RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4542
(273 letters)
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34,
JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P
ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Length = 187
Score = 147 bits (372), Expect = 2e-44
Identities = 55/177 (31%), Positives = 87/177 (49%), Gaps = 6/177 (3%)
Query: 6 SIKVHPVVLFQIVDAFERRNLD--SHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEA 63
+ VHP+VL +VD F R RV+G LLG+ K V++V+N F VP E D+
Sbjct: 9 KVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSV 68
Query: 64 EL---NYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTN 120
+Y ++M+ M +KVN E IVGW+ TG ++ I++ R C N V + +D
Sbjct: 69 WFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVK 128
Query: 121 LKGPNMGIKGYVHVP-IGVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAV 176
K + + Y+ V + G + F + +E+ +E G+ L + IK V
Sbjct: 129 PKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTV 185
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P
N-terminal) domain, unknown function; 2.50A {Drosophila
melanogaster}
Length = 141
Score = 131 bits (332), Expect = 8e-39
Identities = 26/137 (18%), Positives = 60/137 (43%), Gaps = 4/137 (2%)
Query: 2 SLNVSIKVHPVVLFQIVDAFER---RNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYD 58
++V+I +HP+V+ I + + R ++ + +V G L+G +E+ N F +
Sbjct: 3 HMSVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSFELKTDVIG 62
Query: 59 EMVEAELNYAQDMFEMNQKVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLD 118
+ +Y + ++V +GW+ TGD T+ I + P+ + L+
Sbjct: 63 DETVINKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQLN 122
Query: 119 TNLKGPN-MGIKGYVHV 134
+ + + +K + +
Sbjct: 123 PLSRSVDHLPLKLFESL 139
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.8 bits (121), Expect = 2e-07
Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 43/188 (22%)
Query: 10 HPVVLFQIVDAFERR----NLDSHRVIGTLLGTVDKGVVEVTNCF---CVP-HKEYDEMV 61
P L+ + + LD R+ + + ++ +N F P H +V
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIPFS------ERKLKFSNRFLPVASPFHSHL--LV 433
Query: 62 EAELNYAQDMFEMNQKVNPSELIVGWWAT--GDEVTSQSSVIHDYYIRE-CKNPVHMTLD 118
A +D+ + N N ++ + + T G ++ S I + + + PV
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT 493
Query: 119 TNLKGPNMGIKGYVHVPI--GVPGGKSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAV 176
T K H+ + G PGG SG+ + N + TG+R+ I G +
Sbjct: 494 TQFKAT--------HI-LDFG-PGGASGL------GVLTHRNKDGTGVRV----IVAGTL 533
Query: 177 --QPLSEL 182
P +
Sbjct: 534 DINPDDDY 541
Score = 41.2 bits (96), Expect = 3e-04
Identities = 52/308 (16%), Positives = 91/308 (29%), Gaps = 83/308 (26%)
Query: 13 VLFQIVDAFERRNL---DSHRVIGTLLGTVDKGVVEVTN---CF----CVPHKEYDEMVE 62
VL + FE L D H + LL D +V+ + + + +D+
Sbjct: 83 VLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN 142
Query: 63 AELN----------YA---------------QDMFEMNQKVNPSELIVGWWATGDEVTSQ 97
+ L A +D+++ V +LI T E+
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT-YHVLVGDLIKFSAETLSELIRT 201
Query: 98 SSVIHDYYIRECKNPVHMTLDTNLKGPNMGIKGY-VHVPIGVPGGKSGIMFTQIPA-EVI 155
+ + + + L+ P+ K Y + +PI P I Q+ V
Sbjct: 202 TLDAEKVFTQGL--NILEWLENPSNTPD---KDYLLSIPISCP----LIGVIQLAHYVVT 252
Query: 156 CYNSEVTGLRLLHKSIKQGAVQPLSEL---TLVSEAADKLTVLIDHVLRYVDEVL----- 207
T L +S +GA L ++ D V + + VL
Sbjct: 253 AKLLGFTPGEL--RSYLKGATGHSQGLVTAVAIA-ETDSWESFFVSVRKAI-TVLFFIGV 308
Query: 208 -ANRITPDNSIGRQLLDMVNSVPSMTQEQFET-------MFNSNIKDLLMIMTLSQLTKT 259
P+ S+ PS+ ++ E M +I +L T Q+
Sbjct: 309 RCYEAYPNTSL----------PPSILEDSLENNEGVPSPML--SISNL----TQEQVQDY 352
Query: 260 QLLLNEKL 267
N L
Sbjct: 353 VNKTNSHL 360
Score = 37.7 bits (87), Expect = 0.004
Identities = 35/249 (14%), Positives = 68/249 (27%), Gaps = 106/249 (42%)
Query: 77 KVNPSELIVGWWATGDEVTSQSSVIHDYYIRECKNPVHMTLDTNLKGPNMGIKGYVHVPI 136
NP L + + + IRE N M +T + G K + +
Sbjct: 1666 INNPVNLTIHFGGEKGK-----------RIRE--NYSAMIFETIVDGKLKTEKIFKEINE 1712
Query: 137 GVPG----GKSGIM----FTQIPA---------EVI-----------------------C 156
+ G++ FTQ PA E +
Sbjct: 1713 HSTSYTFRSEKGLLSATQFTQ-PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALA 1771
Query: 157 YNSEV----TGLRLLHK-------SIKQG----------AVQPLSELTLVSEAADKLTVL 195
++V + + ++ ++ + A+ P S+ A L +
Sbjct: 1772 SLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA--LQYV 1829
Query: 196 IDHVLRYVDEVL--ANRITPDNSIGRQL--------LDMVNSVP---------------S 230
++ V + ++ N N +Q LD V +V S
Sbjct: 1830 VERVGKRTGWLVEIVN----YNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKS 1885
Query: 231 MTQEQFETM 239
++ E+ E
Sbjct: 1886 LSLEEVEGH 1894
Score = 31.2 bits (70), Expect = 0.39
Identities = 45/247 (18%), Positives = 71/247 (28%), Gaps = 91/247 (36%)
Query: 13 VLFQI----VDAFERRNL------DSHR-----------VIGTLLGTVDKGVVEVTNCFC 51
VLF I +A+ +L DS + V V TN
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD-YVNKTNS-- 358
Query: 52 VPHKEYDEMVEAELNYAQDMFEMNQKVN-PSELIVGWWATGDEVTSQSSVIH-DYYIREC 109
H + VE L VN L+V +G S+ + +R+
Sbjct: 359 --HLPAGKQVEISL------------VNGAKNLVV----SG----PPQSLYGLNLTLRKA 396
Query: 110 KNPVHMTLDTNLKGPNMGIKGYVHV---PIGVPGGKSGIMFTQIPAEVICYNSEVTGLRL 166
K P LD + + P K P+ P ++S L
Sbjct: 397 KAP--SGLDQS-RIPFSERKLKFSNRFLPVASP-----------------FHSH-----L 431
Query: 167 LHKSIKQGAVQPLSELTLVSEAAD-KLTVL--ID-HVLRYVDEVLANRITPDNSIGRQLL 222
L + L + + A D ++ V D LR SI +++
Sbjct: 432 L-VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR----------VLSGSISERIV 480
Query: 223 DMVNSVP 229
D + +P
Sbjct: 481 DCIIRLP 487
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 6e-04
Identities = 35/254 (13%), Positives = 79/254 (31%), Gaps = 75/254 (29%)
Query: 8 KVHPVVLF--------QIVDAFERRNLDSHRVIG--TLLGTVDKGVVEVTNCFCVPHKEY 57
K + L + +AF + LL T K V + + H
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFN---------LSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 58 DEMVEA-ELNYAQDMF-------------EMNQKVNPSEL-IVGWWATGDEVTSQSSVIH 102
D + + + E+ NP L I+ E
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREV-LTTNPRRLSIIA------ESIRDGLATW 344
Query: 103 DYYIRECKNPVHMTLDTNLKG--PNMGIKGYVHVPIGVPGGKSGIMF---TQIPAEVIC- 156
D + + + ++++L P K + + + F IP ++
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV----------FPPSAHIPTILLSL 394
Query: 157 --YNSEVTGLRLLHKSIKQGAVQPLSELTLVSEAADKLTVLIDHVLRYVDEVLANRITPD 214
++ + + ++ V L + +LV + + T+ I + Y++ ++ +
Sbjct: 395 IWFDVIKSDVMVV--------VNKLHKYSLVEKQPKESTISI-PSI-YLEL----KVKLE 440
Query: 215 N--SIGRQLLDMVN 226
N ++ R ++D N
Sbjct: 441 NEYALHRSIVDHYN 454
Score = 28.7 bits (63), Expect = 2.5
Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 27/125 (21%)
Query: 167 LHKSIKQGAVQPLSELTLVSEAADKL----TVLID-HVLRYVDEVLANR-----ITPDNS 216
L IK QP + E D+L V +V R + L R + P +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR-LQPYLKLRQALLELRPAKN 152
Query: 217 I--------GRQLLDMVNSVPSMTQEQFETMFNSNIKDLLMIMTLSQLTKTQLLLNEKLT 268
+ G+ + V + + + I + L + +L
Sbjct: 153 VLIDGVLGSGKTWV--ALDV--CLSYKVQCKMDFKI----FWLNLKNCNSPETVLEMLQK 204
Query: 269 LLTSL 273
LL +
Sbjct: 205 LLYQI 209
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated
deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens}
PDB: 3rzu_A
Length = 211
Score = 34.7 bits (79), Expect = 0.019
Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 31 VIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEAELNYAQDMFEMNQKVNPSELIVGWW 88
G L G + + +T+ + E +++F + + + +GW
Sbjct: 68 TCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTE--NEEELFLIQDQ--QGLITLGWI 121
>2znr_A AMSH-like protease; metal binding protein, alternative splicing,
hydrolase, metal-binding, metalloprotease, UBL
conjugation pathway, zinc; 1.20A {Homo sapiens} PDB:
2znv_A
Length = 178
Score = 34.3 bits (78), Expect = 0.022
Identities = 14/117 (11%), Positives = 34/117 (29%), Gaps = 8/117 (6%)
Query: 6 SIKVHPVVLFQIVDAFERRNLDSHRVIGTLLGTVDKGVVEVTNCFCVPHKEYDEMVEAEL 65
+ + + + + E + G L G + +T+ + + E
Sbjct: 10 CVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDME- 68
Query: 66 NYAQDMFEMNQKVNPSELIVGWWAT----GDEVTSQSSVIHDYYIRECKNPVHMTLD 118
+++F + L +GW T ++S H Y + +
Sbjct: 69 -NVEELFNVQD--QHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCS 122
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural
genomics, joint center for structural genomics, J
protein structure initiative, PSI-2; HET: MSE; 2.00A
{Ruegeria SP}
Length = 331
Score = 31.7 bits (71), Expect = 0.19
Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 20/123 (16%)
Query: 110 KNPVHMTLDTNLKG-----------PNMGIKGYVHVPIGVPGGKSGIMFTQIPAEVIC-- 156
NP+ T+ + G + G V +PI V +G ++
Sbjct: 4 DNPISPTIPLDQDGVHHGFLKLPYSRDDSAWGSVMIPITVIQNGAG------KTALLTGA 57
Query: 157 -YNSEVTGLRLLHKSIKQGAVQPLSELTLVSEAADKLTVLIDHVLRYVDEVLANRITPDN 215
+ E G L + + ++ ++ + +D NR P
Sbjct: 58 NHGDEYEGPVALQELAATTRAEDVTGRLIIVPYFNYPAFRASARTSPIDRGNLNRAFPGR 117
Query: 216 SIG 218
G
Sbjct: 118 PDG 120
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 30.7 bits (70), Expect = 0.41
Identities = 18/103 (17%), Positives = 28/103 (27%), Gaps = 14/103 (13%)
Query: 154 VICYNSEVTGLRLLHKSIKQG------AVQPLSELTLVSEAADKLTVLIDHVLRY---VD 204
V+ Y + L + + +L+L S D +ID R D
Sbjct: 39 VVHYRHSEGAAQRLVAELNAARAGSAVLCK--GDLSLSSSLLDCCEDIIDCSFRAFGRCD 96
Query: 205 EVLANR--ITPDNSIGRQLLDMVNSVPSMTQEQFETMFNSNIK 245
VL N + + Q +F SN
Sbjct: 97 -VLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAV 138
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Length = 144
Score = 29.5 bits (66), Expect = 0.63
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 6 SIKVHPVVLFQIVDAFERRNLDSHRVIGTLL 36
V +FQ VD +E +++ V TL+
Sbjct: 87 DYGVIKTDMFQTVDLYEGKDM--AAVQRTLM 115
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Length = 155
Score = 29.2 bits (65), Expect = 0.92
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 6 SIKVHPVVLFQIVDAFERRNLDSHRVIGTLL 36
++ +FQ VD +E +N+ V TL+
Sbjct: 94 RYGINTTDIFQTVDLWEGKNM--ACVQRTLM 122
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural
genomics, NPPSFA, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 136
Score = 29.0 bits (65), Expect = 0.93
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 6 SIKVHPVVLFQIVDAFERRNLDSHRVIGTLL 36
V P +F+ D FE N +V TLL
Sbjct: 85 KYGVKPHDIFEANDLFENTNH--TQVQSTLL 113
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin
binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Length = 108
Score = 28.5 bits (64), Expect = 1.0
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 6 SIKVHPVVLFQIVDAFERRNLDSHRVIGTLL 36
V P +F+ D FE N +V TL+
Sbjct: 71 HYGVKPHDIFEANDLFENTNH--TQVQSTLI 99
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle,
protein binding; 2.21A {Schizosaccharomyces pombe} SCOP:
a.40.1.1
Length = 159
Score = 28.7 bits (64), Expect = 1.4
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 6 SIKVHPVVLFQIVDAFERRNLDSHRVIGTLL 36
I + + F++ D +E +NL +VI +
Sbjct: 82 GIGLPEIFHFELTDIYEGKNL--PKVIYCIH 110
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle,
cytokine; 2.22A {Schizosaccharomyces pombe} SCOP:
a.40.1.1
Length = 203
Score = 28.8 bits (64), Expect = 1.4
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 6 SIKVHPVVLFQIVDAFERRNLDSHRVIGTLL 36
I + + F++ D +E +NL +VI +
Sbjct: 126 GIGLPEIFHFELTDIYEGKNL--PKVIYCIH 154
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural
genomics, NPPSFA, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 146
Score = 28.3 bits (63), Expect = 1.5
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 6 SIKVHPVVLFQIVDAFERRNLDSHRVIGTLL 36
S ++PV LF+ D FE N+ +V +LL
Sbjct: 85 SYGMNPVDLFEANDLFESGNM--TQVQVSLL 113
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical,
calmodulin-binding, cell membrane, membrane,
phosphoprotein, protein binding; 2.50A {Homo sapiens}
Length = 193
Score = 28.4 bits (63), Expect = 1.8
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 6 SIKVHPVVLFQIVDAFERRNLDSHRVIGTLL 36
I + + + D ++R+N+ R I +
Sbjct: 127 EIGLPKIFYPETTDIYDRKNM--PRCIYCIH 155
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo
sapiens}
Length = 190
Score = 28.0 bits (62), Expect = 2.7
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 6 SIKVHPVVLFQIVDAFERRNLDSHRVIGTLL 36
I + + + D ++R+N+ R I +
Sbjct: 105 EIGLPKIFYPETTDIYDRKNM--PRCIYCIH 133
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 27.9 bits (63), Expect = 3.0
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 18/97 (18%)
Query: 154 VICYNSEVTGLRLLHKSIKQGAVQPLSELTLVSEAADKLTVLIDHVLRY---VDEVLANR 210
+ S + + G+ + + T VS+ A L + +D V+
Sbjct: 38 AVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQ-CDALAGRAVEEFGGID-VVCAN 95
Query: 211 --ITPDNSIGRQLLDMVNSVPSMTQEQFETMFNSNIK 245
+ PD + MT EQ +F N+
Sbjct: 96 AGVFPDAPLAT-----------MTPEQLNGIFAVNVN 121
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 27.1 bits (61), Expect = 5.3
Identities = 15/121 (12%), Positives = 38/121 (31%), Gaps = 26/121 (21%)
Query: 138 VPGGKSGI------MFTQIPAEV-ICYNSEVTGLRLLHKSIKQGAVQPLSELTLVSEAAD 190
+ G GI +F + A+V + + S++ ++ +
Sbjct: 12 ITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEA 71
Query: 191 KLTVLIDHVLRY---VDEVLAN---RITPDNSIGRQLLDMVNSVPSMTQEQFETMFNSNI 244
L+D + +D VL N + + + ++ + ++NI
Sbjct: 72 -CQQLVDEFVAKFGGID-VLINNAGGLVGRKPLPE-----------IDDTFYDAVMDANI 118
Query: 245 K 245
+
Sbjct: 119 R 119
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane
protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Length = 133
Score = 26.3 bits (59), Expect = 5.7
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 4 NVSIKVHPVVLFQIVDA 20
+V+I V VV +++ +A
Sbjct: 33 SVTISVDGVVYYRVQNA 49
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 27.2 bits (61), Expect = 5.9
Identities = 15/112 (13%), Positives = 37/112 (33%), Gaps = 18/112 (16%)
Query: 142 KSGIMFTQIPAEVICYNSEVTGLRLLHKSIKQGAVQPLSELTLVSEAADKLTVLIDHVLR 201
++ ++ + L + + + +S+ AD + L H++
Sbjct: 24 RAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMAD-VRRLTTHIVE 82
Query: 202 Y---VDEVLANR--ITPDNSIGRQLLDMVNSVPSMTQEQFETMFNSNIKDLL 248
+D L N + ++ +T+E F+ N+N+K
Sbjct: 83 RYGHID-CLVNNAGVGRFGALSD-----------LTEEDFDYTMNTNLKGTF 122
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH,
membrane fusion, trafficking, transmembrane, membrane
protein; 3.20A {Pyrococcus horikoshii}
Length = 188
Score = 26.8 bits (60), Expect = 6.8
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 4 NVSIKVHPVVLFQIVDA 20
NV ++V+ VV F++VD
Sbjct: 28 NVPVRVNAVVYFRVVDP 44
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus
horikoshii}
Length = 113
Score = 26.0 bits (58), Expect = 6.8
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 4 NVSIKVHPVVLFQIVDA 20
NV + V VV +Q++D
Sbjct: 24 NVVVTVDAVVYYQVIDP 40
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 26.7 bits (60), Expect = 7.2
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 9/54 (16%)
Query: 197 DHVLRYVDEVLAN--RITPD---NSIGRQLLDMVNSVPSMTQEQFETMFNSNIK 245
V + + D G+Q + + +T EQF+ F N+
Sbjct: 113 SFARSLVHKAREALGGL--DILALVAGKQ--TAIPEIKDLTSEQFQQTFAVNVF 162
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.387
Gapped
Lambda K H
0.267 0.0818 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,030,761
Number of extensions: 239746
Number of successful extensions: 547
Number of sequences better than 10.0: 1
Number of HSP's gapped: 538
Number of HSP's successfully gapped: 34
Length of query: 273
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 181
Effective length of database: 4,133,061
Effective search space: 748084041
Effective search space used: 748084041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)