RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4542
         (273 letters)



>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 144

 Score = 27.3 bits (60), Expect = 1.2
 Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 6   SIKVHPVVLFQIVDAFERRNLDSHRVIGTLL 36
              V    +FQ VD +E +++    V  TL+
Sbjct: 87  DYGVIKTDMFQTVDLYEGKDM--AAVQRTLM 115


>d1jeya1 b.131.1.1 (A:254-534) Ku70 subunit middle domain {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 281

 Score = 26.8 bits (59), Expect = 3.3
 Identities = 6/64 (9%), Positives = 17/64 (26%)

Query: 174 GAVQPLSELTLVSEAADKLTVLIDHVLRYVDEVLANRITPDNSIGRQLLDMVNSVPSMTQ 233
            A+ P  E     +            L + D+      T       + +  + ++    +
Sbjct: 158 VALVPQEEELDDQKIQVTPPGFQLVFLPFADDKRKMPFTEKIMATPEQVGKMKAIVEKLR 217

Query: 234 EQFE 237
             + 
Sbjct: 218 FTYR 221


>d1n1fa_ a.26.1.3 (A:) Interleukin-19 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 156

 Score = 25.6 bits (56), Expect = 5.2
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 195 LIDHVLR-YVDEVLANRITPDNSIGRQLLDMVNSVPSMTQE 234
           +  ++L  YVD V  +   P+  I R++  + NS   M + 
Sbjct: 56  VTKNLLAFYVDRVFKDHQEPNPKILRKISSIANSFLYMQKT 96


>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId:
          9031]}
          Length = 108

 Score = 24.5 bits (53), Expect = 8.8
 Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 2/31 (6%)

Query: 6  SIKVHPVVLFQIVDAFERRNLDSHRVIGTLL 36
             V P  +F+  D FE  N    +V  TL+
Sbjct: 71 HYGVKPHDIFEANDLFENTNH--TQVQSTLI 99


>d2ilka_ a.26.1.3 (A:) Interleukin-10 (cytokine synthesis inhibitory
           factor, CSIF) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 155

 Score = 24.7 bits (54), Expect = 9.2
 Identities = 5/41 (12%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 195 LIDHVLR-YVDEVLANRITPDNSIGRQLLDMVNSVPSMTQE 234
            +  +++ Y++EV+      D  I   +  +  ++ ++   
Sbjct: 59  ALSEMIQFYLEEVMPQAENQDPDIKAHVNSLGENLKTLRLR 99


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0660    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 965,826
Number of extensions: 42880
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 9
Length of query: 273
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 189
Effective length of database: 1,254,276
Effective search space: 237058164
Effective search space used: 237058164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)