T G ++ + Y+ P+GV ++ F +P E+ +E +GL + + ++
Sbjct: 148 STE-PGKDIETRAYISAPVGVTAERAADSAAFIPVPHEIRYGEAEKSGLEAIAAARDSEE 206
Query: 174 GAVQPLSELTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQ 233
+ +++ + A +++ +ID V RYV+ V+ ++G+ LL+ + P +
Sbjct: 207 RSTSLFTDIEALERAIEEVLGMIDRVSRYVESVIDEEAPASTALGQFLLNALALAPKVEP 266
Query: 234 EQFETMFNSNIKDLLMI 250
E FN++I+D+L++
Sbjct: 267 ADIERDFNNHIQDVLVV 283
>POMBASE|SPBC4C3.07 [details] [associations]
symbol:SPBC4C3.07 "translation initiation factor eIF3f"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0004843
"ubiquitin-specific protease activity" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:0006413
"translational initiation" evidence=IMP] [GO:0016282 "eukaryotic
43S preinitiation complex" evidence=IDA] [GO:0071540 "eukaryotic
translation initiation factor 3 complex, eIF3e" evidence=IDA]
[GO:0071541 "eukaryotic translation initiation factor 3 complex,
eIF3m" evidence=IDA] [GO:0003743 "translation initiation factor
activity" evidence=IC] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 PomBase:SPBC4C3.07 GO:GO:0005829 GO:GO:0005634
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003743
eggNOG:COG1310 GO:GO:0004843 GO:GO:0002183 InterPro:IPR024969
Pfam:PF13012 KO:K03249 OMA:HPVVLFQ HAMAP:MF_03005 GO:GO:0016282
GO:GO:0071540 GO:GO:0071541 HOGENOM:HOG000241154 OrthoDB:EOG4RZ28G
PIR:T40490 RefSeq:NP_596298.1 ProteinModelPortal:O43060
STRING:O43060 EnsemblFungi:SPBC4C3.07.1 GeneID:2540868
KEGG:spo:SPBC4C3.07 NextBio:20801984 Uniprot:O43060
Length = 302
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 77/263 (29%), Positives = 144/263 (54%)
Query: 5 VSIKVHPVVLFQIVDAFERRNLDSHRVIGTLLGT--VDKGVVEVTNCFCVPHKEYDEMVE 62
++I + P VLF I+D R++ ++ RVIGTLLGT D +E+ +CF VPH E E VE
Sbjct: 21 LNIVIEPAVLFSILDHSTRKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVE 80
Query: 63 AELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECK----------NP 112
E+ Y + M+ ++ K NP E++VGW+AT ++ + S++I + Y + +P
Sbjct: 81 VEMEYHRAMYHLHLKANPREVVVGWYATSPDLDAFSALIQNLYASPAEPGTAPLGTYPHP 140
Query: 113 -VHMTLDTNLKGPNMGIKGYVHVPIGVPGGKS-GIMFTQIPAEVICYNSEVTGLRLLH-- 168
VH+T++T++ P + IK YV P+G+ + F P + + +GL+ +
Sbjct: 141 CVHLTVNTDVSSP-LAIKTYVSSPVGITERLADSCAFVPTPFTIRDDEAVRSGLKAVAAP 199
Query: 169 KSIKQGAVQPLSELTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSV 228
K+ ++L + + +L +I+ V YV V+ + ++GR L+ + +
Sbjct: 200 KNDPSRLASLFTDLQQLRRSTLELLSMIERVSDYVQNVIDGSSPANVAVGRYLMKCFSLI 259
Query: 229 PSMTQEQFETMFNSNIKDLLMIM 251
P + + FE +F+S+++D+L+++
Sbjct: 260 PCVEGQDFEKIFSSHLQDVLVVV 282
>TAIR|locus:2074653 [details] [associations]
symbol:MEE34 "AT3G11270" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008541 "proteasome regulatory
particle, lid subcomplex" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0005634 "nucleus" evidence=TAS] [GO:0030163 "protein catabolic
process" evidence=TAS] [GO:0009793 "embryo development ending in
seed dormancy" evidence=IMP] [GO:0000502 "proteasome complex"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0009407 "toxin catabolic process" evidence=RCA] [GO:0010162
"seed dormancy process" evidence=RCA] [GO:0010564 "regulation of
cell cycle process" evidence=RCA] [GO:0042023 "DNA
endoreduplication" evidence=RCA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=RCA]
[GO:0043248 "proteasome assembly" evidence=RCA] [GO:0048366 "leaf
development" evidence=RCA] [GO:0048825 "cotyledon development"
evidence=RCA] [GO:0051510 "regulation of unidimensional cell
growth" evidence=RCA] [GO:0051788 "response to misfolded protein"
evidence=RCA] [GO:0080129 "proteasome core complex assembly"
evidence=RCA] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009793
GO:GO:0030163 GO:GO:0000502 EMBL:AC073395 InterPro:IPR024969
Pfam:PF13012 KO:K03038 HOGENOM:HOG000209236 ProtClustDB:PLN03246
MEROPS:M67.973 EMBL:AY258412 EMBL:AK228032 IPI:IPI00536063
RefSeq:NP_187736.1 UniGene:At.39785 ProteinModelPortal:Q9C774
SMR:Q9C774 IntAct:Q9C774 STRING:Q9C774 PRIDE:Q9C774 DNASU:820298
EnsemblPlants:AT3G11270.1 GeneID:820298 KEGG:ath:AT3G11270
TAIR:At3g11270 InParanoid:Q9C774 OMA:INAKEHI PhylomeDB:Q9C774
Genevestigator:Q9C774 Uniprot:Q9C774
Length = 310
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 72/250 (28%), Positives = 123/250 (49%)
Query: 9 VHPVVLFQIVDAFERRNLD-SHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEA---E 64
VHP+VL IVD + R D S RV+G LLG+ +G V+VTN + VP +E D+ +
Sbjct: 19 VHPLVLLSIVDHYNRVAKDTSKRVVGVLLGSSSRGTVDVTNSYAVPFEEDDKDTSIWFLD 78
Query: 65 LNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTNLKGP 124
NY + MF M +++N E IVGW++TG ++ +H + NPV + +D K
Sbjct: 79 HNYHESMFHMFKRINAKEHIVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKEL 138
Query: 125 NMGIKGYVHVPIGVPGG--KSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAVQPLS-E 181
+ K Y V KS +F +P E+ + E G+ L + +K + L+ E
Sbjct: 139 GIPTKAYYAVEEVKENATQKSQQVFVHVPTEIAAHEVEEIGVEHLLRDVKDTTISTLATE 198
Query: 182 LTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFETMFN 241
+T A L + + Y+D V+ ++ ++ I L D+ N +P++ + F
Sbjct: 199 VTAKLTALKGLDARLREIRTYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELVKAFA 258
Query: 242 SNIKDLLMIM 251
D+++++
Sbjct: 259 VKTNDMMLVI 268
>TAIR|locus:2166449 [details] [associations]
symbol:RPN8A "AT5G05780" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008541 "proteasome regulatory
particle, lid subcomplex" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0009965 "leaf morphogenesis" evidence=IMP] [GO:0000502
"proteasome complex" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0042023 "DNA endoreduplication" evidence=RCA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0051510 "regulation of unidimensional cell
growth" evidence=RCA] [GO:0051788 "response to misfolded protein"
evidence=RCA] [GO:0080129 "proteasome core complex assembly"
evidence=RCA] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000502
GO:GO:0009965 eggNOG:COG1310 EMBL:AB005237 InterPro:IPR024969
Pfam:PF13012 KO:K03038 EMBL:U54560 EMBL:AF378878 EMBL:BT002610
EMBL:AY087393 IPI:IPI00538047 RefSeq:NP_196197.1 UniGene:At.20537
UniGene:At.67787 ProteinModelPortal:O24412 SMR:O24412 IntAct:O24412
STRING:O24412 PaxDb:O24412 PRIDE:O24412 EnsemblPlants:AT5G05780.1
GeneID:830463 KEGG:ath:AT5G05780 TAIR:At5g05780
HOGENOM:HOG000209236 InParanoid:O24412 OMA:RSIIALH PhylomeDB:O24412
ProtClustDB:PLN03246 Genevestigator:O24412 GermOnline:AT5G05780
Uniprot:O24412
Length = 308
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 71/252 (28%), Positives = 125/252 (49%)
Query: 7 IKVHPVVLFQIVDAFERRNLDSH-RVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEA-- 63
+ VHP+VL IVD + R DS RV+G LLG+ +GVV+VTN + VP +E D+
Sbjct: 17 VVVHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSSSRGVVDVTNSYAVPFEEDDKDPSIWF 76
Query: 64 -ELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTNLK 122
+ NY + MF M +++N E +VGW++TG ++ +H + NPV + +D K
Sbjct: 77 LDHNYHESMFHMFKRINAKEHVVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPK 136
Query: 123 GPNMGIKGYVHVPIGVPGG--KSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAVQPLS 180
+ K Y V KS +F + E+ + E G+ L + +K + L+
Sbjct: 137 ELGIPTKAYYAVEEVKENATQKSQKVFVHVSTEIAAHEVEEIGVEHLLRDVKDTTISTLA 196
Query: 181 -ELTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFETM 239
E+T A L + + Y+D V+ ++ ++ I L D+ N +P++ +
Sbjct: 197 TEVTAKLTALKGLDARLREIRSYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELVKA 256
Query: 240 FNSNIKDLLMIM 251
F+ D+++++
Sbjct: 257 FSVKTNDMMLVI 268
>WB|WBGene00001229 [details] [associations]
symbol:eif-3.F species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
GO:GO:0008340 GO:GO:0009792 GO:GO:0006898 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0010171
GO:GO:0040035 GO:GO:0003743 eggNOG:COG1310 InterPro:IPR024969
Pfam:PF13012 GeneTree:ENSGT00530000063075 KO:K03249 OMA:HPVVLFQ
HAMAP:MF_03005 HOGENOM:HOG000241154 EMBL:Z47808 PIR:T20338
RefSeq:NP_495988.1 ProteinModelPortal:Q18967 SMR:Q18967
DIP:DIP-25689N IntAct:Q18967 MINT:MINT-1039602 STRING:Q18967
PaxDb:Q18967 EnsemblMetazoa:D2013.7.1 EnsemblMetazoa:D2013.7.2
GeneID:174478 KEGG:cel:CELE_D2013.7 UCSC:D2013.7 CTD:174478
WormBase:D2013.7 InParanoid:Q18967 NextBio:884206 Uniprot:Q18967
Length = 294
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 67/238 (28%), Positives = 122/238 (51%)
Query: 1 MSLNVSIKVHPVVLFQIVDAFERR------NLDSHRVIGTLLGTVDKGVVEVTNCFCVPH 54
M+ N+++ VHP V +VD RR N + +GTL+G +KG ++VTNCF +P
Sbjct: 1 MASNLTVNVHPGVYMNVVDTHMRRTKSSAKNTGQEKCMGTLMGYYEKGSIQVTNCFAIPF 60
Query: 55 KEYDEMVEAELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIR---EC-- 109
E ++ +E + + Q M +K +P+E VGW+ T ++TS + HDYY+R E
Sbjct: 61 NESNDDLEIDDQFNQQMISALKKTSPNEQPVGWFLTTSDITSSCLIYHDYYVRVITEASA 120
Query: 110 --KNP--VHMTLDTNLKGP---NMGIKGYVHVPIGVPG--GKSGIMFTQIPAEVICYNSE 160
++P V +T+DT G M ++ Y+ G+PG G +F + E+ + E
Sbjct: 121 RRESPPIVVLTIDTTFSGDMSKRMPVRAYLRSKAGIPGAAGPHCAIFNPLRVELAAFPGE 180
Query: 161 VTGLRLLHKSIKQGAVQPLSE--LTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNS 216
+ ++L+ K++ + E L + + ++ ++ +L YV++V N P ++
Sbjct: 181 LVAMQLIEKALDSRRREATLESGLEQLETSTAQMIEWLERMLHYVEDVNKNGEKPGDA 238
Score = 148 (57.2 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 40/153 (26%), Positives = 77/153 (50%)
Query: 107 RECKNPVHMTLDTNLKGP---NMGIKGYVHVPIGVPG--GKSGIMFTQIPAEVICYNSEV 161
RE V +T+DT G M ++ Y+ G+PG G +F + E+ + E+
Sbjct: 122 RESPPIVVLTIDTTFSGDMSKRMPVRAYLRSKAGIPGAAGPHCAIFNPLRVELAAFPGEL 181
Query: 162 TGLRLLHKSIKQGAVQPLSE--LTLVSEAADKLTVLIDHVLRYVDEVLANRITP-DNSIG 218
++L+ K++ + E L + + ++ ++ +L YV++V N P D IG
Sbjct: 182 VAMQLIEKALDSRRREATLESGLEQLETSTAQMIEWLERMLHYVEDVNKNGEKPGDAQIG 241
Query: 219 RQLLDMVN-SVPSMTQEQFETMFNSNIKDLLMI 250
RQL+D+V S +M E+ +T+ + ++D +M+
Sbjct: 242 RQLMDIVTASSNNMQPEKLDTLVKNTLRDYVMV 274
>FB|FBgn0002787 [details] [associations]
symbol:Rpn8 "Regulatory particle non-ATPase 8" species:7227
"Drosophila melanogaster" [GO:0004175 "endopeptidase activity"
evidence=NAS;IDA] [GO:0000502 "proteasome complex"
evidence=NAS;IDA] [GO:0008541 "proteasome regulatory particle, lid
subcomplex" evidence=ISS;NAS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=NAS] [GO:0005838 "proteasome
regulatory particle" evidence=ISS;IDA] [GO:0006508 "proteolysis"
evidence=ISS;IDA] [GO:0009987 "cellular process" evidence=IMP]
[GO:0030425 "dendrite" evidence=IMP] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0000022 "mitotic spindle
elongation" evidence=IMP] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
EMBL:AE013599 GO:GO:0022008 GO:GO:0008283 GO:GO:0030425
GO:GO:0006508 GO:GO:0004175 GO:GO:0008541 eggNOG:COG1310
GO:GO:0000022 InterPro:IPR024969 Pfam:PF13012
GeneTree:ENSGT00530000063075 KO:K03038 BRENDA:3.4.25.1 OMA:RSIIALH
MEROPS:M67.973 EMBL:M64643 EMBL:AY089283 RefSeq:NP_523845.2
UniGene:Dm.770 ProteinModelPortal:P26270 SMR:P26270 DIP:DIP-22847N
IntAct:P26270 MINT:MINT-819762 STRING:P26270 PaxDb:P26270
EnsemblMetazoa:FBtr0072290 EnsemblMetazoa:FBtr0332921 GeneID:37894
KEGG:dme:Dmel_CG3416 UCSC:CG3416-RA CTD:37894 FlyBase:FBgn0002787
InParanoid:P26270 OrthoDB:EOG4BG7BS PhylomeDB:P26270
GenomeRNAi:37894 NextBio:805917 Bgee:P26270 GermOnline:CG3416
Uniprot:P26270
Length = 338
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 77/259 (29%), Positives = 131/259 (50%)
Query: 1 MSLNVSIKVHPVVLFQIVDAFERRNL--DSHRVIGTLLGTV-DKGVVEVTNCFCVPHKEY 57
+S+N I VHP+VL +VD F R + RV+G LLG KGV++V+N F VP E
Sbjct: 6 VSVNKVI-VHPLVLLSVVDHFNRMGKIGNQKRVVGVLLGCWRSKGVLDVSNSFAVPFDED 64
Query: 58 DEMVEA---ELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVH 114
D+ + +Y ++M+ M +KVN E +VGW+ TG ++ I++ R C N V
Sbjct: 65 DKDKSVWFLDHDYLENMYGMFKKVNARERVVGWYHTGPKLHQNDIAINELVRRYCPNSVL 124
Query: 115 MTLDTNLKGPNMGIKGYVHVP-IGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQ 173
+ +D K + + Y+ V + G + F +P+E+ +E G+ L + IK
Sbjct: 125 VIIDAKPKDLGLPTEAYISVEEVHDDGSPTSKTFEHVPSEIGAEEAEEVGVEHLLRDIKD 184
Query: 174 GAVQPLSE-LTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMT 232
V LS+ +T L + + +Y+ V +++ ++ I QL D+ N +P +T
Sbjct: 185 TTVGSLSQKITNQLMGLKGLNAQLRDIKQYLQRVGDSKMPINHQIVYQLQDIFNLLPDIT 244
Query: 233 QEQFE-TMFNSNIKDLLMI 250
+QF TM+ +L++
Sbjct: 245 NDQFTGTMYVKTNDQMLVV 263
>DICTYBASE|DDB_G0279633 [details] [associations]
symbol:psmD7 "26S proteasome non-ATPase regulatory
subunit 7" species:44689 "Dictyostelium discoideum" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0005838 "proteasome regulatory particle" evidence=ISS]
[GO:0000502 "proteasome complex" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 dictyBase:DDB_G0279633 GenomeReviews:CM000152_GR
GO:GO:0006511 EMBL:AAFI02000032 eggNOG:COG1310 InterPro:IPR024969
Pfam:PF13012 KO:K03038 GO:GO:0005838 OMA:RSIIALH MEROPS:M67.973
RefSeq:XP_641565.1 ProteinModelPortal:Q54WI8 SMR:Q54WI8
STRING:Q54WI8 EnsemblProtists:DDB0232987 GeneID:8622140
KEGG:ddi:DDB_G0279633 ProtClustDB:CLSZ2434496 Uniprot:Q54WI8
Length = 325
Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 69/250 (27%), Positives = 127/250 (50%)
Query: 9 VHPVVLFQIVDAFERRNLDSH-RVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVE----A 63
VHP VL +VD + R D++ RV+G LLG+ +KGVV+V+NC+ +P +E DE
Sbjct: 10 VHPTVLLSVVDHYNRVAKDTNKRVVGALLGSNNKGVVDVSNCYGLPFEE-DEANPNIWFL 68
Query: 64 ELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTNLKG 123
+ N+ ++MF M +K+N E +VGW++TG ++ I++ + R NPV + +D K
Sbjct: 69 DHNFHENMFAMFKKINARENVVGWYSTGPKIRPADQDINELFRRYTPNPVMVIIDVAPKE 128
Query: 124 PNMGIKGYVHVP-IGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAVQPLS-E 181
+ K YV V I +S + F IP+ + +E + L + +K ++ L+ +
Sbjct: 129 LGIPTKSYVTVEEINKDTSESTMRFQHIPSSIDAVEAEEICIEHLLRDVKDSSISSLTTQ 188
Query: 182 LTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFETMFN 241
+T + L + + Y+ V + P++ I + D++N P++ + F
Sbjct: 189 ITDKKISLKHLLTNLQEMQHYLKLVCDGTLPPNHQIIGYIQDIINLSPNLNANEISKSFA 248
Query: 242 SNIKDLLMIM 251
D + ++
Sbjct: 249 VQNNDTMSVI 258
>UNIPROTKB|P51665 [details] [associations]
symbol:PSMD7 "26S proteasome non-ATPase regulatory subunit
7" species:9606 "Homo sapiens" [GO:0005515 "protein binding"
evidence=IPI] [GO:0000502 "proteasome complex" evidence=TAS]
[GO:0005838 "proteasome regulatory particle" evidence=TAS]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000082 "G1/S
transition of mitotic cell cycle" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000209 "protein
polyubiquitination" evidence=TAS] [GO:0000216 "M/G1 transition of
mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
evidence=TAS] [GO:0002474 "antigen processing and presentation of
peptide antigen via MHC class I" evidence=TAS] [GO:0002479 "antigen
processing and presentation of exogenous peptide antigen via MHC
class I, TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
"regulation of cellular amino acid metabolic process" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] Reactome:REACT_13505 Reactome:REACT_578
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_6850
Reactome:REACT_111217 InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
GO:GO:0005829 Reactome:REACT_111102 Reactome:REACT_116125
Reactome:REACT_6900 GO:GO:0006915 GO:GO:0010467 GO:GO:0016071
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0002479 GO:GO:0016032
Reactome:REACT_21300 GO:GO:0006977 GO:GO:0042981 GO:GO:0044281
GO:GO:0000082 GO:GO:0051436 GO:GO:0000216 GO:GO:0000209
eggNOG:COG1310 GO:GO:0000084 GO:GO:0031145 GO:GO:0051437
EMBL:CH471166 GO:GO:0006521 Reactome:REACT_383 InterPro:IPR024969
Pfam:PF13012 KO:K03038 GO:GO:0005838 HOGENOM:HOG000209236
OMA:RSIIALH MEROPS:M67.973 CTD:5713 HOVERGEN:HBG035951
OrthoDB:EOG441QC3 EMBL:D50063 EMBL:BC000338 EMBL:BC012606
IPI:IPI00019927 PIR:JC4154 PIR:S65491 RefSeq:NP_002802.2
UniGene:Hs.440604 PDB:2O95 PDB:2O96 PDBsum:2O95 PDBsum:2O96
ProteinModelPortal:P51665 SMR:P51665 DIP:DIP-27572N IntAct:P51665
MINT:MINT-5002613 STRING:P51665 PhosphoSite:P51665 DMDM:20532412
PaxDb:P51665 PeptideAtlas:P51665 PRIDE:P51665 DNASU:5713
Ensembl:ENST00000219313 GeneID:5713 KEGG:hsa:5713 UCSC:uc002fcq.3
GeneCards:GC16P074330 HGNC:HGNC:9565 HPA:CAB019379 MIM:157970
neXtProt:NX_P51665 PharmGKB:PA33911 InParanoid:P51665
PhylomeDB:P51665 ChiTaRS:PSMD7 EvolutionaryTrace:P51665
GenomeRNAi:5713 NextBio:22194 ArrayExpress:P51665 Bgee:P51665
CleanEx:HS_PSMD7 Genevestigator:P51665 GermOnline:ENSG00000103035
Uniprot:P51665
Length = 324
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 70/252 (27%), Positives = 125/252 (49%)
Query: 7 IKVHPVVLFQIVDAFERRNL--DSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEA- 63
+ VHP+VL +VD F R + RV+G LLG+ K V++V+N F VP E D+
Sbjct: 9 VVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVW 68
Query: 64 --ELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTNL 121
+ +Y ++M+ M +KVN E IVGW+ TG ++ I++ R C N V + +D
Sbjct: 69 FLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKP 128
Query: 122 KGPNMGIKGYVHVP-IGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAVQPLS 180
K + + Y+ V + G + F + +E+ +E G+ L + IK V LS
Sbjct: 129 KDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLS 188
Query: 181 E-LTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFETM 239
+ +T L + + Y+++V ++ ++ I QL D+ N +P ++ ++F
Sbjct: 189 QRITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKA 248
Query: 240 FNSNIKDLLMIM 251
F D ++++
Sbjct: 249 FYLKTNDQMVVV 260
>UNIPROTKB|Q3ZBD0 [details] [associations]
symbol:PSMD7 "26S proteasome non-ATPase regulatory subunit
7" species:9913 "Bos taurus" [GO:0000502 "proteasome complex"
evidence=IEA] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
GO:GO:0000502 eggNOG:COG1310 InterPro:IPR024969 Pfam:PF13012
GeneTree:ENSGT00530000063075 KO:K03038 HOGENOM:HOG000209236
OMA:RSIIALH EMBL:BC103437 IPI:IPI00685826 RefSeq:NP_001029595.1
UniGene:Bt.49378 ProteinModelPortal:Q3ZBD0 SMR:Q3ZBD0 STRING:Q3ZBD0
MEROPS:M67.973 PRIDE:Q3ZBD0 Ensembl:ENSBTAT00000024515
GeneID:512456 KEGG:bta:512456 CTD:5713 HOVERGEN:HBG035951
InParanoid:Q3ZBD0 OrthoDB:EOG441QC3 NextBio:20870397 Uniprot:Q3ZBD0
Length = 322
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 70/252 (27%), Positives = 125/252 (49%)
Query: 7 IKVHPVVLFQIVDAFERRNL--DSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEA- 63
+ VHP+VL +VD F R + RV+G LLG+ K V++V+N F VP E D+
Sbjct: 9 VVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVW 68
Query: 64 --ELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTNL 121
+ +Y ++M+ M +KVN E IVGW+ TG ++ I++ R C N V + +D
Sbjct: 69 FLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKP 128
Query: 122 KGPNMGIKGYVHVP-IGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAVQPLS 180
K + + Y+ V + G + F + +E+ +E G+ L + IK V LS
Sbjct: 129 KDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLS 188
Query: 181 E-LTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFETM 239
+ +T L + + Y+++V ++ ++ I QL D+ N +P ++ ++F
Sbjct: 189 QRITNQVHGLKGLNSKLLDIRGYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKA 248
Query: 240 FNSNIKDLLMIM 251
F D ++++
Sbjct: 249 FYLKTNDQMVVV 260
>UNIPROTKB|A4R0E5 [details] [associations]
symbol:MGG_10653 "Eukaryotic translation initiation factor
3 subunit F" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
GO:GO:0005737 GO:GO:0003743 EMBL:CM001231 eggNOG:COG1310
InterPro:IPR024969 Pfam:PF13012 KO:K03249 HAMAP:MF_03005
RefSeq:XP_003710082.1 ProteinModelPortal:A4R0E5 STRING:A4R0E5
EnsemblFungi:MGG_10653T0 GeneID:2682266 KEGG:mgr:MGG_10653
OrthoDB:EOG4RZ28G Uniprot:A4R0E5
Length = 370
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 68/261 (26%), Positives = 135/261 (51%)
Query: 5 VSIKVHPVVLFQIVDAFERRNL-DSH--RVIGTLLGT-VDKGV-VEVTNCFCVPHKEYDE 59
+++ + P + I+D RR++ D+ RVIG L+G + G VEV + F +PH E ++
Sbjct: 29 LTVTIQPQAILSILDHAVRRDIRDTQATRVIGALVGVRSEDGTDVEVRSTFAIPHTENED 88
Query: 60 MVEAELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRE----CKNP-VH 114
VE ++ Y ++M + K +P E ++GW+ T E+ S S++I +++ +P VH
Sbjct: 89 QVEVDVEYQKNMLALTLKASPRESLLGWYTTSHELNSFSALIQNFFASPETGTFPHPAVH 148
Query: 115 MTLDTNLKGPNMGIKGYVHVPIGVPGGKSG--IMFTQIPAEVICYN-SEVTGLRLLH--K 169
+T+ T+ G ++ + Y+ P V ++ F Q+P N S+ L + K
Sbjct: 149 LTMSTD-PGADIEPRCYISAPAAVSPDRAAESCFFIQVPHRTPPTNESDRAALEAIAAGK 207
Query: 170 SIKQGAVQPLSELTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVP 229
+ LS++ ++ + ++ ++D YV VL P +++G+ L++ ++ P
Sbjct: 208 DDEARTAPVLSDVEALARSLEQTIDMLDRTSEYVGAVLDEEREPSHALGQYLMNNLSLAP 267
Query: 230 SMTQEQFETMFNSNIKDLLMI 250
+ E FN++I+D+LM+
Sbjct: 268 KVDSVSIEHDFNNHIQDVLMV 288
>MGI|MGI:1351511 [details] [associations]
symbol:Psmd7 "proteasome (prosome, macropain) 26S subunit,
non-ATPase, 7" species:10090 "Mus musculus" [GO:0000502 "proteasome
complex" evidence=IEA] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 MGI:MGI:1351511 GO:GO:0000502 eggNOG:COG1310
InterPro:IPR024969 Pfam:PF13012 GeneTree:ENSGT00530000063075
KO:K03038 HOGENOM:HOG000209236 OMA:RSIIALH MEROPS:M67.973 CTD:5713
HOVERGEN:HBG035951 OrthoDB:EOG441QC3 EMBL:M64641 EMBL:M64640
EMBL:M64634 EMBL:M64635 EMBL:M64636 EMBL:M64637 EMBL:M64639
EMBL:AK031013 EMBL:AK159825 IPI:IPI00114667 PIR:A40556
RefSeq:NP_034947.1 UniGene:Mm.18347 ProteinModelPortal:P26516
SMR:P26516 IntAct:P26516 STRING:P26516 PhosphoSite:P26516
PaxDb:P26516 PRIDE:P26516 Ensembl:ENSMUST00000044106 GeneID:17463
KEGG:mmu:17463 InParanoid:P26516 NextBio:292104 Bgee:P26516
Genevestigator:P26516 GermOnline:ENSMUSG00000039067 Uniprot:P26516
Length = 321
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 70/252 (27%), Positives = 125/252 (49%)
Query: 7 IKVHPVVLFQIVDAFERRNL--DSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEA- 63
+ VHP+VL +VD F R + RV+G LLG+ K V++V+N F VP E D+
Sbjct: 9 VVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVW 68
Query: 64 --ELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTNL 121
+ +Y ++M+ M +KVN E IVGW+ TG ++ I++ R C N V + +D
Sbjct: 69 FLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKP 128
Query: 122 KGPNMGIKGYVHVP-IGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAVQPLS 180
K + + Y+ V + G + F + +E+ +E G+ L + IK V LS
Sbjct: 129 KDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLS 188
Query: 181 E-LTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFETM 239
+ +T L + + Y+++V + ++ ++ I QL D+ N +P + ++F
Sbjct: 189 QRITNQVHGLKGLNSKLLDIRSYLEKVASGKLPINHQIIYQLQDVFNLLPDASLQEFVKA 248
Query: 240 FNSNIKDLLMIM 251
F D ++++
Sbjct: 249 FYLKTNDQMVVV 260
>RGD|1306902 [details] [associations]
symbol:Psmd7 "proteasome (prosome, macropain) 26S subunit,
non-ATPase, 7" species:10116 "Rattus norvegicus" [GO:0000502
"proteasome complex" evidence=IEA] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 RGD:1306902 GO:GO:0000502 EMBL:CH473972
InterPro:IPR024969 Pfam:PF13012 GeneTree:ENSGT00530000063075
KO:K03038 OMA:RSIIALH CTD:5713 OrthoDB:EOG441QC3 IPI:IPI00359611
RefSeq:NP_001100896.1 UniGene:Rn.20659 IntAct:D4AEH3
Ensembl:ENSRNOT00000019104 GeneID:307821 KEGG:rno:307821
UCSC:RGD:1306902 NextBio:657930 Uniprot:D4AEH3
Length = 320
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 70/252 (27%), Positives = 125/252 (49%)
Query: 7 IKVHPVVLFQIVDAFERRNL--DSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEA- 63
+ VHP+VL +VD F R + RV+G LLG+ K V++V+N F VP E D+
Sbjct: 9 VVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVW 68
Query: 64 --ELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTNL 121
+ +Y ++M+ M +KVN E IVGW+ TG ++ I++ R C N V + +D
Sbjct: 69 FLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKP 128
Query: 122 KGPNMGIKGYVHVP-IGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAVQPLS 180
K + + Y+ V + G + F + +E+ +E G+ L + IK V LS
Sbjct: 129 KDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLS 188
Query: 181 E-LTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFETM 239
+ +T L + + Y+++V + ++ ++ I QL D+ N +P + ++F
Sbjct: 189 QRITNQVHGLKGLNSKLLDIRTYLEKVASGKLPINHHIIYQLQDVFNLLPDASLQEFVKA 248
Query: 240 FNSNIKDLLMIM 251
F D ++++
Sbjct: 249 FYLKTNDQMVVV 260
>ZFIN|ZDB-GENE-030131-5541 [details] [associations]
symbol:psmd7 "proteasome (prosome, macropain) 26S
subunit, non-ATPase, 7 (Mov34 homolog)" species:7955 "Danio rerio"
[GO:0021551 "central nervous system morphogenesis" evidence=IMP]
[GO:0000502 "proteasome complex" evidence=IEA] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 ZFIN:ZDB-GENE-030131-5541 GO:GO:0000502
eggNOG:COG1310 GO:GO:0021551 InterPro:IPR024969 Pfam:PF13012
GeneTree:ENSGT00530000063075 KO:K03038 HOGENOM:HOG000209236
OMA:RSIIALH MEROPS:M67.973 CTD:5713 HOVERGEN:HBG035951
OrthoDB:EOG441QC3 EMBL:BC044358 EMBL:BC066605 IPI:IPI00481317
RefSeq:NP_956083.1 UniGene:Dr.80368 SMR:Q7ZYX7 STRING:Q7ZYX7
Ensembl:ENSDART00000098229 GeneID:327330 KEGG:dre:327330
InParanoid:Q7ZYX7 NextBio:20809984 Uniprot:Q7ZYX7
Length = 327
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 70/252 (27%), Positives = 125/252 (49%)
Query: 7 IKVHPVVLFQIVDAFER-RNLDSH-RVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEA- 63
+ VHP+VL +VD F R + S RV+G LLG+ K V++V+N F VP E D+
Sbjct: 9 VVVHPLVLLSVVDHFNRIGKVGSQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVW 68
Query: 64 --ELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTNL 121
+ +Y ++M+ M +KVN E IVGW+ TG ++ I++ + C N V + +D
Sbjct: 69 FLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKQYCSNSVLVIIDVKP 128
Query: 122 KGPNMGIKGYVHVP-IGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAVQPLS 180
K + + Y+ V + G + F + +E+ +E G+ L + IK V LS
Sbjct: 129 KDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLS 188
Query: 181 E-LTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFETM 239
+ +T L + + Y+++V ++ ++ I QL D+ N +P + ++F
Sbjct: 189 QRITNQVHGLKGLNSKLLDIKSYLEKVATGKLPINHQIIYQLQDVFNLLPDVNLQEFVKA 248
Query: 240 FNSNIKDLLMIM 251
F D ++++
Sbjct: 249 FYLKTNDQMLVV 260
>WB|WBGene00004464 [details] [associations]
symbol:rpn-8 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0000003 eggNOG:COG1310 InterPro:IPR024969
Pfam:PF13012 GeneTree:ENSGT00530000063075 EMBL:FO080613 KO:K03038
HOGENOM:HOG000209236 OMA:RSIIALH MEROPS:M67.973 PIR:T33096
RefSeq:NP_491319.1 ProteinModelPortal:O61792 SMR:O61792
IntAct:O61792 MINT:MINT-210994 STRING:O61792 PaxDb:O61792
EnsemblMetazoa:R12E2.3.1 EnsemblMetazoa:R12E2.3.2 GeneID:172009
KEGG:cel:CELE_R12E2.3 UCSC:R12E2.3.1 CTD:172009 WormBase:R12E2.3
InParanoid:O61792 NextBio:873645 Uniprot:O61792
Length = 362
Score = 240 (89.5 bits), Expect = 2.9e-20, P = 2.9e-20
Identities = 65/251 (25%), Positives = 119/251 (47%)
Query: 7 IKVHPVVLFQIVDAFER--RNLDSHRVIGTLLGTVDKG-VVEVTNCFCVPHKEYDEMVEA 63
+ VHP+VL +VD F R + RV+G LLG++ K +++ N F VP E D+
Sbjct: 41 VTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKST 100
Query: 64 ---ELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTN 120
+++Y + M+ M KV E IVGW+ TG ++ I++ R C NPV + +D
Sbjct: 101 WFLDMDYLESMYGMFYKVAAKEKIVGWYHTGPKLHKNDIAINEQLKRFCPNPVLVIIDAE 160
Query: 121 LKGPNMGIKGYVHVPIGVPGGKSGIM-FTQIPAEVICYNSEVTGLRLLHKSIKQGAVQPL 179
K + + Y+ V G I F +P+++ +E G+ L + IK L
Sbjct: 161 PKNIGLPTEAYIEVQEVHDDGTPPIKTFEHVPSDIGAEEAEEVGVEHLLRDIKDQTAGTL 220
Query: 180 SE-LTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFET 238
S+ +T L ++ + +Y+ +++ + ++ + + +++N +P +T +
Sbjct: 221 SQRITDQLMGLRGLQSQLESIEKYLHDIVRGTLPVNHHVIYYVQEVLNLLPDVTHPDYIV 280
Query: 239 MFNSNIKDLLM 249
N D LM
Sbjct: 281 SQNVQTNDQLM 291
>UNIPROTKB|O61792 [details] [associations]
symbol:rpn-8 "Protein RPN-8" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0008340
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0000003
eggNOG:COG1310 InterPro:IPR024969 Pfam:PF13012
GeneTree:ENSGT00530000063075 EMBL:FO080613 KO:K03038
HOGENOM:HOG000209236 OMA:RSIIALH MEROPS:M67.973 PIR:T33096
RefSeq:NP_491319.1 ProteinModelPortal:O61792 SMR:O61792
IntAct:O61792 MINT:MINT-210994 STRING:O61792 PaxDb:O61792
EnsemblMetazoa:R12E2.3.1 EnsemblMetazoa:R12E2.3.2 GeneID:172009
KEGG:cel:CELE_R12E2.3 UCSC:R12E2.3.1 CTD:172009 WormBase:R12E2.3
InParanoid:O61792 NextBio:873645 Uniprot:O61792
Length = 362
Score = 240 (89.5 bits), Expect = 2.9e-20, P = 2.9e-20
Identities = 65/251 (25%), Positives = 119/251 (47%)
Query: 7 IKVHPVVLFQIVDAFER--RNLDSHRVIGTLLGTVDKG-VVEVTNCFCVPHKEYDEMVEA 63
+ VHP+VL +VD F R + RV+G LLG++ K +++ N F VP E D+
Sbjct: 41 VTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKST 100
Query: 64 ---ELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTN 120
+++Y + M+ M KV E IVGW+ TG ++ I++ R C NPV + +D
Sbjct: 101 WFLDMDYLESMYGMFYKVAAKEKIVGWYHTGPKLHKNDIAINEQLKRFCPNPVLVIIDAE 160
Query: 121 LKGPNMGIKGYVHVPIGVPGGKSGIM-FTQIPAEVICYNSEVTGLRLLHKSIKQGAVQPL 179
K + + Y+ V G I F +P+++ +E G+ L + IK L
Sbjct: 161 PKNIGLPTEAYIEVQEVHDDGTPPIKTFEHVPSDIGAEEAEEVGVEHLLRDIKDQTAGTL 220
Query: 180 SE-LTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFET 238
S+ +T L ++ + +Y+ +++ + ++ + + +++N +P +T +
Sbjct: 221 SQRITDQLMGLRGLQSQLESIEKYLHDIVRGTLPVNHHVIYYVQEVLNLLPDVTHPDYIV 280
Query: 239 MFNSNIKDLLM 249
N D LM
Sbjct: 281 SQNVQTNDQLM 291
>SGD|S000005787 [details] [associations]
symbol:RPN8 "non-ATPase regulatory subunit of the 26S
proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0008541
"proteasome regulatory particle, lid subcomplex" evidence=IDA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034515 "proteasome storage granule" evidence=IDA] [GO:0000502
"proteasome complex" evidence=IEA] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 SGD:S000005787 EMBL:BK006948 GO:GO:0008541
GO:GO:0006511 eggNOG:COG1310 InterPro:IPR024969 Pfam:PF13012
GeneTree:ENSGT00530000063075 RefSeq:NP_014907.3 GeneID:854437
KEGG:sce:YOR264W GO:GO:0034515 RefSeq:NP_014904.3 PDB:4B4T
PDBsum:4B4T GeneID:854435 KEGG:sce:YOR261C KO:K03038
HOGENOM:HOG000209236 OMA:RSIIALH MEROPS:M67.973 OrthoDB:EOG4QC4FM
EMBL:Z75169 EMBL:AY558039 PIR:S67158 ProteinModelPortal:Q08723
SMR:Q08723 DIP:DIP-1574N IntAct:Q08723 MINT:MINT-405204
STRING:Q08723 PaxDb:Q08723 PeptideAtlas:Q08723 EnsemblFungi:YOR261C
NextBio:976670 Genevestigator:Q08723 GermOnline:YOR261C
Uniprot:Q08723
Length = 338
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 58/239 (24%), Positives = 124/239 (51%)
Query: 1 MSL-NVSIKVHPVVLFQIVDAFER-RNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYD 58
MSL + + + P+VL +D +ER + ++ R +G +LG + + VTN F +P +E +
Sbjct: 1 MSLQHEKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEEDE 60
Query: 59 EMVEA---ELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKN-PVH 114
+ + + NY ++M EM +K+N E ++GW+ +G ++ + I++ + + +N P+
Sbjct: 61 KNSDVWFLDHNYIENMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQNNPLL 120
Query: 115 MTLDTNLKGPNMGIKGYVHVP-IGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQ 173
+ +D +G + YV + + G + F +P + +E G+ L + ++
Sbjct: 121 LIVDVKQQGVGLPTDAYVAIEQVKDDGTSTEKTFLHLPCTIEAEEAEEIGVEHLLRDVRD 180
Query: 174 GAVQPLS-ELTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSM 231
A LS LT ++ L + V+ Y+D+V+ + +++I +L D+ N +P++
Sbjct: 181 QAAGGLSIRLTNQLKSLKGLQSKLKDVVEYLDKVINKELPINHTILGKLQDVFNLLPNL 239
>POMBASE|SPCC1682.10 [details] [associations]
symbol:rpn8 "19S proteasome regulatory subunit Rpn8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004843
"ubiquitin-specific protease activity" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0005635 "nuclear envelope"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IC]
[GO:0008541 "proteasome regulatory particle, lid subcomplex"
evidence=ISO] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=NAS] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 PomBase:SPCC1682.10 GO:GO:0005829 GO:GO:0007346
GO:GO:0005635 GO:GO:0043161 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0008541 eggNOG:COG1310 GO:GO:0004843 InterPro:IPR024969
Pfam:PF13012 KO:K03038 HOGENOM:HOG000209236 MEROPS:M67.973
PIR:T41067 RefSeq:NP_587803.1 ProteinModelPortal:O74440 SMR:O74440
IntAct:O74440 STRING:O74440 PRIDE:O74440 EnsemblFungi:SPCC1682.10.1
GeneID:2538912 KEGG:spo:SPCC1682.10 OMA:KKINANE OrthoDB:EOG4QC4FM
NextBio:20800090 Uniprot:O74440
Length = 324
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 68/259 (26%), Positives = 126/259 (48%)
Query: 9 VHPVVLFQIVDAFERRNLDS-HRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEA---E 64
VHP+VL VD++ R + RV+G LLG + VV V N + +P +E ++ +
Sbjct: 19 VHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWFLD 78
Query: 65 LNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTNLKGP 124
N+ + M EM +K+N +E +VGW+ TG ++ I++ + NPV + +D K
Sbjct: 79 HNFMESMNEMFKKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVKPKSV 138
Query: 125 NMGIKGYVHVP-IGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAVQPLSELT 183
+ Y + I G KS F +P+ + +E G+ L + + +V L+ T
Sbjct: 139 GLPTNAYFAIDEIEDDGSKSSRTFVHLPSSIEAEEAEEIGVEHLLRDTRDASVGTLA--T 196
Query: 184 LVSEAADKLTVL---IDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSM------TQE 234
V++ A L L + + Y+ +V+ ++ +++I +L + N +P++ +++
Sbjct: 197 RVTQQAQSLQGLGQRLTEIADYLRKVVDGQLPINHAILAELQSVFNLLPNIFSGPVVSEQ 256
Query: 235 QFET----MFNSNIKDLLM 249
E+ FN N D LM
Sbjct: 257 ALESEAQRAFNVNSNDQLM 275
>CGD|CAL0002371 [details] [associations]
symbol:RPN8 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0035690 "cellular response to
drug" evidence=IMP] [GO:0008541 "proteasome regulatory particle,
lid subcomplex" evidence=IEA] [GO:0005635 "nuclear envelope"
evidence=IEA] [GO:0034515 "proteasome storage granule"
evidence=IEA] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
CGD:CAL0002371 GO:GO:0035690 EMBL:AACQ01000100 eggNOG:COG1310
InterPro:IPR024969 Pfam:PF13012 KO:K03038 HOGENOM:HOG000209236
MEROPS:M67.973 RefSeq:XP_714586.1 ProteinModelPortal:Q59YL2
SMR:Q59YL2 STRING:Q59YL2 GeneID:3643770 KEGG:cal:CaO19.3168
Uniprot:Q59YL2
Length = 330
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 64/241 (26%), Positives = 118/241 (48%)
Query: 3 LNVSIKVHPVVLFQIVDAFERRNLDSH-RVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMV 61
L+ S+ V P+VL +VD + R DS RV+G +LG ++VTN + +P +E DE
Sbjct: 14 LDKSVVVSPLVLLSVVDHYNRVAKDSKKRVVGVILGDNSTDTIKVTNSYAIPFEE-DEKN 72
Query: 62 EA----ELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTL 117
+ N+ M EM +K+N E ++GW+ +G ++ I++ + R NP+ + +
Sbjct: 73 PGVWFLDHNFIDSMGEMFKKINAKEKLIGWYHSGPKLKPSDLKINEVFRRYTDNPLLLIV 132
Query: 118 DTNLKGPNMGIKGYVHVP-IGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAV 176
D + + Y V I G + F +P+ + +E G+ L + I+ A
Sbjct: 133 DVQPREVGIPTDAYFAVDDIKNDGSAAEKTFIHVPSLIEAEEAEEIGVEHLLRDIRDQAA 192
Query: 177 QPLSELTLVSEAADKLTVL---IDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQ 233
LS VSE L L + + Y+D+V ++ +++I +L ++ N +P++ Q
Sbjct: 193 GNLS--LRVSETHQSLLGLHQKLGEIANYLDKVYQKKLPMNHTILGKLQNVFNLLPNLMQ 250
Query: 234 E 234
+
Sbjct: 251 Q 251
>UNIPROTKB|Q59YL2 [details] [associations]
symbol:RPN8 "Likely 26S proteasome regulatory particle
subunit Rpn8p" species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] [GO:0035690 "cellular response to
drug" evidence=IMP] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
CGD:CAL0002371 GO:GO:0035690 EMBL:AACQ01000100 eggNOG:COG1310
InterPro:IPR024969 Pfam:PF13012 KO:K03038 HOGENOM:HOG000209236
MEROPS:M67.973 RefSeq:XP_714586.1 ProteinModelPortal:Q59YL2
SMR:Q59YL2 STRING:Q59YL2 GeneID:3643770 KEGG:cal:CaO19.3168
Uniprot:Q59YL2
Length = 330
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 64/241 (26%), Positives = 118/241 (48%)
Query: 3 LNVSIKVHPVVLFQIVDAFERRNLDSH-RVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMV 61
L+ S+ V P+VL +VD + R DS RV+G +LG ++VTN + +P +E DE
Sbjct: 14 LDKSVVVSPLVLLSVVDHYNRVAKDSKKRVVGVILGDNSTDTIKVTNSYAIPFEE-DEKN 72
Query: 62 EA----ELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTL 117
+ N+ M EM +K+N E ++GW+ +G ++ I++ + R NP+ + +
Sbjct: 73 PGVWFLDHNFIDSMGEMFKKINAKEKLIGWYHSGPKLKPSDLKINEVFRRYTDNPLLLIV 132
Query: 118 DTNLKGPNMGIKGYVHVP-IGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAV 176
D + + Y V I G + F +P+ + +E G+ L + I+ A
Sbjct: 133 DVQPREVGIPTDAYFAVDDIKNDGSAAEKTFIHVPSLIEAEEAEEIGVEHLLRDIRDQAA 192
Query: 177 QPLSELTLVSEAADKLTVL---IDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQ 233
LS VSE L L + + Y+D+V ++ +++I +L ++ N +P++ Q
Sbjct: 193 GNLS--LRVSETHQSLLGLHQKLGEIANYLDKVYQKKLPMNHTILGKLQNVFNLLPNLMQ 250
Query: 234 E 234
+
Sbjct: 251 Q 251
>UNIPROTKB|G4NCJ9 [details] [associations]
symbol:MGG_01059 "26S proteasome regulatory subunit rpn-8"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
EMBL:CM001235 GO:GO:0000502 InterPro:IPR024969 Pfam:PF13012
KO:K03038 RefSeq:XP_003717880.1 ProteinModelPortal:G4NCJ9
SMR:G4NCJ9 EnsemblFungi:MGG_01059T0 GeneID:2674847
KEGG:mgr:MGG_01059 Uniprot:G4NCJ9
Length = 357
Score = 220 (82.5 bits), Expect = 6.2e-18, P = 6.2e-18
Identities = 63/235 (26%), Positives = 117/235 (49%)
Query: 6 SIKVHPVVLFQIVDAFERRNLD---SHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVE 62
++ V P+VL +VD + R + + + RV+G LLG D V V+N F VP +E ++
Sbjct: 15 NVSVAPLVLLSVVDHYNRESANQTKNKRVVGVLLGQNDGKNVRVSNSFAVPFEEDEKNPS 74
Query: 63 A---ELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDT 119
+ NY + M +M +KVN E ++GW+ +G ++ + I++ + R NP+ + +D
Sbjct: 75 VWFLDHNYVESMNDMFKKVNAREKLIGWYHSGPKLRASDLEINELFKRYTPNPLLVIIDV 134
Query: 120 NLKGPNMGIKGYVHVP-IGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAVQP 178
K + Y V I G + F P+ + +E G+ L + I+ AV
Sbjct: 135 QPKEAGVPTDAYFAVDEIKDDGTATSRTFVHTPSIIEAEEAEEIGVEHLLRDIRDVAVGT 194
Query: 179 LS-ELTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMT 232
LS LT ++ L + + + Y+ +VL + +++I L D+ N +P+++
Sbjct: 195 LSTRLTNQLQSLQGLHLRLRDIQAYLQKVLDGDLPVNHAILGNLQDVFNLLPNLS 249
>ASPGD|ASPL0000029143 [details] [associations]
symbol:AN5121 species:162425 "Emericella nidulans"
[GO:0005622 "intracellular" evidence=IDA] [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0008541 "proteasome regulatory particle, lid
subcomplex" evidence=IEA] [GO:0005635 "nuclear envelope"
evidence=IEA] [GO:0034515 "proteasome storage granule"
evidence=IEA] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
EMBL:BN001305 InterPro:IPR024969 Pfam:PF13012 HOGENOM:HOG000209236
OMA:RSIIALH EnsemblFungi:CADANIAT00003105 Uniprot:C8VEY3
Length = 349
Score = 207 (77.9 bits), Expect = 1.7e-16, P = 1.7e-16
Identities = 61/234 (26%), Positives = 117/234 (50%)
Query: 6 SIKVHPVVLFQIVDAFERRNLDSH-RVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEA- 63
++ V P+VL + D + R + RV+G LLG G V V+N F VP +E DE +
Sbjct: 15 TVTVAPLVLLSVADHYGRSAKGTRKRVVGVLLGEHIGGNVRVSNSFAVPFEE-DEKDPSV 73
Query: 64 ---ELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTN 120
+ N+ + M +M +K+N E ++GW+ +G ++ + I++ + R NP+ + +D
Sbjct: 74 WFLDHNFVESMRDMFKKINAREKLIGWYHSGPKLRASDLEINELFKRYTPNPLLVIVDVQ 133
Query: 121 LKGPNMGIKGYVHVP-IGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAVQPL 179
K + Y V I G + F P+ + +E G+ L + I+ AV L
Sbjct: 134 PKEVGVPTDAYFAVDEIKDDGTTTSRTFVHTPSTIEAEEAEEIGVEHLLRDIRDVAVGTL 193
Query: 180 S-ELTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMT 232
S +T ++ L + + + +Y+ +VL + + +++I L D+ N +P+++
Sbjct: 194 STRITSQLQSLQGLHLRLRDIGQYLQKVLDHELPVNHAILGNLQDVFNLLPNLS 247
>DICTYBASE|DDB_G0293180 [details] [associations]
symbol:csn6 "Mov34/MPN/PAD-1 family protein"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IEA;IDA] [GO:0008180 "signalosome"
evidence=IEA;ISS;IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 dictyBase:DDB_G0293180 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0008180 eggNOG:COG1310
EMBL:AAFI02000199 KO:K12179 OMA:IGKQKGR InterPro:IPR024969
Pfam:PF13012 EMBL:DQ309434 RefSeq:XP_629327.1
ProteinModelPortal:Q54C92 STRING:Q54C92 PRIDE:Q54C92
EnsemblProtists:DDB0233105 GeneID:8629051 KEGG:ddi:DDB_G0293180
ProtClustDB:CLSZ2429325 Uniprot:Q54C92
Length = 309
Score = 200 (75.5 bits), Expect = 5.2e-16, P = 5.2e-16
Identities = 56/257 (21%), Positives = 121/257 (47%)
Query: 2 SLNVSIKVHPVVLFQIVDAFERRNLDSH-----RVIGTLLGTVDKGVVEVTNCFCVPHKE 56
S + + +HP+VL I D F R + S+ RVIG +LG + VE+ N F + +
Sbjct: 23 SSGLEVDLHPLVLINISDHFTRTKVQSNYQDNCRVIGVILGVQNGRNVEICNSFEMVYAT 82
Query: 57 YDEMVEAELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMT 116
D+ + ++ Y + +E ++ P ++GW++TG +V+ ++H ++P+++
Sbjct: 83 VDKQLVLDIEYLRKKYE---QLFPLYDLLGWYSTGSQVSKDDILLHKQISEHNESPLYLM 139
Query: 117 LDTNL-KGPNMGIKGYVHVPIGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGA 175
LDT+ K ++ + Y + + + +F + P ++ +E G+ + K G+
Sbjct: 140 LDTDSPKSKDLPVIIY-ESELHIVNDEPTTIFVKTPYKIQTGEAERIGVNHIAKVTPSGS 198
Query: 176 VQP--LSELTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQ 233
S L + A L + + + Y+ V R+ + +I R+ + N +P++
Sbjct: 199 EGSGLTSHLFTMHNAISMLNIRVKALSDYLQAVKEKRLPYEQNILRKASSLCNQLPTIDT 258
Query: 234 EQFETMFNSNIKDLLMI 250
F+ + D+L++
Sbjct: 259 HDFKKSYLQEYNDVLLV 275
>CGD|CAL0000353 [details] [associations]
symbol:orf19.4283 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0016282 "eukaryotic 43S
preinitiation complex" evidence=IEA] [GO:0071541 "eukaryotic
translation initiation factor 3 complex, eIF3m" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0071540 "eukaryotic
translation initiation factor 3 complex, eIF3e" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 CGD:CAL0000353 eggNOG:COG1310 EMBL:AACQ01000021
EMBL:AACQ01000022 KO:K03249 RefSeq:XP_720591.1 RefSeq:XP_720719.1
ProteinModelPortal:Q5AG96 STRING:Q5AG96 GeneID:3637587
GeneID:3637771 KEGG:cal:CaO19.11759 KEGG:cal:CaO19.4283
Uniprot:Q5AG96
Length = 335
Score = 159 (61.0 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 31/102 (30%), Positives = 63/102 (61%)
Query: 6 SIKVHPVVLFQIVDAFERRNLDSHRVIGTLLGT-VDKGV-VEVTNCFCVPHKEYDEMVEA 63
SIK+H + I++ ++ L+ R+IGTLLG+ D G+ +E+ + F VP E + +
Sbjct: 28 SIKIHAPAMLTILEIISQQVLNK-RIIGTLLGSRSDDGLEMEIKDGFMVPINETGDSIAI 86
Query: 64 ELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYY 105
E + ++++ +K +P E ++GW+ + +++ +S+IHD+Y
Sbjct: 87 EDQVHKSLYQLYKKAHPKETVLGWFGSSNQIDDITSLIHDFY 128
Score = 49 (22.3 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 16/72 (22%), Positives = 38/72 (52%)
Query: 181 ELTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQE--QFET 238
+L+ +S+ +K T + +L Y++ N+ D + R L + + + P++ + E
Sbjct: 239 DLSYLSQQLNKATDNVGQLLSYIENN-GNK-DQDIDLLRLLSNQLLNKPAILTNLPELEK 296
Query: 239 MFNSNIKDLLMI 250
+F + +D++MI
Sbjct: 297 LFKDHNQDVIMI 308
>UNIPROTKB|Q5AG96 [details] [associations]
symbol:CaO19.11759 "Potential translation initiation factor
eIF3-epsilon-p47 subunit" species:237561 "Candida albicans SC5314"
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 CGD:CAL0000353 eggNOG:COG1310
EMBL:AACQ01000021 EMBL:AACQ01000022 KO:K03249 RefSeq:XP_720591.1
RefSeq:XP_720719.1 ProteinModelPortal:Q5AG96 STRING:Q5AG96
GeneID:3637587 GeneID:3637771 KEGG:cal:CaO19.11759
KEGG:cal:CaO19.4283 Uniprot:Q5AG96
Length = 335
Score = 159 (61.0 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 31/102 (30%), Positives = 63/102 (61%)
Query: 6 SIKVHPVVLFQIVDAFERRNLDSHRVIGTLLGT-VDKGV-VEVTNCFCVPHKEYDEMVEA 63
SIK+H + I++ ++ L+ R+IGTLLG+ D G+ +E+ + F VP E + +
Sbjct: 28 SIKIHAPAMLTILEIISQQVLNK-RIIGTLLGSRSDDGLEMEIKDGFMVPINETGDSIAI 86
Query: 64 ELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYY 105
E + ++++ +K +P E ++GW+ + +++ +S+IHD+Y
Sbjct: 87 EDQVHKSLYQLYKKAHPKETVLGWFGSSNQIDDITSLIHDFY 128
Score = 49 (22.3 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 16/72 (22%), Positives = 38/72 (52%)
Query: 181 ELTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQE--QFET 238
+L+ +S+ +K T + +L Y++ N+ D + R L + + + P++ + E
Sbjct: 239 DLSYLSQQLNKATDNVGQLLSYIENN-GNK-DQDIDLLRLLSNQLLNKPAILTNLPELEK 296
Query: 239 MFNSNIKDLLMI 250
+F + +D++MI
Sbjct: 297 LFKDHNQDVIMI 308
>UNIPROTKB|B4DXI8 [details] [associations]
symbol:PSMD7 "26S proteasome non-ATPase regulatory subunit
7" species:9606 "Homo sapiens" [GO:0000502 "proteasome complex"
evidence=IEA] InterPro:IPR000555 Pfam:PF01398 GO:GO:0000502
InterPro:IPR024969 Pfam:PF13012 HOVERGEN:HBG035951
UniGene:Hs.440604 HGNC:HGNC:9565 ChiTaRS:PSMD7 EMBL:AC009120
EMBL:AK301996 IPI:IPI01009629 SMR:B4DXI8 STRING:B4DXI8
Ensembl:ENST00000540379 Uniprot:B4DXI8
Length = 247
Score = 163 (62.4 bits), Expect = 9.2e-11, P = 9.2e-11
Identities = 45/183 (24%), Positives = 86/183 (46%)
Query: 71 MFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTNLKGPNMGIKG 130
M+ M +KVN E IVGW+ TG ++ I++ R C N V + +D K + +
Sbjct: 1 MYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEA 60
Query: 131 YVHVP-IGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAVQPLSE-LTLVSEA 188
Y+ V + G + F + +E+ +E G+ L + IK V LS+ +T
Sbjct: 61 YISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHG 120
Query: 189 ADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFETMFNSNIKDLL 248
L + + Y+++V ++ ++ I QL D+ N +P ++ ++F F D +
Sbjct: 121 LKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQM 180
Query: 249 MIM 251
+++
Sbjct: 181 VVV 183
>ZFIN|ZDB-GENE-050417-289 [details] [associations]
symbol:cops6 "COP9 constitutive photomorphogenic
homolog subunit 6 (Arabidopsis)" species:7955 "Danio rerio"
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0060026 "convergent
extension" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0009953 "dorsal/ventral pattern formation"
evidence=IMP] [GO:0021551 "central nervous system morphogenesis"
evidence=IMP] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
ZFIN:ZDB-GENE-050417-289 GO:GO:0007420 GO:GO:0009953 GO:GO:0060026
GO:GO:0021551 KO:K12179 InterPro:IPR024969 Pfam:PF13012 CTD:10980
HOVERGEN:HBG107770 EMBL:BC093188 IPI:IPI00570094
RefSeq:NP_001017768.1 UniGene:Dr.42675 ProteinModelPortal:Q567F8
PRIDE:Q567F8 GeneID:550465 KEGG:dre:550465 NextBio:20879709
Uniprot:Q567F8
Length = 297
Score = 164 (62.8 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 55/251 (21%), Positives = 117/251 (46%)
Query: 4 NVSIKVHPVVLFQIVDAFER-RNLDSH--RVIGTLLGTVDKGVVEVTNCFCVPHKEYDEM 60
+VS+ +HP+V+ I D + R R+ + +V+G L+G + +EV N F + ++
Sbjct: 8 SVSVALHPLVILNISDHWIRIRSQEGRAVQVVGALIGKQEGRNIEVMNSFELLFHTVEDQ 67
Query: 61 VEAELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSV-IHDYYIRECKNPVHMTLDT 119
+ + Y E ++V +GW+ TG QS + IH ++P+ + L+
Sbjct: 68 IHIDKEYYYTKEEQFKQVFKEMEFLGWYTTGGS-PDQSDIHIHKQVCEIIESPLFLKLNP 126
Query: 120 NLKGPNMGIKGYVHVPIGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAVQ-- 177
K ++ + + V I + G++ ++F ++P + +E G+ + + G +
Sbjct: 127 MTKHTDLPVSVFESV-IDIISGEATMLFAELPYTLATEEAERIGVDHVARMTATGTGENS 185
Query: 178 PLSELTLVSEAADK-LTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQF 236
++E + +A K L + +L YV V A + ++ I R+ + + +P + +F
Sbjct: 186 TVAEHLIAQHSAIKMLHSRVKVILEYVKAVQAGEVPFNHEILREANALCHRLPVLNTLKF 245
Query: 237 ETMFNSNIKDL 247
+T F D+
Sbjct: 246 KTDFYDQCNDV 256
>UNIPROTKB|A7TX81 [details] [associations]
symbol:COPS6 "COP9 signalosome complex subunit 6"
species:9823 "Sus scrofa" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008180 "signalosome" evidence=IEA] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 GO:GO:0005737 GO:GO:0008180 KO:K12179
InterPro:IPR024969 Pfam:PF13012 CTD:10980 HOVERGEN:HBG107770
EMBL:EF468513 RefSeq:NP_001098769.1 UniGene:Ssc.8359
ProteinModelPortal:A7TX81 GeneID:100125954 KEGG:ssc:100125954
Uniprot:A7TX81
Length = 323
Score = 153 (58.9 bits), Expect = 6.7e-09, P = 6.7e-09
Identities = 52/250 (20%), Positives = 112/250 (44%)
Query: 4 NVSIKVHPVVLFQIVDAFERRNLDSHR---VIGTLLGTVDKGVVEVTNCFCVPHKEYDEM 60
+VS+ +HP+V+ I D + R R VIG L+G + +EV N F + +E
Sbjct: 34 SVSVALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEK 93
Query: 61 VEAELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTN 120
+ + Y E ++V +GW+ TG +H ++P+ + L+
Sbjct: 94 IIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPM 153
Query: 121 LKGPNMGIKGYVHVPIGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAVQ--P 178
K ++ + + V I + G++ ++F ++ + +E G+ + + G+ +
Sbjct: 154 TKHTDLPVSVFESV-IDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENST 212
Query: 179 LSELTLVSEAADK-LTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFE 237
++E + +A K L + +L YV A + ++ I R+ + + +P ++ ++F+
Sbjct: 213 VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFK 272
Query: 238 TMFNSNIKDL 247
T F D+
Sbjct: 273 TDFYDQCNDV 282
>UNIPROTKB|F1MG10 [details] [associations]
symbol:COPS6 "COP9 signalosome complex subunit 6"
species:9913 "Bos taurus" [GO:0010388 "cullin deneddylation"
evidence=IEA] [GO:0008180 "signalosome" evidence=IEA]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0008180
GO:GO:0010388 OMA:IGKQKGR InterPro:IPR024969 Pfam:PF13012
IPI:IPI00867272 UniGene:Bt.52796 GeneTree:ENSGT00530000063075
EMBL:DAAA02058286 PRIDE:F1MG10 Ensembl:ENSBTAT00000003725
Uniprot:F1MG10
Length = 324
Score = 153 (58.9 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 52/250 (20%), Positives = 112/250 (44%)
Query: 4 NVSIKVHPVVLFQIVDAFERRNLDSHR---VIGTLLGTVDKGVVEVTNCFCVPHKEYDEM 60
+VS+ +HP+V+ I D + R R VIG L+G + +EV N F + +E
Sbjct: 35 SVSVALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEK 94
Query: 61 VEAELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTN 120
+ + Y E ++V +GW+ TG +H ++P+ + L+
Sbjct: 95 IIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPM 154
Query: 121 LKGPNMGIKGYVHVPIGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAVQ--P 178
K ++ + + V I + G++ ++F ++ + +E G+ + + G+ +
Sbjct: 155 TKHTDLPVSVFESV-IDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENST 213
Query: 179 LSELTLVSEAADK-LTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFE 237
++E + +A K L + +L YV A + ++ I R+ + + +P ++ ++F+
Sbjct: 214 VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFK 273
Query: 238 TMFNSNIKDL 247
T F D+
Sbjct: 274 TDFYDQCNDV 283
>MGI|MGI:1349439 [details] [associations]
symbol:Cops6 "COP9 (constitutive photomorphogenic) homolog,
subunit 6 (Arabidopsis thaliana)" species:10090 "Mus musculus"
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008180
"signalosome" evidence=ISO;IDA] [GO:0010388 "cullin deneddylation"
evidence=ISO] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
MGI:MGI:1349439 GO:GO:0005737 GO:GO:0008180 eggNOG:COG1310
GO:GO:0010388 HOGENOM:HOG000253002 KO:K12179 OMA:IGKQKGR
InterPro:IPR024969 Pfam:PF13012 CTD:10980 HOVERGEN:HBG107770
OrthoDB:EOG4JDH76 MEROPS:M67.972 EMBL:AF071315 EMBL:BC004664
EMBL:BC014286 IPI:IPI00131873 RefSeq:NP_036132.1 UniGene:Mm.3981
ProteinModelPortal:O88545 SMR:O88545 STRING:O88545
PhosphoSite:O88545 PaxDb:O88545 PRIDE:O88545
Ensembl:ENSMUST00000019638 GeneID:26893 KEGG:mmu:26893
InParanoid:O88545 NextBio:304723 Bgee:O88545 Genevestigator:O88545
GermOnline:ENSMUSG00000019494 Uniprot:O88545
Length = 324
Score = 153 (58.9 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 52/250 (20%), Positives = 112/250 (44%)
Query: 4 NVSIKVHPVVLFQIVDAFERRNLDSHR---VIGTLLGTVDKGVVEVTNCFCVPHKEYDEM 60
+VS+ +HP+V+ I D + R R VIG L+G + +EV N F + +E
Sbjct: 35 SVSVALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEK 94
Query: 61 VEAELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTN 120
+ + Y E ++V +GW+ TG +H ++P+ + L+
Sbjct: 95 IIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPM 154
Query: 121 LKGPNMGIKGYVHVPIGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAVQ--P 178
K ++ + + V I + G++ ++F ++ + +E G+ + + G+ +
Sbjct: 155 TKHTDLPVSVFESV-IDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENST 213
Query: 179 LSELTLVSEAADK-LTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFE 237
++E + +A K L + +L YV A + ++ I R+ + + +P ++ ++F+
Sbjct: 214 VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFK 273
Query: 238 TMFNSNIKDL 247
T F D+
Sbjct: 274 TDFYDQCNDV 283
>UNIPROTKB|E7EM64 [details] [associations]
symbol:COPS6 "COP9 signalosome complex subunit 6"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 GO:GO:0005634 InterPro:IPR024969
Pfam:PF13012 HGNC:HGNC:21749 ChiTaRS:COPS6 EMBL:AC073842
IPI:IPI00924791 ProteinModelPortal:E7EM64 SMR:E7EM64
Ensembl:ENST00000418625 ArrayExpress:E7EM64 Bgee:E7EM64
Uniprot:E7EM64
Length = 326
Score = 153 (58.9 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 52/250 (20%), Positives = 112/250 (44%)
Query: 4 NVSIKVHPVVLFQIVDAFERRNLDSHR---VIGTLLGTVDKGVVEVTNCFCVPHKEYDEM 60
+VS+ +HP+V+ I D + R R VIG L+G + +EV N F + +E
Sbjct: 37 SVSVALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEK 96
Query: 61 VEAELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTN 120
+ + Y E ++V +GW+ TG +H ++P+ + L+
Sbjct: 97 IIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPM 156
Query: 121 LKGPNMGIKGYVHVPIGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAVQ--P 178
K ++ + + V I + G++ ++F ++ + +E G+ + + G+ +
Sbjct: 157 TKHTDLPVSVFESV-IDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENST 215
Query: 179 LSELTLVSEAADK-LTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFE 237
++E + +A K L + +L YV A + ++ I R+ + + +P ++ ++F+
Sbjct: 216 VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFK 275
Query: 238 TMFNSNIKDL 247
T F D+
Sbjct: 276 TDFYDQCNDV 285
>UNIPROTKB|Q7L5N1 [details] [associations]
symbol:COPS6 "COP9 signalosome complex subunit 6"
species:9606 "Homo sapiens" [GO:0019048 "virus-host interaction"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0008180 "signalosome"
evidence=IDA] [GO:0010388 "cullin deneddylation" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
GO:GO:0005737 GO:GO:0019048 EMBL:CH236956 EMBL:CH471091
GO:GO:0008180 eggNOG:COG1310 GO:GO:0010388 HOGENOM:HOG000253002
KO:K12179 OMA:IGKQKGR InterPro:IPR024969 Pfam:PF13012 CTD:10980
HOVERGEN:HBG107770 OrthoDB:EOG4JDH76 MEROPS:M67.972 EMBL:BC002520
EMBL:U70735 IPI:IPI00163230 RefSeq:NP_006824.2 UniGene:Hs.15591
ProteinModelPortal:Q7L5N1 SMR:Q7L5N1 DIP:DIP-32655N IntAct:Q7L5N1
MINT:MINT-5005311 STRING:Q7L5N1 PhosphoSite:Q7L5N1 DMDM:55976470
PaxDb:Q7L5N1 PeptideAtlas:Q7L5N1 PRIDE:Q7L5N1 DNASU:10980
Ensembl:ENST00000303904 GeneID:10980 KEGG:hsa:10980 UCSC:uc003usu.3
GeneCards:GC07P099686 HGNC:HGNC:21749 HPA:HPA044315 MIM:614729
neXtProt:NX_Q7L5N1 PharmGKB:PA134919933 InParanoid:Q7L5N1
PhylomeDB:Q7L5N1 ChiTaRS:COPS6 GenomeRNAi:10980 NextBio:41718
ArrayExpress:Q7L5N1 Bgee:Q7L5N1 CleanEx:HS_COPS6
Genevestigator:Q7L5N1 GermOnline:ENSG00000168090 Uniprot:Q7L5N1
Length = 327
Score = 153 (58.9 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 52/250 (20%), Positives = 112/250 (44%)
Query: 4 NVSIKVHPVVLFQIVDAFERRNLDSHR---VIGTLLGTVDKGVVEVTNCFCVPHKEYDEM 60
+VS+ +HP+V+ I D + R R VIG L+G + +EV N F + +E
Sbjct: 38 SVSVALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEK 97
Query: 61 VEAELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTN 120
+ + Y E ++V +GW+ TG +H ++P+ + L+
Sbjct: 98 IIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPM 157
Query: 121 LKGPNMGIKGYVHVPIGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAVQ--P 178
K ++ + + V I + G++ ++F ++ + +E G+ + + G+ +
Sbjct: 158 TKHTDLPVSVFESV-IDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENST 216
Query: 179 LSELTLVSEAADK-LTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFE 237
++E + +A K L + +L YV A + ++ I R+ + + +P ++ ++F+
Sbjct: 217 VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFK 276
Query: 238 TMFNSNIKDL 247
T F D+
Sbjct: 277 TDFYDQCNDV 286
>UNIPROTKB|A6QQ21 [details] [associations]
symbol:COPS6 "COP9 signalosome complex subunit 6"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008180 "signalosome" evidence=IEA] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 GO:GO:0005737 GO:GO:0008180
eggNOG:COG1310 HOGENOM:HOG000253002 KO:K12179 InterPro:IPR024969
Pfam:PF13012 EMBL:BC149601 IPI:IPI00867272 RefSeq:NP_001095433.1
UniGene:Bt.52796 ProteinModelPortal:A6QQ21 STRING:A6QQ21
PRIDE:A6QQ21 GeneID:512756 KEGG:bta:512756 CTD:10980
HOVERGEN:HBG107770 InParanoid:A6QQ21 OrthoDB:EOG4JDH76
NextBio:20870547 Uniprot:A6QQ21
Length = 324
Score = 152 (58.6 bits), Expect = 8.9e-09, P = 8.9e-09
Identities = 52/250 (20%), Positives = 112/250 (44%)
Query: 4 NVSIKVHPVVLFQIVDAFERRNLDSHR---VIGTLLGTVDKGVVEVTNCFCVPHKEYDEM 60
+VS+ +HP+V+ I D + R R VIG L+G + +EV N F + +E
Sbjct: 35 SVSVALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEK 94
Query: 61 VEAELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTN 120
+ + Y E ++V +GW+ TG +H ++P+ + L+
Sbjct: 95 IIIDKEYYYTKEEQFKQVFKELDFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPM 154
Query: 121 LKGPNMGIKGYVHVPIGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAVQ--P 178
K ++ + + V I + G++ ++F ++ + +E G+ + + G+ +
Sbjct: 155 TKHTDLPVSVFESV-IDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENST 213
Query: 179 LSELTLVSEAADK-LTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFE 237
++E + +A K L + +L YV A + ++ I R+ + + +P ++ ++F+
Sbjct: 214 VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFK 273
Query: 238 TMFNSNIKDL 247
T F D+
Sbjct: 274 TDFYDQCNDV 283
>RGD|1309919 [details] [associations]
symbol:Cops6 "COP9 signalosome subunit 6" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0008180
"signalosome" evidence=IEA;ISO] [GO:0010388 "cullin deneddylation"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 RGD:1309919
GO:GO:0008180 GO:GO:0010388 KO:K12179 InterPro:IPR024969
Pfam:PF13012 CTD:10980 OrthoDB:EOG4JDH76
GeneTree:ENSGT00530000063075 EMBL:CH474107 IPI:IPI00870712
RefSeq:NP_001100599.1 UniGene:Rn.35643 Ensembl:ENSRNOT00000001820
GeneID:304343 KEGG:rno:304343 UCSC:RGD:1309919 NextBio:652918
Uniprot:D3ZI16
Length = 344
Score = 152 (58.6 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 54/252 (21%), Positives = 115/252 (45%)
Query: 4 NVSIKVHPVVLFQIVDAFERRNLDSHR---VIGTLLGTVDKGVVEVTNCF-CVPHK-EYD 58
+VS+ +HP+V+ I D + R R VIG L+G + +EV N F + H E
Sbjct: 55 SVSVALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEKK 114
Query: 59 EMVEAELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLD 118
+++ E Y ++ + Q E + GW+ TG +H ++P+ + L+
Sbjct: 115 IIIDKEYYYTKEE-QFKQVFKELEFL-GWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLN 172
Query: 119 TNLKGPNMGIKGYVHVPIGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAVQ- 177
K ++ + + V I + G++ ++F ++ + +E G+ + + G+ +
Sbjct: 173 PMTKHTDLPVSVFESV-IDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGEN 231
Query: 178 -PLSELTLVSEAADK-LTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQ 235
++E + +A K L + +L YV A + ++ I R+ + + +P ++ ++
Sbjct: 232 STVAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDK 291
Query: 236 FETMFNSNIKDL 247
F+T F D+
Sbjct: 292 FKTDFYDQCNDV 303
>TAIR|locus:2131493 [details] [associations]
symbol:CSN6B "AT4G26430" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
"extracellular region" evidence=ISM] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010387 "signalosome assembly" evidence=IMP] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0000338 "protein deneddylation"
evidence=TAS] [GO:0008180 "signalosome" evidence=IPI]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0007275
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009585
EMBL:AL161565 EMBL:AL022223 GO:GO:0008180 eggNOG:COG1310
GO:GO:0000338 GO:GO:0010387 HOGENOM:HOG000253002 KO:K12179
ProtClustDB:CLSN2689622 InterPro:IPR024969 Pfam:PF13012
EMBL:AF434762 EMBL:AF395064 EMBL:AY080638 EMBL:BT002345
EMBL:AY087556 IPI:IPI00531332 PIR:T05061 RefSeq:NP_567746.1
UniGene:At.26288 UniGene:At.28451 UniGene:At.75239
ProteinModelPortal:Q8W1P0 SMR:Q8W1P0 IntAct:Q8W1P0 STRING:Q8W1P0
PaxDb:Q8W1P0 PRIDE:Q8W1P0 EnsemblPlants:AT4G26430.1 GeneID:828749
KEGG:ath:AT4G26430 TAIR:At4g26430 InParanoid:Q8W1P0 OMA:AMITNCT
PhylomeDB:Q8W1P0 Genevestigator:Q8W1P0 GermOnline:AT4G26430
Uniprot:Q8W1P0
Length = 317
Score = 134 (52.2 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 53/234 (22%), Positives = 104/234 (44%)
Query: 26 LDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEA-ELNYAQDMFEMNQKVNPSELI 84
L + RV G ++G VE+ N F +D ++ + ++ + E+ +KV P +
Sbjct: 53 LQNPRVYGCVIGLQRGRTVEIFNSF---ELIFDPALDTLDRSFLEKKQELYKKVFPDFYV 109
Query: 85 VGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDT--NLKGPNMGIKGY---VHVPIGVP 139
+GW++TG + T IH + ++PV++ L+ N ++ + Y HV G+P
Sbjct: 110 LGWYSTGSDATESDMHIHKALMDINESPVYVLLNPAINHAQKDLPVTIYESEFHVIDGIP 169
Query: 140 GGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQG---AVQPLSELTLVSEAADKLTVLI 196
+S + T E + ++ + H G A Q + LT + A L I
Sbjct: 170 --QSIFVHTSYTIETV-EAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRI 226
Query: 197 DHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFETMFNSNIKDLLMI 250
+ +++ + +NS+ RQ+ ++ S+P+ E+F F D L++
Sbjct: 227 RVLYQHIVAMQKGDKPCENSVLRQVSSLLRSLPAAESEKFNENFLMEYNDKLLM 280
Score = 48 (22.0 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 2 SLNVSIKVHPVVLFQIVDAFER 23
S ++ K+HP+V+ I D F R
Sbjct: 6 SSGLTFKLHPLVMLNISDHFTR 27
>TAIR|locus:2177601 [details] [associations]
symbol:CSN6A "AT5G56280" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=TAS] [GO:0030163 "protein
catabolic process" evidence=TAS] [GO:0008180 "signalosome"
evidence=TAS;IPI] [GO:0009640 "photomorphogenesis"
evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IMP] [GO:0007275 "multicellular organismal development"
evidence=IMP] [GO:0010387 "signalosome assembly" evidence=IMP]
[GO:0009165 "nucleotide biosynthetic process" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=RCA] [GO:0043248 "proteasome assembly" evidence=RCA]
[GO:0051788 "response to misfolded protein" evidence=RCA]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0007275
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006511
GO:GO:0009585 GO:GO:0008180 eggNOG:COG1310 GO:GO:0010387
EMBL:AY048692 EMBL:AF395063 EMBL:AB026656 EMBL:BT004034
IPI:IPI00519357 RefSeq:NP_568839.1 UniGene:At.20191
ProteinModelPortal:Q8W206 SMR:Q8W206 IntAct:Q8W206 STRING:Q8W206
PaxDb:Q8W206 PRIDE:Q8W206 EnsemblPlants:AT5G56280.1 GeneID:835727
KEGG:ath:AT5G56280 TAIR:At5g56280 HOGENOM:HOG000253002
InParanoid:Q8W206 KO:K12179 OMA:IGKQKGR PhylomeDB:Q8W206
ProtClustDB:CLSN2689622 Genevestigator:Q8W206 GermOnline:AT5G56280
InterPro:IPR024969 Pfam:PF13012 Uniprot:Q8W206
Length = 317
Score = 136 (52.9 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 56/232 (24%), Positives = 104/232 (44%)
Query: 30 RVIGTLLGTVDKG-VVEVTNCFCVPHKEYDEMVEA-ELNYAQDMFEMNQKVNPSELIVGW 87
RV G ++G V +G VE+ N F YD + + ++ + E+ +KV P I+GW
Sbjct: 57 RVYGCVIG-VQRGRTVEIFNSF---ELLYDPSTQTLDRSFLEKKQELYKKVFPDFYILGW 112
Query: 88 WATGDEVTSQSSVIHDYYIRECKNPVHMTLDT--NLKGPNMGIKGY---VHVPIGVPGGK 142
++TG + IH + ++PV++ L+ N ++ + Y +HV G+P
Sbjct: 113 YSTGSDAEESDMHIHKALMDINESPVYVLLNPAINHTQKDLPVTIYESELHVIDGIPQ-- 170
Query: 143 SGIMFTQIPAEVICYNSEVTGL-RLLHKSIKQG---AVQPLSELTLVSEAADKLTVLIDH 198
++F + +E + + H G A Q + LT + A L I
Sbjct: 171 --LIFAHTSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRV 228
Query: 199 VLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQEQFETMFNSNIKDLLMI 250
+ + + + + DNS+ RQ+ ++ +P+M E+F+ F D L+I
Sbjct: 229 LYQNLAAMQKGDKSCDNSVLRQVSSLLRRLPAMESERFQDNFLMEYNDKLLI 280
Score = 44 (20.5 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 2 SLNVSIKVHPVVLFQIVDAFER 23
S ++ K+HP+V+ I D + R
Sbjct: 6 SSGLTFKLHPLVIVNISDHYTR 27
>FB|FBgn0028837 [details] [associations]
symbol:CSN6 "COP9 complex homolog subunit 6" species:7227
"Drosophila melanogaster" [GO:0008180 "signalosome" evidence=ISS]
[GO:0050821 "protein stabilization" evidence=IMP] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IGI] [GO:0046331
"lateral inhibition" evidence=IMP] InterPro:IPR000555 Pfam:PF01398
SMART:SM00232 EMBL:AE014297 GO:GO:0007275 GO:GO:0005737
GO:GO:0007095 GO:GO:0050821 GO:GO:0048477 GO:GO:0046331
GO:GO:0008180 eggNOG:COG1310 GO:GO:0000338 GO:GO:0019781 KO:K12179
OMA:IGKQKGR InterPro:IPR024969 Pfam:PF13012
GeneTree:ENSGT00530000063075 EMBL:AY070607 RefSeq:NP_524451.1
UniGene:Dm.2377 PDB:4E0Q PDBsum:4E0Q ProteinModelPortal:Q9VCY3
SMR:Q9VCY3 IntAct:Q9VCY3 MINT:MINT-991251 STRING:Q9VCY3
MEROPS:M67.972 PaxDb:Q9VCY3 PRIDE:Q9VCY3 EnsemblMetazoa:FBtr0084265
GeneID:42661 KEGG:dme:Dmel_CG6932 CTD:42661 FlyBase:FBgn0028837
InParanoid:Q9VCY3 OrthoDB:EOG4KSN1G PhylomeDB:Q9VCY3
GenomeRNAi:42661 NextBio:829940 Bgee:Q9VCY3 GermOnline:CG6932
Uniprot:Q9VCY3
Length = 341
Score = 138 (53.6 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 54/256 (21%), Positives = 116/256 (45%)
Query: 4 NVSIKVHPVVLFQIVD---AFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEM 60
+V+I +HP+V+ I + F ++ + +V G L+G +E+ N F + +
Sbjct: 51 SVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSFELKTDVIGDE 110
Query: 61 VEAELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYY--IRECKNPVHMTLD 118
+Y + ++V +GW+ TGD T+ I I EC P+ + L+
Sbjct: 111 TVINKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINEC--PIMLQLN 168
Query: 119 TNLKG-PNMGIKGYVHVPIGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHK--SIKQGA 175
+ ++ +K + + I + G++ ++F + + +E G+ + + S + G
Sbjct: 169 PLSRSVDHLPLKLFESL-IDLVDGEATMLFVPLTYTLATEEAERIGVDHVARMTSNESGE 227
Query: 176 VQPLSELTLVSEAADK-LTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQE 234
++E + ++A K L I VL+Y+ +V A ++ + I R+ + + +P M
Sbjct: 228 KSVVAEHLVAQDSAIKMLNTRIKIVLQYIRDVEAGKLRANQEILREAYALCHRLPVMQVP 287
Query: 235 QFETMFNSNIKDLLMI 250
F+ F + D+ +I
Sbjct: 288 AFQEEFYTQCNDVGLI 303
>ZFIN|ZDB-GENE-040808-19 [details] [associations]
symbol:eif3ha "eukaryotic translation initiation
factor 3, subunit H, a" species:7955 "Danio rerio" [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=ISS]
[GO:0006413 "translational initiation" evidence=IEA;ISS]
[GO:0003743 "translation initiation factor activity"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0007420 "brain
development" evidence=IMP] [GO:0048882 "lateral line development"
evidence=IMP] [GO:0001944 "vasculature development" evidence=IMP]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
ZFIN:ZDB-GENE-040808-19 GO:GO:0007420 GO:GO:0006413 GO:GO:0003743
GO:GO:0001944 GO:GO:0005852 EMBL:BC079514 IPI:IPI00496845
RefSeq:NP_001003763.1 UniGene:Dr.150579 STRING:Q6AXJ2
MEROPS:M67.971 PRIDE:Q6AXJ2 Ensembl:ENSDART00000044634
Ensembl:ENSDART00000110583 GeneID:445306 KEGG:dre:445306 CTD:445306
eggNOG:NOG314046 GeneTree:ENSGT00550000074674 HOGENOM:HOG000248787
HOVERGEN:HBG000883 KO:K03247 OMA:NCFPFPK OrthoDB:EOG4SJ5FF
NextBio:20832051 ArrayExpress:Q6AXJ2 Bgee:Q6AXJ2 GO:GO:0048882
HAMAP:MF_03007 Uniprot:Q6AXJ2
Length = 335
Score = 120 (47.3 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 7 IKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEAELN 66
I+V +V+ +I+ ++ S V G LLG V + +E+TNCF P D++ E+
Sbjct: 22 IQVDGLVVLKIIKHYQEEGQGSEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDVEFDEVQ 81
Query: 67 YAQDMFEMNQKVNPSELIVGWW 88
Y +M + VN L VGW+
Sbjct: 82 YQMEMMRSLRHVNIDHLHVGWY 103
>ZFIN|ZDB-GENE-051030-42 [details] [associations]
symbol:eif3hb "eukaryotic translation initiation
factor 3, subunit H, b" species:7955 "Danio rerio" [GO:0006413
"translational initiation" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=IEA;ISS]
[GO:0005852 "eukaryotic translation initiation factor 3 complex"
evidence=ISS] [GO:0006412 "translation" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0007420 "brain development"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
ZFIN:ZDB-GENE-051030-42 GO:GO:0007420 GO:GO:0007507 GO:GO:0006413
GO:GO:0003743 GO:GO:0005852 MEROPS:M67.971 eggNOG:NOG314046
HOVERGEN:HBG000883 KO:K03247 OrthoDB:EOG4SJ5FF HAMAP:MF_03007
EMBL:BC086809 EMBL:BC107824 IPI:IPI00655366 RefSeq:NP_001030341.1
UniGene:Dr.86151 STRING:Q5PR67 PRIDE:Q5PR67 GeneID:567151
KEGG:dre:567151 CTD:567151 NextBio:20888545 Uniprot:Q5PR67
Length = 333
Score = 118 (46.6 bits), Expect = 0.00011, P = 0.00011
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 7 IKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEAELN 66
I++ +V+ +I+ ++ S V G LLG V + +E+TNCF P D+ E+
Sbjct: 20 IQIEGLVVMKIIKHYQEEGQGSEVVQGVLLGLVVEDQLEITNCFPFPQHTEDDADFDEVQ 79
Query: 67 YAQDMFEMNQKVNPSELIVGWW 88
Y +M + VN L VGW+
Sbjct: 80 YQMEMMRSLRHVNIDHLHVGWY 101
>UNIPROTKB|Q5PPY6 [details] [associations]
symbol:eif3h "Eukaryotic translation initiation factor 3
subunit H" species:8355 "Xenopus laevis" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 GO:GO:0006413 GO:GO:0003743
GO:GO:0005852 MEROPS:M67.971 HOVERGEN:HBG000883 KO:K03247
HAMAP:MF_03007 CTD:8667 EMBL:BC087438 RefSeq:NP_001088779.1
UniGene:Xl.7704 GeneID:496043 KEGG:xla:496043
Xenbase:XB-GENE-958120 Uniprot:Q5PPY6
Length = 334
Score = 114 (45.2 bits), Expect = 0.00032, P = 0.00032
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 7 IKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEAELN 66
+++ +V+ +I+ ++ S V G LLG V +E+TNCF P D++ E+
Sbjct: 21 VQIDGLVVLKIIKHYQEEGHGSEVVQGVLLGLVVDDRLEITNCFPFPQHTEDDVDFDEVQ 80
Query: 67 YAQDMFEMNQKVNPSELIVGWW 88
Y +M + VN L VGW+
Sbjct: 81 YQMEMMRSLRHVNIDHLHVGWY 102
>UNIPROTKB|Q6P381 [details] [associations]
symbol:eif3h "Eukaryotic translation initiation factor 3
subunit H" species:8364 "Xenopus (Silurana) tropicalis" [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0006413
GO:GO:0003743 GO:GO:0005852 MEROPS:M67.971 eggNOG:NOG314046
HOGENOM:HOG000248787 HOVERGEN:HBG000883 KO:K03247 HAMAP:MF_03007
CTD:8667 EMBL:BC064151 RefSeq:NP_989359.1 UniGene:Str.1956
ProteinModelPortal:Q6P381 STRING:Q6P381 GeneID:394989
KEGG:xtr:394989 Xenbase:XB-GENE-958115 InParanoid:Q6P381
OrthoDB:EOG4VQ9PV Uniprot:Q6P381
Length = 335
Score = 114 (45.2 bits), Expect = 0.00032, P = 0.00032
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 7 IKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEAELN 66
+++ +V+ +I+ ++ S V G LLG V +E+TNCF P D++ E+
Sbjct: 22 VQIDGMVVLKIIKHYQEEGHGSEVVQGVLLGLVVDDRLEITNCFPFPQHTEDDVDFDEVQ 81
Query: 67 YAQDMFEMNQKVNPSELIVGWW 88
Y +M + VN L VGW+
Sbjct: 82 YQMEMMRSLRHVNIDHLHVGWY 103
>UNIPROTKB|B5RI54 [details] [associations]
symbol:eif3h "Eukaryotic translation initiation factor 3
subunit H" species:8030 "Salmo salar" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 GO:GO:0006413 GO:GO:0003743
GO:GO:0005852 MEROPS:M67.971 HOVERGEN:HBG000883 HAMAP:MF_03007
EMBL:BT043978 UniGene:Ssa.31091 Uniprot:B5RI54
Length = 344
Score = 114 (45.2 bits), Expect = 0.00033, P = 0.00033
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 7 IKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEAELN 66
I++ +V+ +++ ++ S V G LLG V + +E+TNCF P D+ E+
Sbjct: 31 IQIEGLVVLKMIKHYQEEGQGSEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQ 90
Query: 67 YAQDMFEMNQKVNPSELIVGWW 88
Y +M + VN L VGW+
Sbjct: 91 YQMEMMRSLRHVNIDHLHVGWY 112
>UNIPROTKB|Q56JZ5 [details] [associations]
symbol:EIF3H "Eukaryotic translation initiation factor 3
subunit H" species:9913 "Bos taurus" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0006413
GO:GO:0003743 GO:GO:0005852 MEROPS:M67.971 eggNOG:NOG314046
GeneTree:ENSGT00550000074674 HOGENOM:HOG000248787
HOVERGEN:HBG000883 KO:K03247 OMA:NCFPFPK OrthoDB:EOG4SJ5FF
HAMAP:MF_03007 EMBL:AY911332 EMBL:BC102096 IPI:IPI00714818
RefSeq:NP_001020493.1 UniGene:Bt.16723 STRING:Q56JZ5 PRIDE:Q56JZ5
Ensembl:ENSBTAT00000018645 GeneID:506873 KEGG:bta:506873 CTD:8667
InParanoid:Q56JZ5 NextBio:20867779 Uniprot:Q56JZ5
Length = 352
Score = 113 (44.8 bits), Expect = 0.00045, P = 0.00045
Identities = 35/135 (25%), Positives = 63/135 (46%)
Query: 7 IKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEAELN 66
+++ +V+ +I+ ++ + V G LLG V + +E+TNCF P D+ E+
Sbjct: 39 VQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQ 98
Query: 67 YAQDMFEMNQKVNPSELIVGWWAT---GDEVTS---QSSVIHDYYIRECKNPVHMTLDTN 120
Y +M + VN L VGW+ + G VT S + + I E ++ + T
Sbjct: 99 YQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKT- 157
Query: 121 LKGPNMGIKGYVHVP 135
+G ++ +K Y P
Sbjct: 158 AQG-SLSLKAYRLTP 171
>UNIPROTKB|O15372 [details] [associations]
symbol:EIF3H "Eukaryotic translation initiation factor 3
subunit H" species:9606 "Homo sapiens" [GO:0005515 "protein
binding" evidence=IPI] [GO:0006413 "translational initiation"
evidence=IC;IDA;TAS] [GO:0006446 "regulation of translational
initiation" evidence=TAS] [GO:0003743 "translation initiation
factor activity" evidence=IC;IDA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:0005829
"cytosol" evidence=TAS] [GO:0006412 "translation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0044267 "cellular
protein metabolic process" evidence=TAS] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 Reactome:REACT_17015
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0005829
GO:GO:0006413 GO:GO:0006446 GO:GO:0003743 GO:GO:0005852
MEROPS:M67.971 eggNOG:NOG314046 HOVERGEN:HBG000883 KO:K03247
OrthoDB:EOG4SJ5FF HAMAP:MF_03007 Reactome:REACT_1762 CTD:8667
EMBL:U54559 EMBL:AF092576 EMBL:AF092569 EMBL:AF092570 EMBL:AF092571
EMBL:AF092572 EMBL:AF092573 EMBL:AF092574 EMBL:AF092575
EMBL:BC000386 IPI:IPI00977658 RefSeq:NP_003747.1 UniGene:Hs.492599
ProteinModelPortal:O15372 SMR:O15372 DIP:DIP-33689N IntAct:O15372
MINT:MINT-5000446 STRING:O15372 PhosphoSite:O15372 PaxDb:O15372
PRIDE:O15372 DNASU:8667 Ensembl:ENST00000521861 GeneID:8667
KEGG:hsa:8667 UCSC:uc003yoa.3 GeneCards:GC08M117727 HGNC:HGNC:3273
HPA:HPA023117 HPA:HPA023553 MIM:603912 neXtProt:NX_O15372
PharmGKB:PA162384854 InParanoid:O15372 PhylomeDB:O15372
ChiTaRS:EIF3H GenomeRNAi:8667 NextBio:32511 ArrayExpress:O15372
Bgee:O15372 CleanEx:HS_EIF3H Genevestigator:O15372
GermOnline:ENSG00000147677 Uniprot:O15372
Length = 352
Score = 113 (44.8 bits), Expect = 0.00045, P = 0.00045
Identities = 35/135 (25%), Positives = 63/135 (46%)
Query: 7 IKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEAELN 66
+++ +V+ +I+ ++ + V G LLG V + +E+TNCF P D+ E+
Sbjct: 39 VQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQ 98
Query: 67 YAQDMFEMNQKVNPSELIVGWWAT---GDEVTS---QSSVIHDYYIRECKNPVHMTLDTN 120
Y +M + VN L VGW+ + G VT S + + I E ++ + T
Sbjct: 99 YQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKT- 157
Query: 121 LKGPNMGIKGYVHVP 135
+G ++ +K Y P
Sbjct: 158 AQG-SLSLKAYRLTP 171
>MGI|MGI:1915385 [details] [associations]
symbol:Eif3h "eukaryotic translation initiation factor 3,
subunit H" species:10090 "Mus musculus" [GO:0003743 "translation
initiation factor activity" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005852 "eukaryotic translation initiation factor
3 complex" evidence=ISO;IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0006413 "translational initiation"
evidence=ISO;IDA] [GO:0032403 "protein complex binding"
evidence=ISO] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=ISO] [GO:0043234 "protein complex"
evidence=ISO] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
MGI:MGI:1915385 GO:GO:0006413 GO:GO:0003743 GO:GO:0005852
MEROPS:M67.971 eggNOG:NOG314046 GeneTree:ENSGT00550000074674
HOGENOM:HOG000248787 HOVERGEN:HBG000883 KO:K03247 OMA:NCFPFPK
HAMAP:MF_03007 CTD:8667 EMBL:BC014755 IPI:IPI00128202
RefSeq:NP_542366.1 UniGene:Mm.289800 ProteinModelPortal:Q91WK2
SMR:Q91WK2 MINT:MINT-4098428 STRING:Q91WK2 PhosphoSite:Q91WK2
PaxDb:Q91WK2 PRIDE:Q91WK2 Ensembl:ENSMUST00000022925 GeneID:68135
KEGG:mmu:68135 InParanoid:Q91WK2 NextBio:326504 Bgee:Q91WK2
Genevestigator:Q91WK2 GermOnline:ENSMUSG00000022312 Uniprot:Q91WK2
Length = 352
Score = 113 (44.8 bits), Expect = 0.00045, P = 0.00045
Identities = 35/135 (25%), Positives = 63/135 (46%)
Query: 7 IKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEAELN 66
+++ +V+ +I+ ++ + V G LLG V + +E+TNCF P D+ E+
Sbjct: 39 VQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQ 98
Query: 67 YAQDMFEMNQKVNPSELIVGWWAT---GDEVTS---QSSVIHDYYIRECKNPVHMTLDTN 120
Y +M + VN L VGW+ + G VT S + + I E ++ + T
Sbjct: 99 YQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKT- 157
Query: 121 LKGPNMGIKGYVHVP 135
+G ++ +K Y P
Sbjct: 158 AQG-SLSLKAYRLTP 171
>RGD|735178 [details] [associations]
symbol:Eif3h "eukaryotic translation initiation factor 3, subunit
H" species:10116 "Rattus norvegicus" [GO:0003743 "translation
initiation factor activity" evidence=ISO;ISS] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005852 "eukaryotic translation
initiation factor 3 complex" evidence=ISO;ISS] [GO:0006413
"translational initiation" evidence=ISO;ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0032403 "protein complex
binding" evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] [GO:0043234 "protein complex"
evidence=IDA] InterPro:IPR000555 Pfam:PF01398 SMART:SM00232
RGD:735178 GO:GO:0043231 GO:GO:0032403 GO:GO:0006413 GO:GO:0003743
EMBL:CH473950 GO:GO:0005852 MEROPS:M67.971 eggNOG:NOG314046
GeneTree:ENSGT00550000074674 HOGENOM:HOG000248787
HOVERGEN:HBG000883 KO:K03247 OMA:NCFPFPK OrthoDB:EOG4SJ5FF
HAMAP:MF_03007 CTD:8667 EMBL:BC060586 IPI:IPI00208038
RefSeq:NP_942046.1 RefSeq:XP_003750149.1 UniGene:Rn.129213
STRING:Q6P9U8 PhosphoSite:Q6P9U8 PRIDE:Q6P9U8
Ensembl:ENSRNOT00000005786 GeneID:100911110 GeneID:299899
KEGG:rno:100911110 KEGG:rno:299899 UCSC:RGD:735178
InParanoid:Q6P9U8 NextBio:645940 Genevestigator:Q6P9U8
Uniprot:Q6P9U8
Length = 352
Score = 113 (44.8 bits), Expect = 0.00045, P = 0.00045
Identities = 35/135 (25%), Positives = 63/135 (46%)
Query: 7 IKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEAELN 66
+++ +V+ +I+ ++ + V G LLG V + +E+TNCF P D+ E+
Sbjct: 39 VQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQ 98
Query: 67 YAQDMFEMNQKVNPSELIVGWWAT---GDEVTS---QSSVIHDYYIRECKNPVHMTLDTN 120
Y +M + VN L VGW+ + G VT S + + I E ++ + T
Sbjct: 99 YQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKT- 157
Query: 121 LKGPNMGIKGYVHVP 135
+G ++ +K Y P
Sbjct: 158 AQG-SLSLKAYRLTP 171
>UNIPROTKB|B3KS98 [details] [associations]
symbol:EIF3S3 "Eukaryotic translation initiation factor 3,
subunit 3 gamma, 40kDa, isoform CRA_b" species:9606 "Homo sapiens"
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 GO:GO:0005737 EMBL:CH471060
GO:GO:0003743 HOGENOM:HOG000248787 HOVERGEN:HBG000883 OMA:NCFPFPK
UniGene:Hs.492599 HGNC:HGNC:3273 ChiTaRS:EIF3H EMBL:AP002905
EMBL:AC023520 EMBL:AK093128 IPI:IPI00647650
ProteinModelPortal:B3KS98 SMR:B3KS98 STRING:B3KS98 PRIDE:B3KS98
Ensembl:ENST00000276682 UCSC:uc003yob.3 ArrayExpress:B3KS98
Bgee:B3KS98 Uniprot:B3KS98
Length = 366
Score = 113 (44.8 bits), Expect = 0.00048, P = 0.00048
Identities = 35/135 (25%), Positives = 63/135 (46%)
Query: 7 IKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEAELN 66
+++ +V+ +I+ ++ + V G LLG V + +E+TNCF P D+ E+
Sbjct: 53 VQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQ 112
Query: 67 YAQDMFEMNQKVNPSELIVGWWAT---GDEVTS---QSSVIHDYYIRECKNPVHMTLDTN 120
Y +M + VN L VGW+ + G VT S + + I E ++ + T
Sbjct: 113 YQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKT- 171
Query: 121 LKGPNMGIKGYVHVP 135
+G ++ +K Y P
Sbjct: 172 AQG-SLSLKAYRLTP 185
>TAIR|locus:2196469 [details] [associations]
symbol:TIF3H1 "AT1G10840" species:3702 "Arabidopsis
thaliana" [GO:0003743 "translation initiation factor activity"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0005829
"cytosol" evidence=IDA] [GO:0009640 "photomorphogenesis"
evidence=RCA] [GO:0010388 "cullin deneddylation" evidence=RCA]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0003743 EMBL:AC007354
eggNOG:COG1310 HOGENOM:HOG000248787 KO:K03247 OMA:NCFPFPK
HAMAP:MF_03007 EMBL:AF285833 EMBL:AY054641 EMBL:AY081546
EMBL:BT000765 EMBL:AY087338 IPI:IPI00526917 PIR:B86242
RefSeq:NP_563880.1 UniGene:At.17013 ProteinModelPortal:Q9C5Z2
IntAct:Q9C5Z2 STRING:Q9C5Z2 PaxDb:Q9C5Z2 PRIDE:Q9C5Z2
EnsemblPlants:AT1G10840.1 GeneID:837627 KEGG:ath:AT1G10840
TAIR:At1g10840 InParanoid:Q9C5Z2 PhylomeDB:Q9C5Z2
ProtClustDB:CLSN2687763 Genevestigator:Q9C5Z2 Uniprot:Q9C5Z2
Length = 337
Score = 111 (44.1 bits), Expect = 0.00071, P = 0.00071
Identities = 27/60 (45%), Positives = 37/60 (61%)
Query: 31 VIGTLLGTVDKG-VVEVTNCFCVPHKEYDEMVEAE-LNYAQDMFEMNQKVNPSELIVGWW 88
V G LLG +D G V+EVTNCF P ++ DE +EA+ NY +M ++VN VGW+
Sbjct: 47 VTGQLLG-LDVGSVLEVTNCFPFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVGWY 105
>UNIPROTKB|Q5ZLE6 [details] [associations]
symbol:EIF3H "Eukaryotic translation initiation factor 3
subunit H" species:9031 "Gallus gallus" [GO:0006413 "translational
initiation" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=ISS] [GO:0005852 "eukaryotic translation
initiation factor 3 complex" evidence=ISS] InterPro:IPR000555
Pfam:PF01398 SMART:SM00232 GO:GO:0006413 GO:GO:0003743
GO:GO:0005852 MEROPS:M67.971 eggNOG:NOG314046
GeneTree:ENSGT00550000074674 HOGENOM:HOG000248787
HOVERGEN:HBG000883 KO:K03247 OMA:NCFPFPK OrthoDB:EOG4SJ5FF
HAMAP:MF_03007 CTD:8667 EMBL:AJ719788 IPI:IPI00592172
RefSeq:NP_001026122.1 UniGene:Gga.4721 STRING:Q5ZLE6 PRIDE:Q5ZLE6
Ensembl:ENSGALT00000025971 GeneID:420288 KEGG:gga:420288
InParanoid:Q5ZLE6 NextBio:20823227 Uniprot:Q5ZLE6
Length = 348
Score = 111 (44.1 bits), Expect = 0.00075, P = 0.00075
Identities = 35/135 (25%), Positives = 62/135 (45%)
Query: 7 IKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEAELN 66
+++ +V+ +I+ ++ + V G LLG V +E+TNCF P D+ E+
Sbjct: 35 VQIDGLVVLKIIKHYQEEGQGNEVVQGVLLGLVVDDRLEITNCFPFPQHTEDDADFDEVQ 94
Query: 67 YAQDMFEMNQKVNPSELIVGWWAT---GDEVTS---QSSVIHDYYIRECKNPVHMTLDTN 120
Y +M + VN L VGW+ + G VT S + + I E ++ + T
Sbjct: 95 YQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKT- 153
Query: 121 LKGPNMGIKGYVHVP 135
+G ++ +K Y P
Sbjct: 154 AQG-SLSLKAYRLTP 167
>UNIPROTKB|B5FY35 [details] [associations]
symbol:EIF3H "Eukaryotic translation initiation factor 3
subunit H" species:59729 "Taeniopygia guttata" [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0006413
GO:GO:0003743 GO:GO:0005852 MEROPS:M67.971 eggNOG:NOG314046
HOGENOM:HOG000248787 HOVERGEN:HBG000883 KO:K03247 OrthoDB:EOG4SJ5FF
HAMAP:MF_03007 EMBL:DQ213760 RefSeq:NP_001232560.1
UniGene:Tgu.10677 STRING:B5FY35 PRIDE:B5FY35 GeneID:100190645
KEGG:tgu:100190645 Uniprot:B5FY35
Length = 348
Score = 111 (44.1 bits), Expect = 0.00075, P = 0.00075
Identities = 35/135 (25%), Positives = 62/135 (45%)
Query: 7 IKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEAELN 66
+++ +V+ +I+ ++ + V G LLG V +E+TNCF P D+ E+
Sbjct: 35 VQIDGLVVLKIIKHYQEEGQGNEVVQGVLLGLVVDDRLEITNCFPFPQHTEDDADFDEVQ 94
Query: 67 YAQDMFEMNQKVNPSELIVGWWAT---GDEVTS---QSSVIHDYYIRECKNPVHMTLDTN 120
Y +M + VN L VGW+ + G VT S + + I E ++ + T
Sbjct: 95 YQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKT- 153
Query: 121 LKGPNMGIKGYVHVP 135
+G ++ +K Y P
Sbjct: 154 AQG-SLSLKAYRLTP 167
>FB|FBgn0022023 [details] [associations]
symbol:eIF-3p40 "Eukaryotic initiation factor 3 p40 subunit"
species:7227 "Drosophila melanogaster" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0005829 "cytosol"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000555 Pfam:PF01398 SMART:SM00232 GO:GO:0005829
EMBL:AE014134 GO:GO:0022008 GO:GO:0003743 eggNOG:COG1310
GO:GO:0005852 GeneTree:ENSGT00550000074674 KO:K03247 OMA:NCFPFPK
HAMAP:MF_03007 EMBL:AF160896 EMBL:BT071794 RefSeq:NP_524834.2
RefSeq:NP_995631.1 UniGene:Dm.1462 ProteinModelPortal:Q9U9Q4
IntAct:Q9U9Q4 MINT:MINT-1564430 STRING:Q9U9Q4 PaxDb:Q9U9Q4
PRIDE:Q9U9Q4 EnsemblMetazoa:FBtr0079030 EnsemblMetazoa:FBtr0079031
GeneID:45682 KEGG:dme:Dmel_CG9124 UCSC:CG9124-RA CTD:45682
FlyBase:FBgn0022023 InParanoid:Q9U9Q4 OrthoDB:EOG4JWSW1
PhylomeDB:Q9U9Q4 ChiTaRS:eIF-3p40 GenomeRNAi:45682 NextBio:838284
Bgee:Q9U9Q4 Uniprot:Q9U9Q4
Length = 338
Score = 110 (43.8 bits), Expect = 0.00093, P = 0.00093
Identities = 37/127 (29%), Positives = 57/127 (44%)
Query: 22 ERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEAELNYAQDMFEMNQKVNPS 81
E N+D + G LLG V +E+TNCF P K DE ++ E+ Y + ++VN
Sbjct: 39 ESSNMDLAQ--GALLGLVVDKCLEITNCFPFP-KSGDETMDEEM-YQLTVMRRLRRVNVD 94
Query: 82 ELIVGWWATGDEVTSQSSVIHD---YYIRECKNPVHMTLDTNLKGPN-MGIKGYVHVPIG 137
L VGW+ + D S S + + +Y + V + DT + +K Y P
Sbjct: 95 HLHVGWYQSSDVGNSLSMALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRLTPQA 154
Query: 138 VPGGKSG 144
+ K G
Sbjct: 155 IQMYKDG 161
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 273 251 0.00081 114 3 11 22 0.44 33
32 0.47 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 62
No. of states in DFA: 599 (64 KB)
Total size of DFA: 183 KB (2106 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.19u 0.12s 22.31t Elapsed: 00:00:02
Total cpu time: 22.20u 0.12s 22.32t Elapsed: 00:00:02
Start: Thu Aug 15 14:51:00 2013 End: Thu Aug 15 14:51:02 2013